diff --git a/CMake/Whitelists/ClassificationCmdApps.cmake b/CMake/Whitelists/ClassificationCmdApps.cmake
index a8b1d36b67..19011af613 100644
--- a/CMake/Whitelists/ClassificationCmdApps.cmake
+++ b/CMake/Whitelists/ClassificationCmdApps.cmake
@@ -1,22 +1,20 @@
include(${CMAKE_CURRENT_LIST_DIR}/CoreCmdApps.cmake)
list(APPEND enabled_modules
Classification
CLCore
CLVigraRandomForest
CLUtilities
CLMRUtilities
CLImportanceWeighting
Segmentation
DataCollection
- IpSegmentation
- IpFunc
SurfaceInterpolation
GraphAlgorithms
ImageStatistics
ImageExtraction
PlanarFigure
QtWidgets
QtWidgetsExt
)
diff --git a/CMake/Whitelists/FlowBenchSegmentation.cmake b/CMake/Whitelists/FlowBenchSegmentation.cmake
index 1f2ac2ac73..da16f6fad7 100644
--- a/CMake/Whitelists/FlowBenchSegmentation.cmake
+++ b/CMake/Whitelists/FlowBenchSegmentation.cmake
@@ -1,57 +1,55 @@
set(enabled_modules
Core
CppMicroServices
DICOM
DICOMPM
DataTypesExt
AlgorithmsExt
DICOMQI
Multilabel
SceneSerializationBase
DICOMPMIO
DICOMImageIO
ContourModel
DICOMSegIO
LegacyGL
MapperExt
SceneSerialization
LegacyIO
IOExt
MultilabelIO
AppUtil
QtWidgets
QtWidgetsExt
Segmentation
SegmentationUI
PlanarFigure
Annotation
- IpSegmentation
- IpFunc
SurfaceInterpolation
GraphAlgorithms
ImageExtraction
ImageStatistics
)
set(enabled_plugins
org.blueberry.core.commands
org.blueberry.core.expressions
org.blueberry.core.runtime
org.blueberry.ui.qt
org.blueberry.ui.qt.help
org.blueberry.ui.qt.log
org.mitk.core.ext
org.mitk.core.services
org.mitk.gui.common
org.mitk.gui.qt.application
org.mitk.gui.qt.common
org.mitk.gui.qt.datamanager
org.mitk.gui.qt.flow.segmentation
org.mitk.gui.qt.flowapplication
org.mitk.gui.qt.imagenavigator
org.mitk.gui.qt.multilabelsegmentation
org.mitk.gui.qt.properties
org.mitk.gui.qt.segmentation
org.mitk.gui.qt.stdmultiwidgeteditor
org.mitk.planarfigure
)
diff --git a/Documentation/doxygen.conf.in b/Documentation/doxygen.conf.in
index 8a46babe1b..79bb026e21 100644
--- a/Documentation/doxygen.conf.in
+++ b/Documentation/doxygen.conf.in
@@ -1,2433 +1,2431 @@
# Doxyfile 1.8.8
# This file describes the settings to be used by the documentation system
# doxygen (www.doxygen.org) for a project.
#
# All text after a double hash (##) is considered a comment and is placed in
# front of the TAG it is preceding.
#
# All text after a single hash (#) is considered a comment and will be ignored.
# The format is:
# TAG = value [value, ...]
# For lists, items can also be appended using:
# TAG += value [value, ...]
# Values that contain spaces should be placed between quotes (\" \").
#---------------------------------------------------------------------------
# Project related configuration options
#---------------------------------------------------------------------------
# This tag specifies the encoding used for all characters in the config file
# that follow. The default is UTF-8 which is also the encoding used for all text
# before the first occurrence of this tag. Doxygen uses libiconv (or the iconv
# built into libc) for the transcoding. See http://www.gnu.org/software/libiconv
# for the list of possible encodings.
# The default value is: UTF-8.
DOXYFILE_ENCODING = UTF-8
# The PROJECT_NAME tag is a single word (or a sequence of words surrounded by
# double-quotes, unless you are using Doxywizard) that should identify the
# project for which the documentation is generated. This name is used in the
# title of most generated pages and in a few other places.
# The default value is: My Project.
PROJECT_NAME = "Medical Imaging Interaction Toolkit"
# The PROJECT_NUMBER tag can be used to enter a project or revision number. This
# could be handy for archiving the generated documentation or if some version
# control system is used.
PROJECT_NUMBER = @MITK_VERSION_STRING@
# Using the PROJECT_BRIEF tag one can provide an optional one line description
# for a project that appears at the top of each page and should give viewer a
# quick idea about the purpose of the project. Keep the description short.
PROJECT_BRIEF = "Medical Imaging Interaction Toolkit"
# With the PROJECT_LOGO tag one can specify an logo or icon that is included in
# the documentation. The maximum height of the logo should not exceed 55 pixels
# and the maximum width should not exceed 200 pixels. Doxygen will copy the logo
# to the output directory.
PROJECT_LOGO =
# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
# into which the generated documentation will be written. If a relative path is
# entered, it will be relative to the location where doxygen was started. If
# left blank the current directory will be used.
OUTPUT_DIRECTORY = "@MITK_DOXYGEN_OUTPUT_DIR@"
# If the CREATE_SUBDIRS tag is set to YES, then doxygen will create 4096 sub-
# directories (in 2 levels) under the output directory of each output format and
# will distribute the generated files over these directories. Enabling this
# option can be useful when feeding doxygen a huge amount of source files, where
# putting all generated files in the same directory would otherwise causes
# performance problems for the file system.
# The default value is: NO.
CREATE_SUBDIRS = NO
# If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII
# characters to appear in the names of generated files. If set to NO, non-ASCII
# characters will be escaped, for example _xE3_x81_x84 will be used for Unicode
# U+3044.
# The default value is: NO.
ALLOW_UNICODE_NAMES = NO
# The OUTPUT_LANGUAGE tag is used to specify the language in which all
# documentation generated by doxygen is written. Doxygen will use this
# information to generate all constant output in the proper language.
# Possible values are: Afrikaans, Arabic, Armenian, Brazilian, Catalan, Chinese,
# Chinese-Traditional, Croatian, Czech, Danish, Dutch, English (United States),
# Esperanto, Farsi (Persian), Finnish, French, German, Greek, Hungarian,
# Indonesian, Italian, Japanese, Japanese-en (Japanese with English messages),
# Korean, Korean-en (Korean with English messages), Latvian, Lithuanian,
# Macedonian, Norwegian, Persian (Farsi), Polish, Portuguese, Romanian, Russian,
# Serbian, Serbian-Cyrillic, Slovak, Slovene, Spanish, Swedish, Turkish,
# Ukrainian and Vietnamese.
# The default value is: English.
OUTPUT_LANGUAGE = English
# If the BRIEF_MEMBER_DESC tag is set to YES doxygen will include brief member
# descriptions after the members that are listed in the file and class
# documentation (similar to Javadoc). Set to NO to disable this.
# The default value is: YES.
BRIEF_MEMBER_DESC = YES
# If the REPEAT_BRIEF tag is set to YES doxygen will prepend the brief
# description of a member or function before the detailed description
#
# Note: If both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
# brief descriptions will be completely suppressed.
# The default value is: YES.
REPEAT_BRIEF = YES
# This tag implements a quasi-intelligent brief description abbreviator that is
# used to form the text in various listings. Each string in this list, if found
# as the leading text of the brief description, will be stripped from the text
# and the result, after processing the whole list, is used as the annotated
# text. Otherwise, the brief description is used as-is. If left blank, the
# following values are used ($name is automatically replaced with the name of
# the entity):The $name class, The $name widget, The $name file, is, provides,
# specifies, contains, represents, a, an and the.
ABBREVIATE_BRIEF =
# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then
# doxygen will generate a detailed section even if there is only a brief
# description.
# The default value is: NO.
ALWAYS_DETAILED_SEC = NO
# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all
# inherited members of a class in the documentation of that class as if those
# members were ordinary class members. Constructors, destructors and assignment
# operators of the base classes will not be shown.
# The default value is: NO.
INLINE_INHERITED_MEMB = NO
# If the FULL_PATH_NAMES tag is set to YES doxygen will prepend the full path
# before files name in the file list and in the header files. If set to NO the
# shortest path that makes the file name unique will be used
# The default value is: YES.
FULL_PATH_NAMES = NO
# The STRIP_FROM_PATH tag can be used to strip a user-defined part of the path.
# Stripping is only done if one of the specified strings matches the left-hand
# part of the path. The tag can be used to show relative paths in the file list.
# If left blank the directory from which doxygen is run is used as the path to
# strip.
#
# Note that you can specify absolute paths here, but also relative paths, which
# will be relative from the directory where doxygen is started.
# This tag requires that the tag FULL_PATH_NAMES is set to YES.
STRIP_FROM_PATH =
# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of the
# path mentioned in the documentation of a class, which tells the reader which
# header file to include in order to use a class. If left blank only the name of
# the header file containing the class definition is used. Otherwise one should
# specify the list of include paths that are normally passed to the compiler
# using the -I flag.
STRIP_FROM_INC_PATH =
# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter (but
# less readable) file names. This can be useful is your file systems doesn't
# support long names like on DOS, Mac, or CD-ROM.
# The default value is: NO.
SHORT_NAMES = NO
# If the JAVADOC_AUTOBRIEF tag is set to YES then doxygen will interpret the
# first line (until the first dot) of a Javadoc-style comment as the brief
# description. If set to NO, the Javadoc-style will behave just like regular Qt-
# style comments (thus requiring an explicit @brief command for a brief
# description.)
# The default value is: NO.
JAVADOC_AUTOBRIEF = NO
# If the QT_AUTOBRIEF tag is set to YES then doxygen will interpret the first
# line (until the first dot) of a Qt-style comment as the brief description. If
# set to NO, the Qt-style will behave just like regular Qt-style comments (thus
# requiring an explicit \brief command for a brief description.)
# The default value is: NO.
QT_AUTOBRIEF = NO
# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make doxygen treat a
# multi-line C++ special comment block (i.e. a block of //! or /// comments) as
# a brief description. This used to be the default behavior. The new default is
# to treat a multi-line C++ comment block as a detailed description. Set this
# tag to YES if you prefer the old behavior instead.
#
# Note that setting this tag to YES also means that rational rose comments are
# not recognized any more.
# The default value is: NO.
MULTILINE_CPP_IS_BRIEF = NO
# If the INHERIT_DOCS tag is set to YES then an undocumented member inherits the
# documentation from any documented member that it re-implements.
# The default value is: YES.
INHERIT_DOCS = YES
# If the SEPARATE_MEMBER_PAGES tag is set to YES, then doxygen will produce a
# new page for each member. If set to NO, the documentation of a member will be
# part of the file/class/namespace that contains it.
# The default value is: NO.
SEPARATE_MEMBER_PAGES = NO
# The TAB_SIZE tag can be used to set the number of spaces in a tab. Doxygen
# uses this value to replace tabs by spaces in code fragments.
# Minimum value: 1, maximum value: 16, default value: 4.
TAB_SIZE = 8
# This tag can be used to specify a number of aliases that act as commands in
# the documentation. An alias has the form:
# name=value
# For example adding
# "sideeffect=@par Side Effects:\n"
# will allow you to put the command \sideeffect (or @sideeffect) in the
# documentation, which will result in a user-defined paragraph with heading
# "Side Effects:". You can put \n's in the value part of an alias to insert
# newlines.
ALIASES = "FIXME=\par Fix Me's:\n" \
"BlueBerry=\if BLUEBERRY" \
"endBlueBerry=\endif" \
"bundlemainpage{1}=\page \1" \
"embmainpage{1}=\page \1" \
"github{2}=<a href=\"https://github.com/MITK/MITK/blob/master/\1\">\2</a>" \
"deprecatedSince{1}=\xrefitem deprecatedSince\1 \"\" \"Functions deprecated as of \1\" \deprecated (as of \1) " \
"minimumCMakeVersion=@MITK_CMAKE_MINIMUM_REQUIRED_VERSION@" \
"minimumQt5Version=@MITK_QT5_MINIMUM_VERSION@" \
"imageMacro{3}=\image html \1 \2 \n \image latex \1 \2 width=\3cm" \
"developersguidemainpage{1}=\page \1 " \
"usersguidemainpage{1}=\page \1 " \
"nondependentPluginLink{3}= \ref \1 \"\3\" "
# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C sources
# only. Doxygen will then generate output that is more tailored for C. For
# instance, some of the names that are used will be different. The list of all
# members will be omitted, etc.
# The default value is: NO.
OPTIMIZE_OUTPUT_FOR_C = NO
# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java or
# Python sources only. Doxygen will then generate output that is more tailored
# for that language. For instance, namespaces will be presented as packages,
# qualified scopes will look different, etc.
# The default value is: NO.
OPTIMIZE_OUTPUT_JAVA = NO
# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran
# sources. Doxygen will then generate output that is tailored for Fortran.
# The default value is: NO.
OPTIMIZE_FOR_FORTRAN = NO
# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL
# sources. Doxygen will then generate output that is tailored for VHDL.
# The default value is: NO.
OPTIMIZE_OUTPUT_VHDL = NO
# Doxygen selects the parser to use depending on the extension of the files it
# parses. With this tag you can assign which parser to use for a given
# extension. Doxygen has a built-in mapping, but you can override or extend it
# using this tag. The format is ext=language, where ext is a file extension, and
# language is one of the parsers supported by doxygen: IDL, Java, Javascript,
# C#, C, C++, D, PHP, Objective-C, Python, Fortran (fixed format Fortran:
# FortranFixed, free formatted Fortran: FortranFree, unknown formatted Fortran:
# Fortran. In the later case the parser tries to guess whether the code is fixed
# or free formatted code, this is the default for Fortran type files), VHDL. For
# instance to make doxygen treat .inc files as Fortran files (default is PHP),
# and .f files as C (default is Fortran), use: inc=Fortran f=C.
#
# Note For files without extension you can use no_extension as a placeholder.
#
# Note that for custom extensions you also need to set FILE_PATTERNS otherwise
# the files are not read by doxygen.
EXTENSION_MAPPING = cmake=c++
# If the MARKDOWN_SUPPORT tag is enabled then doxygen pre-processes all comments
# according to the Markdown format, which allows for more readable
# documentation. See http://daringfireball.net/projects/markdown/ for details.
# The output of markdown processing is further processed by doxygen, so you can
# mix doxygen, HTML, and XML commands with Markdown formatting. Disable only in
# case of backward compatibilities issues.
# The default value is: YES.
MARKDOWN_SUPPORT = YES
# When enabled doxygen tries to link words that correspond to documented
# classes, or namespaces to their corresponding documentation. Such a link can
# be prevented in individual cases by by putting a % sign in front of the word
# or globally by setting AUTOLINK_SUPPORT to NO.
# The default value is: YES.
AUTOLINK_SUPPORT = YES
# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
# to include (a tag file for) the STL sources as input, then you should set this
# tag to YES in order to let doxygen match functions declarations and
# definitions whose arguments contain STL classes (e.g. func(std::string);
# versus func(std::string) {}). This also make the inheritance and collaboration
# diagrams that involve STL classes more complete and accurate.
# The default value is: NO.
BUILTIN_STL_SUPPORT = YES
# If you use Microsoft's C++/CLI language, you should set this option to YES to
# enable parsing support.
# The default value is: NO.
CPP_CLI_SUPPORT = NO
# Set the SIP_SUPPORT tag to YES if your project consists of sip (see:
# http://www.riverbankcomputing.co.uk/software/sip/intro) sources only. Doxygen
# will parse them like normal C++ but will assume all classes use public instead
# of private inheritance when no explicit protection keyword is present.
# The default value is: NO.
SIP_SUPPORT = NO
# For Microsoft's IDL there are propget and propput attributes to indicate
# getter and setter methods for a property. Setting this option to YES will make
# doxygen to replace the get and set methods by a property in the documentation.
# This will only work if the methods are indeed getting or setting a simple
# type. If this is not the case, or you want to show the methods anyway, you
# should set this option to NO.
# The default value is: YES.
IDL_PROPERTY_SUPPORT = YES
# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
# tag is set to YES, then doxygen will reuse the documentation of the first
# member in the group (if any) for the other members of the group. By default
# all members of a group must be documented explicitly.
# The default value is: NO.
DISTRIBUTE_GROUP_DOC = YES
# Set the SUBGROUPING tag to YES to allow class member groups of the same type
# (for instance a group of public functions) to be put as a subgroup of that
# type (e.g. under the Public Functions section). Set it to NO to prevent
# subgrouping. Alternatively, this can be done per class using the
# \nosubgrouping command.
# The default value is: YES.
SUBGROUPING = YES
# When the INLINE_GROUPED_CLASSES tag is set to YES, classes, structs and unions
# are shown inside the group in which they are included (e.g. using \ingroup)
# instead of on a separate page (for HTML and Man pages) or section (for LaTeX
# and RTF).
#
# Note that this feature does not work in combination with
# SEPARATE_MEMBER_PAGES.
# The default value is: NO.
INLINE_GROUPED_CLASSES = NO
# When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and unions
# with only public data fields or simple typedef fields will be shown inline in
# the documentation of the scope in which they are defined (i.e. file,
# namespace, or group documentation), provided this scope is documented. If set
# to NO, structs, classes, and unions are shown on a separate page (for HTML and
# Man pages) or section (for LaTeX and RTF).
# The default value is: NO.
INLINE_SIMPLE_STRUCTS = NO
# When TYPEDEF_HIDES_STRUCT tag is enabled, a typedef of a struct, union, or
# enum is documented as struct, union, or enum with the name of the typedef. So
# typedef struct TypeS {} TypeT, will appear in the documentation as a struct
# with name TypeT. When disabled the typedef will appear as a member of a file,
# namespace, or class. And the struct will be named TypeS. This can typically be
# useful for C code in case the coding convention dictates that all compound
# types are typedef'ed and only the typedef is referenced, never the tag name.
# The default value is: NO.
TYPEDEF_HIDES_STRUCT = NO
# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This
# cache is used to resolve symbols given their name and scope. Since this can be
# an expensive process and often the same symbol appears multiple times in the
# code, doxygen keeps a cache of pre-resolved symbols. If the cache is too small
# doxygen will become slower. If the cache is too large, memory is wasted. The
# cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range
# is 0..9, the default is 0, corresponding to a cache size of 2^16=65536
# symbols. At the end of a run doxygen will report the cache usage and suggest
# the optimal cache size from a speed point of view.
# Minimum value: 0, maximum value: 9, default value: 0.
LOOKUP_CACHE_SIZE = 0
#---------------------------------------------------------------------------
# Build related configuration options
#---------------------------------------------------------------------------
# If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
# documentation are documented, even if no documentation was available. Private
# class members and static file members will be hidden unless the
# EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES.
# Note: This will also disable the warnings about undocumented members that are
# normally produced when WARNINGS is set to YES.
# The default value is: NO.
EXTRACT_ALL = YES
# If the EXTRACT_PRIVATE tag is set to YES all private members of a class will
# be included in the documentation.
# The default value is: NO.
EXTRACT_PRIVATE = NO
# If the EXTRACT_PACKAGE tag is set to YES all members with package or internal
# scope will be included in the documentation.
# The default value is: NO.
EXTRACT_PACKAGE = NO
# If the EXTRACT_STATIC tag is set to YES all static members of a file will be
# included in the documentation.
# The default value is: NO.
EXTRACT_STATIC = YES
# If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs) defined
# locally in source files will be included in the documentation. If set to NO
# only classes defined in header files are included. Does not have any effect
# for Java sources.
# The default value is: YES.
EXTRACT_LOCAL_CLASSES = @MITK_DOXYGEN_INTERNAL_DOCS@
# This flag is only useful for Objective-C code. When set to YES local methods,
# which are defined in the implementation section but not in the interface are
# included in the documentation. If set to NO only methods in the interface are
# included.
# The default value is: NO.
EXTRACT_LOCAL_METHODS = NO
# If this flag is set to YES, the members of anonymous namespaces will be
# extracted and appear in the documentation as a namespace called
# 'anonymous_namespace{file}', where file will be replaced with the base name of
# the file that contains the anonymous namespace. By default anonymous namespace
# are hidden.
# The default value is: NO.
EXTRACT_ANON_NSPACES = NO
# If the HIDE_UNDOC_MEMBERS tag is set to YES, doxygen will hide all
# undocumented members inside documented classes or files. If set to NO these
# members will be included in the various overviews, but no documentation
# section is generated. This option has no effect if EXTRACT_ALL is enabled.
# The default value is: NO.
HIDE_UNDOC_MEMBERS = NO
# If the HIDE_UNDOC_CLASSES tag is set to YES, doxygen will hide all
# undocumented classes that are normally visible in the class hierarchy. If set
# to NO these classes will be included in the various overviews. This option has
# no effect if EXTRACT_ALL is enabled.
# The default value is: NO.
HIDE_UNDOC_CLASSES = NO
# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, doxygen will hide all friend
# (class|struct|union) declarations. If set to NO these declarations will be
# included in the documentation.
# The default value is: NO.
HIDE_FRIEND_COMPOUNDS = @MITK_DOXYGEN_HIDE_FRIEND_COMPOUNDS@
# If the HIDE_IN_BODY_DOCS tag is set to YES, doxygen will hide any
# documentation blocks found inside the body of a function. If set to NO these
# blocks will be appended to the function's detailed documentation block.
# The default value is: NO.
HIDE_IN_BODY_DOCS = NO
# The INTERNAL_DOCS tag determines if documentation that is typed after a
# \internal command is included. If the tag is set to NO then the documentation
# will be excluded. Set it to YES to include the internal documentation.
# The default value is: NO.
INTERNAL_DOCS = @MITK_DOXYGEN_INTERNAL_DOCS@
# If the CASE_SENSE_NAMES tag is set to NO then doxygen will only generate file
# names in lower-case letters. If set to YES upper-case letters are also
# allowed. This is useful if you have classes or files whose names only differ
# in case and if your file system supports case sensitive file names. Windows
# and Mac users are advised to set this option to NO.
# The default value is: system dependent.
CASE_SENSE_NAMES = YES
# If the HIDE_SCOPE_NAMES tag is set to NO then doxygen will show members with
# their full class and namespace scopes in the documentation. If set to YES the
# scope will be hidden.
# The default value is: NO.
HIDE_SCOPE_NAMES = NO
# If the SHOW_INCLUDE_FILES tag is set to YES then doxygen will put a list of
# the files that are included by a file in the documentation of that file.
# The default value is: YES.
SHOW_INCLUDE_FILES = YES
# If the SHOW_GROUPED_MEMB_INC tag is set to YES then Doxygen will add for each
# grouped member an include statement to the documentation, telling the reader
# which file to include in order to use the member.
# The default value is: NO.
SHOW_GROUPED_MEMB_INC = NO
# If the FORCE_LOCAL_INCLUDES tag is set to YES then doxygen will list include
# files with double quotes in the documentation rather than with sharp brackets.
# The default value is: NO.
FORCE_LOCAL_INCLUDES = NO
# If the INLINE_INFO tag is set to YES then a tag [inline] is inserted in the
# documentation for inline members.
# The default value is: YES.
INLINE_INFO = YES
# If the SORT_MEMBER_DOCS tag is set to YES then doxygen will sort the
# (detailed) documentation of file and class members alphabetically by member
# name. If set to NO the members will appear in declaration order.
# The default value is: YES.
SORT_MEMBER_DOCS = YES
# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the brief
# descriptions of file, namespace and class members alphabetically by member
# name. If set to NO the members will appear in declaration order. Note that
# this will also influence the order of the classes in the class list.
# The default value is: NO.
SORT_BRIEF_DOCS = NO
# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen will sort the
# (brief and detailed) documentation of class members so that constructors and
# destructors are listed first. If set to NO the constructors will appear in the
# respective orders defined by SORT_BRIEF_DOCS and SORT_MEMBER_DOCS.
# Note: If SORT_BRIEF_DOCS is set to NO this option is ignored for sorting brief
# member documentation.
# Note: If SORT_MEMBER_DOCS is set to NO this option is ignored for sorting
# detailed member documentation.
# The default value is: NO.
SORT_MEMBERS_CTORS_1ST = NO
# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the hierarchy
# of group names into alphabetical order. If set to NO the group names will
# appear in their defined order.
# The default value is: NO.
SORT_GROUP_NAMES = NO
# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be sorted by
# fully-qualified names, including namespaces. If set to NO, the class list will
# be sorted only by class name, not including the namespace part.
# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES.
# Note: This option applies only to the class list, not to the alphabetical
# list.
# The default value is: NO.
SORT_BY_SCOPE_NAME = YES
# If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to do proper
# type resolution of all parameters of a function it will reject a match between
# the prototype and the implementation of a member function even if there is
# only one candidate or it is obvious which candidate to choose by doing a
# simple string match. By disabling STRICT_PROTO_MATCHING doxygen will still
# accept a match between prototype and implementation in such cases.
# The default value is: NO.
STRICT_PROTO_MATCHING = NO
# The GENERATE_TODOLIST tag can be used to enable ( YES) or disable ( NO) the
# todo list. This list is created by putting \todo commands in the
# documentation.
# The default value is: YES.
GENERATE_TODOLIST = @MITK_DOXYGEN_GENERATE_TODOLIST@
# The GENERATE_TESTLIST tag can be used to enable ( YES) or disable ( NO) the
# test list. This list is created by putting \test commands in the
# documentation.
# The default value is: YES.
GENERATE_TESTLIST = YES
# The GENERATE_BUGLIST tag can be used to enable ( YES) or disable ( NO) the bug
# list. This list is created by putting \bug commands in the documentation.
# The default value is: YES.
GENERATE_BUGLIST = @MITK_DOXYGEN_GENERATE_BUGLIST@
# The GENERATE_DEPRECATEDLIST tag can be used to enable ( YES) or disable ( NO)
# the deprecated list. This list is created by putting \deprecated commands in
# the documentation.
# The default value is: YES.
GENERATE_DEPRECATEDLIST= @MITK_DOXYGEN_GENERATE_DEPRECATEDLIST@
# The ENABLED_SECTIONS tag can be used to enable conditional documentation
# sections, marked by \if <section_label> ... \endif and \cond <section_label>
# ... \endcond blocks.
ENABLED_SECTIONS = @MITK_DOXYGEN_ENABLED_SECTIONS@
# The MAX_INITIALIZER_LINES tag determines the maximum number of lines that the
# initial value of a variable or macro / define can have for it to appear in the
# documentation. If the initializer consists of more lines than specified here
# it will be hidden. Use a value of 0 to hide initializers completely. The
# appearance of the value of individual variables and macros / defines can be
# controlled using \showinitializer or \hideinitializer command in the
# documentation regardless of this setting.
# Minimum value: 0, maximum value: 10000, default value: 30.
MAX_INITIALIZER_LINES = 0
# Set the SHOW_USED_FILES tag to NO to disable the list of files generated at
# the bottom of the documentation of classes and structs. If set to YES the list
# will mention the files that were used to generate the documentation.
# The default value is: YES.
SHOW_USED_FILES = YES
# Set the SHOW_FILES tag to NO to disable the generation of the Files page. This
# will remove the Files entry from the Quick Index and from the Folder Tree View
# (if specified).
# The default value is: YES.
SHOW_FILES = YES
# Set the SHOW_NAMESPACES tag to NO to disable the generation of the Namespaces
# page. This will remove the Namespaces entry from the Quick Index and from the
# Folder Tree View (if specified).
# The default value is: YES.
SHOW_NAMESPACES = YES
# The FILE_VERSION_FILTER tag can be used to specify a program or script that
# doxygen should invoke to get the current version for each file (typically from
# the version control system). Doxygen will invoke the program by executing (via
# popen()) the command command input-file, where command is the value of the
# FILE_VERSION_FILTER tag, and input-file is the name of an input file provided
# by doxygen. Whatever the program writes to standard output is used as the file
# version. For an example see the documentation.
FILE_VERSION_FILTER =
# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed
# by doxygen. The layout file controls the global structure of the generated
# output files in an output format independent way. To create the layout file
# that represents doxygen's defaults, run doxygen with the -l option. You can
# optionally specify a file name after the option, if omitted DoxygenLayout.xml
# will be used as the name of the layout file.
#
# Note that if you run doxygen from a directory containing a file called
# DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE
# tag is left empty.
LAYOUT_FILE = "@MITK_SOURCE_DIR@/Documentation/MITKDoxygenLayout.xml"
# The CITE_BIB_FILES tag can be used to specify one or more bib files containing
# the reference definitions. This must be a list of .bib files. The .bib
# extension is automatically appended if omitted. This requires the bibtex tool
# to be installed. See also http://en.wikipedia.org/wiki/BibTeX for more info.
# For LaTeX the style of the bibliography can be controlled using
# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the
# search path. See also \cite for info how to create references.
CITE_BIB_FILES =
#---------------------------------------------------------------------------
# Configuration options related to warning and progress messages
#---------------------------------------------------------------------------
# The QUIET tag can be used to turn on/off the messages that are generated to
# standard output by doxygen. If QUIET is set to YES this implies that the
# messages are off.
# The default value is: NO.
QUIET = YES
# The WARNINGS tag can be used to turn on/off the warning messages that are
# generated to standard error ( stderr) by doxygen. If WARNINGS is set to YES
# this implies that the warnings are on.
#
# Tip: Turn warnings on while writing the documentation.
# The default value is: YES.
WARNINGS = YES
# If the WARN_IF_UNDOCUMENTED tag is set to YES, then doxygen will generate
# warnings for undocumented members. If EXTRACT_ALL is set to YES then this flag
# will automatically be disabled.
# The default value is: YES.
WARN_IF_UNDOCUMENTED = YES
# If the WARN_IF_DOC_ERROR tag is set to YES, doxygen will generate warnings for
# potential errors in the documentation, such as not documenting some parameters
# in a documented function, or documenting parameters that don't exist or using
# markup commands wrongly.
# The default value is: YES.
WARN_IF_DOC_ERROR = YES
# This WARN_NO_PARAMDOC option can be enabled to get warnings for functions that
# are documented, but have no documentation for their parameters or return
# value. If set to NO doxygen will only warn about wrong or incomplete parameter
# documentation, but not about the absence of documentation.
# The default value is: NO.
WARN_NO_PARAMDOC = NO
# The WARN_FORMAT tag determines the format of the warning messages that doxygen
# can produce. The string should contain the $file, $line, and $text tags, which
# will be replaced by the file and line number from which the warning originated
# and the warning text. Optionally the format may contain $version, which will
# be replaced by the version of the file (if it could be obtained via
# FILE_VERSION_FILTER)
# The default value is: $file:$line: $text.
WARN_FORMAT = "$file:$line: $text"
