diff --git a/CMake/BuildConfigurations/All.cmake b/CMake/BuildConfigurations/All.cmake index a5874dca61..6a8d90677e 100644 --- a/CMake/BuildConfigurations/All.cmake +++ b/CMake/BuildConfigurations/All.cmake @@ -1,59 +1,59 @@ set(MITK_CONFIG_PACKAGES ) set(_apple_package_excludes) set(_package_excludes ${_apple_package_excludes} OpenCL SYSTEM_Boost Boost_LIBRARIES SYSTEM_PYTHON SUPERBUILD BiophotonicsHardware_SpectroCam POLHEMUS_TRACKER US_DiPhAS_SDK GALIL_HARDWARE - OPHIR_PRYO_HARDWARE + OPHIR_PYRO_HARDWARE MICROBIRD_TRACKER MICROBIRD_TRACKER_INCLUDE_DIR MICROBIRD_TRACKER_LIB MICRON_TRACKER OPTITRACK_TRACKER SPACENAVIGATOR TOF_KINECT TOF_KINECTV2 TOF_MESASR4000 TOF_PMDCAMBOARD TOF_PMDCAMCUBE TOF_PMDO3 US_TELEMED_SDK videoInput WIIMOTE ) get_cmake_property(_cache_vars CACHE_VARIABLES) foreach(_cache_var ${_cache_vars}) string(REGEX REPLACE "MITK_USE_(.+)" "\\1" _package "${_cache_var}") if(_package AND NOT _package STREQUAL _cache_var) list(FIND _package_excludes ${_package} _index) if(_index EQUAL -1) list(APPEND MITK_CONFIG_PACKAGES ${_package}) endif() endif() endforeach() set(MITK_BUILD_ALL_APPS ON CACHE BOOL "Build all MITK applications" FORCE) set(MITK_BUILD_ALL_PLUGINS ON CACHE BOOL "Build all MITK plugins" FORCE) set(MITK_BUILD_EXAMPLES ON CACHE BOOL "Build the MITK examples" FORCE) set(BLUEBERRY_BUILD_ALL_PLUGINS ON CACHE BOOL "Build all BlueBerry plugins" FORCE) set(BUILD_DiffusionCoreCmdApps ON CACHE BOOL "Build commandline tools for diffusion" FORCE) set(BUILD_DiffusionFiberProcessingCmdApps ON CACHE BOOL "Build commandline tools for diffusion fiber processing" FORCE) set(BUILD_DiffusionFiberfoxCmdApps ON CACHE BOOL "Build commandline tools for diffusion data simulation (Fiberfox)" FORCE) set(BUILD_DiffusionMiscCmdApps ON CACHE BOOL "Build miscellaneous commandline tools for diffusion" FORCE) set(BUILD_DiffusionQuantificationCmdApps ON CACHE BOOL "Build commandline tools for diffusion quantification (IVIM, ADC, ...)" FORCE) set(BUILD_DiffusionTractographyCmdApps ON CACHE BOOL "Build commandline tools for diffusion fiber tractography" FORCE) set(BUILD_DiffusionTractographyEvaluationCmdApps ON CACHE BOOL "Build commandline tools for diffusion fiber tractography evaluation" FORCE) set(BUILD_DiffusionConnectomicsCmdApps ON CACHE BOOL "Build commandline tools for diffusion connectomics" FORCE) diff --git a/Plugins/org.mitk.gui.qt.diffusionimaging.connectomics/documentation/UserManual/ConnectomicsManual.dox b/Plugins/org.mitk.gui.qt.diffusionimaging.connectomics/documentation/UserManual/ConnectomicsManual.dox index ef911183fc..ffeae7d831 100644 --- a/Plugins/org.mitk.gui.qt.diffusionimaging.connectomics/documentation/UserManual/ConnectomicsManual.dox +++ b/Plugins/org.mitk.gui.qt.diffusionimaging.connectomics/documentation/UserManual/ConnectomicsManual.dox @@ -1,153 +1,1421 @@ /** \page org_mitk_diffusionimagingapp_perspectives_connectomics The Connectomics Perspective \imageMacro{connectomics_perspective.png,"Icon of the Connectomics Perspective",2.00} The connectomics perspective is a collection of views which provide functionality for the work with brain connectivity networks. Currently there exist the following views: \subpage org_mitk_views_connectomicsdata provides network generation either from data or synthetically. \subpage org_mitk_views_connectomicsnetworkoperations provides functionalies to operate and process on networks and other data. \subpage org_mitk_views_connectomicsstatistics provides statistical measures for networks. \subpage org_mitk_views_randomparcellationview provides a method to randomly parcellate a segmentation using different criteria \section org_mitk_diffusionimagingapp_perspectives_connectomicsNetworkRenderingCustomization Network Rendering Customization The rendering of the connectomics networks can be customized by changing the associated properties using the property list. A selection of possible options are: \section org_mitk_diffusionimagingapp_perspectives_connectomicsTrouble Troubleshooting No known problems. All other problems.
Please report to the MITK mailing list. See http://www.mitk.org/wiki/Mailinglist on how to do this. */ /** \page org_mitk_views_connectomicsdata The Connectomics Network Data View \imageMacro{QmitkConnectomicsDataViewIcon_48.png,"Icon of the Connectomics Network Data View",2.00} This view can be used to create a network from a parcellation and a fiber image as well as to create synthetic networks. \imageMacro{dataview.png,"The user interface",4.85} To create a network select first a parcellation of the brain (e.g. as provided by freesurfer ) by CTRL+Leftclick and secondly a fiber image ( as created using a tractography view). Then click on the "Create Network" button. Additionally you have the option to create artificial networks, for testing purposes. Currently choices are: +Parcellation labels lookup table: +- 0 = "Unknown" +- 1 = "Left-Cerebral-Exterior" +- 2 = "Left-Cerebral-White-Matter" +- 3 = "Left-Cerebral-Cortex" +- 4 = "Left-Lateral-Ventricle" +- 5 = "Left-Inf-Lat-Vent" +- 6 = "Left-Cerebellum-Exterior" +- 7 = "Left-Cerebellum-White-Matter" +- 8 = "Left-Cerebellum-Cortex" +- 9 = "Left-Thalamus" +- 10 = "Left-Thalamus-Proper" +- 11 = "Left-Caudate" +- 12 = "Left-Putamen" +- 13 = "Left-Pallidum" +- 14 = "3rd-Ventricle" +- 15 = "4th-Ventricle" +- 16 = "Brain-Stem" +- 17 = "Left-Hippocampus" +- 18 = "Left-Amygdala" +- 19 = "Left-Insula" +- 20 = "Left-Operculum" +- 21 = "Line-1" +- 22 = "Line-2" +- 23 = "Line-3" +- 24 = "CSF" +- 25 = "Left-Lesion" +- 26 = "Left-Accumbens-area" +- 27 = "Left-Substancia-Nigra" +- 28 = "Left-VentralDC" +- 29 = "Left-undetermined" +- 30 = "Left-vessel" +- 31 = "Left-choroid-plexus" +- 32 = "Left-F3orb" +- 33 = "Left-lOg" +- 34 = "Left-aOg" +- 35 = "Left-mOg" +- 36 = "Left-pOg" +- 37 = "Left-Stellate" +- 38 = "Left-Porg" +- 39 = "Left-Aorg" +- 40 = "Right-Cerebral-Exterior" +- 41 = "Right-Cerebral-White-Matter" +- 42 = "Right-Cerebral-Cortex" +- 43 = "Right-Lateral-Ventricle" +- 44 = "Right-Inf-Lat-Vent" +- 45 = "Right-Cerebellum-Exterior" +- 46 = "Right-Cerebellum-White-Matter" +- 47 = "Right-Cerebellum-Cortex" +- 48 = "Right-Thalamus" +- 49 = "Right-Thalamus-Proper" +- 50 = "Right-Caudate" +- 51 = "Right-Putamen" +- 52 = "Right-Pallidum" +- 53 = "Right-Hippocampus" +- 54 = "Right-Amygdala" +- 55 = "Right-Insula" +- 56 = "Right-Operculum" +- 57 = "Right-Lesion" +- 58 = "Right-Accumbens-area" +- 59 = "Right-Substancia-Nigra" +- 60 = "Right-VentralDC" +- 61 = "Right-undetermined" +- 62 = "Right-vessel" +- 63 = "Right-choroid-plexus" +- 64 = "Right-F3orb" +- 65 = "Right-lOg" +- 66 = "Right-aOg" +- 67 = "Right-mOg" +- 68 = "Right-pOg" +- 69 = "Right-Stellate" +- 70 = "Right-Porg" +- 71 = "Right-Aorg" +- 72 = "5th-Ventricle" +- 73 = "Left-Interior" +- 74 = "Right-Interior" +- 77 = "WM-hypointensities" +- 78 = "Left-WM-hypointensities" +- 79 = "Right-WM-hypointensities" +- 80 = "non-WM-hypointensities" +- 81 = "Left-non-WM-hypointensities" +- 82 = "Right-non-WM-hypointensities" +- 83 = "Left-F1" +- 84 = "Right-F1" +- 85 = "Optic-Chiasm" +- 192 = "Corpus_Callosum" +- 86 = "Left_future_WMSA" +- 87 = "Right_future_WMSA" +- 88 = "future_WMSA" +- 96 = "Left-Amygdala-Anterior" +- 97 = "Right-Amygdala-Anterior" +- 98 = "Dura" +- 100 = "Left-wm-intensity-abnormality" +- 101 = "Left-caudate-intensity-abnormality" +- 102 = "Left-putamen-intensity-abnormality" +- 103 = "Left-accumbens-intensity-abnormality" +- 104 = "Left-pallidum-intensity-abnormality" +- 105 = "Left-amygdala-intensity-abnormality" +- 106 = "Left-hippocampus-intensity-abnormality" +- 107 = "Left-thalamus-intensity-abnormality" +- 108 = "Left-VDC-intensity-abnormality" +- 109 = "Right-wm-intensity-abnormality" +- 110 = "Right-caudate-intensity-abnormality" +- 111 = "Right-putamen-intensity-abnormality" +- 112 = "Right-accumbens-intensity-abnormality" +- 113 = "Right-pallidum-intensity-abnormality" +- 