diff --git a/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsReloadedView.cpp b/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsReloadedView.cpp index a533ed4009..47d4b333af 100644 --- a/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsReloadedView.cpp +++ b/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsReloadedView.cpp @@ -1,405 +1,405 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "QmitkImageStatisticsReloadedView.h" #include // berry includes #include #include #include #include #include #include #include #include #include #include #include #include #include const std::string QmitkImageStatisticsReloadedView::VIEW_ID = "org.mitk.views.imagestatisticsReloaded"; QmitkImageStatisticsReloadedView::QmitkImageStatisticsReloadedView(QObject* /*parent*/, const char* /*name*/) { this->m_CalculationThread = new QmitkImageStatisticsCalculationJob(); } QmitkImageStatisticsReloadedView::~QmitkImageStatisticsReloadedView() { if (m_selectedPlanarFigure) m_selectedPlanarFigure->RemoveObserver(m_PlanarFigureObserverTag); } void QmitkImageStatisticsReloadedView::CreateQtPartControl(QWidget *parent) { m_Controls.setupUi(parent); m_Controls.widget_histogram->SetTheme(this->GetColorTheme()); m_Controls.widget_intensityProfile->SetTheme(this->GetColorTheme()); m_Controls.groupBox_histogram->setVisible(true); m_Controls.groupBox_intensityProfile->setVisible(false); m_Controls.label_currentlyComputingStatistics->setVisible(false); m_Controls.sliderWidget_histogram->setPrefix("Time: "); m_Controls.sliderWidget_histogram->setDecimals(0); m_Controls.sliderWidget_histogram->setVisible(false); m_statisticsManager = mitk::ImageStatisticsContainerManager::New(); m_statisticsManager->SetDataStorage(this->GetDataStorage().GetPointer()); PrepareDataStorageComboBoxes(); CreateConnections(); } void QmitkImageStatisticsReloadedView::CreateConnections() { connect(this->m_CalculationThread, &QmitkImageStatisticsCalculationJob::finished, this, &QmitkImageStatisticsReloadedView::OnStatisticsCalculationEnds, Qt::QueuedConnection); connect(this->m_Controls.checkBox_ignoreZero, &QCheckBox::stateChanged, this, &QmitkImageStatisticsReloadedView::OnCheckBoxIgnoreZeroStateChanged); connect(this->m_Controls.sliderWidget_histogram, &ctkSliderWidget::valueChanged, this, &QmitkImageStatisticsReloadedView::OnSliderWidgetHistogramChanged); } void QmitkImageStatisticsReloadedView::OnCheckBoxIgnoreZeroStateChanged(int state) { m_ForceRecompute = true; if (state != Qt::Unchecked) { this->m_CalculationThread->SetIgnoreZeroValueVoxel(true); } else { this->m_CalculationThread->SetIgnoreZeroValueVoxel(false); } OnImageOrMaskSelectorChanged(); } void QmitkImageStatisticsReloadedView::OnSliderWidgetHistogramChanged(double value) { unsigned int timeStep = static_cast(value); auto mask = m_selectedMaskNode ? m_selectedMaskNode->GetData() : nullptr; auto imageStatistics = m_statisticsManager->GetImageStatistics(m_selectedImageNode->GetData(), mask); HistogramType::ConstPointer histogram = imageStatistics->GetStatisticsForTimeStep(timeStep).m_Histogram; if (histogram.IsNotNull() && this->m_CalculationThread->GetStatisticsUpdateSuccessFlag()) { this->FillHistogramWidget({ histogram }, { m_selectedImageNode->GetName() }); } } void QmitkImageStatisticsReloadedView::PartClosed(const berry::IWorkbenchPartReference::Pointer&) { } void QmitkImageStatisticsReloadedView::FillStatisticsWidget(mitk::StatisticsContainer::ConstPointer statistics) { m_Controls.widget_statistics->Reset(); m_Controls.widget_statistics->SetStatistics(statistics); m_Controls.widget_statistics->SetImageNodes({ m_selectedImageNode }); if (m_selectedMaskNode) { m_Controls.widget_statistics->SetMaskNodes({ m_selectedMaskNode }); } m_Controls.widget_statistics->setEnabled(true); } void QmitkImageStatisticsReloadedView::FillHistogramWidget(const std::vector& histogram, const std::vector& dataLabels) { m_Controls.groupBox_histogram->setVisible(true); m_Controls.widget_histogram->SetTheme(this->GetColorTheme()); m_Controls.widget_histogram->Reset(); m_Controls.widget_histogram->SetHistogram(histogram.front(), dataLabels.front()); connect(m_Controls.widget_histogram, &QmitkHistogramVisualizationWidget::RequestHistogramUpdate, this, &QmitkImageStatisticsReloadedView::OnRequestHistogramUpdate); } QmitkChartWidget::ChartStyle QmitkImageStatisticsReloadedView::GetColorTheme() const { ctkPluginContext* context = berry::WorkbenchPlugin::GetDefault()->GetPluginContext(); ctkServiceReference styleManagerRef = context->getServiceReference(); if (styleManagerRef) { auto styleManager = context->getService(styleManagerRef); if (styleManager->GetStyle().name == "Dark") { return QmitkChartWidget::ChartStyle::darkstyle; } else { return QmitkChartWidget::ChartStyle::lightstyle; } } return QmitkChartWidget::ChartStyle::darkstyle; } void QmitkImageStatisticsReloadedView::OnImageOrMaskSelectorChanged() { if (this->m_selectedPlanarFigure) { this->m_selectedPlanarFigure->RemoveObserver(this->m_PlanarFigureObserverTag); this->m_selectedPlanarFigure = nullptr; } m_selectedImageNode = m_Controls.imageSelector->GetSelectedNode(); m_selectedMaskNode = m_Controls.maskImageSelector->GetSelectedNode(); m_Controls.groupBox_intensityProfile->setVisible(false); //m_statisticContainerRules.clear(); if (m_selectedImageNode != nullptr) { auto image = dynamic_cast(m_selectedImageNode->GetData()); mitk::Image::Pointer mask = nullptr; mitk::PlanarFigure::Pointer maskPlanarFigure = nullptr; if (image->GetDimension() == 4) { m_Controls.sliderWidget_histogram->setVisible(true); unsigned int maxTimestep = image->GetTimeSteps(); - m_Controls.sliderWidget_histogram->setMaximum(maxTimestep); + m_Controls.sliderWidget_histogram->setMaximum(maxTimestep-1); } else { m_Controls.sliderWidget_histogram->setVisible(false); } if (m_selectedMaskNode != nullptr) { mask = dynamic_cast(m_selectedMaskNode->GetData()); if (mask == nullptr) { maskPlanarFigure = dynamic_cast(m_selectedMaskNode->GetData()); } } if (mask) { auto imageStatistics = m_statisticsManager->GetImageStatistics(image, mask.GetPointer()); bool imageStatisticsOlderThanInputs = false; if (imageStatistics && (imageStatistics->GetMTime() < image->GetMTime() || imageStatistics->GetMTime() < mask->GetMTime())) { imageStatisticsOlderThanInputs = true; } //compute statistics with given mask if (!imageStatistics || imageStatisticsOlderThanInputs || m_ForceRecompute) { CalculateStatistics(image, mask.GetPointer()); } //statistics already computed else { this->FillStatisticsWidget({ imageStatistics }); if (imageStatistics->TimeStepExists(0)) { this->FillHistogramWidget({ imageStatistics->GetStatisticsForTimeStep(0).m_Histogram.GetPointer() }, { m_selectedImageNode->GetName() }); } } } else if (maskPlanarFigure) { m_selectedPlanarFigure = maskPlanarFigure; ITKCommandType::Pointer changeListener = ITKCommandType::New(); changeListener->SetCallbackFunction(this, &QmitkImageStatisticsReloadedView::OnImageOrMaskSelectorChanged); this->m_PlanarFigureObserverTag = m_selectedPlanarFigure->AddObserver(mitk::EndInteractionPlanarFigureEvent(), changeListener); if (!maskPlanarFigure->IsClosed()) { //compute line profile and display statistics for voxels on line auto intensityProfile = mitk::ComputeIntensityProfile(image, maskPlanarFigure); //Don't show