diff --git a/Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox b/Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox
index 65f55c948f..ebc50fb2f7 100644
--- a/Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox
+++ b/Documentation/Doxygen/2-UserManual/MITKPluginManualsList.dox
@@ -1,77 +1,81 @@
 /**
 \page PluginListPage MITK Plugin Manuals
 
 The plugins and bundles provide much of the extended functionality of MITK. Each encapsulates a solution to a problem and associated features. This way one can easily assemble the necessary capabilites for a workflow without adding a lot of bloat, by combining plugins as needed.
 
 
-\paragraph PluginListPageEndUserPluginList List of Plugins 
+\paragraph PluginListPageEndUserPluginList List of General Purpose Plugins 
 
   \li \subpage org_blueberry_ui_qt_log
   \li \subpage org_mitk_views_basicimageprocessing
   \li \subpage org_mitk_views_cmdlinemodules
   \li \subpage org_mitk_gui_qt_chartExample
   \li \subpage org_mitk_views_datamanager
   \li \subpage org_mitk_gui_qt_dicom
   \li \subpage org_mitk_gui_qt_dicominspector
-  \li \subpage org_mitk_gui_qt_diffusionimaging
   \li \subpage org_mitk_gui_qt_imagecropper
   \li \subpage org_mitk_views_imagenavigator
   \li \subpage org_mitk_gui_qt_measurementtoolbox
   \li \subpage org_mitk_gui_qt_moviemaker
   \li \subpage org_mitk_views_screenshotmaker
   \li \subpage org_mitk_views_pointsetinteraction
   \li \subpage org_mitk_gui_qt_pointsetinteractionmultispectrum
   \li \subpage org_mitk_gui_qt_python
   \li \subpage org_mitk_gui_qt_remeshing
   \li \subpage org_mitk_views_segmentation
   \li \subpage org_mitk_views_multilabelsegmentation
-  \li \subpage org_mitk_gui_qt_spectrocamrecorder
-  \li \subpage org_mitk_gui_qt_ultrasound
   \li \subpage org_mitk_gui_qt_viewnavigator
-  \li \subpage org_mitk_views_volumevisualization
-  \li \subpage org_mitk_gui_qt_xnat
+
+
+\paragraph PluginListPageEndUserPluginList List of Application-specific Plugins 
+
   \li \subpage org_mitk_gui_qt_aicpregistration
-  \li \subpage org_mitk_gui_qt_igtlplugin
-  \li \subpage org_mitk_gui_qt_geometrytools
+  \li \subpage org_mitk_gui_qt_cest
   \li \subpage org_mitk_gui_qt_classificationsegmentation
+  \li \subpage org_mitk_gui_qt_diffusionimaging
+  \li \subpage org_mitk_gui_qt_eventrecorder
+  \li \subpage org_mitk_gui_qt_examples
+  \li \subpage org_mitk_gui_qt_fit_demo
+  \li \subpage org_mitk_gui_qt_fit_genericfitting
+  \li \subpage org_mitk_gui_qt_fit_inspector
+  \li \subpage org_mitk_gui_qt_geometrytools
+  \li \subpage org_mitk_gui_qt_igt_app_echotrack
+  \li \subpage org_mitk_gui_qt_igtexample
+  \li \subpage org_mitk_gui_qt_igtlplugin
+  \li \subpage org_mitk_gui_qt_igttracking
+  \li \subpage org_mitk_gui_qt_igttrackingsemiautomaticmeasurement
+  \li \subpage org_mitk_gui_qt_lasercontrol
   \li \subpage org_mitk_gui_qt_matchpoint_algorithm_batch
   \li \subpage org_mitk_gui_qt_matchpoint_algorithm_browser
   \li \subpage org_mitk_gui_qt_matchpoint_algorithm_control
   \li \subpage org_mitk_gui_qt_matchpoint_evaluator
   \li \subpage org_mitk_gui_qt_matchpoint_framereg
   \li \subpage org_mitk_gui_qt_matchpoint_manipulator
   \li \subpage org_mitk_gui_qt_matchpoint_mapper
   \li \subpage org_mitk_gui_qt_matchpoint_visualizer
-  \li \subpage org_mitk_gui_qt_cest
-  \li \subpage org_mitk_gui_qt_fit_genericfitting
-  \li \subpage org_mitk_gui_qt_fit_inspector
+  \li \subpage org_mitk_gui_qt_overlaymanager
+  \li \subpage org_mitk_gui_qt_mitkphenotyping
+  \li \subpage org_mitk_gui_qt_photoacoustics_pausmotioncompensation
+  \li \subpage org_mitk_example_gui_pcaexample
   \li \subpage org_mitk_gui_qt_pharmacokinetics_mri
   \li \subpage org_mitk_gui_qt_pharmacokinetics_pet
   \li \subpage org_mitk_gui_qt_pharmacokinetics_concentration_mri
   \li \subpage org_mitk_gui_qt_pharmacokinetics_curvedescriptor
+  \li \subpage org_mitk_gui_qt_photoacoustics_imageprocessing
+  \li \subpage org_mitk_gui_qt_pharmacokinetics_simulation
+  \li \subpage org_mitk_gui_qt_photoacoustics_spectralunmixing
+  \li \subpage org_mitk_gui_qt_radiomics
+  \li \subpage org_mitk_gui_qt_renderwindowmanager
+  \li \subpage org_mitk_gui_qt_spectrocamrecorder
   \li \subpage org_surfacematerialeditor
   \li \subpage org_toftutorial
-  \li \subpage org_mitk_gui_qt_examples
+  \li \subpage org_mitk_gui_qt_ultrasound
+  \li \subpage org_mitk_views_volumevisualization
+  \li \subpage org_mitk_gui_qt_xnat
+
   \li \subpage org_mitkexamplesopencv
-  \li \subpage org_mitk_gui_qt_igtexample
-  \li \subpage org_mitk_gui_qt_igttracking
-  \li \subpage org_mitk_gui_qt_igt_app_echotrack
   \li \subpage org_blueberry_ui_qt_objectinspector
-  \li \subpage org_mitk_gui_qt_eventrecorder
-  \li \subpage org_mitk_gui_qt_overlaymanager
-  \li \subpage org_mitk_example_gui_pcaexample
-  \li \subpage org_mitk_gui_qt_radiomics
-  \li \subpage org_mitk_gui_qt_renderwindowmanager
-  \li \subpage org_mitk_gui_qt_lasercontrol
-  \li \subpage org_mitk_gui_qt_photoacoustics_imageprocessing
-  \li \subpage org_mitk_gui_qt_photoacoustics_pausmotioncompensation
-  \li \subpage org_mitk_gui_qt_photoacoustics_spectralunmixing
-  \li \subpage org_mitk_gui_qt_lasercontrol
-  \li \subpage org_mitk_gui_qt_igttrackingsemiautomaticmeasurement
-  \li \subpage org_mitk_gui_qt_fit_demo
-  \li \subpage org_mitk_gui_qt_mitkphenotyping
-  \li \subpage org_mitk_gui_qt_pharmacokinetics_simulation
 