114 = "Right-amygdala-intensity-abnormality" +- 115 = "Right-hippocampus-intensity-abnormality" +- 116 = "Right-thalamus-intensity-abnormality" +- 117 = "Right-VDC-intensity-abnormality" +- 118 = "Epidermis" +- 119 = "Conn-Tissue" +- 120 = "SC-Fat-Muscle" +- 121 = "Cranium" +- 122 = "CSF-SA" +- 123 = "Muscle" +- 124 = "Ear" +- 125 = "Adipose" +- 126 = "Spinal-Cord" +- 127 = "Soft-Tissue" +- 128 = "Nerve" +- 129 = "Bone" +- 130 = "Air" +- 131 = "Orbital-Fat" +- 132 = "Tongue" +- 133 = "Nasal-Structures" +- 134 = "Globe" +- 135 = "Teeth" +- 136 = "Left-Caudate-Putamen" +- 137 = "Right-Caudate-Putamen" +- 138 = "Left-Claustrum" +- 139 = "Right-Claustrum" +- 140 = "Cornea" +- 142 = "Diploe" +- 143 = "Vitreous-Humor" +- 144 = "Lens" +- 145 = "Aqueous-Humor" +- 146 = "Outer-Table" +- 147 = "Inner-Table" +- 148 = "Periosteum" +- 149 = "Endosteum" +- 150 = "R-C-S" +- 151 = "Iris" +- 152 = "SC-Adipose-Muscle" +- 153 = "SC-Tissue" +- 154 = "Orbital-Adipose" +- 155 = "Left-IntCapsule-Ant" +- 156 = "Right-IntCapsule-Ant" +- 157 = "Left-IntCapsule-Pos" +- 158 = "Right-IntCapsule-Pos" +- 159 = "Left-Cerebral-WM-unmyelinated" +- 160 = "Right-Cerebral-WM-unmyelinated" +- 161 = "Left-Cerebral-WM-myelinated" +- 162 = "Right-Cerebral-WM-myelinated" +- 163 = "Left-Subcortical-Gray-Matter" +- 164 = "Right-Subcortical-Gray-Matter" +- 165 = "Skull" +- 166 = "Posterior-fossa" +- 167 = "Scalp" +- 168 = "Hematoma" +- 169 = "Left-Basal-Ganglia" +- 176 = "Right-Basal-Ganglia" +- 170 = "brainstem" +- 171 = "DCG" +- 172 = "Vermis" +- 173 = "Midbrain" +- 174 = "Pons" +- 175 = "Medulla" +- 180 = "Left-Cortical-Dysplasia" +- 181 = "Right-Cortical-Dysplasia" +- 193 = "Left-hippocampal_fissure" +- 194 = "Left-CADG-head" +- 195 = "Left-subiculum" +- 196 = "Left-fimbria" +- 197 = "Right-hippocampal_fissure" +- 198 = "Right-CADG-head" +- 199 = "Right-subiculum" +- 200 = "Right-fimbria" +- 201 = "alveus" +- 202 = "perforant_pathway" +- 203 = "parasubiculum" +- 204 = "presubiculum" +- 205 = "subiculum" +- 206 = "CA1" +- 207 = "CA2" +- 208 = "CA3" +- 209 = "CA4" +- 210 = "GC-ML-DG" +- 211 = "HATA" +- 212 = "fimbria" +- 213 = "lateral_ventricle" +- 214 = "molecular_layer_HP" +- 215 = "hippocampal_fissure" +- 216 = "entorhinal_cortex" +- 217 = "molecular_layer_subiculum" +- 218 = "Amygdala" +- 219 = "Cerebral_White_Matter" +- 220 = "Cerebral_Cortex" +- 221 = "Inf_Lat_Vent" +- 222 = "Perirhinal" +- 223 = "Cerebral_White_Matter_Edge" +- 224 = "Background" +- 225 = "Ectorhinal" +- 226 = "HP_tail" +- 250 = "Fornix" +- 251 = "CC_Posterior" +- 252 = "CC_Mid_Posterior" +- 253 = "CC_Central" +- 254 = "CC_Mid_Anterior" +- 255 = "CC_Anterior" +- 256 = "Voxel-Unchanged" +- 331 = "Aorta" +- 332 = "Left-Common-IliacA" +- 333 = "Right-Common-IliacA" +- 334 = "Left-External-IliacA" +- 335 = "Right-External-IliacA" +- 336 = "Left-Internal-IliacA" +- 337 = "Right-Internal-IliacA" +- 338 = "Left-Lateral-SacralA" +- 339 = "Right-Lateral-SacralA" +- 340 = "Left-ObturatorA" +- 341 = "Right-ObturatorA" +- 342 = "Left-Internal-PudendalA" +- 343 = "Right-Internal-PudendalA" +- 344 = "Left-UmbilicalA" +- 345 = "Right-UmbilicalA" +- 346 = "Left-Inf-RectalA" +- 347 = "Right-Inf-RectalA" +- 348 = "Left-Common-IliacV" +- 349 = "Right-Common-IliacV" +- 350 = "Left-External-IliacV" +- 351 = "Right-External-IliacV" +- 352 = "Left-Internal-IliacV" +- 353 = "Right-Internal-IliacV" +- 354 = "Left-ObturatorV" +- 355 = "Right-ObturatorV" +- 356 = "Left-Internal-PudendalV" +- 357 = "Right-Internal-PudendalV" +- 358 = "Pos-Lymph" +- 359 = "Neg-Lymph" +- 400 = "V1" +- 401 = "V2" +- 402 = "BA44" +- 403 = "BA45" +- 404 = "BA4a" +- 405 = "BA4p" +- 406 = "BA6" +- 407 = "BA2" +- 408 = "BA1_old" +- 409 = "BAun2" +- 410 = "BA1" +- 411 = "BA2b" +- 412 = "BA3a" +- 413 = "BA3b" +- 414 = "MT" +- 415 = "AIPS_AIP_l" +- 416 = "AIPS_AIP_r" +- 417 = "AIPS_VIP_l" +- 418 = "AIPS_VIP_r" +- 419 = "IPL_PFcm_l" +- 420 = "IPL_PFcm_r" +- 421 = "IPL_PF_l" +- 422 = "IPL_PFm_l" +- 423 = "IPL_PFm_r" +- 424 = "IPL_PFop_l" +- 425 = "IPL_PFop_r" +- 426 = "IPL_PF_r" +- 427 = "IPL_PFt_l" +- 428 = "IPL_PFt_r" +- 429 = "IPL_PGa_l" +- 430 = "IPL_PGa_r" +- 431 = "IPL_PGp_l" +- 432 = "IPL_PGp_r" +- 433 = "Visual_V3d_l" +- 434 = "Visual_V3d_r" +- 435 = "Visual_V4_l" +- 436 = "Visual_V4_r" +- 437 = "Visual_V5_b" +- 438 = "Visual_VP_l" +- 439 = "Visual_VP_r" +- 498 = "wmsa" +- 499 = "other_wmsa" +- 500 = "right_CA2_3" +- 501 = "right_alveus" +- 502 = "right_CA1" +- 503 = "right_fimbria" +- 504 = "right_presubiculum" +- 505 = "right_hippocampal_fissure" +- 506 = "right_CA4_DG" +- 507 = "right_subiculum" +- 508 = "right_fornix" +- 550 = "left_CA2_3" +- 551 = "left_alveus" +- 552 = "left_CA1" +- 553 = "left_fimbria" +- 554 = "left_presubiculum" +- 555 = "left_hippocampal_fissure" +- 556 = "left_CA4_DG" +- 557 = "left_subiculum" +- 558 = "left_fornix" +- 600 = "Tumor" +- 601 = "Cbm_Left_I_IV" +- 602 = "Cbm_Right_I_IV" +- 603 = "Cbm_Left_V" +- 604 = "Cbm_Right_V" +- 605 = "Cbm_Left_VI" +- 606 = "Cbm_Vermis_VI" +- 607 = "Cbm_Right_VI" +- 608 = "Cbm_Left_CrusI" +- 609 = "Cbm_Vermis_CrusI" +- 610 = "Cbm_Right_CrusI" +- 611 = "Cbm_Left_CrusII" +- 612 = "Cbm_Vermis_CrusII" +- 613 = "Cbm_Right_CrusII" +- 614 = "Cbm_Left_VIIb" +- 615 = "Cbm_Vermis_VIIb" +- 616 = "Cbm_Right_VIIb" +- 617 = "Cbm_Left_VIIIa" +- 618 = "Cbm_Vermis_VIIIa" +- 619 = "Cbm_Right_VIIIa" +- 620 = "Cbm_Left_VIIIb" +- 621 = "Cbm_Vermis_VIIIb" +- 622 = "Cbm_Right_VIIIb" +- 623 = "Cbm_Left_IX" +- 624 = "Cbm_Vermis_IX" +- 625 = "Cbm_Right_IX" +- 626 = "Cbm_Left_X" +- 627 = "Cbm_Vermis_X" +- 628 = "Cbm_Right_X" +- 640 = "Cbm_Right_I_V_med" +- 641 = "Cbm_Right_I_V_mid" +- 642 = "Cbm_Right_VI_med" +- 643 = "Cbm_Right_VI_mid" +- 644 = "Cbm_Right_VI_lat" +- 645 = "Cbm_Right_CrusI_med" +- 646 = "Cbm_Right_CrusI_mid" +- 647 = "Cbm_Right_CrusI_lat" +- 648 = "Cbm_Right_CrusII_med" +- 649 = "Cbm_Right_CrusII_mid" +- 650 = "Cbm_Right_CrusII_lat" +- 651 = "Cbm_Right_7med" +- 652 = "Cbm_Right_7mid" +- 653 = "Cbm_Right_7lat" +- 654 = "Cbm_Right_8med" +- 655 = "Cbm_Right_8mid" +- 656 = "Cbm_Right_8lat" +- 657 = "Cbm_Right_PUNs" +- 658 = "Cbm_Right_TONs" +- 659 = "Cbm_Right_FLOs" +- 660 = "Cbm_Left_I_V_med" +- 661 = "Cbm_Left_I_V_mid" +- 662 = "Cbm_Left_VI_med" +- 663 = "Cbm_Left_VI_mid" +- 664 = "Cbm_Left_VI_lat" +- 665 = "Cbm_Left_CrusI_med" +- 666 = "Cbm_Left_CrusI_mid" +- 667 = "Cbm_Left_CrusI_lat" +- 668 = "Cbm_Left_CrusII_med" +- 669 = "Cbm_Left_CrusII_mid" +- 670 = "Cbm_Left_CrusII_lat" +- 671 = "Cbm_Left_7med" +- 672 = "Cbm_Left_7mid" +- 673 = "Cbm_Left_7lat" +- 674 = "Cbm_Left_8med" +- 675 = "Cbm_Left_8mid" +- 676 = "Cbm_Left_8lat" +- 677 = "Cbm_Left_PUNs" +- 678 = "Cbm_Left_TONs" +- 679 = "Cbm_Left_FLOs" +- 701 = "CSF-FSL-FAST" +- 702 = "GrayMatter-FSL-FAST" +- 703 = "WhiteMatter-FSL-FAST" +- 999 = "SUSPICIOUS" +- 1000 = "ctx-lh-unknown" +- 1001 = "ctx-lh-bankssts" +- 1002 = "ctx-lh-caudalanteriorcingulate" +- 1003 = "ctx-lh-caudalmiddlefrontal" +- 1004 = "ctx-lh-corpuscallosum" +- 1005 = "ctx-lh-cuneus" +- 1006 = "ctx-lh-entorhinal" +- 1007 = "ctx-lh-fusiform" +- 1008 = "ctx-lh-inferiorparietal" +- 1009 = "ctx-lh-inferiortemporal" +- 1010 = "ctx-lh-isthmuscingulate" +- 1011 = "ctx-lh-lateraloccipital" +- 1012 = "ctx-lh-lateralorbitofrontal" +- 1013 = "ctx-lh-lingual" +- 1014 = "ctx-lh-medialorbitofrontal" +- 1015 = "ctx-lh-middletemporal" +- 1016 = "ctx-lh-parahippocampal" +- 1017 = "ctx-lh-paracentral" +- 1018 = "ctx-lh-parsopercularis" +- 1019 = "ctx-lh-parsorbitalis" +- 1020 = "ctx-lh-parstriangularis" +- 1021 = "ctx-lh-pericalcarine" +- 1022 = "ctx-lh-postcentral" +- 1023 = "ctx-lh-posteriorcingulate" +- 1024 = "ctx-lh-precentral" +- 1025 = "ctx-lh-precuneus" +- 1026 = "ctx-lh-rostralanteriorcingulate" +- 1027 = "ctx-lh-rostralmiddlefrontal" +- 1028 = "ctx-lh-superiorfrontal" +- 1029 = "ctx-lh-superiorparietal" +- 1030 = "ctx-lh-superiortemporal" +- 1031 = "ctx-lh-supramarginal" +- 1032 = "ctx-lh-frontalpole" +- 1033 = "ctx-lh-temporalpole" +- 1034 = "ctx-lh-transversetemporal" +- 1035 = "ctx-lh-insula" +- 2000 = "ctx-rh-unknown" +- 2001 = "ctx-rh-bankssts" +- 2002 = "ctx-rh-caudalanteriorcingulate" +- 2003 = "ctx-rh-caudalmiddlefrontal" +- 2004 = "ctx-rh-corpuscallosum" +- 2005 = "ctx-rh-cuneus" +- 2006 = "ctx-rh-entorhinal" +- 2007 = "ctx-rh-fusiform" +- 2008 = "ctx-rh-inferiorparietal" +- 2009 = "ctx-rh-inferiortemporal" +- 2010 = "ctx-rh-isthmuscingulate" +- 2011 = "ctx-rh-lateraloccipital" +- 2012 = "ctx-rh-lateralorbitofrontal" +- 2013 = "ctx-rh-lingual" +- 2014 = "ctx-rh-medialorbitofrontal" +- 2015 = "ctx-rh-middletemporal" +- 2016 = "ctx-rh-parahippocampal" +- 2017 = "ctx-rh-paracentral" +- 2018 = "ctx-rh-parsopercularis" +- 2019 = "ctx-rh-parsorbitalis" +- 2020 = "ctx-rh-parstriangularis" +- 2021 = "ctx-rh-pericalcarine" +- 2022 = "ctx-rh-postcentral" +- 2023 = "ctx-rh-posteriorcingulate" +- 2024 = "ctx-rh-precentral" +- 2025 = "ctx-rh-precuneus" +- 2026 = "ctx-rh-rostralanteriorcingulate" +- 2027 = "ctx-rh-rostralmiddlefrontal" +- 2028 = "ctx-rh-superiorfrontal" +- 2029 = "ctx-rh-superiorparietal" +- 2030 = "ctx-rh-superiortemporal" +- 2031 = "ctx-rh-supramarginal" +- 2032 = "ctx-rh-frontalpole" +- 2033 = "ctx-rh-temporalpole" +- 2034 = "ctx-rh-transversetemporal" +- 2035 = "ctx-rh-insula" +- 3000 = "wm-lh-unknown" +- 3001 = "wm-lh-bankssts" +- 3002 = "wm-lh-caudalanteriorcingulate" +- 3003 = "wm-lh-caudalmiddlefrontal" +- 3004 = "wm-lh-corpuscallosum" +- 3005 = "wm-lh-cuneus" +- 3006 = "wm-lh-entorhinal" +- 3007 = "wm-lh-fusiform" +- 3008 = "wm-lh-inferiorparietal" +- 3009 = "wm-lh-inferiortemporal" +- 3010 = "wm-lh-isthmuscingulate" +- 3011 = "wm-lh-lateraloccipital" +- 3012 = "wm-lh-lateralorbitofrontal" +- 3013 = "wm-lh-lingual" +- 3014 = "wm-lh-medialorbitofrontal" +- 3015 = "wm-lh-middletemporal" +- 3016 = "wm-lh-parahippocampal" +- 3017 = "wm-lh-paracentral" +- 3018 = "wm-lh-parsopercularis" +- 3019 = "wm-lh-parsorbitalis" +- 3020 = "wm-lh-parstriangularis" +- 3021 = "wm-lh-pericalcarine" +- 3022 = "wm-lh-postcentral" +- 3023 = "wm-lh-posteriorcingulate" +- 3024 = "wm-lh-precentral" +- 3025 = "wm-lh-precuneus" +- 3026 = "wm-lh-rostralanteriorcingulate" +- 3027 = "wm-lh-rostralmiddlefrontal" +- 3028 = "wm-lh-superiorfrontal" +- 3029 = "wm-lh-superiorparietal" +- 3030 = "wm-lh-superiortemporal" +- 3031 = "wm-lh-supramarginal" +- 3032 = "wm-lh-frontalpole" +- 3033 = "wm-lh-temporalpole" +- 3034 = "wm-lh-transversetemporal" +- 3035 = "wm-lh-insula" +- 4000 = "wm-rh-unknown" +- 4001 = "wm-rh-bankssts" +- 4002 = "wm-rh-caudalanteriorcingulate" +- 4003 = "wm-rh-caudalmiddlefrontal" +- 4004 = "wm-rh-corpuscallosum" +- 4005 = "wm-rh-cuneus" +- 4006 = "wm-rh-entorhinal" +- 4007 = "wm-rh-fusiform" +- 4008 = "wm-rh-inferiorparietal" +- 4009 = "wm-rh-inferiortemporal" +- 4010 = "wm-rh-isthmuscingulate" +- 4011 = "wm-rh-lateraloccipital" +- 4012 = "wm-rh-lateralorbitofrontal" +- 4013 = "wm-rh-lingual" +- 4014 = "wm-rh-medialorbitofrontal" +- 4015 = "wm-rh-middletemporal" +- 4016 = "wm-rh-parahippocampal" +- 4017 = "wm-rh-paracentral" +- 4018 = "wm-rh-parsopercularis" +- 4019 = "wm-rh-parsorbitalis" +- 4020 = "wm-rh-parstriangularis" +- 4021 = "wm-rh-pericalcarine" +- 4022 = "wm-rh-postcentral" +- 4023 = "wm-rh-posteriorcingulate" +- 4024 = "wm-rh-precentral" +- 4025 = "wm-rh-precuneus" +- 4026 = "wm-rh-rostralanteriorcingulate" +- 4027 = "wm-rh-rostralmiddlefrontal" +- 4028 = "wm-rh-superiorfrontal" +- 4029 = "wm-rh-superiorparietal" +- 4030 = "wm-rh-superiortemporal" +- 4031 = "wm-rh-supramarginal" +- 4032 = "wm-rh-frontalpole" +- 4033 = "wm-rh-temporalpole" +- 4034 = "wm-rh-transversetemporal" +- 4035 = "wm-rh-insula" +- 1100 = "ctx-lh-Unknown" +- 1101 = "ctx-lh-Corpus_callosum" +- 1102 = "ctx-lh-G_and_S_Insula_ONLY_AVERAGE" +- 1103 = "ctx-lh-G_cingulate-Isthmus" +- 1104 = "ctx-lh-G_cingulate-Main_part" +- 1200 = "ctx-lh-G_cingulate-caudal_ACC" +- 1201 = "ctx-lh-G_cingulate-rostral_ACC" +- 1202 = "ctx-lh-G_cingulate-posterior" +- 1205 = "ctx-lh-S_cingulate-caudal_ACC" +- 1206 = "ctx-lh-S_cingulate-rostral_ACC" +- 1207 = "ctx-lh-S_cingulate-posterior" +- 1210 = "ctx-lh-S_pericallosal-caudal" +- 1211 = "ctx-lh-S_pericallosal-rostral" +- 1212 = "ctx-lh-S_pericallosal-posterior" +- 1105 = "ctx-lh-G_cuneus" +- 1106 = "ctx-lh-G_frontal_inf-Opercular_part" +- 1107 = "ctx-lh-G_frontal_inf-Orbital_part" +- 1108 = "ctx-lh-G_frontal_inf-Triangular_part" +- 1109 = "ctx-lh-G_frontal_middle" +- 1110 = "ctx-lh-G_frontal_superior" +- 1111 = "ctx-lh-G_frontomarginal" +- 1112 = "ctx-lh-G_insular_long" +- 1113 = "ctx-lh-G_insular_short" +- 1114 = "ctx-lh-G_and_S_occipital_inferior" +- 1115 = "ctx-lh-G_occipital_middle" +- 1116 = "ctx-lh-G_occipital_superior" +- 1117 = "ctx-lh-G_occipit-temp_lat-Or_fusiform" +- 1118 = "ctx-lh-G_occipit-temp_med-Lingual_part" +- 1119 = "ctx-lh-G_occipit-temp_med-Parahippocampal_part" +- 1120 = "ctx-lh-G_orbital" +- 1121 = "ctx-lh-G_paracentral" +- 1122 = "ctx-lh-G_parietal_inferior-Angular_part" +- 1123 = "ctx-lh-G_parietal_inferior-Supramarginal_part" +- 1124 = "ctx-lh-G_parietal_superior" +- 1125 = "ctx-lh-G_postcentral" +- 1126 = "ctx-lh-G_precentral" +- 1127 = "ctx-lh-G_precuneus" +- 1128 = "ctx-lh-G_rectus" +- 1129 = "ctx-lh-G_subcallosal" +- 1130 = "ctx-lh-G_subcentral" +- 1131 = "ctx-lh-G_temporal_inferior" +- 1132 = "ctx-lh-G_temporal_middle" +- 1133 = "ctx-lh-G_temp_sup-G_temp_transv_and_interm_S" +- 1134 = "ctx-lh-G_temp_sup-Lateral_aspect" +- 1135 = "ctx-lh-G_temp_sup-Planum_polare" +- 1136 = "ctx-lh-G_temp_sup-Planum_tempolare" +- 1137 = "ctx-lh-G_and_S_transverse_frontopolar" +- 1138 = "ctx-lh-Lat_Fissure-ant_sgt-ramus_horizontal" +- 1139 = "ctx-lh-Lat_Fissure-ant_sgt-ramus_vertical" +- 1140 = "ctx-lh-Lat_Fissure-post_sgt" +- 1141 = "ctx-lh-Medial_wall" +- 1142 = "ctx-lh-Pole_occipital" +- 1143 = "ctx-lh-Pole_temporal" +- 1144 = "ctx-lh-S_calcarine" +- 1145 = "ctx-lh-S_central" +- 1146 = "ctx-lh-S_central_insula" +- 1147 = "ctx-lh-S_cingulate-Main_part_and_Intracingulate" +- 1148 = "ctx-lh-S_cingulate-Marginalis_part" +- 1149 = "ctx-lh-S_circular_insula_anterior" +- 1150 = "ctx-lh-S_circular_insula_inferior" +- 1151 = "ctx-lh-S_circular_insula_superior" +- 1152 = "ctx-lh-S_collateral_transverse_ant" +- 1153 = "ctx-lh-S_collateral_transverse_post" +- 1154 = "ctx-lh-S_frontal_inferior" +- 1155 = "ctx-lh-S_frontal_middle" +- 1156 = "ctx-lh-S_frontal_superior" +- 1157 = "ctx-lh-S_frontomarginal" +- 1158 = "ctx-lh-S_intermedius_primus-Jensen" +- 1159 = "ctx-lh-S_intraparietal-and_Parietal_transverse" +- 1160 = "ctx-lh-S_occipital_anterior" +- 1161 = "ctx-lh-S_occipital_middle_and_Lunatus" +- 1162 = "ctx-lh-S_occipital_superior_and_transversalis" +- 1163 = "ctx-lh-S_occipito-temporal_lateral" +- 1164 = "ctx-lh-S_occipito-temporal_medial_and_S_Lingual" +- 1165 = "ctx-lh-S_orbital-H_shapped" +- 1166 = "ctx-lh-S_orbital_lateral" +- 1167 = "ctx-lh-S_orbital_medial-Or_olfactory" +- 1168 = "ctx-lh-S_paracentral" +- 1169 = "ctx-lh-S_parieto_occipital" +- 1170 = "ctx-lh-S_pericallosal" +- 1171 = "ctx-lh-S_postcentral" +- 1172 = "ctx-lh-S_precentral-Inferior-part" +- 1173 = "ctx-lh-S_precentral-Superior-part" +- 1174 = "ctx-lh-S_subcentral_ant" +- 1175 = "ctx-lh-S_subcentral_post" +- 1176 = "ctx-lh-S_suborbital" +- 1177 = "ctx-lh-S_subparietal" +- 1178 = "ctx-lh-S_supracingulate" +- 1179 = "ctx-lh-S_temporal_inferior" +- 1180 = "ctx-lh-S_temporal_superior" +- 1181 = "ctx-lh-S_temporal_transverse" +- 2100 = "ctx-rh-Unknown" +- 2101 = "ctx-rh-Corpus_callosum" +- 2102 = "ctx-rh-G_and_S_Insula_ONLY_AVERAGE" +- 2103 = "ctx-rh-G_cingulate-Isthmus" +- 2104 = "ctx-rh-G_cingulate-Main_part" +- 2105 = "ctx-rh-G_cuneus" +- 2106 = "ctx-rh-G_frontal_inf-Opercular_part" +- 2107 = "ctx-rh-G_frontal_inf-Orbital_part" +- 2108 = "ctx-rh-G_frontal_inf-Triangular_part" +- 2109 = "ctx-rh-G_frontal_middle" +- 2110 = "ctx-rh-G_frontal_superior" +- 2111 = "ctx-rh-G_frontomarginal" +- 