Description

berryQCHPluginListener.cpp

splashscreen.png

BlueBerry/

Bundles/

org.blueberry.osgi/

src/

berryObjectVector.h

org.blueberry.ui.qt.help/

resources/

helpIndex.png

helpSearch.png

src/

internal/

berryHelpPerspective.cpp

org.blueberry.ui.qt.log/

resources/

debug.png

fatal.png

org.blueberry.ui.qt.objectinspector/

documentation/

UserManual/

ObjectBrowser.png

resources/

ObjectBrowser.png

org.blueberry.ui.qt/

src/

internal/

util/

berryPresentablePartFolder.cpp

org.blueberry.ui/

src/

handlers/

berryIHandlerService.h

internal/

berryPartStack.cpp

berrySaveablesList.cpp

berryWorkbenchWindow.cpp

util/

berrySafeRunnable.cpp

CMake/

MacroCreateCTKPlugin.cmake

CMake/

BuildConfigurations

All.cmake

WorkbenchRelease.cmake

	BuildConfigurations/

	Default.cmake
	mitkBuildConfigurationDefault.cmake

	mitkDiffusion.cmake
	mitkBuildConfigurationmitkDiffusion.cmake

MITKDashboardSetup.cmake

PackageDepends/

MITK_ITK_Config.cmake

MITK_Redland_Config.cmake

Whitelists

Minimal.cmake

mitkBuildConfigurationAll.cmake

mitkBuildConfigurationDefault.cmake

mitkBuildConfigurationWorkbenchRelease.cmake

mitkBuildConfigurationmitkDiffusion.cmake

mitkFunctionEnableBuildConfiguration.cmake

mitkFunctionGetLibrarySearchPaths.cmake

mitkFunctionUseModules.cmake

mitkFunctionWhitelists.cmake

CMakeExternals/

ANN.cmake

Eigen.cmake

MITKData.cmake

OpenCV.cmake

PCRE.cmake

PatchQwt-6.1.0.cmake

PatchSOFA-386a3a7.cmake

PatchSOFA-rev10669.cmake

Qwt.cmake

SOFA.cmake

Swig.cmake

raptor2-2.0.15.patch

raptor2.cmake

rasqal-0.9.32.patch

rasqal.cmake

redland-1.0.17.patch

redland.cmake

mitkExtractSliceFilter.cpp

Core/

Code/

Algorithms/

mitkExtractSliceFilter.h

Common/

mitkCoreObjectFactory.cpp

Controllers/

mitkVtkLayerController.cpp

mitkVtkLayerController.h

DataManagement/

mitkAbstractTransformGeometry.cpp

mitkAbstractTransformGeometry.h

mitkAffineTransform3D.h

mitkBaseGeometry.cpp

mitkBaseGeometry.h

mitkColorProperty.h

mitkDisplayGeometry.h

mitkGeometry3D.h

mitkGeometryTransformHolder.cpp

mitkGeometryTransformHolder.h

mitkImage.cpp

mitkImagePixelWriteAccessor.h

mitkImageStatisticsHolder.cpp

mitkImageStatisticsHolder.h

mitkLandmarkProjectorBasedCurvedGeometry.h

mitkLine.h

mitkPlaneGeometry.cpp

mitkPlaneGeometry.h

mitkSlicedGeometry3D.cpp

mitkSlicedGeometry3D.h

mitkThinPlateSplineCurvedGeometry.h

IO/

mitkFileWriterSelector.cpp

mitkVtkLoggingAdapter.h

Interactions/

mitkMouseMovePointSetInteractor.h

Interfaces/

mitkIFileReader.h

mitkIFileWriter.h

mitkIMimeTypeProvider.h

mitkIPersistenceService.h

mitkIPropertyAliases.h

mitkIPropertyDescriptions.h

mitkIPropertyExtensions.h

mitkIPropertyFilters.h

mitkIShaderRepository.h

mitkInteractionEventObserver.h

Internal/

mitkItkImageIO.cpp

mitkPointSetReaderService.cpp

mitkPointSetReaderService.h

mitkPointSetWriterService.h

Rendering/

mitkGradientBackground.cpp

mitkGradientBackground.h

mitkOverlay.cpp

mitkOverlay.h

mitkOverlayManager.cpp

mitkOverlayManager.h

mitkPlaneGeometryDataMapper2D.cpp

mitkPlaneGeometryDataMapper2D.h

mitkPlaneGeometryDataVtkMapper3D.cpp

mitkPointSetGLMapper2D.cpp

mitkPointSetGLMapper2D.h

mitkRenderWindowFrame.cpp

mitkRenderWindowFrame.h

mitkSurfaceGLMapper2D.cpp

mitkSurfaceGLMapper2D.h

mitkSurfaceVtkMapper2D.cpp

mitkSurfaceVtkMapper2D.h

mitkVtkOverlay.cpp

mitkVtkOverlay.h

mitkVtkOverlay2D.h

mitkVtkPropRenderer.cpp

mitkVtkPropRenderer.h

vtkMitkRectangleProp.cpp

vtkMitkRectangleProp.h

vtkMitkRenderProp.cpp

Testing/

mitkSurfaceGLMapper2DColorTest.cpp

mitkBaseGeometryTest.cpp

mitkDataNodeTest.cpp

mitkImageTest.cpp

mitkSurfaceGLMapper2DOpacityTest.cpp

mitkSurfaceVtkMapper2DColorTest.cpp

mitkSurfaceVtkMapper2DOpacityTest.cpp

pipelining_example_ct.png

Documentation/

Doxygen/

Concepts/

MitkImage.dox

ReaderWriterPage.md

images/

pipelining/

pipelining_hierarchy.png

