diff --git a/Core/Code/DataManagement/mitkMatrix.h b/Core/Code/DataManagement/mitkMatrix.h
new file mode 100644
index 0000000000..8b16008c6f
--- /dev/null
+++ b/Core/Code/DataManagement/mitkMatrix.h
@@ -0,0 +1,82 @@
+/*===================================================================
+
+The Medical Imaging Interaction Toolkit (MITK)
+
+Copyright (c) German Cancer Research Center,
+Division of Medical and Biological Informatics.
+All rights reserved.
+
+This software is distributed WITHOUT ANY WARRANTY; without
+even the implied warranty of MERCHANTABILITY or FITNESS FOR
+A PARTICULAR PURPOSE.
+
+See LICENSE.txt or http://www.mitk.org for details.
+
+===================================================================*/
+
+#ifndef MITKMATRIX_H_
+#define MITKMATRIX_H_
+
+#include "mitkTypeBasics.h"
+#include <itkMatrix.h>
+
+namespace mitk
+{
+
+  template< class T, unsigned int NRows = 3, unsigned int NColumns = 3 >
+  class Matrix : public itk::Matrix<T, NRows, NColumns>
+  {
+  public:
+
+    /** Standard class typedefs. */
+    typedef Matrix Self;
+
+    typedef typename itk::Matrix<T, NRows, NColumns>::InternalMatrixType InternalMatrixType;
+
+    /** Default constructor. */
+    Matrix<T, NRows, NColumns>() :
+        itk::Matrix<T, NRows, NColumns>() {}
+
+    /** Copy constructor. */
+    Matrix<T, NRows, NColumns>(const Matrix & matrix) :
+            itk::Matrix<T, NRows, NColumns>(matrix) {}
+
+    /** Copy constructor for itk compatibility */
+    Matrix<T, NRows, NColumns>(const itk::Matrix<T, NRows, NColumns> & matrix) :
+            itk::Matrix<T, NRows, NColumns>(matrix) {}
+
+    /**For every operator=, there should be an equivalent copy constructor. */
+    inline Matrix<T, NRows, NColumns>(const vnl_matrix< T > & matrix) :
+        itk::Matrix<T, NRows, NColumns>(matrix) {}
+
+    /**For every operator=, there should be an equivalent copy constructor. */
+    inline explicit Matrix<T, NRows, NColumns>(InternalMatrixType & matrix) :
+        itk::Matrix<T, NRows, NColumns>(matrix) {}
+
+    /**
+     * Necessary because otherwise operator= is default operator= from Matrix.
+     */
+    using itk::Matrix<T, NRows, NColumns>::operator=;
+
+
+
+    /**
+     * Warning: Array must have same dimension as Matrix
+     */
+    void CopyToArray(ScalarType const array_p[NRows][NColumns]) const
+    {
+      for (int i = 0; i < this->GetPointDimension(); i++)
+      {
+        array_p[i] = this->GetElement(i);
+      }
+    }
+  };
+
+  typedef Matrix<ScalarType,2,2> Matrix2D;
+  typedef Matrix<ScalarType,3,3> Matrix3D;
+  typedef Matrix<ScalarType,4,4> Matrix4D;
+
+}
+
+
+#endif /* MITKMATRIX_H_ */
diff --git a/Core/Code/DataManagement/mitkPoint.h b/Core/Code/DataManagement/mitkPoint.h
index 841bdeeeec..652ed61c82 100644
--- a/Core/Code/DataManagement/mitkPoint.h
+++ b/Core/Code/DataManagement/mitkPoint.h
@@ -1,76 +1,76 @@
 /*===================================================================
 
 The Medical Imaging Interaction Toolkit (MITK)
 
 Copyright (c) German Cancer Research Center,
 Division of Medical and Biological Informatics.
 All rights reserved.
 
 This software is distributed WITHOUT ANY WARRANTY; without
 even the implied warranty of MERCHANTABILITY or FITNESS FOR
 A PARTICULAR PURPOSE.
 
 See LICENSE.txt or http://www.mitk.org for details.
 
 ===================================================================*/
 
 
 #ifndef MITKPOINT_H
 #define MITKPOINT_H
 
 
 #include <itkPoint.h>
 #include "mitkTypeBasics.h"
 
 
 namespace mitk {
 
   //##Documentation
   //##@brief enumeration of the type a point can be
   enum PointSpecificationType
   {
     PTUNDEFINED = 0,
     PTSTART,
     PTCORNER,
     PTEDGE,
     PTEND
   };
 
   template<class TCoordRep, unsigned int NPointDimension = 3>
   class Point : public itk::Point<TCoordRep, NPointDimension>
   {
 
   public:
     /** Default constructor has nothing to do. */
-    Point<TCoordRep, NPointDimension>() {}
+    Point<TCoordRep, NPointDimension>() : itk::Point<TCoordRep, NPointDimension>() {}
 
     /** Pass-through constructors for the Array base class. */
     Point<TCoordRep, NPointDimension>(const mitk::Point<TCoordRep, NPointDimension>& r) : itk::Point<TCoordRep, NPointDimension>(r) {}
     Point<TCoordRep, NPointDimension>(const TCoordRep r[NPointDimension]):itk::Point<TCoordRep, NPointDimension>(r) {}
     Point<TCoordRep, NPointDimension>(const TCoordRep & v):itk::Point<TCoordRep, NPointDimension>(v) {}
     Point<TCoordRep, NPointDimension>(const itk::Point<TCoordRep, NPointDimension> r) : itk::Point<TCoordRep, NPointDimension>(r) {}
 