2112 = "ctx-rh-G_insular_long" +- 2113 = "ctx-rh-G_insular_short" +- 2114 = "ctx-rh-G_and_S_occipital_inferior" +- 2115 = "ctx-rh-G_occipital_middle" +- 2116 = "ctx-rh-G_occipital_superior" +- 2117 = "ctx-rh-G_occipit-temp_lat-Or_fusiform" +- 2118 = "ctx-rh-G_occipit-temp_med-Lingual_part" +- 2119 = "ctx-rh-G_occipit-temp_med-Parahippocampal_part" +- 2120 = "ctx-rh-G_orbital" +- 2121 = "ctx-rh-G_paracentral" +- 2122 = "ctx-rh-G_parietal_inferior-Angular_part" +- 2123 = "ctx-rh-G_parietal_inferior-Supramarginal_part" +- 2124 = "ctx-rh-G_parietal_superior" +- 2125 = "ctx-rh-G_postcentral" +- 2126 = "ctx-rh-G_precentral" +- 2127 = "ctx-rh-G_precuneus" +- 2128 = "ctx-rh-G_rectus" +- 2129 = "ctx-rh-G_subcallosal" +- 2130 = "ctx-rh-G_subcentral" +- 2131 = "ctx-rh-G_temporal_inferior" +- 2132 = "ctx-rh-G_temporal_middle" +- 2133 = "ctx-rh-G_temp_sup-G_temp_transv_and_interm_S" +- 2134 = "ctx-rh-G_temp_sup-Lateral_aspect" +- 2135 = "ctx-rh-G_temp_sup-Planum_polare" +- 2136 = "ctx-rh-G_temp_sup-Planum_tempolare" +- 2137 = "ctx-rh-G_and_S_transverse_frontopolar" +- 2138 = "ctx-rh-Lat_Fissure-ant_sgt-ramus_horizontal" +- 2139 = "ctx-rh-Lat_Fissure-ant_sgt-ramus_vertical" +- 2140 = "ctx-rh-Lat_Fissure-post_sgt" +- 2141 = "ctx-rh-Medial_wall" +- 2142 = "ctx-rh-Pole_occipital" +- 2143 = "ctx-rh-Pole_temporal" +- 2144 = "ctx-rh-S_calcarine" +- 2145 = "ctx-rh-S_central" +- 2146 = "ctx-rh-S_central_insula" +- 2147 = "ctx-rh-S_cingulate-Main_part_and_Intracingulate" +- 2148 = "ctx-rh-S_cingulate-Marginalis_part" +- 2149 = "ctx-rh-S_circular_insula_anterior" +- 2150 = "ctx-rh-S_circular_insula_inferior" +- 2151 = "ctx-rh-S_circular_insula_superior" +- 2152 = "ctx-rh-S_collateral_transverse_ant" +- 2153 = "ctx-rh-S_collateral_transverse_post" +- 2154 = "ctx-rh-S_frontal_inferior" +- 2155 = "ctx-rh-S_frontal_middle" +- 2156 = "ctx-rh-S_frontal_superior" +- 2157 = "ctx-rh-S_frontomarginal" +- 2158 = "ctx-rh-S_intermedius_primus-Jensen" +- 2159 = "ctx-rh-S_intraparietal-and_Parietal_transverse" +- 2160 = "ctx-rh-S_occipital_anterior" +- 2161 = "ctx-rh-S_occipital_middle_and_Lunatus" +- 2162 = "ctx-rh-S_occipital_superior_and_transversalis" +- 2163 = "ctx-rh-S_occipito-temporal_lateral" +- 2164 = "ctx-rh-S_occipito-temporal_medial_and_S_Lingual" +- 2165 = "ctx-rh-S_orbital-H_shapped" +- 2166 = "ctx-rh-S_orbital_lateral" +- 2167 = "ctx-rh-S_orbital_medial-Or_olfactory" +- 2168 = "ctx-rh-S_paracentral" +- 2169 = "ctx-rh-S_parieto_occipital" +- 2170 = "ctx-rh-S_pericallosal" +- 2171 = "ctx-rh-S_postcentral" +- 2172 = "ctx-rh-S_precentral-Inferior-part" +- 2173 = "ctx-rh-S_precentral-Superior-part" +- 2174 = "ctx-rh-S_subcentral_ant" +- 2175 = "ctx-rh-S_subcentral_post" +- 2176 = "ctx-rh-S_suborbital" +- 2177 = "ctx-rh-S_subparietal" +- 2178 = "ctx-rh-S_supracingulate" +- 2179 = "ctx-rh-S_temporal_inferior" +- 2180 = "ctx-rh-S_temporal_superior" +- 2181 = "ctx-rh-S_temporal_transverse" +- 2200 = "ctx-rh-G_cingulate-caudal_ACC" +- 2201 = "ctx-rh-G_cingulate-rostral_ACC" +- 2202 = "ctx-rh-G_cingulate-posterior" +- 2205 = "ctx-rh-S_cingulate-caudal_ACC" +- 2206 = "ctx-rh-S_cingulate-rostral_ACC" +- 2207 = "ctx-rh-S_cingulate-posterior" +- 2210 = "ctx-rh-S_pericallosal-caudal" +- 2211 = "ctx-rh-S_pericallosal-rostral" +- 2212 = "ctx-rh-S_pericallosal-posterior" +- 3100 = "wm-lh-Unknown" +- 3101 = "wm-lh-Corpus_callosum" +- 3102 = "wm-lh-G_and_S_Insula_ONLY_AVERAGE" +- 3103 = "wm-lh-G_cingulate-Isthmus" +- 3104 = "wm-lh-G_cingulate-Main_part" +- 3105 = "wm-lh-G_cuneus" +- 3106 = "wm-lh-G_frontal_inf-Opercular_part" +- 3107 = "wm-lh-G_frontal_inf-Orbital_part" +- 3108 = "wm-lh-G_frontal_inf-Triangular_part" +- 3109 = "wm-lh-G_frontal_middle" +- 3110 = "wm-lh-G_frontal_superior" +- 3111 = "wm-lh-G_frontomarginal" +- 3112 = "wm-lh-G_insular_long" +- 3113 = "wm-lh-G_insular_short" +- 3114 = "wm-lh-G_and_S_occipital_inferior" +- 3115 = "wm-lh-G_occipital_middle" +- 3116 = "wm-lh-G_occipital_superior" +- 3117 = "wm-lh-G_occipit-temp_lat-Or_fusiform" +- 3118 = "wm-lh-G_occipit-temp_med-Lingual_part" +- 3119 = "wm-lh-G_occipit-temp_med-Parahippocampal_part" +- 3120 = "wm-lh-G_orbital" +- 3121 = "wm-lh-G_paracentral" +- 3122 = "wm-lh-G_parietal_inferior-Angular_part" +- 3123 = "wm-lh-G_parietal_inferior-Supramarginal_part" +- 3124 = "wm-lh-G_parietal_superior" +- 3125 = "wm-lh-G_postcentral" +- 3126 = "wm-lh-G_precentral" +- 3127 = "wm-lh-G_precuneus" +- 3128 = "wm-lh-G_rectus" +- 3129 = "wm-lh-G_subcallosal" +- 3130 = "wm-lh-G_subcentral" +- 3131 = "wm-lh-G_temporal_inferior" +- 3132 = "wm-lh-G_temporal_middle" +- 3133 = "wm-lh-G_temp_sup-G_temp_transv_and_interm_S" +- 3134 = "wm-lh-G_temp_sup-Lateral_aspect" +- 3135 = "wm-lh-G_temp_sup-Planum_polare" +- 3136 = "wm-lh-G_temp_sup-Planum_tempolare" +- 3137 = "wm-lh-G_and_S_transverse_frontopolar" +- 3138 = "wm-lh-Lat_Fissure-ant_sgt-ramus_horizontal" +- 3139 = "wm-lh-Lat_Fissure-ant_sgt-ramus_vertical" +- 3140 = "wm-lh-Lat_Fissure-post_sgt" +- 3141 = "wm-lh-Medial_wall" +- 3142 = "wm-lh-Pole_occipital" +- 3143 = "wm-lh-Pole_temporal" +- 3144 = "wm-lh-S_calcarine" +- 3145 = "wm-lh-S_central" +- 3146 = "wm-lh-S_central_insula" +- 3147 = "wm-lh-S_cingulate-Main_part_and_Intracingulate" +- 3148 = "wm-lh-S_cingulate-Marginalis_part" +- 3149 = "wm-lh-S_circular_insula_anterior" +- 3150 = "wm-lh-S_circular_insula_inferior" +- 3151 = "wm-lh-S_circular_insula_superior" +- 3152 = "wm-lh-S_collateral_transverse_ant" +- 3153 = "wm-lh-S_collateral_transverse_post" +- 3154 = "wm-lh-S_frontal_inferior" +- 3155 = "wm-lh-S_frontal_middle" +- 3156 = "wm-lh-S_frontal_superior" +- 3157 = "wm-lh-S_frontomarginal" +- 3158 = "wm-lh-S_intermedius_primus-Jensen" +- 3159 = "wm-lh-S_intraparietal-and_Parietal_transverse" +- 3160 = "wm-lh-S_occipital_anterior" +- 3161 = "wm-lh-S_occipital_middle_and_Lunatus" +- 3162 = "wm-lh-S_occipital_superior_and_transversalis" +- 3163 = "wm-lh-S_occipito-temporal_lateral" +- 3164 = "wm-lh-S_occipito-temporal_medial_and_S_Lingual" +- 3165 = "wm-lh-S_orbital-H_shapped" +- 3166 = "wm-lh-S_orbital_lateral" +- 3167 = "wm-lh-S_orbital_medial-Or_olfactory" +- 3168 = "wm-lh-S_paracentral" +- 3169 = "wm-lh-S_parieto_occipital" +- 3170 = "wm-lh-S_pericallosal" +- 3171 = "wm-lh-S_postcentral" +- 3172 = "wm-lh-S_precentral-Inferior-part" +- 3173 = "wm-lh-S_precentral-Superior-part" +- 3174 = "wm-lh-S_subcentral_ant" +- 3175 = "wm-lh-S_subcentral_post" +- 3176 = "wm-lh-S_suborbital" +- 3177 = "wm-lh-S_subparietal" +- 3178 = "wm-lh-S_supracingulate" +- 3179 = "wm-lh-S_temporal_inferior" +- 3180 = "wm-lh-S_temporal_superior" +- 3181 = "wm-lh-S_temporal_transverse" +- 4100 = "wm-rh-Unknown" +- 4101 = "wm-rh-Corpus_callosum" +- 4102 = "wm-rh-G_and_S_Insula_ONLY_AVERAGE" +- 4103 = "wm-rh-G_cingulate-Isthmus" +- 4104 = "wm-rh-G_cingulate-Main_part" +- 4105 = "wm-rh-G_cuneus" +- 4106 = "wm-rh-G_frontal_inf-Opercular_part" +- 4107 = "wm-rh-G_frontal_inf-Orbital_part" +- 4108 = "wm-rh-G_frontal_inf-Triangular_part" +- 4109 = "wm-rh-G_frontal_middle" +- 4110 = "wm-rh-G_frontal_superior" +- 4111 = "wm-rh-G_frontomarginal" +- 4112 = "wm-rh-G_insular_long" +- 4113 = "wm-rh-G_insular_short" +- 4114 = "wm-rh-G_and_S_occipital_inferior" +- 4115 = "wm-rh-G_occipital_middle" +- 4116 = "wm-rh-G_occipital_superior" +- 4117 = "wm-rh-G_occipit-temp_lat-Or_fusiform" +- 4118 = "wm-rh-G_occipit-temp_med-Lingual_part" +- 4119 = "wm-rh-G_occipit-temp_med-Parahippocampal_part" +- 4120 = "wm-rh-G_orbital" +- 4121 = "wm-rh-G_paracentral" +- 4122 = "wm-rh-G_parietal_inferior-Angular_part" +- 4123 = "wm-rh-G_parietal_inferior-Supramarginal_part" +- 4124 = "wm-rh-G_parietal_superior" +- 4125 = "wm-rh-G_postcentral" +- 4126 = "wm-rh-G_precentral" +- 4127 = "wm-rh-G_precuneus" +- 4128 = "wm-rh-G_rectus" +- 4129 = "wm-rh-G_subcallosal" +- 4130 = "wm-rh-G_subcentral" +- 4131 = "wm-rh-G_temporal_inferior" +- 4132 = "wm-rh-G_temporal_middle" +- 4133 = "wm-rh-G_temp_sup-G_temp_transv_and_interm_S" +- 