 
 
 */
\ No newline at end of file
diff --git a/Plugins/org.mitk.gui.qt.ext/documentation/UserManual/MITKUserManual.dox b/Plugins/org.mitk.gui.qt.ext/documentation/UserManual/MITKUserManual.dox
index 0ccefd04c1..e188603c98 100644
--- a/Plugins/org.mitk.gui.qt.ext/documentation/UserManual/MITKUserManual.dox
+++ b/Plugins/org.mitk.gui.qt.ext/documentation/UserManual/MITKUserManual.dox
@@ -1,106 +1,111 @@
 /**
 \page MITKWorkbenchManualPage The MITK Workbench
 
 Welcome to the basic MITK user manual. This document tries to give a concise overview of the basic functions of MITK and be an comprehensible guide on using them. 
 
-\tableofcontents
 
-
-\section MITKUserManualPageUserInterface The User Interface
+<div align="center"><h1>The User Interface </h1></div>
 
 The layout of the MITK applications is designed to give a clear distinction between the different work areas. The following figure gives an overview of the main sections of the user interface.
 
 \imageMacro{MITKUserManual_GUICommented.png,"The Common MITK Application Graphical User Interface",16.00}
 
 The datamanager and the \ref MITKUserManualPagePerspectives have their own help sections. This document explains the use of:
-  - The \ref MITKUserManualPageMultiWidget
-  - The \ref MITKUserManualPageMenu
+  - The \ref Four Window View
+  - The \ref Menu
   - The \ref MITKUserManualPageLevelWindow
   - The \ref MITKUserManualPageMemoryUsage
   - The \ref MITKUserManualPageViews
 
-\section MITKUserManualPageMultiWidget Four Window View  
+<div align="center"><h1>Four Window View   </h1></div>
   
-\subsection MITKUserManualPageMultiWidgetOverview Overview
+<h2>Overview </h2>
+
 
 The four window view is the heart of the MITK image viewing. The standard layout is three 2D windows and one 3D window, with the axial window in the top left quarter, the sagittal window in the top right quarter, the coronal window in the lower left quarter and the 3D window in the lower right quarter. The different planes form a crosshair that can be seen in the 3D window.
   
 Once you select a point within the picture, informations about it are displayed at the bottom of the screen.
 
-\subsection MITKUserManualPageMultiWidgetNavigation Navigation
+<h2>Navigation </h2>
+
 
 Left click in any of the 2D windows centers the crosshair on that point. Pressing the right mouse button and moving the mouse <B>zooms</B> in and out. By scrolling with the mouse wheel you can <B>navigate through</B> the slices of the active window and pressing the mouse wheel while moving the mouse <B>pans</B> the image section.
 