     /**
      * Warning: Array must have same dimension as Point
      */
-    void CopyToArray(ScalarType* const array_p) const
+    void CopyToArray(ScalarType array_p[NPointDimension]) const
     {
       for (int i = 0; i < this->GetPointDimension(); i++)
         {
           array_p[i] = this->GetElement(i);
         }
     }
   };
 
   typedef Point<ScalarType,2> Point2D;
   typedef Point<ScalarType,3> Point3D;
   typedef Point<ScalarType,4> Point4D;
 
   typedef Point<int,2> Point2I;
   typedef Point<int,3> Point3I;
   typedef Point<int,4> Point4I;
 
 } // namespace mitk
 
 
 #endif /* MITKPOINT_H */
diff --git a/Core/Code/DataManagement/mitkTypedefs.h b/Core/Code/DataManagement/mitkTypedefs.h
index a4832024ff..a4d5267949 100644
--- a/Core/Code/DataManagement/mitkTypedefs.h
+++ b/Core/Code/DataManagement/mitkTypedefs.h
@@ -1,52 +1,52 @@
 /*===================================================================
 
 The Medical Imaging Interaction Toolkit (MITK)
 
 Copyright (c) German Cancer Research Center,
 Division of Medical and Biological Informatics.
 All rights reserved.
 
 This software is distributed WITHOUT ANY WARRANTY; without
 even the implied warranty of MERCHANTABILITY or FITNESS FOR
 A PARTICULAR PURPOSE.
 
 See LICENSE.txt or http://www.mitk.org for details.
 
 ===================================================================*/
 
 #ifndef MITKTYPEDEFS_H_
 #define MITKTYPEDEFS_H_
 
 
 #include <itkIndex.h>
 #include <itkContinuousIndex.h>
 #include <itkVector.h>
 #include <itkMatrix.h>
 #include <itkTransform.h>
 #include <vnl/vnl_quaternion.h>
 #include <utility>
 
 #include "mitkTypeBasics.h"
 
 //template<class TCoordRep, unsigned int NPointDimension>  class Vector;
 
 namespace mitk {
 
-typedef itk::Matrix<ScalarType, 3, 3> Matrix3D;
-typedef itk::Matrix<ScalarType,4,4> Matrix4D;
 typedef vnl_matrix_fixed<ScalarType, 3, 3> VnlMatrix3D;
+
 typedef itk::Transform<ScalarType, 3, 3> Transform3D;
+
 typedef vnl_vector<ScalarType> VnlVector;
 typedef vnl_vector_ref<ScalarType> VnlVectorRef;
 
 typedef itk::Index<3> Index3D;
 typedef itk::ContinuousIndex<ScalarType, 3> ContinuousIndex3D;
 typedef vnl_quaternion<ScalarType> Quaternion;
 
 typedef itk::NumericTraits<mitk::ScalarType> ScalarTypeNumericTraits;
 
 typedef std::pair<std::string, bool> FileServiceOption;
 
 }
 
 #endif /* MITKTYPEDEFS_H_ */
diff --git a/Core/Code/DataManagement/mitkTypes.h b/Core/Code/DataManagement/mitkTypes.h
index 86d4b4a40e..d8541e7fc5 100644
--- a/Core/Code/DataManagement/mitkTypes.h
+++ b/Core/Code/DataManagement/mitkTypes.h
@@ -1,259 +1,260 @@
 /*===================================================================
 
 The Medical Imaging Interaction Toolkit (MITK)
 
 Copyright (c) German Cancer Research Center,
 Division of Medical and Biological Informatics.
 All rights reserved.
 
 This software is distributed WITHOUT ANY WARRANTY; without
 even the implied warranty of MERCHANTABILITY or FITNESS FOR
 A PARTICULAR PURPOSE.
 
 See LICENSE.txt or http://www.mitk.org for details.
 
 ===================================================================*/
 
 
 #ifndef MITKVECTOR_H_HEADER_INCLUDED_C1EBD0AD
 #define MITKVECTOR_H_HEADER_INCLUDED_C1EBD0AD
 
 // this is needed for memcopy in ITK
 // can be removed when fixed in ITK
 #include <cstring>
 
 #include <itkPoint.h>
 #include <float.h>
 #include <itkIndex.h>
 #include <itkContinuousIndex.h>
 #include <itkVector.h>
 #include <itkMatrix.h>
 #include <itkTransform.h>
 #include <vnl/vnl_quaternion.h>
 #include <MitkExports.h>
 
 #include "mitkTypeBasics.h"
 #include "mitkTypedefs.h"
 #include "mitkPoint.h" // TODO SW: should not be included here, maybe generate one "general datatype include" like mitkPrimitives.h
 #include "mitkVector.h"
+#include "mitkMatrix.h"
 
 #include "mitkOldTypeConversions.h"
 