Groups/

Documentation/

Doxygen/

MITKPerspectiveManualsList.dox

UserManualPortal.dox

	2-UserManual/
	UserManual/

MITKPluginManualsList.dox

DevelopmentApplication.dox

DeveloperManualPortal.dox

StatemachineEditor.dox

GettingToKnow

DocumentationGuide.dox

SupportedPlatforms.md

Starting.dox

Toolkit

ModuleManuals

MITKModuleManualsList.dox

	3-DeveloperManual/
	DeveloperManual/

Application/

BlueBerry

BlueBerryExampleLauncherDialog.png

BlueBerryExamples.dox

BlueBerryExtensionPointsIntro.dox

BlueBerryIntro.dox

BlueBerrySelectionServiceIntro.dox

ExtensionPointEx.png

ExtensionPoints.png

MitkSelectionService.png

SelectionServiceDiagram.png

SelectionServiceDiagram.xcf

application-window.jpg

workbench-class-diagram.jpg

workbench-page.jpg

workbench-window-editor-area.png

workbench-window-editor-area.xcf

workbench-window-perspective.png

workbench-window-perspective.xcf

workbench-window-views.png

workbench-window-views.xcf

workbench-window.jpg

workbench.jpg

Deployment.dox

ExtensionPointReference.dox

HowTos

InteractionTestingHowTo.dox

Starting/

AboutTesting

AboutTestingPage.dox

FirstSteps/

FirstSteps.dox

MiniAppCommandLineTool

MiniAppCommandLineToolHowTo.dox

images

generated_ui_tensor_reconstruction.png

NewView.dox

StatemachineEditor/

images/

BuildPath.PNG

CreateJavaProject.PNG

openPropertiesView.PNG

openstatemachinexml.png

specifycontainer.png

specifycontainer2.png

specifycontainer3.png

GettingToKnow/

CMakeFAQ.dox

Coding.dox

DirectoryStructure.dox

DocumentationExample.dox

GettingToKnowMITK.dox

StyleGuideAndNotes.dox

Tutorial/

configureVisualStudioProperties.png

SettingUpMITK/

BuildInstructions.dox

HowToNewProject-MyProjectLayout.png

HowToNewProject.dox

SettingUpMITK.dox

ThirdPartyLibs.dox

Toolkit/

ModuleManuals/

GeometryMigration.dox

InteractionMigration.dox

	4-API/	Groups.dox/
	API/	Groups/


	Modules.dox

BlueBerryExampleLauncherDialog.png

BlueBerryExamples.dox

BlueBerryExtensionPointsIntro.dox

BlueBerryIntro.dox

BlueBerrySelectionServiceIntro.dox

ExtensionPointEx.png

ExtensionPoints.png

MitkSelectionService.png

SelectionServiceDiagram.png

SelectionServiceDiagram.xcf

application-window.jpg

workbench-class-diagram.jpg

workbench-page.jpg

workbench-window-editor-area.png

workbench-window-editor-area.xcf

workbench-window-perspective.png

workbench-window-perspective.xcf

workbench-window-views.png

workbench-window-views.xcf

workbench-window.jpg

workbench.jpg

Deployment.dox

DevelopmentApplication.dox

ExtensionPointReference.dox

DeveloperManualPortal.dox

HowTos

InteractionTestingHowTo.dox

MiniAppCommandLineTool

MiniAppCommandLineToolHowTo.dox

images

generated_ui_tensor_reconstruction.png

StatemachineEditor.dox

images

BuildPath.PNG

CreateJavaProject.PNG

openPropertiesView.PNG

openstatemachinexml.png

specifycontainer.png

specifycontainer2.png

specifycontainer3.png

GettingToKnow

CMakeFAQ.dox

Coding.dox

DirectoryStructure.dox

DocumentationExample.dox

DocumentationGuide.dox

GettingToKnowMITK.dox

KnownProblems.dox

StyleGuideAndNotes.dox

configureVisualStudioProperties.png

BuildInstructions.dox

BuildToolkits.dox

HowToNewProject-MyProjectLayout.png

HowToNewProject.dox

SettingUpMITK.dox

SupportedPlatforms.md

GeometryMigration.dox

InteractionMigration.dox

MITKModuleManualsList.dox

MITKPerspectiveManualsList.dox

MITKPluginManualsList.dox

MITKDoxygenLayout.xml

doxygen.conf.in

mitk_doxygen_extra.css

Examples/

Plugins/

org.mitk.example.gui.imaging/

documentation/

UserManual/

ColorImageProcessing.png

IsoSurfaceGUI.png

IsoSurfaceIcon.png

SimpleExample.png

SimpleMeasurementIcon.png

resources/

ColorImageProcessing.png

SimpleExample.png

SimpleMeasurement.png

QtFreeRender/

QtFreeRender.cpp

Modules/

AlgorithmsExt/

Documentation/

Doxygen/

mitkContourModelSetSource.h

ContourModel/

Algorithms/

mitkContourModelSource.h

