diff --git a/Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox b/Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox index 2bb8e351e4..b567c4c83e 100644 --- a/Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox +++ b/Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox @@ -1,84 +1,84 @@ /** \page PluginListPage MITK Plugin Manuals The plugins and bundles provide much of the extended functionality of MITK. Each encapsulates a solution to a problem and associated features. This way one can easily assemble the necessary capabilites for a workflow without adding a lot of bloat, by combining plugins as needed. \subpage PluginListGeneralPage <ul> <li> \ref org_mitk_views_basicimageprocessing </li> <li> \ref org_mitk_views_datamanager </li> <li> \ref org_mitk_editors_dicombrowser </li> <li> \ref org_mitk_gui_qt_dicominspector </li> <li> \ref org_mitk_gui_qt_flowapplication </li> <li> \ref org_mitk_views_imagecropper </li> <li> \ref org_mitk_views_imagenavigator </li> <li> \ref org_blueberry_views_logview </li> <li> \ref org_mitk_views_matchpoint_algorithm_browser</li> <li> \ref org_mitk_views_matchpoint_algorithm_control</li> <li> \ref org_mitk_views_matchpoint_evaluator</li> <li> \ref org_mitk_views_matchpoint_framereg</li> <li> \ref org_mitk_views_matchpoint_manipulator</li> <li> \ref org_mitk_views_matchpoint_mapper</li> <li> \ref org_mitk_views_matchpoint_visualizer</li> <li> \ref org_mitk_gui_qt_measurementtoolbox </li> <li> \ref org_mitk_views_moviemaker </li> <li> \ref org_mitk_views_multilabelsegmentation </li> <li> \ref org_mitk_views_pointsetinteraction </li> <li> \ref org_mitk_gui_qt_python </li> <li> \ref org_mitk_gui_qt_remeshing </li> <li> \ref org_mitk_views_screenshotmaker </li> <li> \ref org_mitk_views_segmentation </li> <li> \ref org_mitk_gui_qt_flow_segmentation </li> <li> \ref org_mitk_gui_qt_viewnavigator </li> <li> \ref org_mitk_views_volumevisualization</li> </ul> \subpage PluginListSpecificPage <ul> <li> \ref org_mitk_views_properties </li> <li> \ref org_mitk_gui_qt_aicpregistration </li> <li> \ref org_mitk_gui_qt_cest </li> <li> \ref org_mitk_gui_qt_classificationsegmentation </li> <li> \ref org_mitk_views_cmdlinemodules </li> - <li> \ref org_mitk_gui_qt_pharmacokinetics_concentration_mri</li> + <li> \ref org_mitk_views_pharmacokinetics_concentration_mri</li> <li> \ref org_mitk_views_pharmacokinetics_mri</li> <li> \ref org_mitk_gui_qt_pharmacokinetics_pet</li> <li> \ref org_mitk_gui_qt_eventrecorder </li> <li> \ref org_mitk_gui_qt_examples </li> <li> \ref org_mitk_gui_qt_geometrytools </li> <li> \ref org_mitk_gui_qt_igtexample </li> <li> \ref org_mitk_gui_qt_igtlplugin</li> <li> \ref org_mitk_gui_qt_igttracking</li> <li> \ref org_mitk_gui_qt_igttrackingsemiautomaticmeasurement</li> <li> \ref org_mitk_views_imagestatistics</li> <li> \ref org_mitk_gui_qt_lasercontrol</li> <li> \ref org_mitk_gui_qt_fit_demo </li> <li> \ref org_mitk_gui_qt_fit_genericfitting </li> <li> \ref org_mitk_gui_qt_fit_inspector </li> <li> \ref org_mitkexamplesopencv</li> <li> \ref org_mitk_gui_qt_overlaymanager</li> <li> \ref org_mitk_gui_qt_mitkphenotyping</li> <li> \ref org_mitk_gui_qt_photoacoustics_pausmotioncompensation</li> <li> \ref org_mitk_example_gui_pcaexample</li> <li> \ref org_mitk_gui_qt_preprocessing_resampling</li> <li> \ref org_mitk_gui_qt_pharmacokinetics_curvedescriptor</li> <li> \ref org_mitk_gui_qt_photoacoustics_imageprocessing</li> <li> \ref org_mitk_gui_qt_pharmacokinetics_simulation</li> <li> \ref org_mitk_gui_qt_pointsetinteractionmultispectrum</li> <li> \ref org_mitk_gui_qt_renderwindowmanager</li> <li> \ref