 
 #ifndef DOXYGEN_SKIP
 
 namespace mitk {
 
 
 template <class T, unsigned int NVectorDimension>
   itk::Vector<T, NVectorDimension> operator+(const itk::Vector<T, NVectorDimension> &vector, const itk::Point<T, NVectorDimension> &point)
 {
   itk::Vector<T, NVectorDimension> sub;
   for( unsigned int i=0; i<NVectorDimension; i++)
   {
     sub[i] = vector[i]+point[i];
   }
   return sub;
 }
 
 template <class T, unsigned int NVectorDimension>
   inline itk::Vector<T, NVectorDimension>& operator+=(itk::Vector<T, NVectorDimension> &vector, const itk::Point<T, NVectorDimension> &point)
 {
   for( unsigned int i=0; i<NVectorDimension; i++)
   {
     vector[i] += point[i];
   }
   return vector;
 }
 
 template <class T, unsigned int NVectorDimension>
   itk::Vector<T, NVectorDimension> operator-(const itk::Vector<T, NVectorDimension> &vector, const itk::Point<T, NVectorDimension> &point)
 {
   itk::Vector<T, NVectorDimension> sub;
   for( unsigned int i=0; i<NVectorDimension; i++)
   {
     sub[i] = vector[i]-point[i];
   }
   return sub;
 }
 
 template <class T, unsigned int NVectorDimension>
   inline itk::Vector<T, NVectorDimension>& operator-=(itk::Vector<T, NVectorDimension> &vector, const itk::Point<T, NVectorDimension> &point)
 {
   for( unsigned int i=0; i<NVectorDimension; i++)
   {
     vector[i] -= point[i];
   }
   return vector;
 }
 
 /*!
 \brief Check for matrix equality with a user defined accuracy. As an equality metric the root mean squared error (RMS) of all elements is calculated.
 \param matrix1 first vnl matrix
 \param matrix2 second vnl matrix
 \param epsilon user defined accuracy bounds
 */
 template <typename TCoordRep, unsigned int NRows, unsigned int NCols>
 inline bool MatrixEqualRMS(const vnl_matrix_fixed<TCoordRep,NRows,NCols>& matrix1,const vnl_matrix_fixed<TCoordRep,NRows,NCols>& matrix2,mitk::ScalarType epsilon=mitk::eps)
 {
   if ( (matrix1.rows() == matrix2.rows()) && (matrix1.cols() == matrix2.cols()) )
   {
     vnl_matrix_fixed<TCoordRep,NRows,NCols> differenceMatrix = matrix1-matrix2;
     if (differenceMatrix.rms()<epsilon)
     {
       return true;
     }
     else
     {
       return false;
     }
   }
   else
   {
     return false;
   }
 }
 
 /*!
 \brief Check for matrix equality with a user defined accuracy. As an equality metric the root mean squared error (RMS) of all elements is calculated.
 \param matrix1 first itk matrix
 \param matrix2 second itk matrix
 \param epsilon user defined accuracy bounds
 */
 template <typename TCoordRep, unsigned int NRows, unsigned int NCols>
 inline bool MatrixEqualRMS(const itk::Matrix<TCoordRep, NRows, NCols>& matrix1,const itk::Matrix<TCoordRep, NRows, NCols>& matrix2,mitk::ScalarType epsilon=mitk::eps)
 {
   return mitk::MatrixEqualRMS(matrix1.GetVnlMatrix(),matrix2.GetVnlMatrix(),epsilon);
 }
 
 /*!
 \brief Check for element-wise matrix equality with a user defined accuracy.
 \param matrix1 first vnl matrix
 \param matrix2 second vnl matrix
 \param epsilon user defined accuracy bounds
 */
 template <typename TCoordRep, unsigned int NRows, unsigned int NCols>
 inline bool MatrixEqualElementWise(const vnl_matrix_fixed<TCoordRep,NRows,NCols>& matrix1,const vnl_matrix_fixed<TCoordRep,NRows,NCols>& matrix2,mitk::ScalarType epsilon=mitk::eps)
 {
   if ( (matrix1.rows() == matrix2.rows()) && (matrix1.cols() == matrix2.cols()) )
   {
     for( unsigned int r=0; r<NRows; r++)
     {
       for( unsigned int c=0; c<NCols; c++ )
       {
         TCoordRep difference =  fabs(matrix1(r,c)-matrix2(r,c));
         if (difference>epsilon)
         {
           return false;
         }
       }
     }
     return true;
   }
   else
   {
     return false;
   }
 }
 
 /*!
 \brief Check for element-wise matrix equality with a user defined accuracy.
 \param matrix1 first itk matrix
 \param matrix2 second itk matrix
 \param epsilon user defined accuracy bounds
 */
 template <typename TCoordRep, unsigned int NRows, unsigned int NCols>
 inline bool MatrixEqualElementWise(const itk::Matrix<TCoordRep, NRows, NCols>& matrix1,const itk::Matrix<TCoordRep, NRows, NCols>& matrix2,mitk::ScalarType epsilon=mitk::eps)
 {
   return mitk::MatrixEqualElementWise(matrix1.GetVnlMatrix(),matrix2.GetVnlMatrix(),epsilon);
 }
 
 template <typename TCoordRep, unsigned int NPointDimension>
 inline bool Equal(const itk::Vector<TCoordRep, NPointDimension>& vector1, const itk::Vector<TCoordRep, NPointDimension>& vector2, TCoordRep eps=mitk::eps)
 {
   typename itk::Vector<TCoordRep, NPointDimension>::VectorType diff = vector1-vector2;
   for (unsigned int i=0; i<NPointDimension; i++)
       if (diff[i]>eps || diff[i]<-eps)
       return false;
   return true;
 }
 