4134 = "wm-rh-G_temp_sup-Lateral_aspect" +- 4135 = "wm-rh-G_temp_sup-Planum_polare" +- 4136 = "wm-rh-G_temp_sup-Planum_tempolare" +- 4137 = "wm-rh-G_and_S_transverse_frontopolar" +- 4138 = "wm-rh-Lat_Fissure-ant_sgt-ramus_horizontal" +- 4139 = "wm-rh-Lat_Fissure-ant_sgt-ramus_vertical" +- 4140 = "wm-rh-Lat_Fissure-post_sgt" +- 4141 = "wm-rh-Medial_wall" +- 4142 = "wm-rh-Pole_occipital" +- 4143 = "wm-rh-Pole_temporal" +- 4144 = "wm-rh-S_calcarine" +- 4145 = "wm-rh-S_central" +- 4146 = "wm-rh-S_central_insula" +- 4147 = "wm-rh-S_cingulate-Main_part_and_Intracingulate" +- 4148 = "wm-rh-S_cingulate-Marginalis_part" +- 4149 = "wm-rh-S_circular_insula_anterior" +- 4150 = "wm-rh-S_circular_insula_inferior" +- 4151 = "wm-rh-S_circular_insula_superior" +- 4152 = "wm-rh-S_collateral_transverse_ant" +- 4153 = "wm-rh-S_collateral_transverse_post" +- 4154 = "wm-rh-S_frontal_inferior" +- 4155 = "wm-rh-S_frontal_middle" +- 4156 = "wm-rh-S_frontal_superior" +- 4157 = "wm-rh-S_frontomarginal" +- 4158 = "wm-rh-S_intermedius_primus-Jensen" +- 4159 = "wm-rh-S_intraparietal-and_Parietal_transverse" +- 4160 = "wm-rh-S_occipital_anterior" +- 4161 = "wm-rh-S_occipital_middle_and_Lunatus" +- 4162 = "wm-rh-S_occipital_superior_and_transversalis" +- 4163 = "wm-rh-S_occipito-temporal_lateral" +- 4164 = "wm-rh-S_occipito-temporal_medial_and_S_Lingual" +- 4165 = "wm-rh-S_orbital-H_shapped" +- 4166 = "wm-rh-S_orbital_lateral" +- 4167 = "wm-rh-S_orbital_medial-Or_olfactory" +- 4168 = "wm-rh-S_paracentral" +- 4169 = "wm-rh-S_parieto_occipital" +- 4170 = "wm-rh-S_pericallosal" +- 4171 = "wm-rh-S_postcentral" +- 4172 = "wm-rh-S_precentral-Inferior-part" +- 4173 = "wm-rh-S_precentral-Superior-part" +- 4174 = "wm-rh-S_subcentral_ant" +- 4175 = "wm-rh-S_subcentral_post" +- 4176 = "wm-rh-S_suborbital" +- 4177 = "wm-rh-S_subparietal" +- 4178 = "wm-rh-S_supracingulate" +- 4179 = "wm-rh-S_temporal_inferior" +- 4180 = "wm-rh-S_temporal_superior" +- 4181 = "wm-rh-S_temporal_transverse" +- 5001 = "Left-UnsegmentedWhiteMatter" +- 5002 = "Right-UnsegmentedWhiteMatter" +- 5100 = "fmajor" +- 5101 = "fminor" +- 5102 = "lh.atr" +- 5103 = "lh.cab" +- 5104 = "lh.ccg" +- 5105 = "lh.cst" +- 5106 = "lh.ilf" +- 5107 = "lh.slfp" +- 5108 = "lh.slft" +- 5109 = "lh.unc" +- 5110 = "rh.atr" +- 5111 = "rh.cab" +- 5112 = "rh.ccg" +- 5113 = "rh.cst" +- 5114 = "rh.ilf" +- 5115 = "rh.slfp" +- 5116 = "rh.slft" +- 5117 = "rh.unc" +- 5200 = "CC-ForcepsMajor" +- 5201 = "CC-ForcepsMinor" +- 5202 = "LAntThalRadiation" +- 5203 = "LCingulumAngBundle" +- 5204 = "LCingulumCingGyrus" +- 5205 = "LCorticospinalTract" +- 5206 = "LInfLongFas" +- 5207 = "LSupLongFasParietal" +- 5208 = "LSupLongFasTemporal" +- 5209 = "LUncinateFas" +- 5210 = "RAntThalRadiation" +- 5211 = "RCingulumAngBundle" +- 5212 = "RCingulumCingGyrus" +- 5213 = "RCorticospinalTract" +- 5214 = "RInfLongFas" +- 5215 = "RSupLongFasParietal" +- 5216 = "RSupLongFasTemporal" +- 5217 = "RUncinateFas" +- 6000 = "CST-orig" +- 6001 = "CST-hammer" +- 6002 = "CST-CVS" +- 6003 = "CST-flirt" +- 6010 = "Left-SLF1" +- 6020 = "Right-SLF1" +- 6030 = "Left-SLF3" +- 6040 = "Right-SLF3" +- 6050 = "Left-CST" +- 6060 = "Right-CST" +- 6070 = "Left-SLF2" +- 6080 = "Right-SLF2" +- 7001 = "Lateral-nucleus" +- 7002 = "Basolateral-nucleus" +- 7003 = "Basal-nucleus" +- 7004 = "Centromedial-nucleus" +- 7005 = "Central-nucleus" +- 7006 = "Medial-nucleus" +- 7007 = "Cortical-nucleus" +- 7008 = "Accessory-Basal-nucleus" +- 7009 = "Corticoamygdaloid-transitio" +- 7010 = "Anterior-amygdaloid-area-AAA" +- 7011 = "Fusion-amygdala-HP-FAH" +- 7012 = "Hippocampal-amygdala-transition-HATA" +- 7013 = "Endopiriform-nucleus" +- 7014 = "Lateral-nucleus-olfactory-tract" +- 7015 = "Paralaminar-nucleus" +- 7016 = "Intercalated-nucleus" +- 7017 = "Prepiriform-cortex" +- 7018 = "Periamygdaloid-cortex" +- 7019 = "Envelope-Amygdala" +- 7020 = "Extranuclear-Amydala" +- 7100 = "Brainstem-inferior-colliculus" +- 7101 = "Brainstem-cochlear-nucleus" +- 8001 = "Thalamus-Anterior" +- 8002 = "Thalamus-Ventral-anterior" +- 8003 = "Thalamus-Lateral-dorsal" +- 8004 = "Thalamus-Lateral-posterior" +- 8005 = "Thalamus-Ventral-lateral" +- 8006 = "Thalamus-Ventral-posterior-medial" +- 8007 = "Thalamus-Ventral-posterior-lateral" +- 8008 = "Thalamus-intralaminar" +- 8009 = "Thalamus-centromedian" +- 8010 = "Thalamus-mediodorsal" +- 8011 = "Thalamus-medial" +- 8012 = "Thalamus-pulvinar" +- 8013 = "Thalamus-lateral-geniculate" +- 8014 = "Thalamus-medial-geniculate" +- 9000 = "ctx-lh-prefrontal" +- 9001 = "ctx-lh-primary-motor" +- 9002 = "ctx-lh-premotor" +- 9003 = "ctx-lh-temporal" +- 9004 = "ctx-lh-posterior-parietal" +- 9005 = "ctx-lh-prim-sec-somatosensory" +- 9006 = "ctx-lh-occipital" +- 9500 = "ctx-rh-prefrontal" +- 9501 = "ctx-rh-primary-motor" +- 9502 = "ctx-rh-premotor" +- 9503 = "ctx-rh-temporal" +- 9504 = "ctx-rh-posterior-parietal" +- 9505 = "ctx-rh-prim-sec-somatosensory" +- 9506 = "ctx-rh-occipital" +- 11100 = "ctx_lh_Unknown" +- 11101 = "ctx_lh_G_and_S_frontomargin" +- 11102 = "ctx_lh_G_and_S_occipital_inf" +- 11103 = "ctx_lh_G_and_S_paracentral" +- 11104 = "ctx_lh_G_and_S_subcentral" +- 11105 = "ctx_lh_G_and_S_transv_frontopol" +- 11106 = "ctx_lh_G_and_S_cingul-Ant" +- 11107 = "ctx_lh_G_and_S_cingul-Mid-Ant" +- 11108 = "ctx_lh_G_and_S_cingul-Mid-Post" +- 11109 = "ctx_lh_G_cingul-Post-dorsal" +- 11110 = "ctx_lh_G_cingul-Post-ventral" +- 11111 = "ctx_lh_G_cuneus" +- 11112 = "ctx_lh_G_front_inf-Opercular" +- 11113 = "ctx_lh_G_front_inf-Orbital" +- 11114 = "ctx_lh_G_front_inf-Triangul" +- 11115 = "ctx_lh_G_front_middle" +- 11116 = "ctx_lh_G_front_sup" +- 11117 = "ctx_lh_G_Ins_lg_and_S_cent_ins" +- 11118 = "ctx_lh_G_insular_short" +- 11119 = "ctx_lh_G_occipital_middle" +- 11120 = "ctx_lh_G_occipital_sup" +- 11121 = "ctx_lh_G_oc-temp_lat-fusifor" +- 11122 = "ctx_lh_G_oc-temp_med-Lingual" +- 11123 = "ctx_lh_G_oc-temp_med-Parahip" +- 11124 = "ctx_lh_G_orbital" +- 11125 = "ctx_lh_G_pariet_inf-Angular" +- 11126 = "ctx_lh_G_pariet_inf-Supramar" +- 11127 = "ctx_lh_G_parietal_sup" +- 11128 = "ctx_lh_G_postcentral" +- 11129 = "ctx_lh_G_precentral" +- 11130 = "ctx_lh_G_precuneus" +- 11131 = "ctx_lh_G_rectus" +- 11132 = "ctx_lh_G_subcallosal" +- 11133 = "ctx_lh_G_temp_sup-G_T_transv" +- 11134 = "ctx_lh_G_temp_sup-Lateral" +- 11135 = "ctx_lh_G_temp_sup-Plan_polar" +- 11136 = "ctx_lh_G_temp_sup-Plan_tempo" +- 11137 = "ctx_lh_G_temporal_inf" +- 11138 = "ctx_lh_G_temporal_middle" +- 11139 = "ctx_lh_Lat_Fis-ant-Horizont" +- 11140 = "ctx_lh_Lat_Fis-ant-Vertical" +- 11141 = "ctx_lh_Lat_Fis-post" +- 11142 = "ctx_lh_Medial_wall" +- 11143 = "ctx_lh_Pole_occipital" +- 11144 = "ctx_lh_Pole_temporal" +- 11145 = "ctx_lh_S_calcarine" +- 11146 = "ctx_lh_S_central" +- 11147 = "ctx_lh_S_cingul-Marginalis" +- 11148 = "ctx_lh_S_circular_insula_ant" +- 11149 = "ctx_lh_S_circular_insula_inf" +- 11150 = "ctx_lh_S_circular_insula_sup" +- 11151 = "ctx_lh_S_collat_transv_ant" +- 11152 = "ctx_lh_S_collat_transv_post" +- 11153 = "ctx_lh_S_front_inf" +- 11154 = "ctx_lh_S_front_middle" +- 11155 = "ctx_lh_S_front_sup" +- 11156 = "ctx_lh_S_interm_prim-Jensen" +- 11157 = "ctx_lh_S_intrapariet_and_P_trans" +- 11158 = "ctx_lh_S_oc_middle_and_Lunatus" +- 11159 = "ctx_lh_S_oc_sup_and_transversal" +- 11160 = "ctx_lh_S_occipital_ant" +- 11161 = "ctx_lh_S_oc-temp_lat" +- 11162 = "ctx_lh_S_oc-temp_med_and_Lingual" +- 11163 = "ctx_lh_S_orbital_lateral" +- 11164 = "ctx_lh_S_orbital_med-olfact" +- 11165 = "ctx_lh_S_orbital-H_Shaped" +- 11166 = "ctx_lh_S_parieto_occipital" +- 11167 = "ctx_lh_S_pericallosal" +- 11168 = "ctx_lh_S_postcentral" +- 11169 = "ctx_lh_S_precentral-inf-part" +- 11170 = "ctx_lh_S_precentral-sup-part" +- 11171 = "ctx_lh_S_suborbital" +- 11172 = "ctx_lh_S_subparietal" +- 11173 = "ctx_lh_S_temporal_inf" +- 11174 = "ctx_lh_S_temporal_sup" +- 11175 = "ctx_lh_S_temporal_transverse" +- 12100 = "ctx_rh_Unknown" +- 12101 = "ctx_rh_G_and_S_frontomargin" +- 