# The WARN_LOGFILE tag can be used to specify a file to which warning and error
# messages should be written. If left blank the output is written to standard
# error (stderr).
WARN_LOGFILE =
#---------------------------------------------------------------------------
# Configuration options related to the input files
#---------------------------------------------------------------------------
# The INPUT tag is used to specify the files and/or directories that contain
# documented source files. You may enter file names like myfile.cpp or
# directories like /usr/src/myproject. Separate the files or directories with
# spaces.
# Note: If this tag is empty the current directory is searched.
INPUT = @MITK_SOURCE_DIR@ \
@MITK_BINARY_DIR@ \
@MITK_DOXYGEN_ADDITIONAL_INPUT_DIRS@
# This tag can be used to specify the character encoding of the source files
# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
# libiconv (or the iconv built into libc) for the transcoding. See the libiconv
# documentation (see: http://www.gnu.org/software/libiconv) for the list of
# possible encodings.
# The default value is: UTF-8.
INPUT_ENCODING = UTF-8
# If the value of the INPUT tag contains directories, you can use the
# FILE_PATTERNS tag to specify one or more wildcard patterns (like *.cpp and
# *.h) to filter out the source-files in the directories. If left blank the
# following patterns are tested:*.c, *.cc, *.cxx, *.cpp, *.c++, *.java, *.ii,
# *.ixx, *.ipp, *.i++, *.inl, *.idl, *.ddl, *.odl, *.h, *.hh, *.hxx, *.hpp,
# *.h++, *.cs, *.d, *.php, *.php4, *.php5, *.phtml, *.inc, *.m, *.markdown,
# *.md, *.mm, *.dox, *.py, *.f90, *.f, *.for, *.tcl, *.vhd, *.vhdl, *.ucf,
# *.qsf, *.as and *.js.
FILE_PATTERNS = *.h \
*.dox \
*.md
# The RECURSIVE tag can be used to specify whether or not subdirectories should
# be searched for input files as well.
# The default value is: NO.
RECURSIVE = YES
# The EXCLUDE tag can be used to specify files and/or directories that should be
# excluded from the INPUT source files. This way you can easily exclude a
# subdirectory from a directory tree whose root is specified with the INPUT tag.
#
# Note that relative paths are relative to the directory from which doxygen is
# run.
-EXCLUDE = "@MITK_SOURCE_DIR@/Utilities/IpFunc/" \
- "@MITK_SOURCE_DIR@/Utilities/IpSegmentation/" \
- "@MITK_SOURCE_DIR@/Utilities/qtsingleapplication/" \
+EXCLUDE = "@MITK_SOURCE_DIR@/Utilities/qtsingleapplication/" \
"@MITK_SOURCE_DIR@/Applications/PluginGenerator/" \
"@MITK_SOURCE_DIR@/Modules/CppMicroServices/core/doc/snippets/" \
"@MITK_SOURCE_DIR@/Modules/CppMicroServices/core/doc/doxygen/standalone/" \
"@MITK_SOURCE_DIR@/Modules/CppMicroServices/core/test/" \
"@MITK_SOURCE_DIR@/Modules/CppMicroServices/core/examples/" \
"@MITK_SOURCE_DIR@/Modules/CppMicroServices/core/src/util/jsoncpp.cpp" \
"@MITK_SOURCE_DIR@/Modules/CppMicroServices/third_party" \
"@MITK_SOURCE_DIR@/CMake/PackageDepends" \
"@MITK_SOURCE_DIR@/CMakeExternals" \
"@MITK_SOURCE_DIR@/Licenses" \
"@MITK_BINARY_DIR@/Documentation/Doxygen" \
"@MITK_BINARY_DIR@/bin/" \
"@MITK_BINARY_DIR@/PT/" \
"@MITK_BINARY_DIR@/GP/" \
"@MITK_BINARY_DIR@/_CPack_Packages/" \
@MITK_DOXYGEN_ADDITIONAL_EXCLUDE_DIRS@
# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
# directories that are symbolic links (a Unix file system feature) are excluded
# from the input.
# The default value is: NO.
EXCLUDE_SYMLINKS = NO
# If the value of the INPUT tag contains directories, you can use the
# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
# certain files from those directories.
#
# Note that the wildcards are matched against the file with absolute path, so to
# exclude all test directories for example use the pattern */test/*
EXCLUDE_PATTERNS = README* \
moc_* \
ui_* \
qrc_* \
wrap_* \
Register* \
*/files.cmake \
*/.git/* \
*_p.h \
*Private.* \
*/Internal/* \
*/internal/* \
*/Snippets/* \
*/snippets/* \
*/testing/* \
*/Testing/* \
*/test/* \
*/resource/* \
"@MITK_BINARY_DIR@/*.cmake" \
@MITK_DOXYGEN_EXCLUDE_PATTERNS@
# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
# (namespaces, classes, functions, etc.) that should be excluded from the
# output. The symbol name can be a fully qualified name, a word, or if the
# wildcard * is used, a substring. Examples: ANamespace, AClass,
# AClass::ANamespace, ANamespace::*Test
#
# Note that the wildcards are matched against the file with absolute path, so to
# exclude all test directories use the pattern */test/*
EXCLUDE_SYMBOLS =
# The EXAMPLE_PATH tag can be used to specify one or more files or directories
# that contain example code fragments that are included (see the \include
# command).
EXAMPLE_PATH = "@MITK_SOURCE_DIR@/Examples/" \
"@MITK_SOURCE_DIR@/Examples/Tutorial/" \
"@MITK_SOURCE_DIR@/Examples/Plugins/" \
"@MITK_SOURCE_DIR@/Examples/QtFreeRender/" \
"@MITK_SOURCE_DIR@/Modules/Core/" \
"@MITK_SOURCE_DIR@/Modules/CppMicroServices/core/doc/snippets/" \
"@MITK_SOURCE_DIR@/Modules/CppMicroServices/core/examples/" \
"@MITK_SOURCE_DIR@/Modules/CppMicroServices/" \
"@MITK_SOURCE_DIR@/Modules/OpenCL/Documentation/doxygen/snippets/" \
"@MITK_SOURCE_DIR@/Modules/IGT/Tutorial/" \
"@MITK_SOURCE_DIR@/Plugins/org.mitk.gui.common/src/" \
"@MITK_SOURCE_DIR@/Plugins/org.mitk.gui.qt.igtexamples/" \
"@MITK_SOURCE_DIR@/Plugins/org.mitk.gui.qt.igttracking/"
# If the value of the EXAMPLE_PATH tag contains directories, you can use the
# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp and
# *.h) to filter out the source-files in the directories. If left blank all
# files are included.
EXAMPLE_PATTERNS =
# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be
# searched for input files to be used with the \include or \dontinclude commands
# irrespective of the value of the RECURSIVE tag.
# The default value is: NO.
EXAMPLE_RECURSIVE = YES
# The IMAGE_PATH tag can be used to specify one or more files or directories
# that contain images that are to be included in the documentation (see the
# \image command).
IMAGE_PATH = "@MITK_SOURCE_DIR@/Documentation/Doxygen/" \
"@MITK_SOURCE_DIR@"
# The INPUT_FILTER tag can be used to specify a program that doxygen should
# invoke to filter for each input file. Doxygen will invoke the filter program
# by executing (via popen()) the command:
#
# <filter> <input-file>
#
# where <filter> is the value of the INPUT_FILTER tag, and <input-file> is the
# name of an input file. Doxygen will then use the output that the filter
# program writes to standard output. If FILTER_PATTERNS is specified, this tag
# will be ignored.
#
# Note that the filter must not add or remove lines; it is applied before the
# code is scanned, but not when the output code is generated. If lines are added
# or removed, the anchors will not be placed correctly.
INPUT_FILTER =
# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern
# basis. Doxygen will compare the file name with each pattern and apply the
# filter if there is a match. The filters are a list of the form: pattern=filter
# (like *.cpp=my_cpp_filter). See INPUT_FILTER for further information on how
# filters are used. If the FILTER_PATTERNS tag is empty or if none of the
# patterns match the file name, INPUT_FILTER is applied.
FILTER_PATTERNS = *.cmake=@CMakeDoxygenFilter_EXECUTABLE@
# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using
# INPUT_FILTER ) will also be used to filter the input files that are used for
# producing the source files to browse (i.e. when SOURCE_BROWSER is set to YES).
# The default value is: NO.
FILTER_SOURCE_FILES = NO
# The FILTER_SOURCE_PATTERNS tag can be used to specify source filters per file
# pattern. A pattern will override the setting for FILTER_PATTERN (if any) and
# it is also possible to disable source filtering for a specific pattern using
# *.ext= (so without naming a filter).
# This tag requires that the tag FILTER_SOURCE_FILES is set to YES.
FILTER_SOURCE_PATTERNS =
# If the USE_MDFILE_AS_MAINPAGE tag refers to the name of a markdown file that
# is part of the input, its contents will be placed on the main page
# (index.html). This can be useful if you have a project on for instance GitHub
# and want to reuse the introduction page also for the doxygen output.
USE_MDFILE_AS_MAINPAGE =
#---------------------------------------------------------------------------
# Configuration options related to source browsing
#---------------------------------------------------------------------------
# If the SOURCE_BROWSER tag is set to YES then a list of source files will be
# generated. Documented entities will be cross-referenced with these sources.
#
# Note: To get rid of all source code in the generated output, make sure that
# also VERBATIM_HEADERS is set to NO.
# The default value is: NO.
SOURCE_BROWSER = YES
# Setting the INLINE_SOURCES tag to YES will include the body of functions,
# classes and enums directly into the documentation.
# The default value is: NO.
INLINE_SOURCES = NO
# Setting the STRIP_CODE_COMMENTS tag to YES will instruct doxygen to hide any
# special comment blocks from generated source code fragments. Normal C, C++ and
# Fortran comments will always remain visible.
# The default value is: YES.
STRIP_CODE_COMMENTS = YES
# If the REFERENCED_BY_RELATION tag is set to YES then for each documented
# function all documented functions referencing it will be listed.
# The default value is: NO.
REFERENCED_BY_RELATION = YES
# If the REFERENCES_RELATION tag is set to YES then for each documented function
# all documented entities called/used by that function will be listed.
# The default value is: NO.
REFERENCES_RELATION = YES
# If the REFERENCES_LINK_SOURCE tag is set to YES and SOURCE_BROWSER tag is set
# to YES, then the hyperlinks from functions in REFERENCES_RELATION and
# REFERENCED_BY_RELATION lists will link to the source code. Otherwise they will
# link to the documentation.
# The default value is: YES.
REFERENCES_LINK_SOURCE = YES
# If SOURCE_TOOLTIPS is enabled (the default) then hovering a hyperlink in the
# source code will show a tooltip with additional information such as prototype,
# brief description and links to the definition and documentation. Since this
# will make the HTML file larger and loading of large files a bit slower, you
# can opt to disable this feature.
# The default value is: YES.
# This tag requires that the tag SOURCE_BROWSER is set to YES.
SOURCE_TOOLTIPS = YES
# If the USE_HTAGS tag is set to YES then the references to source code will
# point to the HTML generated by the htags(1) tool instead of doxygen built-in
# source browser. The htags tool is part of GNU's global source tagging system
# (see http://www.gnu.org/software/global/global.html). You will need version
# 4.8.6 or higher.
#
# To use it do the following:
# - Install the latest version of global
# - Enable SOURCE_BROWSER and USE_HTAGS in the config file
# - Make sure the INPUT points to the root of the source tree
# - Run doxygen as normal
#
# Doxygen will invoke htags (and that will in turn invoke gtags), so these
# tools must be available from the command line (i.e. in the search path).
#
# The result: instead of the source browser generated by doxygen, the links to
# source code will now point to the output of htags.
# The default value is: NO.
# This tag requires that the tag SOURCE_BROWSER is set to YES.
USE_HTAGS = NO
# If the VERBATIM_HEADERS tag is set the YES then doxygen will generate a
# verbatim copy of the header file for each class for which an include is
# specified. Set to NO to disable this.
# See also: Section \class.
# The default value is: YES.
VERBATIM_HEADERS = YES
#---------------------------------------------------------------------------
# Configuration options related to the alphabetical class index
#---------------------------------------------------------------------------
# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index of all
# compounds will be generated. Enable this if the project contains a lot of
# classes, structs, unions or interfaces.
# The default value is: YES.
ALPHABETICAL_INDEX = YES
# The COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns in
# which the alphabetical index list will be split.
# Minimum value: 1, maximum value: 20, default value: 5.
# This tag requires that the tag ALPHABETICAL_INDEX is set to YES.
COLS_IN_ALPHA_INDEX = 3
# In case all classes in a project start with a common prefix, all classes will
# be put under the same header in the alphabetical index. The IGNORE_PREFIX tag
# can be used to specify a prefix (or a list of prefixes) that should be ignored
# while generating the index headers.
# This tag requires that the tag ALPHABETICAL_INDEX is set to YES.
IGNORE_PREFIX =
#---------------------------------------------------------------------------
# Configuration options related to the HTML output
#---------------------------------------------------------------------------
# If the GENERATE_HTML tag is set to YES doxygen will generate HTML output
# The default value is: YES.
GENERATE_HTML = YES
# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. If a
# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
# it.
# The default directory is: html.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_OUTPUT = html
# The HTML_FILE_EXTENSION tag can be used to specify the file extension for each
# generated HTML page (for example: .htm, .php, .asp).
# The default value is: .html.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_FILE_EXTENSION = .html
# The HTML_HEADER tag can be used to specify a user-defined HTML header file for
# each generated HTML page. If the tag is left blank doxygen will generate a
# standard header.
#
# To get valid HTML the header file that includes any scripts and style sheets
# that doxygen needs, which is dependent on the configuration options used (e.g.
# the setting GENERATE_TREEVIEW). It is highly recommended to start with a
# default header using
# doxygen -w html new_header.html new_footer.html new_stylesheet.css
# YourConfigFile
# and then modify the file new_header.html. See also section "Doxygen usage"
# for information on how to generate the default header that doxygen normally
# uses.
# Note: The header is subject to change so you typically have to regenerate the
# default header when upgrading to a newer version of doxygen. For a description
# of the possible markers and block names see the documentation.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_HEADER =
# The HTML_FOOTER tag can be used to specify a user-defined HTML footer for each
# generated HTML page. If the tag is left blank doxygen will generate a standard
# footer. See HTML_HEADER for more information on how to generate a default
# footer and what special commands can be used inside the footer. See also
# section "Doxygen usage" for information on how to generate the default footer
# that doxygen normally uses.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_FOOTER =
# The HTML_STYLESHEET tag can be used to specify a user-defined cascading style
# sheet that is used by each HTML page. It can be used to fine-tune the look of
# the HTML output. If left blank doxygen will generate a default style sheet.
# See also section "Doxygen usage" for information on how to generate the style
# sheet that doxygen normally uses.
# Note: It is recommended to use HTML_EXTRA_STYLESHEET instead of this tag, as
# it is more robust and this tag (HTML_STYLESHEET) will in the future become
# obsolete.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_STYLESHEET =
# The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined
# cascading style sheets that are included after the standard style sheets
# created by doxygen. Using this option one can overrule certain style aspects.
# This is preferred over using HTML_STYLESHEET since it does not replace the
# standard style sheet and is therefor more robust against future updates.
# Doxygen will copy the style sheet files to the output directory.
# Note: The order of the extra stylesheet files is of importance (e.g. the last
# stylesheet in the list overrules the setting of the previous ones in the
# list). For an example see the documentation.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_EXTRA_STYLESHEET = @MITK_DOXYGEN_STYLESHEET@
# The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
# other source files which should be copied to the HTML output directory. Note
# that these files will be copied to the base HTML output directory. Use the
# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
# files. In the HTML_STYLESHEET file, use the file name only. Also note that the
# files will be copied as-is; there are no commands or markers available.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_EXTRA_FILES = "@MITK_SOURCE_DIR@/Documentation/Doxygen/mitkLogo.jpg"
# The HTML_COLORSTYLE_HUE tag controls the color of the HTML output. Doxygen
# will adjust the colors in the stylesheet and background images according to
# this color. Hue is specified as an angle on a colorwheel, see
# http://en.wikipedia.org/wiki/Hue for more information. For instance the value
# 0 represents red, 60 is yellow, 120 is green, 180 is cyan, 240 is blue, 300
# purple, and 360 is red again.
# Minimum value: 0, maximum value: 359, default value: 220.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_COLORSTYLE_HUE = 220
# The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of the colors
# in the HTML output. For a value of 0 the output will use grayscales only. A
# value of 255 will produce the most vivid colors.
# Minimum value: 0, maximum value: 255, default value: 100.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_COLORSTYLE_SAT = 100
# The HTML_COLORSTYLE_GAMMA tag controls the gamma correction applied to the
# luminance component of the colors in the HTML output. Values below 100
# gradually make the output lighter, whereas values above 100 make the output
# darker. The value divided by 100 is the actual gamma applied, so 80 represents
# a gamma of 0.8, The value 220 represents a gamma of 2.2, and 100 does not
# change the gamma.
# Minimum value: 40, maximum value: 240, default value: 80.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_COLORSTYLE_GAMMA = 80
# If the HTML_TIMESTAMP tag is set to YES then the footer of each generated HTML
# page will contain the date and time when the page was generated. Setting this
# to NO can help when comparing the output of multiple runs.
# The default value is: YES.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_TIMESTAMP = YES
# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
# documentation will contain sections that can be hidden and shown after the
# page has loaded.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_DYNAMIC_SECTIONS = @MITK_DOXYGEN_HTML_DYNAMIC_SECTIONS@
# With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries
# shown in the various tree structured indices initially; the user can expand
# and collapse entries dynamically later on. Doxygen will expand the tree to
# such a level that at most the specified number of entries are visible (unless
# a fully collapsed tree already exceeds this amount). So setting the number of
# entries 1 will produce a full collapsed tree by default. 0 is a special value
# representing an infinite number of entries and will result in a full expanded
# tree by default.
# Minimum value: 0, maximum value: 9999, default value: 100.
# This tag requires that the tag GENERATE_HTML is set to YES.
HTML_INDEX_NUM_ENTRIES = 100
# If the GENERATE_DOCSET tag is set to YES, additional index files will be
# generated that can be used as input for Apple's Xcode 3 integrated development
# environment (see: http://developer.apple.com/tools/xcode/), introduced with
# OSX 10.5 (Leopard). To create a documentation set, doxygen will generate a
# Makefile in the HTML output directory. Running make will produce the docset in
# that directory and running make install will install the docset in
# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find it at
# startup. See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html
# for more information.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTML is set to YES.
GENERATE_DOCSET = NO
# This tag determines the name of the docset feed. A documentation feed provides
# an umbrella under which multiple documentation sets from a single provider
# (such as a company or product suite) can be grouped.
# The default value is: Doxygen generated docs.
# This tag requires that the tag GENERATE_DOCSET is set to YES.
DOCSET_FEEDNAME = "Doxygen generated docs"
# This tag specifies a string that should uniquely identify the documentation
# set bundle. This should be a reverse domain-name style string, e.g.
# com.mycompany.MyDocSet. Doxygen will append .docset to the name.
# The default value is: org.doxygen.Project.
# This tag requires that the tag GENERATE_DOCSET is set to YES.
DOCSET_BUNDLE_ID = org.doxygen.Project
# The DOCSET_PUBLISHER_ID tag specifies a string that should uniquely identify
# the documentation publisher. This should be a reverse domain-name style
# string, e.g. com.mycompany.MyDocSet.documentation.
# The default value is: org.doxygen.Publisher.
# This tag requires that the tag GENERATE_DOCSET is set to YES.
DOCSET_PUBLISHER_ID = org.doxygen.Publisher
# The DOCSET_PUBLISHER_NAME tag identifies the documentation publisher.
# The default value is: Publisher.
# This tag requires that the tag GENERATE_DOCSET is set to YES.
DOCSET_PUBLISHER_NAME = Publisher
# If the GENERATE_HTMLHELP tag is set to YES then doxygen generates three
# additional HTML index files: index.hhp, index.hhc, and index.hhk. The
# index.hhp is a project file that can be read by Microsoft's HTML Help Workshop
# (see: http://www.microsoft.com/en-us/download/details.aspx?id=21138) on
# Windows.
#
# The HTML Help Workshop contains a compiler that can convert all HTML output
# generated by doxygen into a single compiled HTML file (.chm). Compiled HTML
# files are now used as the Windows 98 help format, and will replace the old
# Windows help format (.hlp) on all Windows platforms in the future. Compressed
# HTML files also contain an index, a table of contents, and you can search for
# words in the documentation. The HTML workshop also contains a viewer for
# compressed HTML files.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTML is set to YES.
GENERATE_HTMLHELP = NO
# The CHM_FILE tag can be used to specify the file name of the resulting .chm
# file. You can add a path in front of the file if the result should not be
# written to the html output directory.
# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
CHM_FILE =
# The HHC_LOCATION tag can be used to specify the location (absolute path
# including file name) of the HTML help compiler ( hhc.exe). If non-empty
# doxygen will try to run the HTML help compiler on the generated index.hhp.
# The file has to be specified with full path.
# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
HHC_LOCATION =
# The GENERATE_CHI flag controls if a separate .chi index file is generated (
# YES) or that it should be included in the master .chm file ( NO).
# The default value is: NO.
# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
GENERATE_CHI = NO
# The CHM_INDEX_ENCODING is used to encode HtmlHelp index ( hhk), content ( hhc)
# and project file content.
# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
CHM_INDEX_ENCODING =
# The BINARY_TOC flag controls whether a binary table of contents is generated (
# YES) or a normal table of contents ( NO) in the .chm file. Furthermore it
# enables the Previous and Next buttons.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
BINARY_TOC = NO
# The TOC_EXPAND flag can be set to YES to add extra items for group members to
# the table of contents of the HTML help documentation and to the tree view.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTMLHELP is set to YES.