mitkContourModelSubDivisionFilter.h

mitkContourModelToPointSetFilter.h

mitkContourObjectFactory.cpp

mitkImageToContourModelFilter.h

Documentation

Doxygen

mitkContourModelReader.cpp

IO/

mitkContourModelReader.h

mitkContourModelSetReader.cpp

mitkContourModelSetReader.h

mitkContourModelSetWriter.h

mitkContourModelWriter.h

mitkContourModelGLMapper2D.h

Rendering/

mitkContourModelGLMapper2DBase.cpp

mitkContourModelGLMapper2DBase.h

mitkContourModelSetGLMapper2D.cpp

mitkContourModelSetGLMapper2D.h

mitkContourModelActivator.cpp

DataTypesExt/

Documentation/

Doxygen/

AffineDeformationConfig.xml

Resources/

Interactions/

AffineConfig.xml

AffineInteraction3D.xml

AffineRotationConfig.xml

AffineTranslationConfig.xml

	ClippingPlaneDeformationConfig.xml
	AffineDeformationConfig.xml

	ClippingPlaneInteraction3D.xml
	AffineInteraction3D.xml

	ClippingPlaneRotationConfig.xml
	AffineRotationConfig.xml

	ClippingPlaneTranslationConfig.xml
	AffineTranslationConfig.xml

mitkAffineDataInteractor3D.cpp

mitkAffineDataInteractor3D.h

mitkClippingPlaneInteractor3D.cpp

mitkClippingPlaneInteractor3D.h

mitkMeshUtil.h

DiffusionImaging/

Connectomics/

itkDiffusionMultiShellQballReconstructionImageFilter.h

DiffusionCore/

Algorithms/

Reconstruction/

mitkTeemDiffusionTensor3DReconstructionImageFilter.h

Registration/

mitkDWIHeadMotionCorrectionFilter.cpp

mitkDWIHeadMotionCorrectionFilter.h

mitkRegistrationWrapper.cpp

itkAdcImageFilter.h

itkDwiNormilzationFilter.h

itkElectrostaticRepulsionDiffusionGradientReductionFilter.h

itkElectrostaticRepulsionDiffusionGradientReductionFilter.txx

itkExtractDwiChannelFilter.h

itkNonLocalMeansDenoisingFilter.h

itkRemoveDwiChannelFilter.h

itkResampleDwiImageFilter.h

itkResampleDwiImageFilter.txx

itkResidualImageFilter.txx

itkTensorDerivedMeasurementsFilter.txx

itkTensorImageToDiffusionImageFilter.h

itkTensorImageToDiffusionImageFilter.txx

mitkDiffusionImageToDiffusionImageFilter.cpp

mitkDiffusionImageToDiffusionImageFilter.h

mitkDiffusionDICOMFileReader.cpp

DicomImport/

mitkDiffusionDICOMFileReaderHelper.h

mitkDiffusionHeaderDICOMFileReader.h

mitkDiffusionHeaderGEDICOMFileReader.cpp

mitkDiffusionHeaderPhilipsDICOMFileReader.cpp

mitkDiffusionHeaderSiemensDICOMFileHelper.cpp

mitkDiffusionHeaderSiemensDICOMFileReader.cpp

IODataStructures/

DiffusionWeightedImages/

mitkDiffusionImage.h

mitkDiffusionImage.txx

mitkDiffusionImageCorrectionFilter.cpp

mitkDiffusionImageCorrectionFilter.h

mitkDiffusionImageSource.cpp

mitkDiffusionImageSource.h

mitkImageToDiffusionImageSource.cpp

mitkImageToDiffusionImageSource.h

Properties

mitkBValueMapProperty.cpp

mitkBValueMapProperty.h

mitkBValueMapPropertySerializer.cpp

mitkDiffusionPropertyHelper.cpp

mitkDiffusionPropertyHelper.h

mitkGradientDirectionsProperty.cpp

mitkGradientDirectionsProperty.h

mitkGradientDirectionsPropertySerializer.cpp

mitkMeasurementFrameProperty.cpp

mitkMeasurementFrameProperty.h

mitkMeasurementFramePropertySerializer.cpp

mitkNodePredicateIsDWI.cpp

mitkNodePredicateIsDWI.h

Rendering/

mitkDiffusionImageMapper.cpp

mitkDiffusionImageMapper.h

Testing/

mitkB0ExtractionToSeparateImagesFilterTest.cpp

mitkConvertDWITypeTest.cpp

mitkDWHeadMotionCorrectionTest.cpp

mitkDiffusionDICOMFileReaderTest.cpp

mitkDiffusionImageEqualTest.cpp

mitkDiffusionPropertySerializerTest.cpp

mitkExtractSingleShellTest.cpp

mitkImageReconstructionTest.cpp

mitkNonLocalMeansDenoisingTest.cpp

DiffusionIO/

mitkDiffusionCoreObjectFactory.cpp

mitkDiffusionIOMimeTypes.cpp

mitkDiffusionIOMimeTypes.h

mitkDiffusionImageSerializer.cpp

mitkDiffusionImageSerializer.h

mitkNrrdDiffusionImageReader.cpp

mitkNrrdDiffusionImageReader.h

mitkNrrdDiffusionImageWriter.cpp

mitkNrrdDiffusionImageWriter.h

FiberTracking/

Algorithms/

itkAddArtifactsToDwiImageFilter.cpp

itkAddArtifactsToDwiImageFilter.h

itkFiberCurvatureFilter.cpp