12102 = "ctx_rh_G_and_S_occipital_inf" +- 12103 = "ctx_rh_G_and_S_paracentral" +- 12104 = "ctx_rh_G_and_S_subcentral" +- 12105 = "ctx_rh_G_and_S_transv_frontopol" +- 12106 = "ctx_rh_G_and_S_cingul-Ant" +- 12107 = "ctx_rh_G_and_S_cingul-Mid-Ant" +- 12108 = "ctx_rh_G_and_S_cingul-Mid-Post" +- 12109 = "ctx_rh_G_cingul-Post-dorsal" +- 12110 = "ctx_rh_G_cingul-Post-ventral" +- 12111 = "ctx_rh_G_cuneus" +- 12112 = "ctx_rh_G_front_inf-Opercular" +- 12113 = "ctx_rh_G_front_inf-Orbital" +- 12114 = "ctx_rh_G_front_inf-Triangul" +- 12115 = "ctx_rh_G_front_middle" +- 12116 = "ctx_rh_G_front_sup" +- 12117 = "ctx_rh_G_Ins_lg_and_S_cent_ins" +- 12118 = "ctx_rh_G_insular_short" +- 12119 = "ctx_rh_G_occipital_middle" +- 12120 = "ctx_rh_G_occipital_sup" +- 12121 = "ctx_rh_G_oc-temp_lat-fusifor" +- 12122 = "ctx_rh_G_oc-temp_med-Lingual" +- 12123 = "ctx_rh_G_oc-temp_med-Parahip" +- 12124 = "ctx_rh_G_orbital" +- 12125 = "ctx_rh_G_pariet_inf-Angular" +- 12126 = "ctx_rh_G_pariet_inf-Supramar" +- 12127 = "ctx_rh_G_parietal_sup" +- 12128 = "ctx_rh_G_postcentral" +- 12129 = "ctx_rh_G_precentral" +- 12130 = "ctx_rh_G_precuneus" +- 12131 = "ctx_rh_G_rectus" +- 12132 = "ctx_rh_G_subcallosal" +- 12133 = "ctx_rh_G_temp_sup-G_T_transv" +- 12134 = "ctx_rh_G_temp_sup-Lateral" +- 12135 = "ctx_rh_G_temp_sup-Plan_polar" +- 12136 = "ctx_rh_G_temp_sup-Plan_tempo" +- 12137 = "ctx_rh_G_temporal_inf" +- 12138 = "ctx_rh_G_temporal_middle" +- 12139 = "ctx_rh_Lat_Fis-ant-Horizont" +- 12140 = "ctx_rh_Lat_Fis-ant-Vertical" +- 12141 = "ctx_rh_Lat_Fis-post" +- 12142 = "ctx_rh_Medial_wall" +- 12143 = "ctx_rh_Pole_occipital" +- 12144 = "ctx_rh_Pole_temporal" +- 12145 = "ctx_rh_S_calcarine" +- 12146 = "ctx_rh_S_central" +- 12147 = "ctx_rh_S_cingul-Marginalis" +- 12148 = "ctx_rh_S_circular_insula_ant" +- 12149 = "ctx_rh_S_circular_insula_inf" +- 12150 = "ctx_rh_S_circular_insula_sup" +- 12151 = "ctx_rh_S_collat_transv_ant" +- 12152 = "ctx_rh_S_collat_transv_post" +- 12153 = "ctx_rh_S_front_inf" +- 12154 = "ctx_rh_S_front_middle" +- 12155 = "ctx_rh_S_front_sup" +- 12156 = "ctx_rh_S_interm_prim-Jensen" +- 12157 = "ctx_rh_S_intrapariet_and_P_trans" +- 12158 = "ctx_rh_S_oc_middle_and_Lunatus" +- 12159 = "ctx_rh_S_oc_sup_and_transversal" +- 12160 = "ctx_rh_S_occipital_ant" +- 12161 = "ctx_rh_S_oc-temp_lat" +- 12162 = "ctx_rh_S_oc-temp_med_and_Lingual" +- 12163 = "ctx_rh_S_orbital_lateral" +- 12164 = "ctx_rh_S_orbital_med-olfact" +- 12165 = "ctx_rh_S_orbital-H_Shaped" +- 12166 = "ctx_rh_S_parieto_occipital" +- 12167 = "ctx_rh_S_pericallosal" +- 12168 = "ctx_rh_S_postcentral" +- 12169 = "ctx_rh_S_precentral-inf-part" +- 12170 = "ctx_rh_S_precentral-sup-part" +- 12171 = "ctx_rh_S_suborbital" +- 12172 = "ctx_rh_S_subparietal" +- 12173 = "ctx_rh_S_temporal_inf" +- 12174 = "ctx_rh_S_temporal_sup" +- 12175 = "ctx_rh_S_temporal_transverse" +- 13100 = "wm_lh_Unknown" +- 13101 = "wm_lh_G_and_S_frontomargin" +- 13102 = "wm_lh_G_and_S_occipital_inf" +- 13103 = "wm_lh_G_and_S_paracentral" +- 13104 = "wm_lh_G_and_S_subcentral" +- 13105 = "wm_lh_G_and_S_transv_frontopol" +- 13106 = "wm_lh_G_and_S_cingul-Ant" +- 13107 = "wm_lh_G_and_S_cingul-Mid-Ant" +- 13108 = "wm_lh_G_and_S_cingul-Mid-Post" +- 13109 = "wm_lh_G_cingul-Post-dorsal" +- 13110 = "wm_lh_G_cingul-Post-ventral" +- 13111 = "wm_lh_G_cuneus" +- 13112 = "wm_lh_G_front_inf-Opercular" +- 13113 = "wm_lh_G_front_inf-Orbital" +- 13114 = "wm_lh_G_front_inf-Triangul" +- 13115 = "wm_lh_G_front_middle" +- 13116 = "wm_lh_G_front_sup" +- 13117 = "wm_lh_G_Ins_lg_and_S_cent_ins" +- 13118 = "wm_lh_G_insular_short" +- 13119 = "wm_lh_G_occipital_middle" +- 13120 = "wm_lh_G_occipital_sup" +- 13121 = "wm_lh_G_oc-temp_lat-fusifor" +- 13122 = "wm_lh_G_oc-temp_med-Lingual" +- 13123 = "wm_lh_G_oc-temp_med-Parahip" +- 13124 = "wm_lh_G_orbital" +- 13125 = "wm_lh_G_pariet_inf-Angular" +- 13126 = "wm_lh_G_pariet_inf-Supramar" +- 13127 = "wm_lh_G_parietal_sup" +- 13128 = "wm_lh_G_postcentral" +- 13129 = "wm_lh_G_precentral" +- 13130 = "wm_lh_G_precuneus" +- 13131 = "wm_lh_G_rectus" +- 13132 = "wm_lh_G_subcallosal" +- 13133 = "wm_lh_G_temp_sup-G_T_transv" +- 13134 = "wm_lh_G_temp_sup-Lateral" +- 13135 = "wm_lh_G_temp_sup-Plan_polar" +- 13136 = "wm_lh_G_temp_sup-Plan_tempo" +- 13137 = "wm_lh_G_temporal_inf" +- 13138 = "wm_lh_G_temporal_middle" +- 13139 = "wm_lh_Lat_Fis-ant-Horizont" +- 13140 = "wm_lh_Lat_Fis-ant-Vertical" +- 13141 = "wm_lh_Lat_Fis-post" +- 13142 = "wm_lh_Medial_wall" +- 13143 = "wm_lh_Pole_occipital" +- 13144 = "wm_lh_Pole_temporal" +- 13145 = "wm_lh_S_calcarine" +- 13146 = "wm_lh_S_central" +- 13147 = "wm_lh_S_cingul-Marginalis" +- 13148 = "wm_lh_S_circular_insula_ant" +- 13149 = "wm_lh_S_circular_insula_inf" +- 13150 = "wm_lh_S_circular_insula_sup" +- 13151 = "wm_lh_S_collat_transv_ant" +- 13152 = "wm_lh_S_collat_transv_post" +- 13153 = "wm_lh_S_front_inf" +- 13154 = "wm_lh_S_front_middle" +- 13155 = "wm_lh_S_front_sup" +- 13156 = "wm_lh_S_interm_prim-Jensen" +- 13157 = "wm_lh_S_intrapariet_and_P_trans" +- 13158 = "wm_lh_S_oc_middle_and_Lunatus" +- 13159 = "wm_lh_S_oc_sup_and_transversal" +- 13160 = "wm_lh_S_occipital_ant" +- 13161 = "wm_lh_S_oc-temp_lat" +- 13162 = "wm_lh_S_oc-temp_med_and_Lingual" +- 13163 = "wm_lh_S_orbital_lateral" +- 13164 = "wm_lh_S_orbital_med-olfact" +- 13165 = "wm_lh_S_orbital-H_Shaped" +- 13166 = "wm_lh_S_parieto_occipital" +- 13167 = "wm_lh_S_pericallosal" +- 13168 = "wm_lh_S_postcentral" +- 13169 = "wm_lh_S_precentral-inf-part" +- 13170 = "wm_lh_S_precentral-sup-part" +- 13171 = "wm_lh_S_suborbital" +- 13172 = "wm_lh_S_subparietal" +- 13173 = "wm_lh_S_temporal_inf" +- 13174 = "wm_lh_S_temporal_sup" +- 13175 = "wm_lh_S_temporal_transverse" +- 14100 = "wm_rh_Unknown" +- 14101 = "wm_rh_G_and_S_frontomargin" +- 14102 = "wm_rh_G_and_S_occipital_inf" +- 14103 = "wm_rh_G_and_S_paracentral" +- 14104 = "wm_rh_G_and_S_subcentral" +- 14105 = "wm_rh_G_and_S_transv_frontopol" +- 14106 = "wm_rh_G_and_S_cingul-Ant" +- 14107 = "wm_rh_G_and_S_cingul-Mid-Ant" +- 14108 = "wm_rh_G_and_S_cingul-Mid-Post" +- 14109 = "wm_rh_G_cingul-Post-dorsal" +- 14110 = "wm_rh_G_cingul-Post-ventral" +- 14111 = "wm_rh_G_cuneus" +- 14112 = "wm_rh_G_front_inf-Opercular" +- 14113 = "wm_rh_G_front_inf-Orbital" +- 14114 = "wm_rh_G_front_inf-Triangul" +- 14115 = "wm_rh_G_front_middle" +- 14116 = "wm_rh_G_front_sup" +- 14117 = "wm_rh_G_Ins_lg_and_S_cent_ins" +- 14118 = "wm_rh_G_insular_short" +- 14119 = "wm_rh_G_occipital_middle" +- 14120 = "wm_rh_G_occipital_sup" +- 14121 = "wm_rh_G_oc-temp_lat-fusifor" +- 14122 = "wm_rh_G_oc-temp_med-Lingual" +- 14123 = "wm_rh_G_oc-temp_med-Parahip" +- 14124 = "wm_rh_G_orbital" +- 14125 = "wm_rh_G_pariet_inf-Angular" +- 14126 = "wm_rh_G_pariet_inf-Supramar" +- 14127 = "wm_rh_G_parietal_sup" +- 14128 = "wm_rh_G_postcentral" +- 14129 = "wm_rh_G_precentral" +- 14130 = "wm_rh_G_precuneus" +- 14131 = "wm_rh_G_rectus" +- 14132 = "wm_rh_G_subcallosal" +- 14133 = "wm_rh_G_temp_sup-G_T_transv" +- 14134 = "wm_rh_G_temp_sup-Lateral" +- 14135 = "wm_rh_G_temp_sup-Plan_polar" +- 14136 = "wm_rh_G_temp_sup-Plan_tempo" +- 14137 = "wm_rh_G_temporal_inf" +- 14138 = "wm_rh_G_temporal_middle" +- 14139 = "wm_rh_Lat_Fis-ant-Horizont" +- 14140 = "wm_rh_Lat_Fis-ant-Vertical" +- 14141 = "wm_rh_Lat_Fis-post" +- 14142 = "wm_rh_Medial_wall" +- 14143 = "wm_rh_Pole_occipital" +- 14144 = "wm_rh_Pole_temporal" +- 14145 = "wm_rh_S_calcarine" +- 14146 = "wm_rh_S_central" +- 14147 = "wm_rh_S_cingul-Marginalis" +- 14148 = "wm_rh_S_circular_insula_ant" +- 14149 = "wm_rh_S_circular_insula_inf" +- 14150 = "wm_rh_S_circular_insula_sup" +- 14151 = "wm_rh_S_collat_transv_ant" +- 14152 = "wm_rh_S_collat_transv_post" +- 14153 = "wm_rh_S_front_inf" +- 14154 = "wm_rh_S_front_middle" +- 14155 = "wm_rh_S_front_sup" +- 14156 = "wm_rh_S_interm_prim-Jensen" +- 14157 = "wm_rh_S_intrapariet_and_P_trans" +- 14158 = "wm_rh_S_oc_middle_and_Lunatus" +- 14159 = "wm_rh_S_oc_sup_and_transversal" +- 14160 = "wm_rh_S_occipital_ant" +- 14161 = "wm_rh_S_oc-temp_lat" +- 14162 = "wm_rh_S_oc-temp_med_and_Lingual" +- 14163 = "wm_rh_S_orbital_lateral" +- 14164 = "wm_rh_S_orbital_med-olfact" +- 14165 = "wm_rh_S_orbital-H_Shaped" +- 14166 = "wm_rh_S_parieto_occipital" +- 14167 = "wm_rh_S_pericallosal" +- 14168 = "wm_rh_S_postcentral" +- 14169 = "wm_rh_S_precentral-inf-part" +- 14170 = "wm_rh_S_precentral-sup-part" +- 14171 = "wm_rh_S_suborbital" +- 14172 = "wm_rh_S_subparietal" +- 14173 = "wm_rh_S_temporal_inf" +- 14174 = "wm_rh_S_temporal_sup" +- 14175 = "wm_rh_S_temporal_transverse" + */ /** \page org_mitk_views_connectomicsnetworkoperations The Connectomics Network Operations View \imageMacro{QmitkConnectomicsNetworkOperationsViewIcon_48.png,"Icon of the Connectomics Network Operations View",2.00} This view can be used modify networks and related data. \imageMacro{operationsview.png,"The user interface",4.61} Select a parcellation and press "Convert to RGBA" to create a RGBA image. By doing this conversion it is much easier to discern the different parcels. Furthermore MITK supports 3D visualization of an RGBA image. Select a network and press "Create Connectivity Matrix Image" to create a 2D image of the connectivity matrix. By default the weight of a connection is used as grey value. Using the "Rescale" option will rescale the weights so highest one is 255. Using the "Binary" option will result in a binary connectivity matrix. */ /** \page org_mitk_views_connectomicsstatistics The Connectomics Statistics View \imageMacro{QmitkConnectomicsStatisticsViewIcon_48.png,"Icon of the Connectomics Statistics View",2.00} This view can be used to show statistical analysis of a network. \imageMacro{statisticsview.png,"The user interface",6.58} To calculate network statistics select a network in the datamanager. At this time the following statistics are calculated for the entire network: Furthermore some statistics are calculated on a per node basis and displayed as histograms: */ /** \page org_mitk_views_randomparcellationview The Random Parcellation View \imageMacro{QmitkRandomParcellationIcon.png,"Icon of the Random Parcellation View",2.00} \tableofcontents \section org_mitk_views_randomparcellationviewSummary Summary This view is used to create a random parcellation of a segmented image. It was designed to parcellate grey matter to acquire random nodes for network analysis. This document describes how to use this view. \section org_mitk_views_randomparcellationviewOverview Overview When parcellating an image you can either do a parcellation and use the generated parcellation. In which case it will have as many parcellation as seed points were specified. Instead you can choose to merge some of the original parcels untill either none below a threshold size remain, or until a specified minimum number of parcels has been reached. A further option is to "Just Merge Small Parcels". This will result in only neighbouring parcels below a threshold size being merged. Using this option may result in final parcels below the given threshold size if they are not adjacent to another parcel below the threshold size. In all there are four possibilities to get a random parcellation \section org_mitk_views_randomparcellationviewUsage Usage First you have to get a segmentation of the target structure. You can use the Segmentation View to create one. Select it in the Data Manager. Now you can choose which of the possible ways of parcellation you would like. See \ref org_mitk_views_randomparcellationviewOverview for these possibilities. Start the parcellation process using the "Select Random Nodes" button. You will get a new image in the Data Manager. Every voxel of a given parcel will have the same value (0 for background). \section org_mitk_views_randomparcellationviewMethods Methods This Plug-In uses a kind of region growing algorithm. Random seed voxels are set on the segmentation and each is an own region at the beginning. Then voxels are added iteratively to each smallest region, first just the 6-connected ones and later the 26-connected ones and isolated voxels. Specific constraints have to be fulfilled before a voxel is added to a region. The algorithm stops when all voxels are contained in the regions. For merging it is checked which regions are neighbors of the smallest parcel and then a suitable one, according to a cost function, is merged to this parcel. When the merging algorithm stops depends on which stop-mechanism is chosen. */ diff --git a/Plugins/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/function.js b/Plugins/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/function.js index c601d7f0a6..02ab64cbcd 100644 --- a/Plugins/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/function.js +++ b/Plugins/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/function.js @@ -1,320 +1,320 @@ // If you want to create a new button you have to add some data (strings) to the following five arrays. // Make sure that you add your data at the same position in each array. // The buttons will be generated in order to the array's index. e.g. data at array's index '0' will generate the first button. // enter the name of your module here var moduleNames = new Array( "Preprocessing", "ODF Reconstruction/Signal Modelling", "Diffusion Indices", "Tractography", "Fiber Processing", "Connectomics", "Fiberfox", - "IVIM", + "IVIM & Kurtosis", "Segmentation", "MITK Downloads & News"); // add the MITK-link to your module var moduleLinks = new Array( "mitk://mitk.perspectives/org.mitk.perspectives.dwipreprocessing?clear=false", "mitk://mitk.perspectives/org.mitk.perspectives.reconstruction1?clear=false", "mitk://mitk.perspectives/org.mitk.perspectives.quantification?clear=false", "mitk://mitk.perspectives/org.mitk.perspectives.tractography2?clear=false", "mitk://mitk.perspectives/org.mitk.perspectives.fiberprocessings?clear=false", "mitk://mitk.perspectives/org.mitk.perspectives.connectomics?clear=false", "mitk://mitk.perspectives/org.mitk.perspectives.syntheticdata?clear=false", "mitk://mitk.perspectives/org.mitk.perspectives.ivim?clear=false", "mitk://mitk.perspectives/org.mitk.perspectives.segmentation?clear=false", "http://www.mitk.org"); // add the filename of your icon for the module. Place the picture in subdirectory "pics". // The picture's width should be 136 pixel; the height 123 pixel. var picFilenames = new Array( "12registration.png", "02preprocessingreconstruction.png", "03quantification.png", "04tractography.png", "05fiberprocessing.png", "06connectomics.png", "10softwarephantoms.png", "07ivim.png", "11segmentation.png", "button_mitk.png"); // if you want to create an animated icon, add the name of your animated gif (placed in subdirectory "pics"). Otherwise enter an empty string "". // The animation's width should be 136 pixel; the height 123 pixel. var aniFilenames = new Array( "12aregistration.png", "02apreprocessingreconstruction.png", "03aquantification.png", "04atractography.png", "05afiberprocessing.png", "06aconnectomics.png", "10asoftwarephantoms.png", "07aivim.png", "11asegmentation.png", "button_mitka.png"); // if your module is not stable, you can mark it as experimental. // just set true for experimental or false for stable. var experimental = new Array( false, false, false, false, false, false, false, false, false, false); //"MITK Diffusion allows partial volume analysis and the evaluation and exploration of Tract Based Spatial Statistic datasets (it does NOT reimplement the TBSS methods available in FSL). The Partial Volume Analysis view provides a very robust method for semi-automatic ROI analysis. It uses EM clustering to probabilistically segment fiber vs. non-fiber vs. partial volume.", // add the description for your module. The description is displayed in a PopUp-window. var moduleDescriptions = new Array( "You can use MITK Diffusion to preprocess