 template <typename TCoordRep, unsigned int NPointDimension>
   inline bool Equal(const itk::Point<TCoordRep, NPointDimension>& vector1, const itk::Point<TCoordRep, NPointDimension>& vector2, TCoordRep eps=mitk::eps)
 {
   typename itk::Point<TCoordRep, NPointDimension>::VectorType diff = vector1-vector2;
   for (unsigned int i=0; i<NPointDimension; i++)
     if (diff[i]>eps || diff[i]<-eps)
       return false;
   return true;
 }
 
 inline bool Equal(const mitk::VnlVector& vector1, const mitk::VnlVector& vector2, ScalarType eps=mitk::eps)
 {
   mitk::VnlVector diff = vector1-vector2;
   for (unsigned int i=0; i<diff.size(); i++)
     if (diff[i]>eps || diff[i]<-eps)
       return false;
   return true;
 }
 
 inline bool Equal(ScalarType scalar1, ScalarType scalar2, ScalarType eps=mitk::eps)
 {
   return fabs(scalar1-scalar2) < eps;
 }
 
 template <typename TCoordRep, unsigned int NPointDimension>
   inline bool Equal(const vnl_vector_fixed<TCoordRep, NPointDimension> & vector1, const vnl_vector_fixed<TCoordRep, NPointDimension>& vector2, TCoordRep eps=mitk::eps)
 {
   vnl_vector_fixed<TCoordRep, NPointDimension> diff = vector1-vector2;
   bool returnValue = true;
   for( unsigned int i=0; i<diff.size(); i++)
   {
     if(diff[i]>eps || diff[i]<-eps)
     {
      returnValue = false;
     }
   }
 
   return returnValue;
 }
 
 
 
 } // namespace mitk
 
 #endif //DOXYGEN_SKIP
 
 /*
  * This part of the code has been shifted here to avoid compiler clashes
  * caused by including <itkAffineGeometryFrame.h> before the declaration of
  * the Equal() methods above. This problem occurs when using MSVC and is
  * probably related to a compiler bug.
  */
 
 #include <itkAffineGeometryFrame.h>
 
 namespace mitk
 {
   typedef itk::AffineGeometryFrame<ScalarType, 3>::TransformType AffineTransform3D;
 }
 
 
 #define mitkSetConstReferenceMacro(name,type) \
   virtual void Set##name (const type & _arg) \
   { \
     itkDebugMacro("setting " << #name " to " << _arg ); \
     if (this->m_##name != _arg) \
       { \
       this->m_##name = _arg; \
       this->Modified(); \
       } \
   }
 
 #define mitkSetVectorMacro(name,type) \
   mitkSetConstReferenceMacro(name,type)
 
 #define mitkGetVectorMacro(name,type) \
   itkGetConstReferenceMacro(name,type)
 
 #endif /* MITKVECTOR_H_HEADER_INCLUDED_C1EBD0AD */
diff --git a/Core/Code/DataManagement/mitkVector.h b/Core/Code/DataManagement/mitkVector.h
index 77c837e77d..e604dd56ad 100644
--- a/Core/Code/DataManagement/mitkVector.h
+++ b/Core/Code/DataManagement/mitkVector.h
@@ -1,58 +1,59 @@
 /*===================================================================
 
 The Medical Imaging Interaction Toolkit (MITK)
 
 Copyright (c) German Cancer Research Center,
 Division of Medical and Biological Informatics.
 All rights reserved.
 
 This software is distributed WITHOUT ANY WARRANTY; without
 even the implied warranty of MERCHANTABILITY or FITNESS FOR
 A PARTICULAR PURPOSE.
 
 See LICENSE.txt or http://www.mitk.org for details.
 
 ===================================================================*/
 
 #ifndef MITKVECTOR_H_
 #define MITKVECTOR_H_
 
 
 #include <itkVector.h>
 
 #include "mitkTypeBasics.h"
 
 namespace mitk
 {
 
-  template<class TCoordRep, unsigned int NPointDimension = 3>
-  class Vector : public itk::Vector<TCoordRep, NPointDimension>
+  template<class TCoordRep, unsigned int NVectorDimension = 3>
+  class Vector : public itk::Vector<TCoordRep, NVectorDimension>
   {
   public:
     /** Default constructor has nothing to do. */
-    Vector<TCoordRep, NPointDimension>() {}
+    Vector<TCoordRep, NVectorDimension>() {}
 
