Merge branch 'T23431-SimulatePartialVolumeEffects' into T24512…
23f9e9b60ff3
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Description

Merge branch 'T23431-SimulatePartialVolumeEffects' into T24512-SetupPASimulationPipeline

Conflicts:
Modules/PhotoacousticsLib/MitkMCxyz/MitkMCxyz.cpp
Modules/PhotoacousticsLib/include/mitkPAVolume.h
Modules/PhotoacousticsLib/src/IO/mitkPAIOUtil.cpp
Modules/PhotoacousticsLib/test/mitkPhotoacousticVesselTest.cpp
Modules/PhotoacousticsLib/test/mitkSlicedVolumeGeneratorTest.cpp

Details

Provenance

• groehl	Authored on Apr 4 2018, 11:50 AM
• groehl	Pushed on Apr 4 2018, 11:52 AM
• groehl	Pushed on Apr 4 2018, 11:51 AM

Parents

rMITK9102761d9998: Merge branch 'T24539-GroupLasso'
rMITK372f15a6b0eb: create a script to simulate the in vitro phantom

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Event Timeline

• groehl committed rMITK23f9e9b60ff3: Merge branch 'T23431-SimulatePartialVolumeEffects' into T24512… (authored by • groehl).Apr 4 2018, 11:50 AM

Merged Changes

372f15a6b0eb create a script to simulate the in vitro phantom
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• groehl
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da1a30bbb208 add additional verbose IO debug output
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• groehl
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f04993a153de tissue batch generator for ce-qpai rebuttal
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• groehl
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fe57ed978587 add multi and singlevessel parameters
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• groehl
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f6555f7248ab implemented batch generation of tissues and integrated simulation
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• groehl
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7d951ccb25e7 fix a bug, where some vessels would not be simulated due to new out of bounds…
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• groehl
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97be7d190ce5 add empty TissueBatchGenerator.
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• groehl
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945aca009e7a Vessel generator will now generate the same vessels independent of the voxel…
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• groehl
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9c92b40fd0a8 Merge branch 'T23431-SimulatePartialVolumeEffects' of ssh://phabricator.mitk.
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• groehl
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2cba5f44e22e make vessel generation independent of resolution - add explicit spacing…
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• groehl
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bff1cc6c72df implemented a gaussian resampling from 10x the original resolution
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89c489d3075d first construction of how to implement a rescaling version of the partial…
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b9b607ec93fe it kinda works, but some handcrafting had to be done. - not scientifically…
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f950e3b7f823 first attempt. I know this is a bad description
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9e5808590abd UI changes following the vessel refactoring - remove gaussian blur from plugin…
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113a1fb3b1c6 include first attempt at partial volume effect around spheres - lower min…
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683660012efd fix crash on startup - nullptr dereference in std::string constructor
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Changes (46)

Path

Size

Modules/

PhotoacousticsLib/

CMakeLists.txt

MitkMCxyz/

MitkMCxyz.cpp

MitkPAPhantomGenerator

CMakeLists.txt

PAPhantomGenerator.cpp

files.cmake

MitkTissueBatchGenerator

CMakeLists.txt

TissueBatchGenerator.cpp

files.cmake

include/

mitkPAInSilicoTissueVolume.h

mitkPAPhantomTissueGenerator.h

mitkPATissueGeneratorParameters.h

mitkPAVector.h

mitkPAVessel.h

mitkPAVesselDrawer.h

mitkPAVesselProperties.h

mitkPAVolume.h

mitkPAVolumeManipulator.h

src/

Domain/

Vessel/

mitkPAVessel.cpp

mitkPAVesselMeanderStrategy.cpp

mitkPAVesselProperties.cpp

Volume/

mitkPAInSilicoTissueVolume.cpp

mitkPAVolume.cpp

Generator/

mitkPAPhantomTissueGenerator.cpp

mitkPASlicedVolumeGenerator.cpp

mitkPATissueGenerator.cpp

IO/

mitkPAIOUtil.cpp

Utils/

mitkPATissueGeneratorParameters.cpp

mitkPAVector.cpp

mitkPAVesselDrawer.cpp

mitkPAVolumeManipulator.cpp

test/

mitkPhotoacoustic3dVolumeTest.cpp

mitkPhotoacousticComposedVolumeTest.cpp

mitkPhotoacousticIOTest.cpp

mitkPhotoacousticNoiseGeneratorTest.cpp

mitkPhotoacousticTissueGeneratorTest.cpp

mitkPhotoacousticVesselTest.cpp

mitkPhotoacousticVesselTreeTest.cpp

mitkPhotoacousticVolumeTest.cpp

mitkSimulationBatchGeneratorTest.cpp

mitkSlicedVolumeGeneratorTest.cpp

Plugins/

org.mitk.gui.qt.photoacoustics.simulation/

src/

internal/

PASimulator.cpp

PASimulator.h

PASimulatorControls.ui

rMITK23f9e9b60ff3

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Modules/PhotoacousticsLib/CMakeLists.txt

