diff --git a/Plugins/org.mitk.gui.qt.radiomics/documentation/UserManual/QmitkPhenotypingPortalPage.dox b/Plugins/org.mitk.gui.qt.radiomics/documentation/UserManual/QmitkPhenotypingPortalPage.dox index 69c9dce5b6..aebb075d1b 100644 --- a/Plugins/org.mitk.gui.qt.radiomics/documentation/UserManual/QmitkPhenotypingPortalPage.dox +++ b/Plugins/org.mitk.gui.qt.radiomics/documentation/UserManual/QmitkPhenotypingPortalPage.dox @@ -1,41 +1,41 @@ /** \page org_mitk_gui_qt_mitkphenotyping The Phenotyping \tableofcontents MITK Phenotyping is a selection of algorithms that can be used to extract image-based phenotypes, for example using a radiomics approach. The software is part of the research of the Division of Medical Image Computing of the German Cancer Research Center (DKFZ). MITK Phenotyping is not intended to be a single application, it is rather a collection of the necessary plugins within the offical MITK releases. The functionality of MITK Phenotyping can be accessed in different ways: Using the graphical interface using the Plugins listed below, using command line applications, or using one of the programming interfaces. \section org_mitk_gui_qt_mitkphenotyping_Tutorials Tutorials \li \subpage org_mitk_views_radiomicstutorial_gui_portal A tutorial on how to use the grapical interface of MITK Phenotying \section org_mitk_gui_qt_mitkphenotyping_Views Views \subsection sub2 Specific Views: Views that were developed with the main focus on Radiomics. They still might be used in other use-cases as well: \li \subpage org_mitk_views_radiomicstransformationview : Image transformations like Resampling, Laplacian of Gaussian, and Wavelet Transformations \li \subpage org_mitk_views_radiomicsmaskprocessingview : Processing and Cleaning of Masks \li \subpage org_mitk_views_radiomicsarithmetricview : Processing images using mathematical operations \li \subpage org_mitk_views_radiomicsstatisticview : Calculate Radiomics Features \subsection sub1 Non-Specific Views: This section contains views that are included within MITK Phenotyping, but were developed with a broader application in mind. -\li \subpage org_mitk_views_basicimageprocessing : Deprecated plugin for performing different image-related tasks like subtraction, mutliplaction, filtering etc. -\li \subpage org_mitk_views_matchpoint_algorithm_browser : Selection of MatchPoint (Registration) Algorithm -\li \subpage org_mitk_views_matchpoint_algorithm_control : Configuring and Controlling MatchPoint (Registration) Algorithm -\li \subpage org_mitk_views_matchpoint_evaluator : Evaluate the Registration performance using MatchPoint -\li \subpage org_mitk_views_matchpoint_manipulator : Adapt a registration calculated using MatchPoint -\li \subpage org_mitk_views_matchpoint_mapper : Apply a MatchPoint Registration to a specific image -\li \subpage org_mitk_views_matchpoint_visualizer : Visualize a Registration obtained with MatchPoint -\li \subpage org_mitk_views_matchpoint_algorithm_batch : Running MatchPoint over multiple images (BatchMode) -\li \subpage org_mitk_views_multilabelsegmentation : Create and editing of Multilabel-Segmentations. -\li \subpage org_mitk_views_segmentation : Create simple segmentations -\li \subpage org_mitk_views_segmentationutilities : Utilities for the processing of simple segmentations. +\li \ref org_mitk_views_basicimageprocessing : Deprecated plugin for performing different image-related tasks like subtraction, mutliplaction, filtering etc. +\li \ref org_mitk_views_matchpoint_algorithm_browser : Selection of MatchPoint (Registration) Algorithm +\li \ref org_mitk_views_matchpoint_algorithm_control : Configuring and Controlling MatchPoint (Registration) Algorithm +\li \ref org_mitk_views_matchpoint_evaluator : Evaluate the Registration performance using MatchPoint +\li \ref org_mitk_views_matchpoint_manipulator : Adapt a registration calculated using MatchPoint +\li \ref org_mitk_views_matchpoint_mapper : Apply a MatchPoint Registration to a specific image +\li \ref org_mitk_views_matchpoint_visualizer : Visualize a Registration obtained with MatchPoint +\li \ref org_mitk_views_matchpoint_algorithm_batch : Running MatchPoint over multiple images (BatchMode) +\li \ref org_mitk_views_multilabelsegmentation : Create and editing of Multilabel-Segmentations. +\li \ref org_mitk_views_segmentation : Create simple segmentations +\li \ref org_mitk_views_segmentationutilities : Utilities for the processing of simple segmentations. \section radiomics_miniapps MiniApps (Command line Tools) \li \subpage MiniAppExplainPage Explanation of the Command Line App concept in MITK \li \subpage mitkBasicImageProcessingMiniAppsPortalPage : List of common preprocessing MiniApps \li \subpage mitkClassificationMiniAppsPortalPage : (Incomplete) list of MITK Classification MiniApps */