TOC_EXPAND = NO
# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and
# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated that
# can be used as input for Qt's qhelpgenerator to generate a Qt Compressed Help
# (.qch) of the generated HTML documentation.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTML is set to YES.
GENERATE_QHP = @MITK_DOXYGEN_GENERATE_QHP@
# If the QHG_LOCATION tag is specified, the QCH_FILE tag can be used to specify
# the file name of the resulting .qch file. The path specified is relative to
# the HTML output folder.
# This tag requires that the tag GENERATE_QHP is set to YES.
QCH_FILE = @MITK_DOXYGEN_QCH_FILE@
# The QHP_NAMESPACE tag specifies the namespace to use when generating Qt Help
# Project output. For more information please see Qt Help Project / Namespace
# (see: http://qt-project.org/doc/qt-4.8/qthelpproject.html#namespace).
# The default value is: org.doxygen.Project.
# This tag requires that the tag GENERATE_QHP is set to YES.
QHP_NAMESPACE = "org.mitk"
# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating Qt
# Help Project output. For more information please see Qt Help Project / Virtual
# Folders (see: http://qt-project.org/doc/qt-4.8/qthelpproject.html#virtual-
# folders).
# The default value is: doc.
# This tag requires that the tag GENERATE_QHP is set to YES.
QHP_VIRTUAL_FOLDER = MITK
# If the QHP_CUST_FILTER_NAME tag is set, it specifies the name of a custom
# filter to add. For more information please see Qt Help Project / Custom
# Filters (see: http://qt-project.org/doc/qt-4.8/qthelpproject.html#custom-
# filters).
# This tag requires that the tag GENERATE_QHP is set to YES.
QHP_CUST_FILTER_NAME =
# The QHP_CUST_FILTER_ATTRS tag specifies the list of the attributes of the
# custom filter to add. For more information please see Qt Help Project / Custom
# Filters (see: http://qt-project.org/doc/qt-4.8/qthelpproject.html#custom-
# filters).
# This tag requires that the tag GENERATE_QHP is set to YES.
QHP_CUST_FILTER_ATTRS =
# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this
# project's filter section matches. Qt Help Project / Filter Attributes (see:
# http://qt-project.org/doc/qt-4.8/qthelpproject.html#filter-attributes).
# This tag requires that the tag GENERATE_QHP is set to YES.
QHP_SECT_FILTER_ATTRS =
# The QHG_LOCATION tag can be used to specify the location of Qt's
# qhelpgenerator. If non-empty doxygen will try to run qhelpgenerator on the
# generated .qhp file.
# This tag requires that the tag GENERATE_QHP is set to YES.
QHG_LOCATION = @QT_HELPGENERATOR_EXECUTABLE@
# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files will be
# generated, together with the HTML files, they form an Eclipse help plugin. To
# install this plugin and make it available under the help contents menu in
# Eclipse, the contents of the directory containing the HTML and XML files needs
# to be copied into the plugins directory of eclipse. The name of the directory
# within the plugins directory should be the same as the ECLIPSE_DOC_ID value.
# After copying Eclipse needs to be restarted before the help appears.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTML is set to YES.
GENERATE_ECLIPSEHELP = NO
# A unique identifier for the Eclipse help plugin. When installing the plugin
# the directory name containing the HTML and XML files should also have this
# name. Each documentation set should have its own identifier.
# The default value is: org.doxygen.Project.
# This tag requires that the tag GENERATE_ECLIPSEHELP is set to YES.
ECLIPSE_DOC_ID = org.doxygen.Project
# If you want full control over the layout of the generated HTML pages it might
# be necessary to disable the index and replace it with your own. The
# DISABLE_INDEX tag can be used to turn on/off the condensed index (tabs) at top
# of each HTML page. A value of NO enables the index and the value YES disables
# it. Since the tabs in the index contain the same information as the navigation
# tree, you can set this option to YES if you also set GENERATE_TREEVIEW to YES.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTML is set to YES.
DISABLE_INDEX = NO
# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
# structure should be generated to display hierarchical information. If the tag
# value is set to YES, a side panel will be generated containing a tree-like
# index structure (just like the one that is generated for HTML Help). For this
# to work a browser that supports JavaScript, DHTML, CSS and frames is required
# (i.e. any modern browser). Windows users are probably better off using the
# HTML help feature. Via custom stylesheets (see HTML_EXTRA_STYLESHEET) one can
# further fine-tune the look of the index. As an example, the default style
# sheet generated by doxygen has an example that shows how to put an image at
# the root of the tree instead of the PROJECT_NAME. Since the tree basically has
# the same information as the tab index, you could consider setting
# DISABLE_INDEX to YES when enabling this option.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTML is set to YES.
GENERATE_TREEVIEW = YES
# The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values that
# doxygen will group on one line in the generated HTML documentation.
#
# Note that a value of 0 will completely suppress the enum values from appearing
# in the overview section.
# Minimum value: 0, maximum value: 20, default value: 4.
# This tag requires that the tag GENERATE_HTML is set to YES.
ENUM_VALUES_PER_LINE = 4
# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be used
# to set the initial width (in pixels) of the frame in which the tree is shown.
# Minimum value: 0, maximum value: 1500, default value: 250.
# This tag requires that the tag GENERATE_HTML is set to YES.
TREEVIEW_WIDTH = 300
# When the EXT_LINKS_IN_WINDOW option is set to YES doxygen will open links to
# external symbols imported via tag files in a separate window.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTML is set to YES.