 In the 3D window you can <B>rotate</B> the object by pressing the left mouse button and moving the mouse, <B>zoom</B> either with the right mouse button as in 2D or with the mouse wheel, and <B>pan</B> the object by moving the mouse while the mouse wheel is pressed. Placing the cursor within the 3D window and holding the "F" key allows <B>free flight</B> into the 3D view.
 
-\subsection MITKUserManualPageMultiWidgetCustomizingViews Customizing
+<h2>Customizing</h2>
+
 
 By moving the cursor to the upper right corner of any window you can activate the window menu. It consists of three buttons.
 
 \imageMacro{MITKUserManual_CrosshairModes.png,"Crosshair",8.72}
 
 The crosshair button allows you toggle the crosshair, reset the view and change the behaviour of the planes. 
 
 Activating either of the rotation modes allows you to rotate the planes visible in a 2D window by moving the mouse cursor close to them and click and dragging once it changes to indicate that rotation can be done.
 
 The swivel mode is recommended only for advanced users as the planes can be moved freely by clicking and dragging anywhere within a 2D window.
 
 
 The middle button expands the corresponding window to fullscreen within the four window view.
 
 \imageMacro{MITKUserManual_ViewsChoices.png,"Layout Choices",5.19}
 
 The right button allows you to choose between many different layouts of the four window view to use the one most suited to your task.
   
-\section MITKUserManualPageMenu Menu
+<div align="center"><h1>Menu</h1></div>
+
+
+<h2>File</h2>
 
-\subsection MITKUserManualPageFile File
 This dialog allows you to save, load and clear entire projects, this includes any nodes in the data manager. 
 
-\subsection MITKUserManualPageEdit Edit
+<h2>Edit</h2>
 This dialog supports undo and redo operations as well as the image navigator, which gives you sliders to navigate through the data quickly.
 
-\subsection MITKUserManualPageWindow Window
+<h2>Window</h2>
 
 This dialog allows you to open a new window, change between perspectives and reset your current one to default settings.
 
 
 If you want to use an operation of a certain perspective within another perspective the "Show View" menu allows to select a specific function that is opened and can be moved within the working areas according to your wishes. Be aware that not every function works with every perspective in a meaningful way.
 
 The Preferences dialog allows you to adjust and save your custom settings.
 
 \imageMacro{MITKUserManual_WindowDropdown.png,"Preferences",4.89}
 
-\subsection MITKUserManualPageHelp Help
+<h2>Help </h2>
+
 This dialog contains this help, the welcome screen and information about MITK.
 
-\section MITKUserManualPageLevelWindow Levelwindow
+<div align="center"><h1>Levelwindow</h1></div>
 
 Once an image is loaded the levelwindow appears to the right hand side of the four window view. With this tool you can adjust the range of grey values displayed and the gradient between them. Moving the lower boundary up results in any pixels having a value lower than that boundary to be displayed as black. Lowering the upper boundary causes all pixels having a value higher than it to be displayed as white.
 
 The pixels with a value between the lower and upper boundary are displayed in different shades of grey. This way a smaller levelwindow results in higher contrasts while cutting of the information outside its range whereas a larger levelwindow displays more information at the cost of contrast and detail.
 
 You can pick the levelwindow with the mouse to move it up and down, while moving the mouse cursor to the left or right to change its size. Picking one of the boundaries with a left click allows you to change the size symmetrically. Holding CTRL and clicking a boundary adjusts only that value.
 
 With line edit fields below you can directly adjust the levelwindow. The upper field describes the center of the levelwindow, the bottom the span of the window around the center. By selecting one of fields and typing any number you can set these two parameters.
 
-\section MITKUserManualPageMemoryUsage System Load Indicator
+<div align="center"><h1>System Load Indicator</h1></div>
+
 
 The System Load Indicator in the lower right hand corner of the screen gives information about the memory currently required by the MITK application. Keep in mind that image processing is a highly memory intensive task and monitor the indicator to avoid your system freezing while constantly swapping to the hard drive.
 
-\section MITKUserManualPageViews Views
+<div align="center"><h1>Views</h1></div>
 
 Each solution for a specific problem that is self contained is realized as a single view. Thus you can create a workflow for your problem by combining the capabilities of different views to suit your needs.
-One elegant way to do this is by combining views in \ref MITKUserManualPagePerspectives.
+One elegant way to do this is by combining views in perspectives.
 
 By pressing and holding the left mouse button on a views tab you can move it around to suit your needs, even out of the application window. 
 
-\section MITKUserManualPagePerspectives Perspectives
+<div align="center"><h1>Perspectives </h1></div>
 
 The different tasks that arise in medical imaging need very different approaches. To acknowledge this circumstance MITK supplies a framework that can be build uppon by very different solutions to those tasks. These solutions are called perspectives, each of them works independently of others although they might be used in sequence to achieve the solution of more difficult problems.
 
 It is possible to switch between the perspectives using the "Window"->"Open Perspective" dialog.
 
 
-See \ref MITKUserManualPageMenu for more information about switching perspectives.
+See menu for more information about switching perspectives.
 */