itkFiberCurvatureFilter.h

itkTractsToDWIImageFilter.h

IODataStructures/

FiberBundleX/

mitkFiberBundleX.cpp

mitkFiberBundleX.h

mitkFiberfoxParameters.cpp

mitkFiberfoxParameters.h

SignalModels/

mitkRawShModel.cpp

mitkRawShModel.h

Testing/

mitkFiberfoxAddArtifactsToDwiTest.cpp

mitkFiberfoxSignalGenerationTest.cpp

mitkPeakExtractionTest.cpp

MiniApps/

FiberDirectionExtraction.cpp

MultishellMethods.cpp

NetworkStatistics.cpp

PeakExtraction.cpp

QballReconstruction.cpp

TensorDerivedMapsExtraction.cpp

TensorReconstruction.cpp

mitkFileFormatConverter.cpp

mitkRegistration.cpp

IGTUI/

resources/

IOExt/

Documentation/

Doxygen/

mitkPlaneGeometryDataGLMapper2D.cpp

IpPicSupportIO/

Internal/

mitkPlaneGeometryDataGLMapper2D.h

mitkPointSetGLMapper2D.h

mitkSurfaceGLMapper2D.h

mitkVtkGLMapperWrapper.cpp

mitkVtkGLMapperWrapper.h

vtkGLMapperProp.cpp

vtkGLMapperProp.h

LegacyIO/

Documentation

Doxygen

mitkBaseDataIOFactory.h

mitkDataNodeFactory.h

mitkImageWriter.h

mitkItkImageFileIOFactory.h

mitkItkImageFileReader.cpp

mitkItkImageFileReader.h

mitkPointSetIOFactory.h

mitkPointSetReader.cpp

mitkPointSetReader.h

mitkPointSetWriter.h

mitkRawImageFileReader.h

mitkSTLFileIOFactory.h

mitkSTLFileReader.h

mitkSurfaceVtkWriter.h

mitkVtiFileIOFactory.h

mitkVtiFileReader.h

mitkVtkImageIOFactory.h

mitkVtkImageReader.h

mitkVtkSurfaceIOFactory.h

mitkVtkSurfaceReader.h

vtkPointSetXMLParser.h

MapperExt/

Documentation/

Doxygen/

ModuleList.cmake

Overlays/

Testing/

mitkLabelOverlay3DRendering2DTest.cpp

mitkLabelOverlay3DRendering3DTest.cpp

mitkTextOverlay2DRenderingTest.cpp

mitkTextOverlay3DColorRenderingTest.cpp

mitkTextOverlay3DRendering2DTest.cpp

mitkTextOverlay3DRendering3DTest.cpp

mitkLogoOverlay.cpp

mitkLogoOverlay.h

mitkTextOverlay2D.cpp

mitkTextOverlay2D.h

mitkTextOverlay3D.cpp

PlanarFigure/

Algorithms/

mitkImageToPlanarFigureFilter.h

mitkPlanarFigureObjectFactory.cpp

mitkPlanarFigureSource.h

mitkPlanarFigureToPlanarFigureFilter.h

DataManagement/

mitkPlanarFigure.cpp

mitkPlanarFigureControlPointStyleProperty.h

Documentation/

doxygen/

mitkPlanarFigureIOFactory.h

IO/

mitkPlanarFigureReader.h

mitkPlanarFigureWriter.h

mitkPlanarFigureInteractor.h

Interactions/

mitkPlanarFigureMapper2D.cpp

Rendering/

mitkPlanarFigureMapper2D.h

Testing/

mitkPlanarArrowTest.cpp

QmlMitkRenderWindowItem.cpp

QmlItems/

QtWidgets/

Documentation/

Doxygen/

QmitkDataStorageComboBox.cpp

QmitkDataStorageComboBoxWithSelectNone.cpp

QmitkDataStorageComboBoxWithSelectNone.h

QmitkRenderWindow.cpp

QmitkRenderWindow.h

QmitkServiceListWidget.cpp

QmitkStdMultiWidget.cpp

QmitkStdMultiWidget.h

QtWidgetsExt/

QmitkHistogramJSWidget.h

QmitkTransferFunctionGeneratorWidget.cpp

resources/

Histogram.js

Logo_mbiATdkfz_gross.png

PlanarCircle_48.png

btnAddPointSet.png

btnMoveDown.png

btnMoveUp.png

btnRemovePoint.png

btnSetPoints.png

btnSwapSets.png

logo_mint-medical.png

mitkPropertySerializationTest.cpp

SceneSerializationBase/

Testing/

mitkContourModelSetToImageFilter.cpp

Segmentation/

Algorithms/

mitkContourModelSetToImageFilter.h

mitkCorrectorAlgorithm.cpp

mitkSegmentationObjectFactory.cpp

Interactions/

mitkCorrectorTool2D.cpp

mitkContourSetVtkMapper3D.cpp

Rendering/

mitkContourVtkMapper3D.cpp

Watershed_Cursor_32x32.png

Resources/

Testing/

mitkContourModelSetToImageFilterTest.cpp

Simulation/

mitkPlaneIntersectionVisitor.cpp

mitkPlaneIntersectionVisitor.h

mitkSimulation.cpp

mitkSimulationGLMapper2D.cpp

mitkSimulationGLMapper2D.h

mitkSimulationObjectFactory.cpp

mitkSimulationVtkMapper3D.cpp

mitkSimulationVtkMapper3D.h

mitkVtkModel.h

SurfaceInterpolation/

ToFHardware/

ultrasound01-probe-72ppi-deactivated.png

mitkToFImageGrabber.cpp

mitkToFImageGrabber.h

mitkToFImageRecorder.cpp

mitkToFImageRecorder.h

mitkToFImageSource.cpp

mitkToFImageSource.h

USUI/