EXT_LINKS_IN_WINDOW = NO
# Use this tag to change the font size of LaTeX formulas included as images in
# the HTML documentation. When you change the font size after a successful
# doxygen run you need to manually remove any form_*.png images from the HTML
# output directory to force them to be regenerated.
# Minimum value: 8, maximum value: 50, default value: 10.
# This tag requires that the tag GENERATE_HTML is set to YES.
FORMULA_FONTSIZE = 10
# Use the FORMULA_TRANPARENT tag to determine whether or not the images
# generated for formulas are transparent PNGs. Transparent PNGs are not
# supported properly for IE 6.0, but are supported on all modern browsers.
#
# Note that when changing this option you need to delete any form_*.png files in
# the HTML output directory before the changes have effect.
# The default value is: YES.
# This tag requires that the tag GENERATE_HTML is set to YES.
FORMULA_TRANSPARENT = YES
# Enable the USE_MATHJAX option to render LaTeX formulas using MathJax (see
# http://www.mathjax.org) which uses client side Javascript for the rendering
# instead of using prerendered bitmaps. Use this if you do not have LaTeX
# installed or if you want to formulas look prettier in the HTML output. When
# enabled you may also need to install MathJax separately and configure the path
# to it using the MATHJAX_RELPATH option.
# The default value is: NO.
# This tag requires that the tag GENERATE_HTML is set to YES.
USE_MATHJAX = YES
# When MathJax is enabled you can set the default output format to be used for
# the MathJax output. See the MathJax site (see:
# http://docs.mathjax.org/en/latest/output.html) for more details.
# Possible values are: HTML-CSS (which is slower, but has the best
# compatibility), NativeMML (i.e. MathML) and SVG.
# The default value is: HTML-CSS.
# This tag requires that the tag USE_MATHJAX is set to YES.
MATHJAX_FORMAT = HTML-CSS
# When MathJax is enabled you need to specify the location relative to the HTML
# output directory using the MATHJAX_RELPATH option. The destination directory
# should contain the MathJax.js script. For instance, if the mathjax directory
# is located at the same level as the HTML output directory, then
# MATHJAX_RELPATH should be ../mathjax. The default value points to the MathJax
# Content Delivery Network so you can quickly see the result without installing
# MathJax. However, it is strongly recommended to install a local copy of
# MathJax from http://www.mathjax.org before deployment.
# The default value is: http://cdn.mathjax.org/mathjax/latest.
# This tag requires that the tag USE_MATHJAX is set to YES.
MATHJAX_RELPATH = http://www.mathjax.org/mathjax
# The MATHJAX_EXTENSIONS tag can be used to specify one or more MathJax
# extension names that should be enabled during MathJax rendering. For example
# MATHJAX_EXTENSIONS = TeX/AMSmath TeX/AMSsymbols
# This tag requires that the tag USE_MATHJAX is set to YES.
MATHJAX_EXTENSIONS =
# The MATHJAX_CODEFILE tag can be used to specify a file with javascript pieces
# of code that will be used on startup of the MathJax code. See the MathJax site
# (see: http://docs.mathjax.org/en/latest/output.html) for more details. For an
# example see the documentation.
# This tag requires that the tag USE_MATHJAX is set to YES.
MATHJAX_CODEFILE =
# When the SEARCHENGINE tag is enabled doxygen will generate a search box for
# the HTML output. The underlying search engine uses javascript and DHTML and
# should work on any modern browser. Note that when using HTML help
# (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets (GENERATE_DOCSET)
# there is already a search function so this one should typically be disabled.
# For large projects the javascript based search engine can be slow, then
# enabling SERVER_BASED_SEARCH may provide a better solution. It is possible to
# search using the keyboard; to jump to the search box use <access key> + S
# (what the <access key> is depends on the OS and browser, but it is typically
# <CTRL>, <ALT>/<option>, or both). Inside the search box use the <cursor down
# key> to jump into the search results window, the results can be navigated
# using the <cursor keys>. Press <Enter> to select an item or <escape> to cancel
# the search. The filter options can be selected when the cursor is inside the
# search box by pressing <Shift>+<cursor down>. Also here use the <cursor keys>
# to select a filter and <Enter> or <escape> to activate or cancel the filter
# option.
# The default value is: YES.
# This tag requires that the tag GENERATE_HTML is set to YES.
SEARCHENGINE = YES
# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
# implemented using a web server instead of a web client using Javascript. There
# are two flavors of web server based searching depending on the EXTERNAL_SEARCH
# setting. When disabled, doxygen will generate a PHP script for searching and
# an index file used by the script. When EXTERNAL_SEARCH is enabled the indexing
# and searching needs to be provided by external tools. See the section
# "External Indexing and Searching" for details.
# The default value is: NO.
# This tag requires that the tag SEARCHENGINE is set to YES.
SERVER_BASED_SEARCH = NO
# When EXTERNAL_SEARCH tag is enabled doxygen will no longer generate the PHP
# script for searching. Instead the search results are written to an XML file
# which needs to be processed by an external indexer. Doxygen will invoke an
# external search engine pointed to by the SEARCHENGINE_URL option to obtain the
# search results.
#
# Doxygen ships with an example indexer ( doxyindexer) and search engine
# (doxysearch.cgi) which are based on the open source search engine library
# Xapian (see: http://xapian.org/).
#
# See the section "External Indexing and Searching" for details.
# The default value is: NO.
# This tag requires that the tag SEARCHENGINE is set to YES.
EXTERNAL_SEARCH = NO
# The SEARCHENGINE_URL should point to a search engine hosted by a web server
# which will return the search results when EXTERNAL_SEARCH is enabled.
#
# Doxygen ships with an example indexer ( doxyindexer) and search engine
# (doxysearch.cgi) which are based on the open source search engine library
# Xapian (see: http://xapian.org/). See the section "External Indexing and
# Searching" for details.
# This tag requires that the tag SEARCHENGINE is set to YES.
SEARCHENGINE_URL =
# When SERVER_BASED_SEARCH and EXTERNAL_SEARCH are both enabled the unindexed
# search data is written to a file for indexing by an external tool. With the
# SEARCHDATA_FILE tag the name of this file can be specified.
# The default file is: searchdata.xml.
# This tag requires that the tag SEARCHENGINE is set to YES.
SEARCHDATA_FILE = searchdata.xml
# When SERVER_BASED_SEARCH and EXTERNAL_SEARCH are both enabled the
# EXTERNAL_SEARCH_ID tag can be used as an identifier for the project. This is
# useful in combination with EXTRA_SEARCH_MAPPINGS to search through multiple
# projects and redirect the results back to the right project.
# This tag requires that the tag SEARCHENGINE is set to YES.
EXTERNAL_SEARCH_ID =
# The EXTRA_SEARCH_MAPPINGS tag can be used to enable searching through doxygen
# projects other than the one defined by this configuration file, but that are
# all added to the same external search index. Each project needs to have a
# unique id set via EXTERNAL_SEARCH_ID. The search mapping then maps the id of
# to a relative location where the documentation can be found. The format is:
# EXTRA_SEARCH_MAPPINGS = tagname1=loc1 tagname2=loc2 ...
# This tag requires that the tag SEARCHENGINE is set to YES.
EXTRA_SEARCH_MAPPINGS =
#---------------------------------------------------------------------------
# Configuration options related to the LaTeX output
#---------------------------------------------------------------------------
# If the GENERATE_LATEX tag is set to YES doxygen will generate LaTeX output.
# The default value is: YES.
GENERATE_LATEX = NO
# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. If a
# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
# it.
# The default directory is: latex.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_OUTPUT = latex
# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
# invoked.
#
# Note that when enabling USE_PDFLATEX this option is only used for generating
# bitmaps for formulas in the HTML output, but not in the Makefile that is
# written to the output directory.
# The default file is: latex.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_CMD_NAME = latex
# The MAKEINDEX_CMD_NAME tag can be used to specify the command name to generate
# index for LaTeX.
# The default file is: makeindex.
# This tag requires that the tag GENERATE_LATEX is set to YES.
MAKEINDEX_CMD_NAME = makeindex
# If the COMPACT_LATEX tag is set to YES doxygen generates more compact LaTeX
# documents. This may be useful for small projects and may help to save some
# trees in general.
# The default value is: NO.
# This tag requires that the tag GENERATE_LATEX is set to YES.
COMPACT_LATEX = NO
# The PAPER_TYPE tag can be used to set the paper type that is used by the
# printer.
# Possible values are: a4 (210 x 297 mm), letter (8.5 x 11 inches), legal (8.5 x
# 14 inches) and executive (7.25 x 10.5 inches).
# The default value is: a4.
# This tag requires that the tag GENERATE_LATEX is set to YES.
PAPER_TYPE = a4
# The EXTRA_PACKAGES tag can be used to specify one or more LaTeX package names
# that should be included in the LaTeX output. To get the times font for
# instance you can specify
# EXTRA_PACKAGES=times
# If left blank no extra packages will be included.
# This tag requires that the tag GENERATE_LATEX is set to YES.
EXTRA_PACKAGES = amssymb
# The LATEX_HEADER tag can be used to specify a personal LaTeX header for the
# generated LaTeX document. The header should contain everything until the first
# chapter. If it is left blank doxygen will generate a standard header. See
# section "Doxygen usage" for information on how to let doxygen write the
# default header to a separate file.
#
# Note: Only use a user-defined header if you know what you are doing! The
# following commands have a special meaning inside the header: $title,
# $datetime, $date, $doxygenversion, $projectname, $projectnumber,
# $projectbrief, $projectlogo. Doxygen will replace $title with the empy string,
# for the replacement values of the other commands the user is refered to
# HTML_HEADER.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_HEADER =
# The LATEX_FOOTER tag can be used to specify a personal LaTeX footer for the
# generated LaTeX document. The footer should contain everything after the last
# chapter. If it is left blank doxygen will generate a standard footer. See
# LATEX_HEADER for more information on how to generate a default footer and what
# special commands can be used inside the footer.
#
# Note: Only use a user-defined footer if you know what you are doing!
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_FOOTER =
# The LATEX_EXTRA_FILES tag can be used to specify one or more extra images or
# other source files which should be copied to the LATEX_OUTPUT output
# directory. Note that the files will be copied as-is; there are no commands or
# markers available.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_EXTRA_FILES =
# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated is
# prepared for conversion to PDF (using ps2pdf or pdflatex). The PDF file will
# contain links (just like the HTML output) instead of page references. This
# makes the output suitable for online browsing using a PDF viewer.
# The default value is: YES.
# This tag requires that the tag GENERATE_LATEX is set to YES.
PDF_HYPERLINKS = NO
# If the USE_PDFLATEX tag is set to YES, doxygen will use pdflatex to generate
# the PDF file directly from the LaTeX files. Set this option to YES to get a
# higher quality PDF documentation.
# The default value is: YES.
# This tag requires that the tag GENERATE_LATEX is set to YES.
USE_PDFLATEX = NO
# If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \batchmode
# command to the generated LaTeX files. This will instruct LaTeX to keep running
# if errors occur, instead of asking the user for help. This option is also used
# when generating formulas in HTML.
# The default value is: NO.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_BATCHMODE = NO
# If the LATEX_HIDE_INDICES tag is set to YES then doxygen will not include the
# index chapters (such as File Index, Compound Index, etc.) in the output.
# The default value is: NO.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_HIDE_INDICES = NO
# If the LATEX_SOURCE_CODE tag is set to YES then doxygen will include source
# code with syntax highlighting in the LaTeX output.
#
# Note that which sources are shown also depends on other settings such as
# SOURCE_BROWSER.
# The default value is: NO.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_SOURCE_CODE = NO
# The LATEX_BIB_STYLE tag can be used to specify the style to use for the
# bibliography, e.g. plainnat, or ieeetr. See
# http://en.wikipedia.org/wiki/BibTeX and \cite for more info.
# The default value is: plain.
# This tag requires that the tag GENERATE_LATEX is set to YES.
LATEX_BIB_STYLE = plain
#---------------------------------------------------------------------------
# Configuration options related to the RTF output
#---------------------------------------------------------------------------
# If the GENERATE_RTF tag is set to YES doxygen will generate RTF output. The
# RTF output is optimized for Word 97 and may not look too pretty with other RTF
# readers/editors.
# The default value is: NO.
GENERATE_RTF = NO
# The RTF_OUTPUT tag is used to specify where the RTF docs will be put. If a
# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
# it.
# The default directory is: rtf.
# This tag requires that the tag GENERATE_RTF is set to YES.
RTF_OUTPUT = rtf
# If the COMPACT_RTF tag is set to YES doxygen generates more compact RTF
# documents. This may be useful for small projects and may help to save some
# trees in general.
# The default value is: NO.
# This tag requires that the tag GENERATE_RTF is set to YES.
COMPACT_RTF = NO
# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated will
# contain hyperlink fields. The RTF file will contain links (just like the HTML
# output) instead of page references. This makes the output suitable for online
# browsing using Word or some other Word compatible readers that support those
# fields.
#
# Note: WordPad (write) and others do not support links.
# The default value is: NO.
# This tag requires that the tag GENERATE_RTF is set to YES.
RTF_HYPERLINKS = NO
# Load stylesheet definitions from file. Syntax is similar to doxygen's config
# file, i.e. a series of assignments. You only have to provide replacements,
# missing definitions are set to their default value.
#
# See also section "Doxygen usage" for information on how to generate the
# default style sheet that doxygen normally uses.
# This tag requires that the tag GENERATE_RTF is set to YES.
RTF_STYLESHEET_FILE =
# Set optional variables used in the generation of an RTF document. Syntax is
# similar to doxygen's config file. A template extensions file can be generated
# using doxygen -e rtf extensionFile.
# This tag requires that the tag GENERATE_RTF is set to YES.
RTF_EXTENSIONS_FILE =
#---------------------------------------------------------------------------
# Configuration options related to the man page output
#---------------------------------------------------------------------------
# If the GENERATE_MAN tag is set to YES doxygen will generate man pages for
# classes and files.
# The default value is: NO.
GENERATE_MAN = NO
# The MAN_OUTPUT tag is used to specify where the man pages will be put. If a
# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
# it. A directory man3 will be created inside the directory specified by
# MAN_OUTPUT.
# The default directory is: man.
# This tag requires that the tag GENERATE_MAN is set to YES.
MAN_OUTPUT = man
# The MAN_EXTENSION tag determines the extension that is added to the generated
# man pages. In case the manual section does not start with a number, the number
# 3 is prepended. The dot (.) at the beginning of the MAN_EXTENSION tag is
# optional.
# The default value is: .3.
# This tag requires that the tag GENERATE_MAN is set to YES.
MAN_EXTENSION = .3
# The MAN_SUBDIR tag determines the name of the directory created within
# MAN_OUTPUT in which the man pages are placed. If defaults to man followed by
# MAN_EXTENSION with the initial . removed.
# This tag requires that the tag GENERATE_MAN is set to YES.
MAN_SUBDIR =
# If the MAN_LINKS tag is set to YES and doxygen generates man output, then it
# will generate one additional man file for each entity documented in the real
# man page(s). These additional files only source the real man page, but without
# them the man command would be unable to find the correct page.
# The default value is: NO.
# This tag requires that the tag GENERATE_MAN is set to YES.
MAN_LINKS = NO
#---------------------------------------------------------------------------
# Configuration options related to the XML output
#---------------------------------------------------------------------------
# If the GENERATE_XML tag is set to YES doxygen will generate an XML file that
# captures the structure of the code including all documentation.
# The default value is: NO.
GENERATE_XML = NO
# The XML_OUTPUT tag is used to specify where the XML pages will be put. If a
# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
# it.
# The default directory is: xml.
# This tag requires that the tag GENERATE_XML is set to YES.
XML_OUTPUT = xml
# If the XML_PROGRAMLISTING tag is set to YES doxygen will dump the program
# listings (including syntax highlighting and cross-referencing information) to
# the XML output. Note that enabling this will significantly increase the size
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#---------------------------------------------------------------------------
# Configuration options related to the DOCBOOK output
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# The DOCBOOK_OUTPUT tag is used to specify where the Docbook pages will be put.
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# If the DOCBOOK_PROGRAMLISTING tag is set to YES doxygen will include the
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# The default value is: NO.
# This tag requires that the tag GENERATE_DOCBOOK is set to YES.
DOCBOOK_PROGRAMLISTING = NO
#---------------------------------------------------------------------------
# Configuration options for the AutoGen Definitions output
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# If the GENERATE_AUTOGEN_DEF tag is set to YES doxygen will generate an AutoGen
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# the code including all documentation. Note that this feature is still
# experimental and incomplete at the moment.
# The default value is: NO.
GENERATE_AUTOGEN_DEF = NO
#---------------------------------------------------------------------------
# Configuration options related to the Perl module output
#---------------------------------------------------------------------------
# If the GENERATE_PERLMOD tag is set to YES doxygen will generate a Perl module
# file that captures the structure of the code including all documentation.
#
# Note that this feature is still experimental and incomplete at the moment.
# The default value is: NO.
GENERATE_PERLMOD = NO
# If the PERLMOD_LATEX tag is set to YES doxygen will generate the necessary
# Makefile rules, Perl scripts and LaTeX code to be able to generate PDF and DVI
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# The default value is: NO.
# This tag requires that the tag GENERATE_PERLMOD is set to YES.
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# If the PERLMOD_PRETTY tag is set to YES the Perl module output will be nicely
# formatted so it can be parsed by a human reader. This is useful if you want to
# understand what is going on. On the other hand, if this tag is set to NO the
# size of the Perl module output will be much smaller and Perl will parse it
# just the same.
# The default value is: YES.
# This tag requires that the tag GENERATE_PERLMOD is set to YES.
PERLMOD_PRETTY = YES
# The names of the make variables in the generated doxyrules.make file are
# prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX. This is useful
# so different doxyrules.make files included by the same Makefile don't
# overwrite each other's variables.
# This tag requires that the tag GENERATE_PERLMOD is set to YES.
PERLMOD_MAKEVAR_PREFIX =
#---------------------------------------------------------------------------
# Configuration options related to the preprocessor
#---------------------------------------------------------------------------
# If the ENABLE_PREPROCESSING tag is set to YES doxygen will evaluate all
# C-preprocessor directives found in the sources and include files.
# The default value is: YES.
ENABLE_PREPROCESSING = YES
# If the MACRO_EXPANSION tag is set to YES doxygen will expand all macro names
# in the source code. If set to NO only conditional compilation will be
# performed. Macro expansion can be done in a controlled way by setting
# EXPAND_ONLY_PREDEF to YES.
# The default value is: NO.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
MACRO_EXPANSION = YES
# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES then
# the macro expansion is limited to the macros specified with the PREDEFINED and
# EXPAND_AS_DEFINED tags.
# The default value is: NO.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
EXPAND_ONLY_PREDEF = NO
# If the SEARCH_INCLUDES tag is set to YES the includes files in the
# INCLUDE_PATH will be searched if a #include is found.
# The default value is: YES.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
SEARCH_INCLUDES = YES
# The INCLUDE_PATH tag can be used to specify one or more directories that
# contain include files that are not input files but should be processed by the
# preprocessor.
# This tag requires that the tag SEARCH_INCLUDES is set to YES.
INCLUDE_PATH =
# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard
# patterns (like *.h and *.hpp) to filter out the header-files in the
# directories. If left blank, the patterns specified with FILE_PATTERNS will be
# used.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
INCLUDE_FILE_PATTERNS =
# The PREDEFINED tag can be used to specify one or more macro names that are
# defined before the preprocessor is started (similar to the -D option of e.g.
# gcc). The argument of the tag is a list of macros of the form: name or
# name=definition (no spaces). If the definition and the "=" are omitted, "=1"
# is assumed. To prevent a macro definition from being undefined via #undef or
# recursively expanded use the := operator instead of the = operator.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
PREDEFINED = itkNotUsed(x)= \
"itkSetMacro(name,type)=virtual void Set##name (type _arg);" \
"itkGetMacro(name,type)=virtual type Get##name ();" \
"itkGetConstMacro(name,type)=virtual type Get##name () const;" \
"itkSetStringMacro(name)=virtual void Set##name (const char* _arg);" \
"itkGetStringMacro(name)=virtual const char* Get##name () const;" \
"itkSetClampMacro(name,type,min,max)=virtual void Set##name (type _arg);" \
"itkSetObjectMacro(name,type)=virtual void Set##name (type* _arg);" \
"itkGetObjectMacro(name,type)=virtual type* Get##name ();" \
"itkSetConstObjectMacro(name,type)=virtual void Set##name ( const type* _arg);" \
"itkGetConstObjectMacro(name,type)=virtual const type* Get##name ();" \
"itkGetConstReferenceMacro(name,type)=virtual const type& Get##name ();" \
"itkGetConstReferenceObjectMacro(name,type)=virtual const type::Pointer& Get##name () const;" \
"itkBooleanMacro(name)=virtual void name##On (); virtual void name##Off ();" \
"itkSetVector2Macro(name,type)=virtual void Set##name (type _arg1, type _arg2) virtual void Set##name (type _arg[2]);" \
"itkGetVector2Macro(name,type)=virtual type* Get##name () const; virtual void Get##name (type& _arg1, type& _arg2) const; virtual void Get##name (type _arg[2]) const;" \
"itkSetVector3Macro(name,type)=virtual void Set##name (type _arg1, type _arg2, type _arg3) virtual void Set##name (type _arg[3]);" \
"itkGetVector3Macro(name,type)=virtual type* Get##name () const; virtual void Get##name (type& _arg1, type& _arg2, type& _arg3) const; virtual void Get##name (type _arg[3]) const;" \
"itkSetVector4Macro(name,type)=virtual void Set##name (type _arg1, type _arg2, type _arg3, type _arg4) virtual void Set##name (type _arg[4]);" \
"itkGetVector4Macro(name,type)=virtual type* Get##name () const; virtual void Get##name (type& _arg1, type& _arg2, type& _arg3, type& _arg4) const; virtual void Get##name (type _arg[4]) const;" \
"itkSetVector6Macro(name,type)=virtual void Set##name (type _arg1, type _arg2, type _arg3, type _arg4, type _arg5, type _arg6) virtual void Set##name (type _arg[6]);" \
"itkGetVector6Macro(name,type)=virtual type* Get##name () const; virtual void Get##name (type& _arg1, type& _arg2, type& _arg3, type& _arg4, type& _arg5, type& _arg6) const; virtual void Get##name (type _arg[6]) const;" \
"itkSetVectorMacro(name,type,count)=virtual void Set##name(type data[]);" \
"itkGetVectorMacro(name,type,count)=virtual type* Get##name () const;" \
"itkNewMacro(type)=static Pointer New();" \
"itkFactorylessNewMacro(type)=static Pointer New();" \
"itkCloneMacro(type)=Pointer Clone() const;" \
"itkTypeMacro(thisClass,superclass)=virtual const char *GetClassName() const;" \
"itkConceptMacro(name,concept)=enum { name = 0 };" \
"ITK_NUMERIC_LIMITS=std::numeric_limits" \
"ITK_TYPENAME=typename" \
"FEM_ABSTRACT_CLASS(thisClass,parentClass)=public: /** Standard Self typedef.*/ typedef thisClass Self; /** Standard Superclass typedef. */ typedef parentClass Superclass; /** Pointer or SmartPointer to an object. */ typedef Self* Pointer; /** Const pointer or SmartPointer to an object. */ typedef const Self* ConstPointer; private:" \
"FEM_CLASS(thisClass,parentClass)=FEM_ABSTRACT_CLASS(thisClass,parentClass) public: /** Create a new object from the existing one */ virtual Baseclass::Pointer Clone() const; /** Class ID for FEM object factory */ static const int CLID; /** Virtual function to access the class ID */ virtual int ClassID() const { return CLID; /** Object creation in an itk compatible way */ static Self::Pointer New() { return new Self(); } private:" \