diffusion-weighted images using image registration, head-motion correction, denoising and much more.", "MITK provides methods to estimate diffusion tensors or Q-balls using different reconstruction methods.", "MITK allows the calculation of different scalar measures for raw diffusion-weighted images (MD, ADC), tensors (Fractional Anisotropy, Relative Anisotropy, Axial Diffusivity, Radial Diffusivity) or ODFs (Generalized Fractional Anisotropy).", "The tractography components of MITK Diffusion implement several fiber tractography algorithms (global and streamline; tensor, dODF/fODF/FOD, peak based as well as machine learning based using the raw signal). The fiber bundle operations view enables fiber postprocessing in various ways. The fiber quantification view generates a variety of images from given fiber tracts, extracts the principal fiber directions and gives detailed information about the fiberbundle itself.", "The results obtained with any fiber tractography method can be postprocessed using tract dissection, filtering, clustering, coloring or SIFT2-like fitting methods.", "Connectomics aims at building graphs (nodes and edges) from a tractogram and applying graph theory for data analysis.", "The Fiberfox software phantom tool allows you to create synthetic diffusion-weighted MR images easily and with a wide variety of properties and options.", "You can use Intravoxel Incoherent Motion to estimate tissue perfusion on basis of diffusion measurements. Several models and interactive exploration of the data are supported.", "MITK Diffusion provides tools for image segmentation and diffusion unrelated image processing.", "Open the MITK website in an external browser."); var bttns = new Array(); var d = document, da = d.all; // holds id of current mouseover-HTML-element var currentTarget; // get the id of current mouseover-HTML-element d.onmouseover = function(o){ var e = da ? event.srcElement : o.target; currentTarget = e.id; } // build-function called by onload-event in HTML-document function createButtons(){ for (i=0; i < moduleNames.length; i++){ bttns[i] = new Button(moduleNames[i],moduleLinks[i], picFilenames[i], aniFilenames[i],moduleDescriptions[i]); bttns[i].createButton(); } for (i=0; i < moduleNames.length; i++){ if(experimental[i]){ setExperimental(i); } } createClearFloat(); } // Class Button function Button(moduleName, moduleLink, picFilename, aniFilename, moduleDescr){ // Properties this.bttnID = "bttn" + moduleName; this.modName = moduleName; this.modLink = moduleLink; this.picPath = "pics/" + picFilename; this.aniPath = "pics/" + aniFilename; this.modDescr = moduleDescr; // Methods this.createButton = function(){ // get DIV-wrapper for Button and append it to HTML-document bttnWrapper = this.createWrapper(); document.getElementById("bttnField").appendChild(bttnWrapper); // get link-element for picture and append it to DIV-wrapper bttnPicLink = this.createPicLink(); bttnWrapper.appendChild(bttnPicLink); // set HTML attributes for button-element bttn = document.createElement("img"); bttn.src = this.picPath; bttn.id = this.bttnID; bttn.className = "modBttn"; bttn.height = 123; bttn.width = 136; bttn.onmouseover = function(){startAni(this.id);}; bttn.onmouseout = function(){stopAni(this.id);}; // append button to link-element bttnPicLink.appendChild(bttn); // // create text-link and add it to DIV-wrapper // bttnTxtLink = document.createElement("a"); //// bttnTxtLink.href = this.modLink; // bttnTxtLink.className = "txtLink"; // bttnTxtLink.appendChild(document.createTextNode(this.modName)); // bttnTxtLink.onclick = function(){showPopUpWindow();}; // bttnTxtLink.id = "popup" + this.modName; // bttnWrapper.appendChild(bttnTxtLink); // create pop-up link for module description bttnPopUpLink = document.createElement("a"); modName = this.modName; modDescr = this.modDescr; bttnPopUpLink.onclick = function(){showPopUpWindow();}; bttnPopUpLink.className = "popUpLink"; bttnPopUpLink.id = "popup" + this.modName; bttnPopUpLink.appendChild(document.createTextNode(this.modName)); bttnWrapper.appendChild(bttnPopUpLink); return bttn; } this.createWrapper = function(){ bttnWrapper = document.createElement("div"); bttnWrapper.id = "wrapper" + this.modName; bttnWrapper.className = "bttnWrap"; return bttnWrapper; } this.createPicLink = function(){ picLink = document.createElement("a"); picLink.href = this.modLink; picLink.id = "link" + this.modName; return picLink; } } function showPopUpWindow(){ // modules position in array? modulePos = getPos(currentTarget,"popup"); // get reference to anchor-element in HTML-document popUpAnchor = document.getElementById("popupAnchor"); // check if a popUp is open if(popUpAnchor.hasChildNodes()){ // if a popUp is open, remove it! popUpAnchor.removeChild(document.getElementById("popup")); } // create new container for popUp container = document.createElement("div"); container.id = "popup"; container.align = "right"; // append popUp-container to HTML-document popUpAnchor.appendChild(container); // create close-button and append it to popUp-container bttnClose = document.createElement("img"); bttnClose.src = "pics/popup_bttn_close.png"; bttnClose.id = "bttnClose"; bttnClose.onclick = function(){closeInfoWindow();}; container.appendChild(bttnClose); // create container for content-elements contHeadline = document.createElement("div"); contHeadline.id = "contHeadline"; contDescription = document.createElement("div"); contDescription.id = "contDescription"; contModLink = document.createElement("div"); contModLink.id = "contModLink"; // append content-container to popUp-container container.appendChild(contHeadline); container.appendChild(contDescription); container.appendChild(contModLink); // create text-elements with content headline = document.createTextNode(moduleNames[modulePos] + " "); description = document.createTextNode(moduleDescriptions[modulePos]); moduleLink = document.createElement("a"); moduleLink.href = moduleLinks[modulePos] ; moduleLink.className = 'moduleLink'; moduleLinkTxt = document.createTextNode("Click here to open '" + moduleNames[modulePos].toLowerCase() + "'"); moduleLink.appendChild(moduleLinkTxt); // append text-elements to their container contHeadline.appendChild(headline); contDescription.appendChild(description); // contModLink.appendChild(moduleLink); } function getPos(id,prefix){ if(prefix == "popup"){ targetID = id.slice(5); }else{ if(prefix == "bttn"){ targetID = id.slice(4); } } for(i=0; i < moduleNames.length; i++ ){ if(moduleNames[i] == targetID){ return i; } } } function setExperimental(modPos){ linkID = "link" + moduleNames[modPos]; expPic = document.createElement("img"); expPic.src = "pics/experimental.png"; expPic.className = "expPic"; //alert(bttns[modPos].bttnID); expPic.onmouseover = function(){startAni(bttns[modPos].bttnID);changeToHover(bttns[modPos].bttnID);}; expPic.onmouseout = function(){stopAni(bttns[modPos].bttnID);changeToNormal(bttns[modPos].bttnID);}; document.getElementById(linkID).appendChild(expPic); } function changeToHover(targetId){ bttn = document.getElementById(targetId); bttn.className = "modBttnHover"; } function changeToNormal(targetId){ bttn = document.getElementById(targetId); bttn.className = "modBttn"; } // function to close PopUp-window function closeInfoWindow(){ popUpAnchor = document.getElementById("popupAnchor"); popUpAnchor.removeChild(document.getElementById("popup")); } function createClearFloat(){ cf = document.createElement("div"); cf.className = "clearfloat"; document.getElementById("bttnField").appendChild(cf); } startAni = function(targetId){ modulePos = getPos(targetId,"bttn"); if(aniFilenames[modulePos] != ''){ bttn = document.getElementById(targetId); bttn.src = "pics/" + aniFilenames[modulePos]; } } stopAni = function(targetId){ modulePos = getPos(targetId,"bttn"); bttn = document.getElementById(targetId); bttn.src = "pics/" + picFilenames[modulePos]; }