resources/

ultrasound02-scan-72ppi-deactivated.png

ultrasound03-targeting-72ppi-deactivated.png

ultrasound04-warning-72ppi-deactivated.png

ultrasound05-criticalStructures-72ppi-deactivated.png

ultrasound06-criticalScan-72ppi-deactivated.png

	Modules/	LegacyGL/
	Core/	Code/	Rendering/

mitkGLMapper.cpp

mitkPointSetGLMapper2D.cpp

mitkSurfaceGLMapper2D.cpp

Plugins/

PluginList.cmake

org.mitk.diffusionimaging/

src/

internal/

mitkDiffusionImagingActivator.cpp

org.mitk.gui.qt.basicimageprocessing/

documentation/

UserManual/

QmitkBasicImageProcessing_BIP_Overview.png

org.mitk.gui.qt.cmdlinemodules/

documentation/

UserManual/

cmdlinemodules_F3D.png

cmdlinemodules_Icon.png

cmdlinemodules_Initial.png

cmdlinemodules_NiftyReg.png

cmdlinemodules_NiftyRegRunning2.png

cmdlinemodules_Preferences.png

cmdlinemodules_PreferencesAdditionalDirectories.png

cmdlinemodules_PreferencesAdditionalModules.png

cmdlinemodules_WithPrograms.png

QmitkDataStorageComboBoxWithSelectNone.cpp

src/

internal/

QmitkDataStorageComboBoxWithSelectNone.h

QmitkDatamanager_Icon.png

org.mitk.gui.qt.datamanager/

documentation/

UserManual/

QmitkDatamanager_Overview.png

resources/

DataManager_48.png

data-type-image-mask-visible-24.png

QmitkDicomBrowserControls.ui

org.mitk.gui.qt.dicom/

src/

internal/

org.mitk.gui.qt.diffusionimaging/

documentation/

UserManual/

Connectomics/

QmitkRandomParcellationIcon.png

FiberTracking/

QmitkFiberExtractionViewUserManual.dox

QmitkFiberProcessingViewUserManual.dox

QmitkFiberQuantificationViewUserManual.dox

QmitkDiffusionImagingPortalPage.dox

FiberBundleOperations.png

plugin.xml

resources/

FiberBundle.png

connectomics/

QmitkRandomParcellationIcon.png

source/

src/

internal/

Perspectives/

QmitkFiberProcessingPerspective.cpp

QmitkControlVisualizationPropertiesView.cpp

QmitkDenoisingView.cpp

QmitkDenoisingView.h

QmitkDiffusionDicomImportView.cpp

QmitkDiffusionRegistrationView.cpp

QmitkDiffusionRegistrationView.h

QmitkDwiSoftwarePhantomView.cpp

QmitkFiberExtractionView.cpp

QmitkFiberExtractionView.h

QmitkFiberExtractionViewControls.ui

QmitkFiberProcessingView.cpp

QmitkFiberProcessingView.h

QmitkFiberProcessingViewControls.ui

QmitkFiberQuantificationView.cpp

QmitkFiberQuantificationView.h

QmitkFiberQuantificationViewControls.ui

QmitkFiberfoxView.cpp

QmitkFiberfoxView.h

QmitkFiberfoxViewControls.ui

QmitkIVIMView.cpp

QmitkIVIMView.h

QmitkODFDetailsView.cpp

QmitkODFDetailsView.h

QmitkOdfMaximaExtractionView.cpp

QmitkPartialVolumeAnalysisView.cpp

QmitkPreprocessingView.cpp

QmitkPreprocessingView.h

QmitkQBallReconstructionView.cpp

QmitkQBallReconstructionView.h

QmitkStochasticFiberTrackingView.cpp

QmitkStochasticFiberTrackingView.h

QmitkTensorReconstructionView.cpp

QmitkTensorReconstructionView.h

mitkPluginActivator.cpp

org.mitk.gui.qt.diffusionimagingapp/

resources/

perspectives/

src/

internal/

QmitkNavigationButtonsView.cpp

org.mitk.gui.qt.dtiatlasapp/

resources/

diffusionimaging.png

src/

internal/

QmitkNavigationButtonsView.cpp

org.mitk.gui.qt.ext/

documentation/

UserManual/

MITKUserManual_CrosshairModes.png

MITKUserManual_GUICommented.png

MITKUserManual_WindowDropdown.png

resources/

DataManager.png

Slider.png

Slider_48.png

QmitkExtWorkbenchWindowAdvisor.cpp

src/

org.mitk.gui.qt.extapplication/

resources/

welcome/

function.js

QmitkMitkWorkbenchIntroPart.cpp

src/

internal/

QmitkMitkWorkbenchIntroPart.h

org.mitk.gui.qt.geometrytools

manifest_headers.cmake

QmitkGeometryToolsView.cpp

QmitkGeometryToolsView.h

QmitkGeometryToolsViewControls.ui

org_mitk_gui_qt_geometrytools_Activator.cpp

org_mitk_gui_qt_geometrytools_Activator.h

org.mitk.gui.qt.igtexamples/

documentation/

UserManual/

QmitkIGTExamples_ImageGuidedTherapy.png

org.mitk.gui.qt.imagenavigator/

documentation/

UserManual/

QmtikImageNavigator_ImageNavigator.png