FREEVERSION \
ERROR_CHECKING \
HAS_TIFF \
HAS_JPEG \
HAS_NETLIB \
HAS_PNG \
HAS_ZLIB \
HAS_GLUT \
HAS_QT \
VCL_USE_NATIVE_STL=1 \
VCL_USE_NATIVE_COMPLEX=1 \
VCL_HAS_BOOL=1 \
VXL_BIG_ENDIAN=1 \
VXL_LITTLE_ENDIAN=0 \
VNL_DLL_DATA= \
size_t=vcl_size_t \
"US_PREPEND_NAMESPACE(x)=us::x" \
"US_BEGIN_NAMESPACE= namespace us {" \
"US_END_NAMESPACE=}" \
"US_BASECLASS_NAME=itk::LightObject" \
US_EXPORT= \
"DEPRECATED(func)=func" \
@US_PLATFORM@
# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then this
# tag can be used to specify a list of macro names that should be expanded. The
# macro definition that is found in the sources will be used. Use the PREDEFINED
# tag if you want to use a different macro definition that overrules the
# definition found in the source code.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
EXPAND_AS_DEFINED =
# If the SKIP_FUNCTION_MACROS tag is set to YES then doxygen's preprocessor will
# remove all references to function-like macros that are alone on a line, have
# an all uppercase name, and do not end with a semicolon. Such function macros
# are typically used for boiler-plate code, and will confuse the parser if not
# removed.
# The default value is: YES.
# This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
SKIP_FUNCTION_MACROS = YES
#---------------------------------------------------------------------------
# Configuration options related to external references
#---------------------------------------------------------------------------
# The TAGFILES tag can be used to specify one or more tag files. For each tag
# file the location of the external documentation should be added. The format of
# a tag file without this location is as follows:
# TAGFILES = file1 file2 ...
# Adding location for the tag files is done as follows:
# TAGFILES = file1=loc1 "file2 = loc2" ...
# where loc1 and loc2 can be relative or absolute paths or URLs. See the
# section "Linking to external documentation" for more information about the use
# of tag files.
# Note: Each tag file must have a unique name (where the name does NOT include
# the path). If a tag file is not located in the directory in which doxygen is
# run, you must also specify the path to the tagfile here.
TAGFILES =
# When a file name is specified after GENERATE_TAGFILE, doxygen will create a
# tag file that is based on the input files it reads. See section "Linking to
# external documentation" for more information about the usage of tag files.
GENERATE_TAGFILE = @MITK_DOXYGEN_TAGFILE_NAME@
# If the ALLEXTERNALS tag is set to YES all external class will be listed in the
# class index. If set to NO only the inherited external classes will be listed.
# The default value is: NO.
ALLEXTERNALS = NO
# If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed in
# the modules index. If set to NO, only the current project's groups will be
# listed.
# The default value is: YES.
EXTERNAL_GROUPS = NO
# If the EXTERNAL_PAGES tag is set to YES all external pages will be listed in
# the related pages index. If set to NO, only the current project's pages will
# be listed.
# The default value is: YES.
EXTERNAL_PAGES = YES
#---------------------------------------------------------------------------
# Configuration options related to the dot tool
#---------------------------------------------------------------------------
# If the CLASS_DIAGRAMS tag is set to YES doxygen will generate a class diagram
# (in HTML and LaTeX) for classes with base or super classes. Setting the tag to
# NO turns the diagrams off. Note that this option also works with HAVE_DOT
# disabled, but it is recommended to install and use dot, since it yields more
# powerful graphs.
# The default value is: YES.
CLASS_DIAGRAMS = YES
# You can include diagrams made with dia in doxygen documentation. Doxygen will
# then run dia to produce the diagram and insert it in the documentation. The
# DIA_PATH tag allows you to specify the directory where the dia binary resides.
# If left empty dia is assumed to be found in the default search path.
DIA_PATH =
# If set to YES, the inheritance and collaboration graphs will hide inheritance
# and usage relations if the target is undocumented or is not a class.
# The default value is: YES.
HIDE_UNDOC_RELATIONS = YES
# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is
# available from the path. This tool is part of Graphviz (see:
# http://www.graphviz.org/), a graph visualization toolkit from AT&T and Lucent
# Bell Labs. The other options in this section have no effect if this option is
# set to NO
# The default value is: NO.
HAVE_DOT = @HAVE_DOT@
# The DOT_NUM_THREADS specifies the number of dot invocations doxygen is allowed
# to run in parallel. When set to 0 doxygen will base this on the number of
# processors available in the system. You can set it explicitly to a value
# larger than 0 to get control over the balance between CPU load and processing
# speed.
# Minimum value: 0, maximum value: 32, default value: 0.
# This tag requires that the tag HAVE_DOT is set to YES.
DOT_NUM_THREADS = @MITK_DOXYGEN_DOT_NUM_THREADS@
# When you want a differently looking font in the dot files that doxygen
# generates you can specify the font name using DOT_FONTNAME. You need to make
# sure dot is able to find the font, which can be done by putting it in a
# standard location or by setting the DOTFONTPATH environment variable or by
# setting DOT_FONTPATH to the directory containing the font.
# The default value is: Helvetica.
# This tag requires that the tag HAVE_DOT is set to YES.
DOT_FONTNAME = Helvetica
# The DOT_FONTSIZE tag can be used to set the size (in points) of the font of
# dot graphs.
# Minimum value: 4, maximum value: 24, default value: 10.
# This tag requires that the tag HAVE_DOT is set to YES.
DOT_FONTSIZE = 10
# By default doxygen will tell dot to use the default font as specified with
# DOT_FONTNAME. If you specify a different font using DOT_FONTNAME you can set
# the path where dot can find it using this tag.
# This tag requires that the tag HAVE_DOT is set to YES.
DOT_FONTPATH =
# If the CLASS_GRAPH tag is set to YES then doxygen will generate a graph for
# each documented class showing the direct and indirect inheritance relations.
# Setting this tag to YES will force the CLASS_DIAGRAMS tag to NO.
# The default value is: YES.
# This tag requires that the tag HAVE_DOT is set to YES.
CLASS_GRAPH = YES
# If the COLLABORATION_GRAPH tag is set to YES then doxygen will generate a
# graph for each documented class showing the direct and indirect implementation
# dependencies (inheritance, containment, and class references variables) of the
# class with other documented classes.
# The default value is: YES.
# This tag requires that the tag HAVE_DOT is set to YES.
COLLABORATION_GRAPH = YES
# If the GROUP_GRAPHS tag is set to YES then doxygen will generate a graph for
# groups, showing the direct groups dependencies.
# The default value is: YES.
# This tag requires that the tag HAVE_DOT is set to YES.
GROUP_GRAPHS = YES
# If the UML_LOOK tag is set to YES doxygen will generate inheritance and
# collaboration diagrams in a style similar to the OMG's Unified Modeling
# Language.
# The default value is: NO.
# This tag requires that the tag HAVE_DOT is set to YES.
UML_LOOK = @MITK_DOXYGEN_UML_LOOK@
# If the UML_LOOK tag is enabled, the fields and methods are shown inside the
# class node. If there are many fields or methods and many nodes the graph may
# become too big to be useful. The UML_LIMIT_NUM_FIELDS threshold limits the
# number of items for each type to make the size more manageable. Set this to 0
# for no limit. Note that the threshold may be exceeded by 50% before the limit
# is enforced. So when you set the threshold to 10, up to 15 fields may appear,
# but if the number exceeds 15, the total amount of fields shown is limited to
# 10.
# Minimum value: 0, maximum value: 100, default value: 10.
# This tag requires that the tag HAVE_DOT is set to YES.
UML_LIMIT_NUM_FIELDS = 10
# If the TEMPLATE_RELATIONS tag is set to YES then the inheritance and
# collaboration graphs will show the relations between templates and their
# instances.
# The default value is: NO.
# This tag requires that the tag HAVE_DOT is set to YES.
TEMPLATE_RELATIONS = YES
# If the INCLUDE_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are set to
# YES then doxygen will generate a graph for each documented file showing the
# direct and indirect include dependencies of the file with other documented
# files.
# The default value is: YES.
# This tag requires that the tag HAVE_DOT is set to YES.
INCLUDE_GRAPH = NO
# If the INCLUDED_BY_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are
# set to YES then doxygen will generate a graph for each documented file showing
# the direct and indirect include dependencies of the file with other documented
# files.
# The default value is: YES.
# This tag requires that the tag HAVE_DOT is set to YES.
INCLUDED_BY_GRAPH = NO
# If the CALL_GRAPH tag is set to YES then doxygen will generate a call
# dependency graph for every global function or class method.
#
# Note that enabling this option will significantly increase the time of a run.
# So in most cases it will be better to enable call graphs for selected
# functions only using the \callgraph command.
# The default value is: NO.
# This tag requires that the tag HAVE_DOT is set to YES.
CALL_GRAPH = NO
# If the CALLER_GRAPH tag is set to YES then doxygen will generate a caller
# dependency graph for every global function or class method.
#
# Note that enabling this option will significantly increase the time of a run.
# So in most cases it will be better to enable caller graphs for selected
# functions only using the \callergraph command.
# The default value is: NO.
# This tag requires that the tag HAVE_DOT is set to YES.
CALLER_GRAPH = NO
# If the GRAPHICAL_HIERARCHY tag is set to YES then doxygen will graphical
# hierarchy of all classes instead of a textual one.
# The default value is: YES.
# This tag requires that the tag HAVE_DOT is set to YES.
GRAPHICAL_HIERARCHY = NO
# If the DIRECTORY_GRAPH tag is set to YES then doxygen will show the
# dependencies a directory has on other directories in a graphical way. The
# dependency relations are determined by the #include relations between the
# files in the directories.
# The default value is: YES.
# This tag requires that the tag HAVE_DOT is set to YES.
DIRECTORY_GRAPH = YES
# The DOT_IMAGE_FORMAT tag can be used to set the image format of the images
# generated by dot.
# Note: If you choose svg you need to set HTML_FILE_EXTENSION to xhtml in order
# to make the SVG files visible in IE 9+ (other browsers do not have this
# requirement).
# Possible values are: png, jpg, gif and svg.
# The default value is: png.
# This tag requires that the tag HAVE_DOT is set to YES.
DOT_IMAGE_FORMAT = png
# If DOT_IMAGE_FORMAT is set to svg, then this option can be set to YES to
# enable generation of interactive SVG images that allow zooming and panning.
#
# Note that this requires a modern browser other than Internet Explorer. Tested
# and working are Firefox, Chrome, Safari, and Opera.
# Note: For IE 9+ you need to set HTML_FILE_EXTENSION to xhtml in order to make
# the SVG files visible. Older versions of IE do not have SVG support.
# The default value is: NO.
# This tag requires that the tag HAVE_DOT is set to YES.
INTERACTIVE_SVG = NO
# The DOT_PATH tag can be used to specify the path where the dot tool can be
# found. If left blank, it is assumed the dot tool can be found in the path.
# This tag requires that the tag HAVE_DOT is set to YES.
DOT_PATH = "@DOXYGEN_DOT_PATH@"
# The DOTFILE_DIRS tag can be used to specify one or more directories that
# contain dot files that are included in the documentation (see the \dotfile
# command).
# This tag requires that the tag HAVE_DOT is set to YES.
DOTFILE_DIRS =
# The MSCFILE_DIRS tag can be used to specify one or more directories that
# contain msc files that are included in the documentation (see the \mscfile
# command).
MSCFILE_DIRS =
# The DIAFILE_DIRS tag can be used to specify one or more directories that
# contain dia files that are included in the documentation (see the \diafile
# command).
DIAFILE_DIRS =
# When using plantuml, the PLANTUML_JAR_PATH tag should be used to specify the
# path where java can find the plantuml.jar file. If left blank, it is assumed
# PlantUML is not used or called during a preprocessing step. Doxygen will
# generate a warning when it encounters a \startuml command in this case and
# will not generate output for the diagram.
# This tag requires that the tag HAVE_DOT is set to YES.
PLANTUML_JAR_PATH =
# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of nodes
# that will be shown in the graph. If the number of nodes in a graph becomes
# larger than this value, doxygen will truncate the graph, which is visualized
# by representing a node as a red box. Note that doxygen if the number of direct
# children of the root node in a graph is already larger than
# DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note that
# the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH.
# Minimum value: 0, maximum value: 10000, default value: 50.
# This tag requires that the tag HAVE_DOT is set to YES.
DOT_GRAPH_MAX_NODES = 120
# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the graphs
# generated by dot. A depth value of 3 means that only nodes reachable from the
# root by following a path via at most 3 edges will be shown. Nodes that lay
# further from the root node will be omitted. Note that setting this option to 1
# or 2 may greatly reduce the computation time needed for large code bases. Also
# note that the size of a graph can be further restricted by
# DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction.
# Minimum value: 0, maximum value: 1000, default value: 0.
# This tag requires that the tag HAVE_DOT is set to YES.
MAX_DOT_GRAPH_DEPTH = 0
# Set the DOT_TRANSPARENT tag to YES to generate images with a transparent
# background. This is disabled by default, because dot on Windows does not seem
# to support this out of the box.
#
# Warning: Depending on the platform used, enabling this option may lead to
# badly anti-aliased labels on the edges of a graph (i.e. they become hard to
# read).
# The default value is: NO.
# This tag requires that the tag HAVE_DOT is set to YES.
DOT_TRANSPARENT = NO
# Set the DOT_MULTI_TARGETS tag to YES allow dot to generate multiple output
# files in one run (i.e. multiple -o and -T options on the command line). This
# makes dot run faster, but since only newer versions of dot (>1.8.10) support
# this, this feature is disabled by default.
# The default value is: NO.
# This tag requires that the tag HAVE_DOT is set to YES.
DOT_MULTI_TARGETS = NO
# If the GENERATE_LEGEND tag is set to YES doxygen will generate a legend page
# explaining the meaning of the various boxes and arrows in the dot generated
# graphs.
# The default value is: YES.
# This tag requires that the tag HAVE_DOT is set to YES.
GENERATE_LEGEND = YES
# If the DOT_CLEANUP tag is set to YES doxygen will remove the intermediate dot
# files that are used to generate the various graphs.
# The default value is: YES.
# This tag requires that the tag HAVE_DOT is set to YES.
DOT_CLEANUP = YES
diff --git a/Utilities/CMakeLists.txt b/Utilities/CMakeLists.txt
index 1b090440c7..c1f812e720 100644
--- a/Utilities/CMakeLists.txt
+++ b/Utilities/CMakeLists.txt
@@ -1,20 +1,7 @@
SUPPRESS_ALL_WARNINGS()
-# most stuff of these uses itk_zlib.h (via mitkIpPic.h)
-find_package(ITK)
-set(ITK_NO_IO_FACTORY_REGISTER_MANAGER 1)
-include(${ITK_USE_FILE})
-
-# some legacy util files include in the old style with prefixed directory,
-# like #include <ipPic/mitkIpPic.h>
-include_directories(.)
-
-add_subdirectory(IpPic)
-add_subdirectory(IpFunc)
-add_subdirectory(IpSegmentation)
-
set(MITK_MODULE_NAME_REGEX_MATCH )
set(MITK_MODULE_NAME_REGEX_NOT_MATCH )
set(MITK_MODULE_NAME_PREFIX )
add_subdirectory(mbilog)
add_subdirectory(qtsingleapplication)
diff --git a/Utilities/IpFunc/AddC.c b/Utilities/IpFunc/AddC.c
deleted file mode 100644
index a86c56448d..0000000000
--- a/Utilities/IpFunc/AddC.c
+++ /dev/null
@@ -1,250 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * this function adds a constant to an image
- */
-
-/** @brief adds a constant to an image
- * @param pic_old pointer to the first image
- * @param value constant which is added to image
- * @param keep tells whether the image type could be changed when
- * necessary
- * @arg @c mitkIpFuncNoKeep : image data type could be changed
- * @arg @c mitkIpFuncKeep : image data type of original pictures
- * is kept (if there will be an
- * over-/underflow the max. or min.
- * possible greyvalue is taken)
- * @param pic_return - memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the new image
- *
- * @author Antje Schroeder
- * @date 01.08.95
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncAddC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macros */
-
-#define ADDC( type_1, pic_1, pic_new, value ) \
-{ \
- mitkIpPicFORALL_3 ( ADDC2, pic_new, pic_1, type_1, value ); \
-} \
-
-
-#define ADDC2( type_n, pic_new, pic_1, type_1, value ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type_n * ) pic_new->data ) [i] = ( type_n ) \
- ( value + (( type_1 * ) pic_1->data ) [i] ); \
- } \
-}
-
-#define ADDC3( type_n, pic_1, pic_new, value ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- type_n help; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help = (( type_n * ) pic_1->data ) [i]; \
- (( type_n * ) pic_new->data ) [i] = \
- ( max_gv > ( mitkIpFloat8_t ) help + value ) ? \
- (( min_gv < ( mitkIpFloat8_t ) help + value ) ? \
- ( (type_n)help + (type_n)value ) : ( type_n ) min_gv ) :\
- ( type_n ) max_gv; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncAddC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpFloat8_t min1, max1; /* extreme greyvalues of 1. image */
- mitkIpFloat8_t smin, smax; /* product of extreme greyvalues */
-
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* check value */
-
- if ( value == 0. ) return ( pic_old );
-
- /* calculate max. and min. possible greyvalues for data type of images*/
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* find out data type of new iamge */
-
- if ( keep == mitkIpFuncKeep )
- {
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
- }
- else if ( keep == mitkIpFuncNoKeep )
- {
- /* calculate max. and min. greyvalues of both images */
-
- if ( mitkIpFuncExtr ( pic_old, &min1, &max1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- smax = max1 + value;
- smin = min1 + value;
-
- /* change image type of images of type mitkIpPicInt */
-
- if ( pic_old->type == mitkIpPicInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_old->type == mitkIpPicUInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->type = mitkIpPicInt;
- pic_new->bpe = 16;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- if ( smax > max_gv || smin < min_gv )
- {
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_old->type == mitkIpPicFloat )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( keep == mitkIpFuncNoKeep )
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to invert the picture (for all data types) */
-
- if ( keep == mitkIpFuncNoKeep )
- mitkIpPicFORALL_2 ( ADDC, pic_old, pic_new, value )
- else if ( keep == mitkIpFuncKeep )
- mitkIpPicFORALL_2 ( ADDC3, pic_old, pic_new, value )
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/AddI.c b/Utilities/IpFunc/AddI.c
deleted file mode 100644
index bc082023ed..0000000000
--- a/Utilities/IpFunc/AddI.c
+++ /dev/null
@@ -1,279 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
-* this function adds two images
-*/
-
-/** @brief adds two images
- * @param pic_1 pointer to the first image
- * @param pic_2 pointer to the second image
- * @param keep tells whether the image type could be changed when
- * necessary
- * @arg @c mitkIpFuncNoKeep : image data type could be changed
- * @arg @c mitkIpFuncKeep : image data type of original pictures is
- * kept (if there will be an over-/underflow
- * the max. or min. possible greyvalue is taken)
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the new image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncAddI ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncAddI\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-/* definition of macros */
-
-#define ADDI( type_1, pic_1, pic_2, pic_new ) \
-{ \
- mitkIpPicFORALL_3 ( ADDI2, pic_new, pic_1, pic_2, type_1 ); \
-} \
-
-
-#define ADDI2( type_n, pic_new, pic_1, pic_2, type_1 ) \
-{ \
- mitkIpUInt4_t i; \
- mitkIpUInt4_t no_elem; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type_n * ) pic_new->data ) [i] = ( type_n ) \
- ( (( type_1 * ) pic_1->data ) [i] + \
- (( type_1 * ) pic_2->data ) [i] ); \
- } \
-}
-
-#define ADDI3( type_n, pic_1, pic_2, pic_new ) \
-{ \
- mitkIpUInt4_t i; \
- mitkIpUInt4_t no_elem; \
- type_n help; \
- type_n help2; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help = (( type_n * ) pic_1->data ) [i]; \
- help2 = (( type_n * ) pic_2->data ) [i]; \
- (( type_n * ) pic_new->data ) [i] = \
- ( max_gv > ( mitkIpFloat8_t ) help + ( mitkIpFloat8_t ) help2 ) ? \
- (( min_gv < ( mitkIpFloat8_t ) help + ( mitkIpFloat8_t ) help2 ) ? \
- ( (type_n)help + (type_n)help2 ) : ( type_n ) min_gv ) :\
- ( type_n ) max_gv; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncAddI ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpUInt4_t i; /* loop index */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpFloat8_t min1, max1; /* extreme greyvalues of 1. image */
- mitkIpFloat8_t min2, max2; /* extreme greyvalues of 2. image */
- mitkIpFloat8_t smin, smax; /* product of extreme greyvalues */
-
-
- /* ckeck whether data are correct */
-
- if ( _mitkIpFuncError ( pic_1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( pic_2 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* check whether images have the same size */
-
- if ( ( pic_1->type != pic_2->type ) || ( pic_1->bpe != pic_2->bpe ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
- if ( pic_1->dim == pic_2->dim )
- for ( i = 0; i < _mitkIpPicNDIM; i++ )
- {
- if ( pic_1->n[i] != pic_2->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
-
- /* calculate max. and min. possible greyvalues for data type of images*/
-
- if ( _mitkIpFuncExtT ( pic_1->type, pic_1->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* find out data type of new iamge */
-
- if ( keep == mitkIpFuncKeep )
- {
- pic_new = _mitkIpFuncMalloc ( pic_1, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
- }
- else if ( keep == mitkIpFuncNoKeep )
- {
- /* calculate max. and min. greyvalues of both images */
-
- if ( mitkIpFuncExtr ( pic_1, &min1, &max1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( mitkIpFuncExtr ( pic_2, &min2, &max2 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- smax = max1 + max2;
- smin = min1 + min2;
-
- /* change image type of images of type mitkIpPicInt */
-
- if ( pic_1->type == mitkIpPicInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_1->type == mitkIpPicUInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- pic_new->type = mitkIpPicInt;
- pic_new->bpe = 16;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- if ( smax > max_gv || smin < min_gv )
- {
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_1->type == mitkIpPicFloat )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( keep == mitkIpFuncNoKeep )
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to invert the picture (for all data types) */
-
- if ( keep == mitkIpFuncNoKeep )
- mitkIpPicFORALL_2 ( ADDI, pic_1, pic_2, pic_new )
- else if ( keep == mitkIpFuncKeep )
- mitkIpPicFORALL_2 ( ADDI3, pic_1, pic_2, pic_new )
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_1);
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/AddSl.c b/Utilities/IpFunc/AddSl.c
deleted file mode 100644
index 2c8ca6a6cd..0000000000
--- a/Utilities/IpFunc/AddSl.c
+++ /dev/null
@@ -1,251 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
-* this function adds all slices of an image
-*/
-
-/**this function adds all slices of an image
- * @param pic pointer to the 3D image
- * @param keep tells whether the image type could be changed when
- * necessary
- * @arg @c mitkIpFuncNoKeep : image data type could be changed
- * @arg @c mitkIpFuncKeep: image data type of original pictures
- * is kept (if there will be an
- * over-/underflow the max. or min.