     /** Pass-through constructors for the Array base class. */
-    Vector<TCoordRep, NPointDimension>(const Vector<TCoordRep, NPointDimension>& r) : itk::Vector<TCoordRep, NPointDimension>(r) {}
-    Vector<TCoordRep, NPointDimension>(const TCoordRep r[NPointDimension]):itk::Vector<TCoordRep, NPointDimension>(r) {}
-    Vector<TCoordRep, NPointDimension>(const TCoordRep & v):itk::Vector<TCoordRep, NPointDimension>(v) {}
-    Vector<TCoordRep, NPointDimension>(const itk::Vector<TCoordRep, NPointDimension> r) : itk::Vector<TCoordRep, NPointDimension>(r) {}
+    Vector<TCoordRep, NVectorDimension>(const Vector<TCoordRep, NVectorDimension>& r) : itk::Vector<TCoordRep, NVectorDimension>(r) {}
+    Vector<TCoordRep, NVectorDimension>(const TCoordRep r[NVectorDimension]):itk::Vector<TCoordRep, NVectorDimension>(r) {}
+    Vector<TCoordRep, NVectorDimension>(const TCoordRep & v):itk::Vector<TCoordRep, NVectorDimension>(v) {}
+    Vector<TCoordRep, NVectorDimension>(const itk::Vector<TCoordRep, NVectorDimension> r) : itk::Vector<TCoordRep, NVectorDimension>(r) {}
+
     /**
-     * Warning: Array must have same dimension as Point
+     * Warning: Array must have same dimension as Vector
      */
-    void CopyToArray(ScalarType* const array_p) const
+    void CopyToArray(ScalarType array_p[NVectorDimension]) const
     {
-      for (int i = 0; i < this->GetPointDimension(); i++)
+      for (int i = 0; i < this->GetVectorDimension(); i++)
         {
           array_p[i] = this->GetElement(i);
         }
     }
   };
 
   typedef Vector<ScalarType,2> Vector2D;
   typedef Vector<ScalarType,3> Vector3D;
   typedef Vector<ScalarType,4> Vector4D;
 
 }
 
 #endif /* MITKVECTOR_H_ */
diff --git a/Core/Code/files.cmake b/Core/Code/files.cmake
index b83afc3abe..ca25c38d13 100644
--- a/Core/Code/files.cmake
+++ b/Core/Code/files.cmake
@@ -1,369 +1,372 @@
 set(H_FILES
   Algorithms/itkImportMitkImageContainer.h
   Algorithms/itkImportMitkImageContainer.txx
   Algorithms/itkLocalVariationImageFilter.h
   Algorithms/itkLocalVariationImageFilter.txx
   Algorithms/itkMITKScalarImageToHistogramGenerator.h
   Algorithms/itkMITKScalarImageToHistogramGenerator.txx
   Algorithms/itkTotalVariationDenoisingImageFilter.h
   Algorithms/itkTotalVariationDenoisingImageFilter.txx
   Algorithms/itkTotalVariationSingleIterationImageFilter.h
   Algorithms/itkTotalVariationSingleIterationImageFilter.txx
   Algorithms/mitkBilateralFilter.h
   Algorithms/mitkBilateralFilter.cpp
   Algorithms/mitkInstantiateAccessFunctions.h
   Algorithms/mitkPixelTypeList.h
   # Preprocessor macros taken from Boost
   Algorithms/mitkPPArithmeticDec.h
   Algorithms/mitkPPArgCount.h
   Algorithms/mitkPPCat.h
   Algorithms/mitkPPConfig.h
   Algorithms/mitkPPControlExprIIf.h
   Algorithms/mitkPPControlIf.h
   Algorithms/mitkPPControlIIf.h
   Algorithms/mitkPPDebugError.h
   Algorithms/mitkPPDetailAutoRec.h
   Algorithms/mitkPPDetailDMCAutoRec.h
   Algorithms/mitkPPExpand.h
   Algorithms/mitkPPFacilitiesEmpty.h
   Algorithms/mitkPPFacilitiesExpand.h
   Algorithms/mitkPPLogicalBool.h
   Algorithms/mitkPPRepetitionDetailDMCFor.h
   Algorithms/mitkPPRepetitionDetailEDGFor.h
   Algorithms/mitkPPRepetitionDetailFor.h
   Algorithms/mitkPPRepetitionDetailMSVCFor.h
   Algorithms/mitkPPRepetitionFor.h
   Algorithms/mitkPPSeqElem.h
   Algorithms/mitkPPSeqForEach.h
   Algorithms/mitkPPSeqForEachProduct.h
   Algorithms/mitkPPSeq.h
   Algorithms/mitkPPSeqEnum.h
   Algorithms/mitkPPSeqSize.h
   Algorithms/mitkPPSeqToTuple.h
   Algorithms/mitkPPStringize.h
   Algorithms/mitkPPTupleEat.h
   Algorithms/mitkPPTupleElem.h
   Algorithms/mitkPPTupleRem.h
   Algorithms/mitkClippedSurfaceBoundsCalculator.h
   Algorithms/mitkExtractSliceFilter.h
   Algorithms/mitkConvert2Dto3DImageFilter.h
   Algorithms/mitkPlaneClipping.h
 
   Common/mitkExceptionMacro.h
   Common/mitkServiceBaseObject.h
   Common/mitkTestingMacros.h
 
   DataManagement/mitkImageAccessByItk.h
   DataManagement/mitkImageCast.h
   DataManagement/mitkImagePixelAccessor.h
   DataManagement/mitkImagePixelReadAccessor.h
   DataManagement/mitkImagePixelWriteAccessor.h
   DataManagement/mitkImageReadAccessor.h
   DataManagement/mitkImageWriteAccessor.h
   DataManagement/mitkITKImageImport.h
   DataManagement/mitkITKImageImport.txx
   DataManagement/mitkImageToItk.h
   DataManagement/mitkImageToItk.txx
   DataManagement/mitkOldTypeConversions.h
   DataManagement/mitkTypedefs.h
+  DataManagement/mitkVector.h
+  DataManagement/mitkPoint.h
+  DataManagement/mitkMatrix.h
 