QmtikImageNavigator_Slider.png

resources/

ImageNavigation_48.png

Slider.png

Slider_48.png

QmitkImageNavigatorView.cpp

src/

internal/

QmitkImageNavigatorView.h

QmitkSurfaceMaterialEditor_Icon.png

org.mitk.gui.qt.materialeditor/

documentation/

UserManual/

resources/

SurfaceMaterialEditor.png

org.mitk.gui.qt.measurementtoolbox/

documentation/

UserManual/

QmitkMeasurementToolbox_MeasurementGUI.png

resources/

doubleellipse.png

QmitkImageStatisticsView.cpp

src/

internal/

QmitkMovieMaker_Preferences.png

org.mitk.gui.qt.moviemaker/

documentation/

UserManual/

QmitkPointBasedRegistrationView.cpp

org.mitk.gui.qt.registration/

plugin.xml

src/

internal/

QmitkPointBasedRegistrationView.h

QmitkRigidRegistrationView.cpp

org.mitk.gui.qt.remeshing/

documentation/

UserManual/

QmitkRemeshing_CylinderBad.png

QmitkRemeshing_CylinderGood.png

QmitkRemeshing_Gradation10Percent.png

QmitkRemeshing_Icon.png

QmitkRemeshing_NoBoundaryFixing10Percent.png

QmitkRemeshing_OriginalMesh.png

QmitkRemeshing_RemeshingView.png

QmitkRemeshing_Subsampling20percent.png

QmitkRemeshing_cylinder.png

resources/

RemeshingIcon.png

QmitkClippingPlane_Icon.png

org.mitk.gui.qt.segmentation/

documentation/

UserManual/

QmitkClippingPlane_Overview2.png

QmitkSegmentationUtilities_IMGBooleanOperations.png

QmitkSegmentationUtilities_IMGImageMasking.png

QmitkSegmentationUtilities_IMGMorphologicalOperators.png

QmitkSegmentationUtilities_IMGSurfaceToImage.png

QmitkSegmentationUtilities_Overview.png

QmitkSegmentation_3DFMTool.png

QmitkSegmentation_3DInterpolationWrongRight.png

QmitkSegmentation_3DOtsuTool.png

QmitkSegmentation_3DRGTool.png

QmitkSegmentation_3DThresholdTool.png

QmitkSegmentation_3DTools.png

QmitkSegmentation_3DULThresholdTool.png

QmitkSegmentation_3DWatershedTool.png

QmitkSegmentation_FromSurfaceAfter.png

QmitkSegmentation_FromSurfaceBefore.png

QmitkSegmentation_IMG2DFastMarchingUsage.png

QmitkSegmentation_IMGApplication.png

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resources/

SegmentationUtilities.qrc

QmitkDataSelectionWidget.cpp

src/

internal/

Common/

QmitkDataSelectionWidget.h

QmitkDeformableClippingPlaneView.cpp

SegmentationUtilities/

ContourModelToImage

QmitkContourModelToImageWidget.cpp

QmitkContourModelToImageWidget.h

QmitkContourModelToImageWidgetControls.ui

QmitkSegmentationUtilitiesView.cpp

QmitkSegmentationUtilitiesView.h

org.mitk.gui.qt.simulation/

QmitkSimulationViewControls.ui

resources/

Node_16x16.png

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src/

internal/

QmitkSimulationView.cpp

QmitkSimulationView.h

org.mitk.gui.qt.stdmultiwidgeteditor/

QmitkStdMultiWidgetEditor.cpp

src/

QmitkStdMultiWidgetEditor.h

QmitkStdMultiWidgetEditorPreferencePage.cpp

internal/

QmitkStdMultiWidgetEditorPreferencePage.h

QmitkStdMultiWidgetEditorPreferencePage.ui

org.mitk.gui.qt.toftutorial/

documentation/

Manual/

icon.png

org.mitk.gui.qt.tofutil/

iconToFScrenshotMaker.xpm

plugin.xml

resources/

src/

internal/

QmitkToFImageBackground.cpp

QmitkToFImageBackground.h

QmitkToFScreenshotMaker.cpp

QmitkToFScreenshotMaker.h

QmitkToFScreenshotMakerControls.ui

QmitkToFUtilView.cpp

mitkPluginActivator.cpp

org.mitk.gui.qt.volumevisualization/

documentation/

UserManual/

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org.mitk.simulation/

README.md

SuperBuild.cmake

rMITK0eb7852b6d51

.gitignore

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BlueBerry/Bundles/org.blueberry.osgi/src/berryObjectVector.h

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BlueBerry/Bundles/org.blueberry.ui.qt.help/src/internal/berryHelpPerspective.cpp

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BlueBerry/Bundles/org.blueberry.ui.qt/src/berryQCHPluginListener.cpp

BlueBerry/Bundles/org.blueberry.ui.qt/src/internal/util/berryPresentablePartFolder.cpp