- * possible greyvalue is taken)
- *
- * @RETURN pointer to the new 2D image
- *
- * @AUTHOR Antje Schroeder
- * @DATE 01.08.95
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncAddSl( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t keep );
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macros */
-
-#define ADDSL( type_old, pic_old, pic_new ) \
-{ \
- mitkIpPicFORALL_2 ( ADDSL2, pic_new, pic_old, type_old ); \
-}
-
-#define ADDSL2( type_new, pic_new, pic_old, type_old ) \
-{ \
- mitkIpUInt4_t i, j; /* loop counter */ \
- mitkIpUInt4_t off_old; /* offset in 3D image */ \
- mitkIpUInt4_t slice_size; /* size of one image slice */ \
- \
- slice_size = _mitkIpPicElements ( pic_new ); \
- for ( i = 0; i < pic_old->n[2]; i++ ) \
- { \
- off_old = i * slice_size; \
- for ( j = 0; j < slice_size; j++ ) \
- (( type_new *)pic_new->data)[j] = \
- (( type_new *)pic_new->data)[j] + \
- ( type_new )(( type_old *)pic_old->data)[j+off_old]; \
- } \
-}
-
-#define ADDSL3( type, pic_old, pic_new ) \
-{ \
- mitkIpUInt4_t i, j; /* loop counter */ \
- mitkIpUInt4_t off_old; /* offset in 3D image */ \
- mitkIpUInt4_t slice_size; /* size of one image slice */ \
- type help, help2; \
- \
- slice_size = _mitkIpPicElements ( pic_new ); \
- for ( i = 0; i < pic_old->n[2]; i++ ) \
- { \
- off_old = i * slice_size; \
- for ( j = 0; j < slice_size; j++ ) \
- { \
- help = (( type *)pic_old->data)[j+off_old]; \
- help2 = (( type *)pic_new->data)[j]; \
- (( type *)pic_new->data)[j] = \
- ( max_gv > ( mitkIpFloat8_t ) help + help2 ) ? \
- (( min_gv < ( mitkIpFloat8_t ) help + help2 ) ? \
- ( (type)help + (type)help2 ) : (type) min_gv ) : \
- (type) max_gv; \
- } \
- } \
-}
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncAddSl( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t keep )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpFloat8_t min1, max1; /* extreme greyvalues of 1. image */
- mitkIpFloat8_t smin, smax; /* product of extreme greyvalues */
-
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max. and min. possible greyvalues for data type of images*/
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* find out data type of new iamge */
-
- if ( keep == mitkIpFuncKeep )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
- }
- else if ( keep == mitkIpFuncNoKeep )
- {
- /* calculate max. and min. greyvalues of both images */
-
- if ( mitkIpFuncExtr ( pic_old, &min1, &max1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- smax = pic_old->n[2] * max1;
- smin = pic_old->n[2] * min1;
-
- /* change image type of images of type mitkIpPicInt */
-
- if ( pic_old->type == mitkIpPicInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_old->type == mitkIpPicUInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->type = mitkIpPicInt;
- pic_new->bpe = 16;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- if ( smax > max_gv || smin < min_gv )
- {
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_old->type == mitkIpPicFloat )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- pic_new->dim = 2;
- pic_new->n[2] = 0;
- pic_new->data = calloc ( _mitkIpPicElements ( pic_new ), pic_new->bpe/8 );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to invert the picture (for all data types) */
-
- if ( keep == mitkIpFuncNoKeep )
- mitkIpPicFORALL_1 ( ADDSL, pic_old, pic_new )
- else if ( keep == mitkIpFuncKeep )
- mitkIpPicFORALL_1 ( ADDSL3, pic_old, pic_new )
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/And.c b/Utilities/IpFunc/And.c
deleted file mode 100644
index 32a380eed2..0000000000
--- a/Utilities/IpFunc/And.c
+++ /dev/null
@@ -1,145 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
-* this function connects two images using AND
-*/
-
-/** @brief connects two images using AND
- * @param pic_1 pointer to the first image
- * @param pic_2 pointer to the second image
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the new image
- *
- * @author Antje Schroeder
- * @date 08.06.95
- *
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
- mitkIpPicDescriptor *mitkIpFuncAnd ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncAnd\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of invert-macro */
-
-#define AND( type, pic_1, pic_2, pic_new ) \
-{ \
- mitkIpUInt4_t i; \
- \
- \
- for ( i = 0; i < _mitkIpPicElements ( pic_1 ); i++ ) \
- { \
- (( type * ) pic_new->data ) [i] = \
- ( (( type * ) pic_1->data ) [i] && \
- (( type * ) pic_2->data ) [i] ); \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-
- mitkIpPicDescriptor *mitkIpFuncAnd ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpPicDescriptor *pic_return )
- {
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpUInt4_t i; /* loop index */
-
- /* check whether images have the same size */
-
- if ( _mitkIpFuncError ( pic_1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( pic_2 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( ( pic_1->type != pic_2->type ) || ( pic_1->bpe != pic_2->bpe ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
- if ( pic_1->dim == pic_2->dim )
- for ( i = 0; i < _mitkIpPicNDIM; i++ )
- {
- if ( pic_1->n[i] != pic_2->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
-
- /* allocate new iumage */
-
- pic_new = _mitkIpFuncMalloc ( pic_1, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* macro to connect two images using AND */
-
- mitkIpPicFORALL_2 ( AND, pic_1, pic_2, pic_new );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_1);
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/Border.c b/Utilities/IpFunc/Border.c
deleted file mode 100644
index c8667782c2..0000000000
--- a/Utilities/IpFunc/Border.c
+++ /dev/null
@@ -1,235 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * This function sets all border pixels to zero.
- */
-
-/** @brief sets all border pixels to zero.
- *
- * The size of the border is calculated using the size of the single
- * dimensions of the mask (dim/2).
- *
- * @param pic_old input image
- * @param mask mask which is used to calculate the border size
- * @param pic_rtn memory used for result image (if pic_rtn == NULL new
- * memory is allocated.
- *
- * @return pic_new result image
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncBorder ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *mask,
- mitkIpPicDescriptor *pic_rtn );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
- /* definition of macros */
-
-
-#define BORDER( type, pic, size ) \
-{ \
- mitkIpUInt4_t i; /* loop index */ \
- mitkIpUInt4_t anf[_mitkIpPicNDIM]; /* */ \
- mitkIpUInt4_t end[_mitkIpPicNDIM]; /* */ \
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* used to calculate offset of image pixels */ \
- \
- \
- for ( i = 0; i < pic->dim; i++ ) \
- { \
- anf[i] = 0; \
- end[i] = pic->n[i]; \
- } \
- for ( i = pic->dim; i < _mitkIpPicNDIM; i++ ) \
- { \
- anf[i] = 0; \
- end[i] = 1; \
- pic->n[i] = 1; \
- } \
- for ( i = 0; i < pic->dim; i++ ) \
- { \
- anf[i] = pic->n[i] - mask->n[i]/2; \
- end[i] = mask->n[i]/2; \
- for ( ind[7] = 0; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = 0; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = 0; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = 0; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = 0; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = 0; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = 0; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = size[1] * ind[1] + off[2]; \
- for ( ind[0] = 0; ind[0] < end[0]; ind[0]++ ) \
- { \
- (( type * ) pic_new->data )[off[1]] = 0; \
- off[1]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- for ( ind[7] = anf[7]; ind[7] < pic->n[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = anf[6]; ind[6] < pic->n[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = anf[5]; ind[5] < pic->n[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = anf[4]; ind[4] < pic->n[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = anf[3]; ind[3] < pic->n[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = anf[2]; ind[2] < pic->n[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = anf[1]; ind[1] < pic->n[1]; ind[1]++ ) \
- { \
- off[1] = size[1] * ind[1] + off[2]; \
- off[0] = off[1] + anf[0]; \
- for ( ind[0] = anf[0]; ind[0] < pic->n[0]; ind[0]++ ) \
- { \
- (( type * ) pic_new->data )[off[0]] = 0; \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- end[i] = pic->n[i]; \
- anf[i] = 0; \
- } \
-}
-
-/* ------------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *mitkIpFuncBorder ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *mask,
- mitkIpPicDescriptor *pic_rtn )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */
-
- /* check whEther data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( mask ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( pic_old->dim != mask->dim )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- for ( i = 0; i < pic_old->dim; i++ )
- {
- if ( pic_old->n[i] <= mask->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
-
-
- /* create a new picture, copy the header, allocate memory */
-
-/* pic_new = _mitkIpFuncMalloc ( pic_old, pic_rtn, mitkIpOVERWRITE );*/
- if ( pic_rtn == NULL )
- pic_new = mitkIpPicClone ( pic_old );
- else
- pic_new = pic_old;
-
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* initialize vectors and variables */
-
- size[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
- size[pic_old->dim] = 0;
-
- mitkIpPicFORALL_1 ( BORDER, pic_old, size )
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-#endif
diff --git a/Utilities/IpFunc/BorderX.c b/Utilities/IpFunc/BorderX.c
deleted file mode 100644
index 2fbe4d386d..0000000000
--- a/Utilities/IpFunc/BorderX.c
+++ /dev/null
@@ -1,251 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * This function sets all border pixels to a spezified value.
- */
-
-/** @brief sets all border pixels to a spezified value.
- *
- * The size of the border is calculated using the size of the single
- * dimensions of the mask (dim/2)
- *
- *
- * @param pic_old input image
- * @param mask mask which is used to calculate the border size
- * @param value border value
- * @param pic_rtn memory used for result image (if pic_rtn == NULL new
- * memory is allocated.
- *
- * @return pic_new result image
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncBorderX ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *mask,
- mitkIpFloat8_t value,
- mitkIpPicDescriptor *pic_rtn );
-
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of macros */
-
-#define BORDER( type, pic, size, value ) \
-{ \
- mitkIpUInt4_t i; /* loop index */ \
- mitkIpUInt4_t anf[_mitkIpPicNDIM]; /* */ \
- mitkIpUInt4_t end[_mitkIpPicNDIM]; /* */ \
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* used to calculate offset of image pixels */ \
- \
- \
- for ( i = 0; i < pic->dim; i++ ) \
- { \
- anf[i] = 0; \
- end[i] = pic->n[i]; \
- } \
- for ( i = pic->dim; i < _mitkIpPicNDIM; i++ ) \
- { \
- anf[i] = 0; \
- end[i] = 1; \
- pic->n[i] = 1; \
- } \
- for ( i = 0; i < pic->dim; i++ ) \
- { \
- anf[i] = pic->n[i] - mask->n[i]/2; \
- end[i] = mask->n[i]/2; \
- for ( ind[7] = 0; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = 0; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = 0; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = 0; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = 0; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = 0; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = 0; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = size[1] * ind[1] + off[2]; \
- for ( ind[0] = 0; ind[0] < end[0]; ind[0]++ ) \
- { \
- (( type * ) pic_new->data )[off[1]] = ( type ) value; \
- off[1]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- for ( ind[7] = anf[7]; ind[7] < pic->n[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = anf[6]; ind[6] < pic->n[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = anf[5]; ind[5] < pic->n[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = anf[4]; ind[4] < pic->n[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = anf[3]; ind[3] < pic->n[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = anf[2]; ind[2] < pic->n[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = anf[1]; ind[1] < pic->n[1]; ind[1]++ ) \
- { \
- off[1] = size[1] * ind[1] + off[2]; \
- off[0] = off[1] + anf[0]; \
- for ( ind[0] = anf[0]; ind[0] < pic->n[0]; ind[0]++ ) \
- { \
- (( type * ) pic_new->data )[off[0]] = ( type ) value; \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- end[i] = pic->n[i]; \
- anf[i] = 0; \
- }\
-}
-
-/* ------------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *mitkIpFuncBorderX ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *mask,
- mitkIpFloat8_t value,
- mitkIpPicDescriptor *pic_rtn )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */
- mitkIpFloat8_t max_gv, min_gv;
-
- /* check whEther data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( mask ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( ( pic_old->dim != mask->dim ) || ( mask->dim > 3 ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- for ( i = 0; i < pic_old->dim; i++ )
- {
- if ( pic_old->n[i] <= mask->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( ( value > max_gv ) || ( value < min_gv ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* create a new picture, copy the header, allocate memory */
-
- /* pic_new = _mitkIpFuncMalloc ( pic_old, pic_rtn, mitkIpOVERWRITE );*/
- if ( pic_rtn == NULL )
- pic_new = mitkIpPicClone ( pic_old );
- else
- pic_new = pic_old;
-
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* initialize vectors and variables */
-
- size[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
- size[pic_old->dim] = 0;
-
- mitkIpPicFORALL_2 ( BORDER, pic_old, size, value )
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-#endif
-
diff --git a/Utilities/IpFunc/Box.c b/Utilities/IpFunc/Box.c
deleted file mode 100644
index 465d8b810e..0000000000
--- a/Utilities/IpFunc/Box.c
+++ /dev/null
@@ -1,98 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * This Function calulates the bounding box
- */
-
-
-/** This Function calulates the bounding box
- *
- * @param pic_old binary image: contains the region of interest
- * @param beg pointer to left upper corner
- * @param end pointer to right lower corner
- *
- * @return @arg @c mitkIpFuncOK no error occured
- * @arg @c mitkIpFuncERROR error occured (description of error in mitkIpFuncErrno)
- *
- * @warning this version could only be used for 2D and 3D images, in
- * later version it should be possible to use it for every dimension
- *
- * AUTHOR & DATE
- */
-
-#include "mitkIpFuncP.h"
-
-mitkIpUInt4_t mitkIpFuncBox ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t **beg,
- mitkIpUInt4_t **end ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-mitkIpUInt4_t mitkIpFuncBox ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t **beg,
- mitkIpUInt4_t **end )
-{
-
- /* check data */
-
- if ( pic_old->dim == 2 )
- {
- _mitkIpFuncBox2d ( pic_old, beg, end );
- if ( mitkIpFuncErrno > mitkIpFuncOK )
- return ( mitkIpFuncERROR );
- }
- else if ( pic_old->dim == 3 )
- {
- _mitkIpFuncBox3d ( pic_old, beg, end );
- if ( mitkIpFuncErrno > mitkIpFuncOK )
- return ( mitkIpFuncERROR );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- return ( mitkIpFuncOK );
-}
-
-#endif
-
diff --git a/Utilities/IpFunc/Box2d.c b/Utilities/IpFunc/Box2d.c
deleted file mode 100644
index 3ea0276657..0000000000
--- a/Utilities/IpFunc/Box2d.c
+++ /dev/null
@@ -1,169 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
- * _mitkIpFuncBox2d
- *---------------------------------------------------------------------
- * DESCRIPTION
- * This Function calulates the bounding box
- *
- * FUNCTION DECLARATION
- *
- * PARAMETERS
- * pic_old - binary image: contains the region of interest
- * beg - pointer to left upper corner
- * end - pointer to right lower corner
- *
- * RETURN VALUES
- * mitkIpFuncOK - no error occured
- * mitkIpFuncERROR - error occured (description of error in mitkIpFuncErrno)
- *
- * UPDATES
- * this version could only be used for 3D images, in later version
- * it should be possible to use it for every dimension
- *
- * AUTHOR & DATE
- * Antje Schroeder 08.01.97
- *
- *---------------------------------------------------------------------
- */
-/* include Files */
-
-#include "mitkIpFuncP.h"
-
-/* definition of Box-macro */
-
-#define BOX( type, pic, help_beg, help_end ) \
-{ \
- mitkIpInt4_t i, j, l; \
- mitkIpUInt4_t offset; \
- mitkIpInt4_t end_x, end_y; \
- mitkIpBool_t found; \
- \
- for ( l = 0; l < (mitkIpInt4_t) pic->dim; l++ ) \
- { \
- i = 0; \
- found = mitkIpFalse; \
- end_y = pic->n[order[l*pic->dim+1]]; \
- while (( i < end_y ) && ( !found ) ) \
- { \
- j = 0; \
- end_x = pic->n[order[l*pic->dim]]; \
- while (( j < end_x ) && ( !found ) ) \
- { \
- offset = j * size[order[l * pic->dim]] + \
- i * size[order[l * pic->dim + 1]]; \
- if ( (( type * )pic->data )[ offset ] ) \
- { \
- found = mitkIpTrue; \
- help_beg[1-l] = i; \
- } \
- j++; \
- } \
- i++; \
- } \
- \
- i = pic->n[order[l*pic->dim+1]] -1; \
- found = mitkIpFalse; \
- while (( i >= 0 ) && ( !found ) ) \
- { \
- j = pic->n[order[l*pic->dim]] -1; \
- while (( j >= 0 ) && ( !found ) ) \
- { \
- offset = j * size[order[l * pic->dim]] + \
- i * size[order[l * pic->dim + 1]]; \
- if ( (( type * )pic->data )[ offset ] ) \
- { \
- found = mitkIpTrue; \
- help_end[1-l] = i; \
- } \
- j--; \
- } \
- i--; \
- } \
- } \
- \
- \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpUInt4_t _mitkIpFuncBox2d ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t **beg,
- mitkIpUInt4_t **end )
-{
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* size of each direction */
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t *help_beg, *help_end;
- mitkIpUInt4_t order[] = { 0, 1,
- 1, 0 };
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( pic_old->dim > 2 ) /* just in for the first version */
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialization of vectors */
-
- size[0] = 1;
- for ( i = 1; i < pic_old->dim; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
-
- /* allocation of result vectors */
-
- *beg = ( mitkIpUInt4_t * ) malloc ( pic_old->dim * sizeof ( mitkIpUInt4_t ) );
- help_beg = *beg;
- *end = ( mitkIpUInt4_t * ) malloc ( pic_old->dim * sizeof ( mitkIpUInt4_t ) );
- help_end = *end;
-
- mitkIpPicFORALL_2 ( BOX, pic_old, help_beg, help_end );
-
- return ( mitkIpFuncOK );
-}
diff --git a/Utilities/IpFunc/Box3d.c b/Utilities/IpFunc/Box3d.c
deleted file mode 100644
index 30eb31558f..0000000000
--- a/Utilities/IpFunc/Box3d.c
+++ /dev/null
@@ -1,186 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
- * _mitkIpFuncBox3d
- *---------------------------------------------------------------------
- * DESCRIPTION
- * This Function calulates the bounding box
- *
- * FUNCTION DECLARATION
- *
- * PARAMETERS
- * pic_old - binary image: contains the region of interest
- * beg - pointer to left upper corner
- * end - pointer to right lower corner
- *
- * RETURN VALUES
- * mitkIpFuncOK - no error occured
- * mitkIpFuncERROR - error occured (description of error in mitkIpFuncErrno)
- *
- * UPDATES
- * this version could only be used for 3D images, in later version
- * it should be possible to use it for every dimension
- *
- * AUTHOR & DATE
- * Antje Schroeder 08.01.97
- *
- *---------------------------------------------------------------------
- */
-/* include Files */
-
-#include "mitkIpFuncP.h"
-
-/* definition of Box-macro */
-
-#define BOX3( type, pic, help_beg, help_end, n, size ) \
-{ \
- mitkIpUInt4_t offset1, offset2; \
- \
- for ( l = 0; l < pic->dim; l++ ) \
- { \
- n[l] = pic->n[l]; \
- } \
- \
- for ( l = 0; l < pic->dim; l++ ) \
- { \
- stop = mitkIpFalse; \
- stop_beg = mitkIpFalse; \
- stop_end = mitkIpFalse; \
- k = 0; \
- while ( k < n[order[2+pic_old->dim*l]] && ( !stop ) ) \
- { \
- j = 0; \
- while ( j < n[order[1+pic_old->dim*l]] && ( !stop ) ) \
- { \
- i = 0; \
- while ( i < n[order[pic_old->dim*l]] && ( !stop ) ) \
- { \
- offset1 = i * size[order[0+pic_old->dim*l]] + \
- j * size[order[1+pic_old->dim*l]] + \
- k * size[order[2+pic_old->dim*l]]; \
- \
- offset2 = ( n[order[0+pic_old->dim*l]] - i - 1 ) * \
- size[order[0+pic_old->dim*l]] + \
- ( n[order[1+pic_old->dim*l]] - j - 1 ) * \
- size[order[1+pic_old->dim*l]] + \
- ( n[order[2+pic_old->dim*l]] - k - 1 ) * \
- size[order[2+pic_old->dim*l]]; \
- \
- if ( ( stop_beg == mitkIpFalse ) && \
- ( ( type * )pic->data )[offset1] ) \
- { \
- help_beg[order[2+pic->dim*l]] = k; \
- stop_beg = mitkIpTrue; \
- } \
- if ( ( stop_end == mitkIpFalse ) && \
- ( ( type * )pic->data )[offset2] ) \
- { \
- help_end[order[2+pic->dim*l]] = \
- n[order[2+pic->dim*l]] - k; \
- stop_end = mitkIpTrue; \
- } \
- if ( stop_beg && stop_end ) stop = mitkIpTrue; \
- i++; \
- } \
- j++; \
- } \
- k++; \
- } \
- } \
- \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpUInt4_t _mitkIpFuncBox3d ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t **beg,
- mitkIpUInt4_t **end )
-{
-
- mitkIpUInt4_t n[_mitkIpPicNDIM]; /* number of pixels in each */
- /* dimension */
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* size of each direction */
- mitkIpUInt4_t i, j, k, l; /* loop index */
- mitkIpUInt4_t order[] = { 0, 1, 2, /* order of indizes for each */
- 2, 1, 0, /* direction */
- 0, 2, 1 };
- mitkIpBool_t stop, stop_beg, stop_end;/* finish calculation? */
- mitkIpUInt4_t *help_beg, *help_end;
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( pic_old->dim > 3 ) /* just in for the first version */
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialisation of vectors */
-
- size[0] = 1;
- n[0] = pic_old->n[0];
- for ( i = 1; i < pic_old->dim; i++ )
- {
- n[i] = pic_old->n[i];
- size[i] = size[i-1] * pic_old->n[i-1];
- }
-
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- n[i] = 1;
-
- /* allocation of result vectors */
-
- *beg = ( mitkIpUInt4_t * ) malloc ( pic_old->dim * sizeof ( mitkIpUInt4_t ) );
- help_beg = *beg;
- *end = ( mitkIpUInt4_t * ) malloc ( pic_old->dim * sizeof ( mitkIpUInt4_t ) );
- help_end = *end;
-
- mitkIpPicFORALL_4 ( BOX3, pic_old, help_beg, help_end, n, size );
-
- return ( mitkIpFuncOK );
-}
diff --git a/Utilities/IpFunc/CMakeLists.txt b/Utilities/IpFunc/CMakeLists.txt
deleted file mode 100644
index ba6d890100..0000000000
--- a/Utilities/IpFunc/CMakeLists.txt
+++ /dev/null
@@ -1,15 +0,0 @@
-set(_options NO_INIT GCC_DEFAULT_VISIBILITY)
-if(MITK_WIN32_FORCE_STATIC)
- list(APPEND _options FORCE_STATIC)
-endif()
-
-mitk_create_module(
- DEPENDS PUBLIC MitkIpPic
- ${_options}
- C_MODULE
- WARNINGS_NO_ERRORS
-)
-
-if(UNIX)
- target_link_libraries(${MODULE_TARGET} PRIVATE m)
-endif(UNIX)
diff --git a/Utilities/IpFunc/Canny.c b/Utilities/IpFunc/Canny.c
deleted file mode 100644
index 8f33cf1c42..0000000000
--- a/Utilities/IpFunc/Canny.c
+++ /dev/null
@@ -1,525 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * this function performs an edge detection using the Canny operator
- */
-
-/** @brief performs an edge detection using the Canny operator.