org_mitk_gui_qt_photoacoustics_spectralunmixing</li> <li> \ref org_mitk_gui_qt_spectrocamrecorder</li> <li> \ref org_surfacematerialeditor</li> <li> \ref org_toftutorial</li> <li> \ref org_blueberry_ui_qt_objectinspector</li> <li> \ref org_mitk_gui_qt_ultrasound</li> <li> \ref org_mitk_gui_qt_igt_app_echotrack </li> <li> \ref org_mitk_gui_qt_xnat</li> </ul> */ diff --git a/Documentation/Doxygen/2-UserManual/MITKPluginSpecificManualsList.dox b/Documentation/Doxygen/2-UserManual/MITKPluginSpecificManualsList.dox index 8be8a5f620..ef1ea02159 100644 --- a/Documentation/Doxygen/2-UserManual/MITKPluginSpecificManualsList.dox +++ b/Documentation/Doxygen/2-UserManual/MITKPluginSpecificManualsList.dox @@ -1,45 +1,45 @@ /** \page PluginListSpecificPage List of Application-specific Plugins \li \subpage org_mitk_gui_qt_aicpregistration \li \subpage org_mitk_gui_qt_cest \li \subpage org_mitk_gui_qt_classificationsegmentation \li \subpage org_mitk_gui_qt_flowapplication \li \subpage org_mitk_views_cmdlinemodules - \li \subpage org_mitk_gui_qt_pharmacokinetics_concentration_mri + \li \subpage org_mitk_views_pharmacokinetics_concentration_mri \li \subpage org_mitk_views_pharmacokinetics_mri \li \subpage org_mitk_gui_qt_pharmacokinetics_pet \li \subpage org_mitk_gui_qt_eventrecorder \li \subpage org_mitk_gui_qt_examples \li \subpage org_mitk_gui_qt_geometrytools \li \subpage org_mitk_gui_qt_igtexample \li \subpage org_mitk_gui_qt_igtlplugin \li \subpage org_mitk_gui_qt_igttracking \li \subpage org_mitk_gui_qt_igttrackingsemiautomaticmeasurement \li \subpage org_mitk_views_imagestatistics \li \subpage org_mitk_gui_qt_lasercontrol \li \subpage org_mitk_gui_qt_fit_demo \li \subpage org_mitk_gui_qt_fit_genericfitting \li \subpage org_mitk_gui_qt_fit_inspector \li \subpage org_mitkexamplesopencv \li \subpage org_mitk_gui_qt_overlaymanager \li \subpage org_mitk_gui_qt_mitkphenotyping \li \subpage org_mitk_gui_qt_photoacoustics_pausmotioncompensation \li \subpage org_mitk_example_gui_pcaexample \li \subpage org_mitk_gui_qt_preprocessing_resampling \li \subpage org_mitk_gui_qt_pharmacokinetics_curvedescriptor \li \subpage org_mitk_gui_qt_photoacoustics_imageprocessing \li \subpage org_mitk_gui_qt_pharmacokinetics_simulation \li \subpage org_mitk_gui_qt_pointsetinteractionmultispectrum \li \subpage org_mitk_gui_qt_renderwindowmanager \li \subpage org_mitk_gui_qt_photoacoustics_spectralunmixing \li \subpage org_mitk_gui_qt_spectrocamrecorder \li \subpage org_surfacematerialeditor \li \subpage org_blueberry_ui_qt_objectinspector \li \subpage org_toftutorial \li \subpage org_mitk_gui_qt_ultrasound \li \subpage org_mitk_gui_qt_igt_app_echotrack \li \subpage org_mitk_gui_qt_xnat */ \ No newline at end of file diff --git a/Plugins/org.mitk.gui.qt.pharmacokinetics.concentration.mri/documentation/UserManual/Manual.dox b/Plugins/org.mitk.gui.qt.pharmacokinetics.concentration.mri/documentation/UserManual/Manual.dox index 5e2afbb7fa..f6d7d075e8 100644 --- a/Plugins/org.mitk.gui.qt.pharmacokinetics.concentration.mri/documentation/UserManual/Manual.dox +++ b/Plugins/org.mitk.gui.qt.pharmacokinetics.concentration.mri/documentation/UserManual/Manual.dox @@ -1,32 +1,31 @@ /** -\page org_mitk_gui_qt_pharmacokinetics_concentration_mri The Concentration Curve Converter View +\page org_mitk_views_pharmacokinetics_concentration_mri The DCE Concentration Curve Converter View \imageMacro{pharmacokinetics_concentration_doc.svg,"Icon of the Concentration Curve Converter View",3.0} \tableofcontents -\section org_mitk_gui_qt_pharmacokinetics_concentration_mri_overview