BlueBerry/Bundles/org.blueberry.ui/src/handlers/berryIHandlerService.h

BlueBerry/Bundles/org.blueberry.ui/src/internal/berryPartStack.cpp

BlueBerry/Bundles/org.blueberry.ui/src/internal/berrySaveablesList.cpp

BlueBerry/Bundles/org.blueberry.ui/src/internal/berryWorkbenchWindow.cpp

BlueBerry/Bundles/org.blueberry.ui/src/util/berrySafeRunnable.cpp

BlueBerry/CMake/MacroCreateCTKPlugin.cmake

BlueBerry/CMakeLists.txt

CMake/BuildConfigurations/All.cmake

CMake/BuildConfigurations/Default.cmake

CMake/BuildConfigurations/WorkbenchRelease.cmake

CMake/BuildConfigurations/mitkDiffusion.cmake

CMake/MITKDashboardSetup.cmake

CMake/PackageDepends/MITK_ITK_Config.cmake

CMake/PackageDepends/MITK_Redland_Config.cmake

CMake/Whitelists/Minimal.cmake

CMake/mitkBuildConfigurationAll.cmake

CMake/mitkBuildConfigurationDefault.cmake

CMake/mitkBuildConfigurationWorkbenchRelease.cmake

CMake/mitkBuildConfigurationmitkDiffusion.cmake

CMake/mitkFunctionEnableBuildConfiguration.cmake

CMake/mitkFunctionGetLibrarySearchPaths.cmake

CMake/mitkFunctionUseModules.cmake

CMake/mitkFunctionWhitelists.cmake

CMakeExternals/ANN.cmake

CMakeExternals/Eigen.cmake

CMakeExternals/MITKData.cmake

CMakeExternals/OpenCV.cmake

CMakeExternals/PCRE.cmake

CMakeExternals/PatchQwt-6.1.0.cmake

CMakeExternals/PatchSOFA-386a3a7.cmake

CMakeExternals/PatchSOFA-rev10669.cmake

CMakeExternals/Qwt.cmake

CMakeExternals/SOFA.cmake

CMakeExternals/Swig.cmake

CMakeExternals/raptor2-2.0.15.patch

CMakeExternals/raptor2.cmake

CMakeExternals/rasqal-0.9.32.patch

CMakeExternals/rasqal.cmake

CMakeExternals/redland-1.0.17.patch

CMakeExternals/redland.cmake

CMakeLists.txt

Core/Code/Algorithms/mitkExtractSliceFilter.cpp

Core/Code/Algorithms/mitkExtractSliceFilter.h

Core/Code/Common/mitkCoreObjectFactory.cpp

Core/Code/Controllers/mitkVtkLayerController.cpp

Core/Code/Controllers/mitkVtkLayerController.h

Core/Code/DataManagement/mitkAbstractTransformGeometry.cpp

Core/Code/DataManagement/mitkAbstractTransformGeometry.h

Core/Code/DataManagement/mitkAffineTransform3D.h

Core/Code/DataManagement/mitkBaseGeometry.cpp

Core/Code/DataManagement/mitkBaseGeometry.h

Core/Code/DataManagement/mitkColorProperty.h

Core/Code/DataManagement/mitkDisplayGeometry.h

Core/Code/DataManagement/mitkGeometry3D.h

Core/Code/DataManagement/mitkGeometryTransformHolder.cpp

Core/Code/DataManagement/mitkGeometryTransformHolder.h

Core/Code/DataManagement/mitkImage.cpp

Core/Code/DataManagement/mitkImagePixelWriteAccessor.h

Core/Code/DataManagement/mitkImageStatisticsHolder.cpp

Core/Code/DataManagement/mitkImageStatisticsHolder.h

Core/Code/DataManagement/mitkLandmarkProjectorBasedCurvedGeometry.h

Core/Code/DataManagement/mitkLine.h

Core/Code/DataManagement/mitkPlaneGeometry.cpp

Core/Code/DataManagement/mitkPlaneGeometry.h

Core/Code/DataManagement/mitkSlicedGeometry3D.cpp

Core/Code/DataManagement/mitkSlicedGeometry3D.h

Core/Code/DataManagement/mitkThinPlateSplineCurvedGeometry.h

Core/Code/IO/mitkAbstractFileIO.h

Core/Code/IO/mitkCustomMimeType.h

Core/Code/IO/mitkFileReader.h

Core/Code/IO/mitkFileWriter.h

Core/Code/IO/mitkFileWriterSelector.cpp

Core/Code/IO/mitkIFileIO.h

Core/Code/IO/mitkIOAdapter.h

Core/Code/IO/mitkIOConstants.h

Core/Code/IO/mitkIOMimeTypes.h

Core/Code/IO/mitkImageGenerator.h

Core/Code/IO/mitkLocaleSwitch.h

Core/Code/IO/mitkMimeType.h

Core/Code/IO/mitkVtkLoggingAdapter.h

Core/Code/Interactions/mitkMouseMovePointSetInteractor.h

Core/Code/Interfaces/mitkIFileReader.h

Core/Code/Interfaces/mitkIFileWriter.h

Core/Code/Interfaces/mitkIMimeTypeProvider.h

Core/Code/Interfaces/mitkIPersistenceService.h

Core/Code/Interfaces/mitkIPropertyAliases.h

Core/Code/Interfaces/mitkIPropertyDescriptions.h

Core/Code/Interfaces/mitkIPropertyExtensions.h

Core/Code/Interfaces/mitkIPropertyFilters.h

Core/Code/Interfaces/mitkIShaderRepository.h

Core/Code/Interfaces/mitkInteractionEventObserver.h

Core/Code/Internal/mitkItkImageIO.cpp

Core/Code/Internal/mitkPointSetReaderService.cpp

Core/Code/Internal/mitkPointSetReaderService.h

Core/Code/Internal/mitkPointSetWriterService.h

Core/Code/Internal/mitkSurfaceVtkIO.h

Core/Code/Rendering/mitkGL.h

Core/Code/Rendering/mitkGLMapper.cpp

Core/Code/Rendering/mitkGLMapper.h

Core/Code/Rendering/mitkGLMapper2D.h

Core/Code/Rendering/mitkGradientBackground.cpp

Core/Code/Rendering/mitkGradientBackground.h

Core/Code/Rendering/mitkOverlay.cpp

Core/Code/Rendering/mitkOverlay.h

Core/Code/Rendering/mitkOverlayManager.cpp

Core/Code/Rendering/mitkOverlayManager.h

Core/Code/Rendering/mitkPlaneGeometryDataMapper2D.cpp

Core/Code/Rendering/mitkPlaneGeometryDataMapper2D.h

Core/Code/Rendering/mitkPlaneGeometryDataVtkMapper3D.cpp

Core/Code/Rendering/mitkPointSetGLMapper2D.cpp

Core/Code/Rendering/mitkPointSetGLMapper2D.h

Core/Code/Rendering/mitkRenderWindowFrame.cpp

Core/Code/Rendering/mitkRenderWindowFrame.h

Core/Code/Rendering/mitkSurfaceGLMapper2D.cpp

Core/Code/Rendering/mitkSurfaceGLMapper2D.h

Core/Code/Rendering/mitkSurfaceVtkMapper2D.cpp

Core/Code/Rendering/mitkSurfaceVtkMapper2D.h

Core/Code/Rendering/mitkVtkOverlay.cpp

Core/Code/Rendering/mitkVtkOverlay.h

Core/Code/Rendering/mitkVtkOverlay2D.h

Core/Code/Rendering/mitkVtkPropRenderer.cpp

Core/Code/Rendering/mitkVtkPropRenderer.h

Core/Code/Rendering/vtkMitkRectangleProp.cpp

Core/Code/Rendering/vtkMitkRectangleProp.h