   Interactions/mitkEventMapperAddOn.h
   Interfaces/mitkIDataNodeReader.h
 
   Rendering/mitkLocalStorageHandler.h
 
   IO/mitkPixelTypeTraits.h
 )
 
 set(CPP_FILES
   Algorithms/mitkBaseDataSource.cpp
   Algorithms/mitkDataNodeSource.cpp
   Algorithms/mitkGeometry2DDataToSurfaceFilter.cpp
   Algorithms/mitkHistogramGenerator.cpp
   Algorithms/mitkImageChannelSelector.cpp
   Algorithms/mitkImageSliceSelector.cpp
   Algorithms/mitkImageSource.cpp
   Algorithms/mitkImageTimeSelector.cpp
   Algorithms/mitkImageToImageFilter.cpp
   Algorithms/mitkImageToSurfaceFilter.cpp
   Algorithms/mitkPointSetSource.cpp
   Algorithms/mitkPointSetToPointSetFilter.cpp
   Algorithms/mitkRGBToRGBACastImageFilter.cpp
   Algorithms/mitkSubImageSelector.cpp
   Algorithms/mitkSurfaceSource.cpp
   Algorithms/mitkSurfaceToImageFilter.cpp
   Algorithms/mitkSurfaceToSurfaceFilter.cpp
   Algorithms/mitkUIDGenerator.cpp
   Algorithms/mitkVolumeCalculator.cpp
   Algorithms/mitkClippedSurfaceBoundsCalculator.cpp
   Algorithms/mitkExtractSliceFilter.cpp
   Algorithms/mitkConvert2Dto3DImageFilter.cpp
   Controllers/mitkBaseController.cpp
   Controllers/mitkCallbackFromGUIThread.cpp
   Controllers/mitkCameraController.cpp
   Controllers/mitkCameraRotationController.cpp
   Controllers/mitkCoreActivator.cpp
   Controllers/mitkFocusManager.cpp
   Controllers/mitkLimitedLinearUndo.cpp
   Controllers/mitkOperationEvent.cpp
   Controllers/mitkPlanePositionManager.cpp
   Controllers/mitkProgressBar.cpp
   Controllers/mitkRenderingManager.cpp
   Controllers/mitkSliceNavigationController.cpp
   Controllers/mitkSlicesCoordinator.cpp
   Controllers/mitkSlicesRotator.cpp
   Controllers/mitkSlicesSwiveller.cpp
   Controllers/mitkStatusBar.cpp
   Controllers/mitkStepper.cpp
   Controllers/mitkTestManager.cpp
   Controllers/mitkUndoController.cpp
   Controllers/mitkVerboseLimitedLinearUndo.cpp
   Controllers/mitkVtkInteractorCameraController.cpp
   Controllers/mitkVtkLayerController.cpp
   DataManagement/mitkAbstractTransformGeometry.cpp
   DataManagement/mitkAnnotationProperty.cpp
   DataManagement/mitkApplicationCursor.cpp
   DataManagement/mitkBaseData.cpp
   DataManagement/mitkBaseProperty.cpp
   DataManagement/mitkClippingProperty.cpp
   DataManagement/mitkChannelDescriptor.cpp
   DataManagement/mitkColorProperty.cpp
   DataManagement/mitkDataStorage.cpp
   #DataManagement/mitkDataTree.cpp
   DataManagement/mitkDataNode.cpp
   DataManagement/mitkDataNodeFactory.cpp
   #DataManagement/mitkDataTreeStorage.cpp
   DataManagement/mitkDisplayGeometry.cpp
   DataManagement/mitkEnumerationProperty.cpp
   DataManagement/mitkGeometry2D.cpp
   DataManagement/mitkGeometry2DData.cpp
   DataManagement/mitkGeometry3D.cpp
   DataManagement/mitkGeometryData.cpp
   DataManagement/mitkGroupTagProperty.cpp
   DataManagement/mitkImage.cpp
   DataManagement/mitkImageAccessorBase.cpp
   DataManagement/mitkImageCaster.cpp
   DataManagement/mitkImageCastPart1.cpp
   DataManagement/mitkImageCastPart2.cpp
   DataManagement/mitkImageCastPart3.cpp
   DataManagement/mitkImageCastPart4.cpp
   DataManagement/mitkImageDataItem.cpp
   DataManagement/mitkImageDescriptor.cpp
   DataManagement/mitkImageVtkAccessor.cpp
   DataManagement/mitkImageStatisticsHolder.cpp
   DataManagement/mitkLandmarkBasedCurvedGeometry.cpp
   DataManagement/mitkLandmarkProjectorBasedCurvedGeometry.cpp
   DataManagement/mitkLandmarkProjector.cpp
   DataManagement/mitkLevelWindow.cpp
   DataManagement/mitkLevelWindowManager.cpp
   DataManagement/mitkLevelWindowPreset.cpp
   DataManagement/mitkLevelWindowProperty.cpp
   DataManagement/mitkLookupTable.cpp
   DataManagement/mitkLookupTables.cpp # specializations of GenericLookupTable
   DataManagement/mitkMemoryUtilities.cpp
   DataManagement/mitkModalityProperty.cpp
   DataManagement/mitkModeOperation.cpp
   DataManagement/mitkNodePredicateAnd.cpp
   DataManagement/mitkNodePredicateBase.cpp
   DataManagement/mitkNodePredicateCompositeBase.cpp
   DataManagement/mitkNodePredicateData.cpp
   DataManagement/mitkNodePredicateDataType.cpp
   DataManagement/mitkNodePredicateDimension.cpp