histogram for intensity profiles m_Controls.groupBox_histogram->setVisible(false); m_Controls.groupBox_intensityProfile->setVisible(true); m_Controls.widget_intensityProfile->Reset(); m_Controls.widget_intensityProfile->SetIntensityProfile(intensityProfile.GetPointer(), "Intensity Profile of " + m_selectedImageNode->GetName()); } auto imageStatistics = m_statisticsManager->GetImageStatistics(image, maskPlanarFigure.GetPointer()); bool imageStatisticsOlderThanInputs = false; if (imageStatistics && (imageStatistics->GetMTime() < image->GetMTime() || imageStatistics->GetMTime() < maskPlanarFigure->GetMTime())) { imageStatisticsOlderThanInputs = true; } //for all planar figures: compute statistics with planarFigure as mask if (!imageStatistics || imageStatisticsOlderThanInputs || m_ForceRecompute) { CalculateStatistics(image, nullptr, maskPlanarFigure.GetPointer()); } //statistics already computed else { this->FillStatisticsWidget({ imageStatistics }); if (maskPlanarFigure->IsClosed()) { if (imageStatistics->TimeStepExists(0)) { this->FillHistogramWidget({ imageStatistics->GetStatisticsForTimeStep(0).m_Histogram.GetPointer() }, { m_selectedImageNode->GetName() }); } } } } else { auto imageStatistics = m_statisticsManager->GetImageStatistics(image); bool imageStatisticsOlderThanInputs = false; if (imageStatistics && (imageStatistics->GetMTime() < image->GetMTime())) { imageStatisticsOlderThanInputs = true; } //compute statistics with image only if (!imageStatistics || imageStatisticsOlderThanInputs || m_ForceRecompute) { CalculateStatistics(image); } //statistics already computed else { this->FillStatisticsWidget({ imageStatistics }); if (imageStatistics->TimeStepExists(0)) { this->FillHistogramWidget({ imageStatistics->GetStatisticsForTimeStep(0).m_Histogram.GetPointer() }, { m_selectedImageNode->GetName() }); } } } } else { ResetGUI(); } m_ForceRecompute = false; } void QmitkImageStatisticsReloadedView::ResetGUI() { m_Controls.widget_statistics->Reset(); m_Controls.widget_statistics->setEnabled(false); m_Controls.widget_histogram->Reset(); m_Controls.widget_histogram->setEnabled(false); } void QmitkImageStatisticsReloadedView::OnStatisticsCalculationEnds() { mitk::StatusBar::GetInstance()->Clear(); if (this->m_CalculationThread->GetStatisticsUpdateSuccessFlag()) { auto statistic = m_CalculationThread->GetStatisticsData(); //for (auto& statistic : statistics) { mitk::PropertyRelations::RuleResultVectorType rulesForCurrentStatistic; auto statisticNonConst = statistic->Clone(); auto statisticsNodeName = m_selectedImageNode->GetName(); if (m_selectedMaskNode) { statisticsNodeName += "_" + m_selectedMaskNode->GetName(); } statisticsNodeName += "_statistics"; auto statisticsNode = mitk::CreateImageStatisticsNode(statisticNonConst, statisticsNodeName); auto imageRule = mitk::StatisticsToImageRelationRule::New(); imageRule->Connect(statisticNonConst.GetPointer(), m_CalculationThread->GetStatisticsImage().GetPointer()); rulesForCurrentStatistic.push_back(imageRule.GetPointer()); if (m_CalculationThread->GetMaskImage()) { auto maskRule = mitk::StatisticsToMaskRelationRule::New(); maskRule->Connect(statisticNonConst.GetPointer(), m_CalculationThread->GetMaskImage().GetPointer()); rulesForCurrentStatistic.push_back(maskRule.GetPointer()); } else if (m_CalculationThread->GetPlanarFigure()) { auto planarFigureRule = mitk::StatisticsToMaskRelationRule::New(); planarFigureRule->Connect(statisticNonConst.GetPointer(), m_CalculationThread->GetPlanarFigure().GetPointer()); rulesForCurrentStatistic.push_back(planarFigureRule.GetPointer()); } m_statisticContainerRules.push_back(rulesForCurrentStatistic); this->GetDataStorage()->Add(statisticsNode); m_statisticsManager->SetRules(m_statisticContainerRules); //} this->FillStatisticsWidget(statistic); if (!m_selectedPlanarFigure || m_selectedPlanarFigure->IsClosed()) { this->FillHistogramWidget({ m_CalculationThread->GetTimeStepHistogram() }, { m_selectedImageNode->GetName() }); } } else { mitk::StatusBar::GetInstance()->DisplayErrorText(m_CalculationThread->GetLastErrorMessage().c_str()); m_Controls.widget_histogram->setEnabled(false); m_Controls.widget_statistics->setEnabled(false); } m_Controls.label_currentlyComputingStatistics->setVisible(false); } void QmitkImageStatisticsReloadedView::OnRequestHistogramUpdate(unsigned int nBins) { m_CalculationThread->SetHistogramNBins(nBins); m_CalculationThread->start(); } void QmitkImageStatisticsReloadedView::CalculateStatistics(mitk::Image::ConstPointer image, mitk::Image::ConstPointer mask, mitk::PlanarFigure::ConstPointer maskPlanarFigure) { this->m_StatisticsUpdatePending = true; auto renderPart = this->GetRenderWindowPart(); unsigned int timeStep = renderPart->GetTimeNavigationController()->GetTime()->GetPos(); this->m_CalculationThread->Initialize(image, mask, maskPlanarFigure); this->m_CalculationThread->SetTimeStep(timeStep); try { // Compute statistics this->m_CalculationThread->start(); m_Controls.label_currentlyComputingStatistics->setVisible(true); } catch (const mitk::Exception& e) { mitk::StatusBar::GetInstance()->DisplayErrorText(e.GetDescription()); this->m_StatisticsUpdatePending = false; m_Controls.label_currentlyComputingStatistics->setVisible(false); } catch (const std::runtime_error &e) { mitk::StatusBar::GetInstance()->DisplayErrorText(e.what()); this->m_StatisticsUpdatePending = false; m_Controls.label_currentlyComputingStatistics->setVisible(false); } catch (const std::exception &e) { mitk::StatusBar::GetInstance()->DisplayErrorText(e.what()); this->m_StatisticsUpdatePending = false; m_Controls.label_currentlyComputingStatistics->setVisible(false); } } void QmitkImageStatisticsReloadedView::OnSelectionChanged(berry::IWorkbenchPart::Pointer part, const QList &nodes) { Q_UNUSED(part); Q_UNUSED(nodes); } void QmitkImageStatisticsReloadedView::PrepareDataStorageComboBoxes() { auto isPlanarFigurePredicate = mitk::GetImageStatisticsPlanarFigurePredicate(); auto isMaskPredicate = mitk::GetImageStatisticsMaskPredicate(); auto isImagePredicate = mitk::GetImageStatisticsImagePredicate(); auto isMaskOrPlanarFigurePredicate = mitk::NodePredicateOr::New(isPlanarFigurePredicate, isMaskPredicate); m_Controls.imageSelector->SetDataStorage(GetDataStorage()); m_Controls.imageSelector->SetPredicate(isImagePredicate); m_Controls.maskImageSelector->SetDataStorage(GetDataStorage()); m_Controls.maskImageSelector->SetPredicate(isMaskOrPlanarFigurePredicate); m_Controls.maskImageSelector->SetZeroEntryText(""); } void QmitkImageStatisticsReloadedView::Activated() { } void QmitkImageStatisticsReloadedView::Deactivated() { } void QmitkImageStatisticsReloadedView::Visible() { connect(m_Controls.imageSelector, static_cast(&QComboBox::currentIndexChanged), this, &QmitkImageStatisticsReloadedView::OnImageOrMaskSelectorChanged); connect(m_Controls.maskImageSelector, static_cast(&QComboBox::currentIndexChanged), this, &QmitkImageStatisticsReloadedView::OnImageOrMaskSelectorChanged); m_selectedImageNode = m_Controls.imageSelector->GetSelectedNode(); if (m_selectedImageNode) { OnImageOrMaskSelectorChanged(); } else { ResetGUI(); } } void QmitkImageStatisticsReloadedView::Hidden() { m_Controls.imageSelector->disconnect(); m_Controls.maskImageSelector->disconnect(); } void QmitkImageStatisticsReloadedView::SetFocus() { }