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Modules/PhotoacousticsLib/MitkMCxyz/MitkMCxyz.cpp

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Modules/PhotoacousticsLib/MitkPAPhantomGenerator/CMakeLists.txt

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Modules/PhotoacousticsLib/MitkPAPhantomGenerator/PAPhantomGenerator.cpp

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Modules/PhotoacousticsLib/MitkPAPhantomGenerator/files.cmake

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Modules/PhotoacousticsLib/MitkTissueBatchGenerator/CMakeLists.txt

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Modules/PhotoacousticsLib/MitkTissueBatchGenerator/TissueBatchGenerator.cpp

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Modules/PhotoacousticsLib/MitkTissueBatchGenerator/files.cmake

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Modules/PhotoacousticsLib/files.cmake

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Modules/PhotoacousticsLib/include/mitkPAInSilicoTissueVolume.h

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Modules/PhotoacousticsLib/include/mitkPAPhantomTissueGenerator.h

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Modules/PhotoacousticsLib/include/mitkPATissueGeneratorParameters.h

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Modules/PhotoacousticsLib/include/mitkPAVector.h

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Modules/PhotoacousticsLib/include/mitkPAVessel.h

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Modules/PhotoacousticsLib/include/mitkPAVesselDrawer.h

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Modules/PhotoacousticsLib/include/mitkPAVesselProperties.h

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Modules/PhotoacousticsLib/include/mitkPAVolume.h

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Modules/PhotoacousticsLib/include/mitkPAVolumeManipulator.h

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Modules/PhotoacousticsLib/src/Domain/Vessel/mitkPAVessel.cpp

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Modules/PhotoacousticsLib/src/Domain/Vessel/mitkPAVesselMeanderStrategy.cpp

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Modules/PhotoacousticsLib/src/Domain/Vessel/mitkPAVesselProperties.cpp

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Modules/PhotoacousticsLib/src/Domain/Volume/mitkPAInSilicoTissueVolume.cpp

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Modules/PhotoacousticsLib/src/Domain/Volume/mitkPAVolume.cpp

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Modules/PhotoacousticsLib/src/Generator/mitkPAPhantomTissueGenerator.cpp

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Modules/PhotoacousticsLib/src/Generator/mitkPASlicedVolumeGenerator.cpp

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Modules/PhotoacousticsLib/src/Generator/mitkPATissueGenerator.cpp

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Modules/PhotoacousticsLib/src/IO/mitkPAIOUtil.cpp

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Modules/PhotoacousticsLib/src/Utils/mitkPATissueGeneratorParameters.cpp

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Modules/PhotoacousticsLib/src/Utils/mitkPAVector.cpp

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Modules/PhotoacousticsLib/src/Utils/mitkPAVesselDrawer.cpp

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Modules/PhotoacousticsLib/src/Utils/mitkPAVolumeManipulator.cpp

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Modules/PhotoacousticsLib/test/mitkPhotoacoustic3dVolumeTest.cpp

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Modules/PhotoacousticsLib/test/mitkPhotoacousticComposedVolumeTest.cpp

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Modules/PhotoacousticsLib/test/mitkPhotoacousticIOTest.cpp

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Modules/PhotoacousticsLib/test/mitkPhotoacousticNoiseGeneratorTest.cpp

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Modules/PhotoacousticsLib/test/mitkPhotoacousticTissueGeneratorTest.cpp

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Modules/PhotoacousticsLib/test/mitkPhotoacousticVesselTest.cpp

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Modules/PhotoacousticsLib/test/mitkPhotoacousticVesselTreeTest.cpp

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Modules/PhotoacousticsLib/test/mitkPhotoacousticVolumeTest.cpp

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Modules/PhotoacousticsLib/test/mitkSimulationBatchGeneratorTest.cpp