   DataManagement/mitkNodePredicateFirstLevel.cpp
   DataManagement/mitkNodePredicateNot.cpp
   DataManagement/mitkNodePredicateOr.cpp
   DataManagement/mitkNodePredicateProperty.cpp
   DataManagement/mitkNodePredicateSource.cpp
   DataManagement/mitkPlaneOrientationProperty.cpp
   DataManagement/mitkPlaneGeometry.cpp
   DataManagement/mitkPlaneOperation.cpp
   DataManagement/mitkPointOperation.cpp
   DataManagement/mitkPointSet.cpp
   DataManagement/mitkProperties.cpp
   DataManagement/mitkPropertyList.cpp
   DataManagement/mitkRestorePlanePositionOperation.cpp
   DataManagement/mitkRotationOperation.cpp
   DataManagement/mitkSlicedData.cpp
   DataManagement/mitkSlicedGeometry3D.cpp
   DataManagement/mitkSmartPointerProperty.cpp
   DataManagement/mitkStandaloneDataStorage.cpp
   DataManagement/mitkStateTransitionOperation.cpp
   DataManagement/mitkStringProperty.cpp
   DataManagement/mitkSurface.cpp
   DataManagement/mitkSurfaceOperation.cpp
   DataManagement/mitkThinPlateSplineCurvedGeometry.cpp
   DataManagement/mitkTimeSlicedGeometry.cpp
   DataManagement/mitkTransferFunction.cpp
   DataManagement/mitkTransferFunctionProperty.cpp
   DataManagement/mitkTransferFunctionInitializer.cpp
   DataManagement/mitkVector.cpp
   DataManagement/mitkTypeBasics.cpp
   DataManagement/mitkVtkInterpolationProperty.cpp
   DataManagement/mitkVtkRepresentationProperty.cpp
   DataManagement/mitkVtkResliceInterpolationProperty.cpp
   DataManagement/mitkVtkScalarModeProperty.cpp
   DataManagement/mitkVtkVolumeRenderingProperty.cpp
   DataManagement/mitkWeakPointerProperty.cpp
   DataManagement/mitkRenderingModeProperty.cpp
   DataManagement/mitkShaderProperty.cpp
   DataManagement/mitkResliceMethodProperty.cpp
   DataManagement/mitkMaterial.cpp
   DataManagement/mitkPointSetShapeProperty.cpp
   Interactions/mitkAction.cpp
   Interactions/mitkAffineInteractor.cpp
   Interactions/mitkBindDispatcherInteractor.cpp
   Interactions/mitkCoordinateSupplier.cpp
   Interactions/mitkDataInteractor.cpp
   Interactions/mitkDispatcher.cpp
   Interactions/mitkDisplayCoordinateOperation.cpp
   Interactions/mitkDisplayInteractor.cpp
   Interactions/mitkDisplayPositionEvent.cpp
 #  Interactions/mitkDisplayVectorInteractorLevelWindow.cpp # legacy, prob even now unneeded
 #  Interactions/mitkDisplayVectorInteractorScroll.cpp
   Interactions/mitkEvent.cpp
   Interactions/mitkEventConfig.cpp
   Interactions/mitkEventDescription.cpp
   Interactions/mitkEventFactory.cpp
   Interactions/mitkInteractionEventHandler.cpp
   Interactions/mitkEventMapper.cpp
   Interactions/mitkEventStateMachine.cpp
   Interactions/mitkGlobalInteraction.cpp
   Interactions/mitkInteractor.cpp
   Interactions/mitkInternalEvent.cpp
   Interactions/mitkInteractionEvent.cpp
   Interactions/mitkInteractionEventConst.cpp
   Interactions/mitkInteractionPositionEvent.cpp
   Interactions/mitkInteractionKeyEvent.cpp
   Interactions/mitkMousePressEvent.cpp
   Interactions/mitkMouseMoveEvent.cpp
   Interactions/mitkMouseReleaseEvent.cpp
   Interactions/mitkMouseWheelEvent.cpp
   Interactions/mitkMouseDoubleClickEvent.cpp
   Interactions/mitkMouseModeSwitcher.cpp
   Interactions/mitkMouseMovePointSetInteractor.cpp
   Interactions/mitkMoveBaseDataInteractor.cpp
   Interactions/mitkNodeDepententPointSetInteractor.cpp
   Interactions/mitkPointSetDataInteractor.cpp
   Interactions/mitkPointSetInteractor.cpp
   Interactions/mitkPositionEvent.cpp
   Interactions/mitkPositionTracker.cpp
   Interactions/mitkStateMachineAction.cpp
   Interactions/mitkStateMachineCondition.cpp
   Interactions/mitkStateMachineState.cpp
   Interactions/mitkStateMachineTransition.cpp
   Interactions/mitkState.cpp
   Interactions/mitkStateMachineContainer.cpp
   Interactions/mitkStateEvent.cpp
   Interactions/mitkStateMachine.cpp
   Interactions/mitkStateMachineFactory.cpp
   Interactions/mitkTransition.cpp
   Interactions/mitkWheelEvent.cpp
   Interactions/mitkKeyEvent.cpp
   Interactions/mitkVtkEventAdapter.cpp
   Interactions/mitkVtkInteractorStyle.cxx
   Interactions/mitkCrosshairPositionEvent.cpp
 