Overview -This view offers a dedicated tool for the conversion of MR image signal intensities to contrast agent (CA) concentration. +\section org_mitk_views_pharmacokinetics_concentration_mri_overview Overview +This view offers a dedicated tool for the conversion of DCE MR image signal intensities to contrast agent (CA) concentration. It contains a subset of the conversion tools for T1-weighted signal intensities, which are a part of the DCE MR Perfusion Datafit View (see \ref FIT_DCE_Settings_concentration). Additionally, it allows for conversion between T2-weighted MR signal intensities and contrast agent concentration. -\section org_mitk_gui_qt_pharmacokinetics_concentration_mri_Contact Contact information -This plug-in is being developed by the SIDT group (Software Development for Integrated Diagnostics and Therapy) at the German Cancer Research Center (DKFZ). +\section org_mitk_views_pharmacokinetics_concentration_mri_Contact Contact information If you have any questions, need support, find a bug or have a feature request, feel free to contact us at www.mitk.org. -\section org_mitk_gui_qt_pharmacokinetics_concentration_mri_T1_conversion Conversion of T1-weighted MRI data +\section org_mitk_views_pharmacokinetics_concentration_mri_T1_conversion Conversion of T1-weighted MRI data \imageMacro{concentration_curve_converter_T1_weighted4D.png,"Example screenshot of the conversion of T1-weighted MR images",3.0} The view offers the options to chose between a <i>3D Image</i> and a <i>4D image</i>. If a 4D image is selected, the <i>Selected Time Series</i> needs to be selected from the Data Manager. In this case, the baseline image is automatically extracted as the first time point image of the time series. In case of a 3D image to be converted, additionally to the selected 3D image a <i>Baseline Image (without CA)</i> has to be specified.\n\n In the configuration section, the following types of conversion can be chosen: - <i>Absolute Signal Enhancement</i>: The contrast agent concentration c is calculated according to the formula: c = k*S(t)-S(0), where S(t) is the dynamic signal intensity, S(0) the baseline signal and k a user-defined conversion factor. - <i>Relative Signal Enhancement</i>: The contrast agent concentration c is calculated according to the formula: c = k*(S(t)-S(0))/S(0), where S(t) is the dynamic signal intensity, S(0) the baseline signal and k a user-defined conversion factor. - <i>Turbo Flash Sequence</i>: The conversion from signal S(t) to contrast agent concentration c is calculated according to the turbo FLASH sequence specific formula: -\section org_mitk_gui_qt_pharmacokinetics_concentration_mri_T2_conversion Conversion of T2-weighted MRI data +\section org_mitk_views_pharmacokinetics_concentration_mri_T2_conversion Conversion of T2-weighted MRI data */ diff --git a/Plugins/org.mitk.gui.qt.pharmacokinetics.concentration.mri/plugin.xml b/Plugins/org.mitk.gui.qt.pharmacokinetics.concentration.mri/plugin.xml index ca8c8a0fe5..0e19a70b02 100644 --- a/Plugins/org.mitk.gui.qt.pharmacokinetics.concentration.mri/plugin.xml +++ b/Plugins/org.mitk.gui.qt.pharmacokinetics.concentration.mri/plugin.xml @@ -1,12 +1,12 @@ <?xml version="1.0" encoding="UTF-8"?> <plugin> <extension point="org.blueberry.ui.views"> - <view id="org.mitk.gui.qt.pharmacokinetics.concentration.mri" + <view id="org.mitk.views.pharmacokinetics.concentration.mri" name="Concentration Curve Converter View" category="Perfusion" class="ConcentrationCurveConverterView" icon="resources/icon.svg" /> </extension> </plugin>