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Modules/PhotoacousticsLib/test/mitkSlicedVolumeGeneratorTest.cpp

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Plugins/org.mitk.gui.qt.photoacoustics.simulation/src/internal/PASimulator.cpp

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Plugins/org.mitk.gui.qt.photoacoustics.simulation/src/internal/PASimulator.h

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Plugins/org.mitk.gui.qt.photoacoustics.simulation/src/internal/PASimulatorControls.ui

Merge branch 'T23431-SimulatePartialVolumeEffects' into T24512…23f9e9b60ff3Actions

Description

Details

Event Timeline

Merged Changes

Changes (46)

rMITK23f9e9b60ff3

Modules/PhotoacousticsLib/CMakeLists.txt

Modules/PhotoacousticsLib/MitkMCxyz/MitkMCxyz.cpp

Modules/PhotoacousticsLib/MitkPAPhantomGenerator/CMakeLists.txt

Modules/PhotoacousticsLib/MitkPAPhantomGenerator/PAPhantomGenerator.cpp

Modules/PhotoacousticsLib/MitkPAPhantomGenerator/files.cmake

Modules/PhotoacousticsLib/MitkTissueBatchGenerator/CMakeLists.txt

Modules/PhotoacousticsLib/MitkTissueBatchGenerator/TissueBatchGenerator.cpp

Modules/PhotoacousticsLib/MitkTissueBatchGenerator/files.cmake

Modules/PhotoacousticsLib/files.cmake

Modules/PhotoacousticsLib/include/mitkPAInSilicoTissueVolume.h

Modules/PhotoacousticsLib/include/mitkPAPhantomTissueGenerator.h

Modules/PhotoacousticsLib/include/mitkPATissueGeneratorParameters.h

Modules/PhotoacousticsLib/include/mitkPAVector.h

Modules/PhotoacousticsLib/include/mitkPAVessel.h

Modules/PhotoacousticsLib/include/mitkPAVesselDrawer.h

Modules/PhotoacousticsLib/include/mitkPAVesselProperties.h

Modules/PhotoacousticsLib/include/mitkPAVolume.h

Modules/PhotoacousticsLib/include/mitkPAVolumeManipulator.h

Modules/PhotoacousticsLib/src/Domain/Vessel/mitkPAVessel.cpp

Modules/PhotoacousticsLib/src/Domain/Vessel/mitkPAVesselMeanderStrategy.cpp

Modules/PhotoacousticsLib/src/Domain/Vessel/mitkPAVesselProperties.cpp

Modules/PhotoacousticsLib/src/Domain/Volume/mitkPAInSilicoTissueVolume.cpp

Modules/PhotoacousticsLib/src/Domain/Volume/mitkPAVolume.cpp

Modules/PhotoacousticsLib/src/Generator/mitkPAPhantomTissueGenerator.cpp

Modules/PhotoacousticsLib/src/Generator/mitkPASlicedVolumeGenerator.cpp

Modules/PhotoacousticsLib/src/Generator/mitkPATissueGenerator.cpp

Modules/PhotoacousticsLib/src/IO/mitkPAIOUtil.cpp

Modules/PhotoacousticsLib/src/Utils/mitkPATissueGeneratorParameters.cpp

Modules/PhotoacousticsLib/src/Utils/mitkPAVector.cpp

Modules/PhotoacousticsLib/src/Utils/mitkPAVesselDrawer.cpp

Modules/PhotoacousticsLib/src/Utils/mitkPAVolumeManipulator.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacoustic3dVolumeTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticComposedVolumeTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticIOTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticNoiseGeneratorTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticTissueGeneratorTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticVesselTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticVesselTreeTest.cpp

Modules/PhotoacousticsLib/test/mitkPhotoacousticVolumeTest.cpp

Modules/PhotoacousticsLib/test/mitkSimulationBatchGeneratorTest.cpp

Modules/PhotoacousticsLib/test/mitkSlicedVolumeGeneratorTest.cpp

Plugins/org.mitk.gui.qt.photoacoustics.simulation/src/internal/PASimulator.cpp

Plugins/org.mitk.gui.qt.photoacoustics.simulation/src/internal/PASimulator.h

Plugins/org.mitk.gui.qt.photoacoustics.simulation/src/internal/PASimulatorControls.ui

Merge branch 'T23431-SimulatePartialVolumeEffects' into T24512…
23f9e9b60ff3
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