   Interfaces/mitkInteractionEventObserver.cpp
   Interfaces/mitkIShaderRepository.cpp
 
   IO/mitkBaseDataIOFactory.cpp
   IO/mitkCoreDataNodeReader.cpp
   IO/mitkDicomSeriesReader.cpp
   IO/mitkFileReader.cpp
   IO/mitkFileSeriesReader.cpp
   IO/mitkFileWriter.cpp
   #IO/mitkIpPicGet.c
   IO/mitkImageGenerator.cpp
   IO/mitkImageWriter.cpp
   IO/mitkImageWriterFactory.cpp
   IO/mitkItkImageFileIOFactory.cpp
   IO/mitkItkImageFileReader.cpp
   IO/mitkItkLoggingAdapter.cpp
   IO/mitkItkPictureWrite.cpp
   IO/mitkIOUtil.cpp
   IO/mitkLookupTableProperty.cpp
   IO/mitkOperation.cpp
   #IO/mitkPicFileIOFactory.cpp
   #IO/mitkPicFileReader.cpp
   #IO/mitkPicFileWriter.cpp
   #IO/mitkPicHelper.cpp
   #IO/mitkPicVolumeTimeSeriesIOFactory.cpp
   #IO/mitkPicVolumeTimeSeriesReader.cpp
   IO/mitkPixelType.cpp
   IO/mitkPointSetIOFactory.cpp
   IO/mitkPointSetReader.cpp
   IO/mitkPointSetWriter.cpp
   IO/mitkPointSetWriterFactory.cpp
   IO/mitkRawImageFileReader.cpp
   IO/mitkStandardFileLocations.cpp
   IO/mitkSTLFileIOFactory.cpp
   IO/mitkSTLFileReader.cpp
   IO/mitkSurfaceVtkWriter.cpp
   IO/mitkSurfaceVtkWriterFactory.cpp
   IO/mitkVtkLoggingAdapter.cpp
   IO/mitkVtiFileIOFactory.cpp
   IO/mitkVtiFileReader.cpp
   IO/mitkVtkImageIOFactory.cpp
   IO/mitkVtkImageReader.cpp
   IO/mitkVtkSurfaceIOFactory.cpp
   IO/mitkVtkSurfaceReader.cpp
   IO/vtkPointSetXMLParser.cpp
   IO/mitkLog.cpp
   Rendering/mitkBaseRenderer.cpp
   Rendering/mitkVtkMapper.cpp
   Rendering/mitkRenderWindowFrame.cpp
   Rendering/mitkGeometry2DDataMapper2D.cpp
   Rendering/mitkGeometry2DDataVtkMapper3D.cpp
   Rendering/mitkGLMapper.cpp
   Rendering/mitkGradientBackground.cpp
   Rendering/mitkManufacturerLogo.cpp
   Rendering/mitkMapper.cpp
   Rendering/mitkPointSetGLMapper2D.cpp
   Rendering/mitkPointSetVtkMapper2D.cpp
   Rendering/mitkPointSetVtkMapper3D.cpp
   Rendering/mitkPolyDataGLMapper2D.cpp
   Rendering/mitkSurfaceGLMapper2D.cpp
   Rendering/mitkSurfaceVtkMapper3D.cpp
   Rendering/mitkVolumeDataVtkMapper3D.cpp
   Rendering/mitkVtkPropRenderer.cpp
   Rendering/mitkVtkWidgetRendering.cpp
   Rendering/vtkMitkRectangleProp.cpp
   Rendering/vtkMitkRenderProp.cpp
   Rendering/mitkVtkEventProvider.cpp
   Rendering/mitkRenderWindow.cpp
   Rendering/mitkRenderWindowBase.cpp
   Rendering/mitkShaderRepository.cpp
   Rendering/mitkImageVtkMapper2D.cpp
   Rendering/vtkMitkThickSlicesFilter.cpp
   Rendering/vtkMitkLevelWindowFilter.cpp
   Rendering/vtkNeverTranslucentTexture.cpp
   Rendering/mitkRenderingTestHelper.cpp
 
   Common/mitkException.cpp
   Common/mitkCommon.h
   Common/mitkCoreObjectFactoryBase.cpp
   Common/mitkCoreObjectFactory.cpp
   Common/mitkCoreServices.cpp
 )
 
 list(APPEND CPP_FILES ${CppMicroServices_SOURCES})
 
 set(RESOURCE_FILES
 Interactions/globalConfig.xml
 Interactions/DisplayInteraction.xml
 Interactions/DisplayConfig.xml
 Interactions/DisplayConfigPACS.xml
 Interactions/DisplayConfigPACSPan.xml
 Interactions/DisplayConfigPACSScroll.xml
 Interactions/DisplayConfigPACSZoom.xml
 Interactions/DisplayConfigPACSLevelWindow.xml
 Interactions/DisplayConfigMITK.xml
 Interactions/PointSet.xml
 Interactions/Legacy/StateMachine.xml
 Interactions/Legacy/DisplayConfigMITKTools.xml
 Interactions/PointSetConfig.xml
 
 Shaders/mitkShaderLighting.xml
 
 mitkLevelWindowPresets.xml
 )