diff --git a/Modules/DiffusionImaging/FiberTracking/SignalModels/mitkAstroStickModel.cpp b/Modules/DiffusionImaging/FiberTracking/SignalModels/mitkAstroStickModel.cpp index 94a37eb1b4..ee2b139e23 100644 --- a/Modules/DiffusionImaging/FiberTracking/SignalModels/mitkAstroStickModel.cpp +++ b/Modules/DiffusionImaging/FiberTracking/SignalModels/mitkAstroStickModel.cpp @@ -1,127 +1,127 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include #include #include using namespace mitk; template< class ScalarType > AstroStickModel< ScalarType >::AstroStickModel() : m_BValue(1000) , m_Diffusivity(0.001) , m_NumSticks(42) , m_RandomizeSticks(false) { this->m_RandGen = itk::Statistics::MersenneTwisterRandomVariateGenerator::New(); this->m_RandGen->SetSeed(); vnl_matrix_fixed* sticks = itk::PointShell<42, vnl_matrix_fixed >::DistributePointShell(); for (unsigned int i=0; iget(0,i); stick[1] = sticks->get(1,i); stick[2] = sticks->get(2,i); stick.Normalize(); m_Sticks.push_back(stick); } } template< class ScalarType > AstroStickModel< ScalarType >::~AstroStickModel() { } template< class ScalarType > ScalarType AstroStickModel< ScalarType >::SimulateMeasurement(unsigned int dir) { ScalarType signal = 0; if (dir>=this->m_GradientList.size()) return signal; ScalarType b = -m_BValue*m_Diffusivity; if (m_RandomizeSticks) // random number of sticks m_NumSticks = 30 + this->m_RandGen->GetIntegerVariate()%31; GradientType g = this->m_GradientList[dir]; ScalarType bVal = g.GetNorm(); bVal *= bVal; if (bVal>0.0001) // is weighted direction { for (unsigned int j=0; j typename AstroStickModel< ScalarType >::GradientType AstroStickModel< ScalarType >::GetRandomDirection() { GradientType vec; vec[0] = this->m_RandGen->GetNormalVariate(); vec[1] = this->m_RandGen->GetNormalVariate(); vec[2] = this->m_RandGen->GetNormalVariate(); vec.Normalize(); return vec; } template< class ScalarType > typename AstroStickModel< ScalarType >::PixelType AstroStickModel< ScalarType >::SimulateMeasurement() { PixelType signal; signal.SetSize(this->m_GradientList.size()); ScalarType b = -m_BValue*m_Diffusivity; if (m_RandomizeSticks) m_NumSticks = 30 + this->m_RandGen->GetIntegerVariate()%31; for( unsigned int i=0; im_GradientList.size(); i++) { GradientType g = this->m_GradientList[i]; ScalarType bVal = g.GetNorm(); bVal *= bVal; if (bVal>0.0001) { for (unsigned int j=0; j