Core/Code/Rendering/vtkMitkRenderProp.cpp

Core/Code/Testing/CMakeLists.txt

Core/Code/Testing/files.cmake

Core/Code/Testing/mitkBaseGeometryTest.cpp

Core/Code/Testing/mitkDataNodeTest.cpp

Core/Code/Testing/mitkImageTest.cpp

Core/Code/Testing/mitkSurfaceGLMapper2DColorTest.cpp

Core/Code/Testing/mitkSurfaceGLMapper2DOpacityTest.cpp

Core/Code/Testing/mitkSurfaceVtkMapper2DColorTest.cpp

Core/Code/Testing/mitkSurfaceVtkMapper2DOpacityTest.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkControlVisualizationPropertiesView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkDenoisingView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkDenoisingView.h

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkDiffusionDicomImportView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkDiffusionRegistrationView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkDiffusionRegistrationView.h

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkDwiSoftwarePhantomView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberExtractionView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberExtractionView.h

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberExtractionViewControls.ui

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Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberProcessingView.h

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberProcessingViewControls.ui

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Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberQuantificationView.h

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberQuantificationViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberfoxView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkFiberfoxView.h

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Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkODFDetailsView.h

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkOdfMaximaExtractionView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkPartialVolumeAnalysisView.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkQBallReconstructionView.h

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Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkStochasticFiberTrackingView.h

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Plugins/org.mitk.gui.qt.extapplication/src/internal/QmitkMitkWorkbenchIntroPart.h

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Plugins/org.mitk.gui.qt.geometrytools/src/internal/org_mitk_gui_qt_geometrytools_Activator.cpp

Plugins/org.mitk.gui.qt.geometrytools/src/internal/org_mitk_gui_qt_geometrytools_Activator.h

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Plugins/org.mitk.gui.qt.registration/src/internal/QmitkRigidRegistrationView.cpp

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Plugins/org.mitk.gui.qt.segmentation/files.cmake

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Plugins/org.mitk.gui.qt.segmentation/resources/SegmentationUtilities.qrc

Plugins/org.mitk.gui.qt.segmentation/src/internal/Common/QmitkDataSelectionWidget.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/Common/QmitkDataSelectionWidget.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkDeformableClippingPlaneView.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/SegmentationUtilities/ContourModelToImage/QmitkContourModelToImageWidget.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/SegmentationUtilities/ContourModelToImage/QmitkContourModelToImageWidget.h

Plugins/org.mitk.gui.qt.segmentation/src/internal/SegmentationUtilities/ContourModelToImage/QmitkContourModelToImageWidgetControls.ui

Plugins/org.mitk.gui.qt.segmentation/src/internal/SegmentationUtilities/QmitkSegmentationUtilitiesView.cpp

Plugins/org.mitk.gui.qt.segmentation/src/internal/SegmentationUtilities/QmitkSegmentationUtilitiesView.h

Plugins/org.mitk.gui.qt.simulation/CMakeLists.txt

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Plugins/org.mitk.gui.qt.simulation/src/internal/QmitkSimulationView.cpp

Plugins/org.mitk.gui.qt.simulation/src/internal/QmitkSimulationView.h

Plugins/org.mitk.gui.qt.simulation/src/internal/QmitkSimulationViewControls.ui

Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/files.cmake

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Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/QmitkStdMultiWidgetEditor.h

Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/internal/QmitkStdMultiWidgetEditorPreferencePage.cpp

Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/internal/QmitkStdMultiWidgetEditorPreferencePage.h

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Plugins/org.mitk.gui.qt.tofutil/resources/iconToFScrenshotMaker.xpm

Plugins/org.mitk.gui.qt.tofutil/src/internal/QmitkToFImageBackground.cpp

Plugins/org.mitk.gui.qt.tofutil/src/internal/QmitkToFImageBackground.h

Plugins/org.mitk.gui.qt.tofutil/src/internal/QmitkToFScreenshotMaker.cpp

Plugins/org.mitk.gui.qt.tofutil/src/internal/QmitkToFScreenshotMaker.h

Plugins/org.mitk.gui.qt.tofutil/src/internal/QmitkToFScreenshotMakerControls.ui

Plugins/org.mitk.gui.qt.tofutil/src/internal/QmitkToFUtilView.cpp

Plugins/org.mitk.gui.qt.tofutil/src/internal/mitkPluginActivator.cpp

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Plugins/org.mitk.simulation/CMakeLists.txt

README.md

SuperBuild.cmake