- *
- * The Canny-operator needs quite a lot memory. This can cause problems
- * with large images.
- *
- * @param pic_old pointer to original image
- * @param dim_mask dimension of mask
- * @param len_mask length of filtering mask
- * @param threshold threshold to decide whether an edge belongs to
- * the image or not
- * @param border tells how the edge is transformed
- *
- * @arg @c mitkIpFuncBorderOld : original greyvalues
- * @arg @c mitkIpFuncBorderZero : edge is set to minimal greyvalue
- *
- * @return pointer to transformed iamge ( of type mitkIpFloat8_t )
- *
- * AUTHOR & DATE
-
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncCanny( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpUInt4_t len_mask,
- mitkIpFloat8_t threshold,
- mitkIpFuncFlagI_t border ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncCanny\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-/* definition of macros */
-
-#define CANNY0( type_o, pic_old, pic_help1, pic_help2, pic_help3, m ) \
-{ \
- mitkIpPicFORALL_5( CANNY1, pic_help1, pic_old, pic_help2, pic_help3, m, type_o );\
-}
-
-#define CANNY1( type_h, pic_help1, pic_old, pic_help2, pic_help3, m, type_o )\
-{ \
- mitkIpUInt4_t i, j; /* loop index */ \
- mitkIpUInt4_t len_m; \
- mitkIpInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* offset vector */ \
- mitkIpUInt4_t off_m; /* offset in mask */ \
- mitkIpFloat8_t help[_mitkIpPicNDIM]; \
- mitkIpFloat8_t help2; \
- \
- \
- /* transformation of image */ \
- \
- len_m = m->length / dim_mask; \
- for ( ind[7] = beg[7]; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = ind[7] * size[7]; \
- for ( ind[6] = beg[6]; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = ind[6] * size[6] + off[7]; \
- for ( ind[5] = beg[5]; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = ind[5] * size[5] + off[6]; \
- for ( ind[4] = beg[4]; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = ind[4] * size[4] + off[5]; \
- for ( ind[3] = beg[3]; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = ind[3] * size[3] + off[4]; \
- for ( ind[2] = beg[2]; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = ind[2] * size[2] + off[3]; \
- for ( ind[1] = beg[1]; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = ind[1] * size[1] + off[2]; \
- off[0] = beg[0] + off[1]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- for ( i = 0; i < dim_mask; i++ ) help[i] = 0; \
- off_m = 0; \
- for ( i = 0; i < dim_mask; i++ ) \
- for ( j = 0; j < len_m; j++ ) \
- { \
- help[i] = ( mitkIpFloat8_t )m->mask_vekt[off_m] * \
- (( type_o * ) pic_old->data ) \
- [off[0]+m->off_vekt[off_m]] + help[i];\
- off_m++; \
- } \
- help2 = 0; \
- for ( i = 0; i < dim_mask; i++ ) \
- { \
- (( type_h * )pic_help1->data )[off[0]+off_p[i]] = \
- ( type_h ) help[i];\
- help2 = help2 + help[i] * help[i]; \
- } \
- (( type_h * ) pic_help2->data )[off[0]] = \
- ( type_h ) help2; \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-
-#define CANNY2( type_h, pic_help2, pic_help3, pic_help1, m ) \
-{ \
- mitkIpUInt4_t i, j; /* loop index */ \
- mitkIpUInt4_t len_m; \
- mitkIpInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* offset vector */ \
- mitkIpUInt4_t off_m; /* offset in mask */ \
- mitkIpFloat8_t help[_mitkIpPicNDIM]; \
- mitkIpFloat8_t help2; \
- \
- \
- /* transformation of image */ \
- \
- len_m = m->length / dim_mask; \
- for ( ind[7] = beg[7]; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = ind[7] * size[7]; \
- for ( ind[6] = beg[6]; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = ind[6] * size[6] + off[7]; \
- for ( ind[5] = beg[5]; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = ind[5] * size[5] + off[6]; \
- for ( ind[4] = beg[4]; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = ind[4] * size[4] + off[5]; \
- for ( ind[3] = beg[3]; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = ind[3] * size[3] + off[4]; \
- for ( ind[2] = beg[2]; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = ind[2] * size[2] + off[3]; \
- for ( ind[1] = beg[1]; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = ind[1] * size[1] + off[2]; \
- off[0] = beg[0] + off[1]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- for ( i = 0; i < dim_mask; i++ ) help[i] = 0; \
- off_m = 0; \
- for ( i = 0; i < dim_mask; i++ ) \
- for ( j = 0; j < len_m; j++ ) \
- { \
- help[i] = help[i] + ( mitkIpFloat8_t )m->mask_vekt[off_m] *\
- (( type_h * ) pic_help2->data ) \
- [off[0]+m->off_vekt[off_m]];\
- off_m++; \
- } \
- help2 = 0; \
- for ( i = 0; i < dim_mask; i++ ) \
- { \
- help2 = help[i] * (( type_h * )pic_help1->data ) \
- [off[0]+ off_p[i]] + help2;\
- } \
- (( type_h * ) pic_help3->data )[off[0]] = ( type_h )help2;\
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-
-#define CANNY3( type_h, pic_help2, pic_help3, threshold ) \
-{ \
- mitkIpUInt4_t i; /* loop variable */ \
- mitkIpUInt4_t no_elem; /* number of pixels */ \
- \
- no_elem = _mitkIpPicElements ( pic_help2 ); \
- for ( i = 0; i < no_elem; i++ ) \
- (( type_h * )pic_help3->data )[i] = \
- ( ( (( type_h * ) pic_help3->data )[i] != 0 ) && \
- ( (( type_h * ) pic_help2->data )[i] > threshold ) ) ? \
- 1 : 0; \
-}
-
-/* ----------------------------------------------------------------- */
-/*
-** mitkIpFuncCanny
-*/
-/* ----------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncCanny( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpUInt4_t len_mask,
- mitkIpFloat8_t threshold,
- mitkIpFuncFlagI_t border )
-{
- #include "gradient.h"
-
- mitkIpPicDescriptor *pic_help1; /* pointer to image */
- mitkIpPicDescriptor *pic_help2; /* pointer to image */
- mitkIpPicDescriptor *pic_help3; /* pointer to image */
- mitkIpPicDescriptor *pic_help4; /* pointer to image */
- mitkIpPicDescriptor *pic_new; /* pointer to image */
- mitkIpPicDescriptor *pic_mask; /* sobel mask */
- mitkIpUInt4_t pos; /* position in m->off_vekt */
- mitkIpUInt4_t i, j; /* loopindex */
- mitkIpUInt4_t off_mask; /* loopindex */
- mitkIpFuncMasc_t *m; /* compressed mask */
- mitkIpInt4_t offset;
- mitkIpInt4_t beg[_mitkIpPicNDIM];
- mitkIpInt4_t end[_mitkIpPicNDIM];
- mitkIpInt4_t ind[_mitkIpPicNDIM];
- mitkIpUInt4_t size[_mitkIpPicNDIM];
- mitkIpInt4_t n[_mitkIpPicNDIM];
- mitkIpUInt4_t off_p[_mitkIpPicNDIM]; /* offsets to calculate help1 */
- mitkIpUInt4_t offset_h; /* offset in pic_help1 */
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( ( dim_mask < 1 ) || ( dim_mask > 4 ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_old->dim < dim_mask )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialisation of pic_mask */
-
- pic_mask = mitkIpPicNew ();
- if ( pic_mask == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- pic_mask->type = mitkIpPicInt;
- pic_mask->bpe = 16;
- pic_mask->dim = dim_mask+1;
- for ( i = 0; i < dim_mask; i++ )
- pic_mask->n[i] = 3;
- pic_mask->n[dim_mask] = dim_mask;
-
- if ( dim_mask == 4 )
- pic_mask->data = mask4;
- else if ( dim_mask == 3 )
- pic_mask->data = mask3;
- else if ( dim_mask == 2 )
- pic_mask->data = mask2;
-
- /* initialisation of vectors */
-
- size [0] = 1;
- for ( i = 1; i < pic_old->dim; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- size[i] = 0;
-
- offset_h = size[pic_old->dim-1] * pic_old->n[pic_old->dim-1];
-
- for ( i = 0; i < dim_mask; i++ )
- n[i] = pic_mask->n[i] / 2 + 1;
- for ( i = dim_mask; i < _mitkIpPicNDIM; i++ )
- n[i] = 0;
-
- for ( i = 0; i < dim_mask; i++ )
- {
- end[i] = pic_old->n[i] - pic_mask->n[i] / 2;
- beg[i] = ( ( pic_mask->n[i] % 2 ) == 1 ) ?
- ( pic_mask->n[i] / 2 ) : ( pic_mask->n[i] / 2 - 1 );
- off_p[i] = i * offset_h;
- }
- for ( i = dim_mask; i < _mitkIpPicNDIM; i++ )
- beg[i] = 0;
-
- for ( i = dim_mask; i < pic_old->dim; i++ )
- end[i] = pic_old->n[i];
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- end[i] = beg[i] + 1;
-
- /* create a new picture, copy the header, allocate memory */
-
- pic_help2 = mitkIpPicCopyHeader ( pic_old, NULL );
- if ( pic_help2 == NULL )
- {
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask);
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( pic_old->type == mitkIpPicUInt || pic_old->type == mitkIpPicInt )
- {
- pic_help2->type = mitkIpPicFloat;
- pic_help2->bpe = 64;
- }
- pic_help2->data = calloc ( _mitkIpPicElements ( pic_help2 ), pic_help2->bpe / 8 );
- if ( pic_help2->data == NULL )
- {
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask);
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- pic_help1 = mitkIpPicCopyHeader ( pic_help2, NULL );
- if ( pic_help1 == NULL )
- {
- pic_help2->data = NULL;
- mitkIpPicFree ( pic_help2);
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask);
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- pic_help1->dim = pic_help2->dim + 1;
- pic_help1->n[pic_help1->dim-1] = dim_mask;
- pic_help1->data = calloc ( _mitkIpPicElements ( pic_help1 ), pic_help1->bpe / 8 );
- if ( pic_help1->data == NULL )
- {
- pic_help2->data = NULL;
- mitkIpPicFree ( pic_help2);
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask);
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- pic_help3 = mitkIpPicCopyHeader ( pic_help2, NULL );
- if ( pic_help3 == NULL )
- {
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- pic_help1->data = NULL;
- mitkIpPicFree ( pic_help1 );
- pic_help2->data = NULL;
- mitkIpPicFree ( pic_help2 );
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- pic_help3->data = calloc ( _mitkIpPicElements ( pic_help3 ), pic_help3->bpe / 8 );
- if ( pic_help3->data == NULL )
- {
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- pic_help1->data = NULL;
- mitkIpPicFree ( pic_help1 );
- pic_help2->data = NULL;
- mitkIpPicFree ( pic_help2 );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate mask-structure */
-
- m = malloc ( sizeof ( mitkIpFuncMasc_t ) );
- if ( m == NULL )
- {
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- pic_help1->data = NULL;
- mitkIpPicFree ( pic_help1 );
- pic_help2->data = NULL;
- mitkIpPicFree ( pic_help2 );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- m->off_vekt = malloc ( _mitkIpPicElements( pic_mask ) * sizeof ( mitkIpInt4_t ) );
- if ( m->off_vekt == NULL )
- {
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- pic_help1->data = NULL;
- mitkIpPicFree ( pic_help1 );
- pic_help2->data = NULL;
- mitkIpPicFree ( pic_help2 );
- pic_help3->data = NULL;
- mitkIpPicFree ( pic_help3 );
- free ( m );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- m->mask_vekt = malloc ( _mitkIpPicElements( pic_mask ) * sizeof ( mitkIpFloat8_t ) );
- if ( m->mask_vekt == NULL )
- {
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- pic_help1->data = NULL;
- mitkIpPicFree ( pic_help1 );
- pic_help2->data = NULL;
- mitkIpPicFree ( pic_help2 );
- pic_help3->data = NULL;
- mitkIpPicFree ( pic_help3 );
- free ( m->off_vekt );
- free ( m );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* calculate offset vector for the compressed mask */
-
- m->length = 0;
-
- off_mask = 0;
- for ( i = 0; i < pic_mask->n[dim_mask] ; i++ )
- for ( ind[3] = -1; ind[3] < n[3]; ind[3]++ )
- for ( ind[2] = -1; ind[2] < n[2]; ind[2]++ )
- for ( ind[1] = -1; ind[1] < n[1]; ind[1]++ )
- for ( ind[0] = -1; ind[0] < n[0]; ind[0]++ )
- {
- if ( (( mitkIpInt2_t * )pic_mask->data)[off_mask] != 0 )
- {
- offset = 0;
- for ( j = 0; j < dim_mask; j++ )
- offset = offset + ind[j] * size[j];
- m->off_vekt[m->length] = offset;
- m->length++;
- }
- off_mask++;
- }
-
- /* remove elements that are zero from mask */
-
- pos = 0;
- for ( i = 0; i < m->length; i++ )
- {
- while ( (( mitkIpInt2_t * )pic_mask->data)[pos] == 0 ) pos++;
- m->mask_vekt[i] = ( mitkIpFloat8_t )(( mitkIpInt2_t * )pic_mask->data)[pos];
- pos++;
- }
-
- /* smooth image using a binomial filter */
-
- pic_new = mitkIpFuncGausF ( pic_old, len_mask, dim_mask, border );
-
- /* calculate second derivation */
-
- mitkIpPicFORALL_4 ( CANNY0, pic_new, pic_help1, pic_help2, pic_help3, m );
- /* project second derivation to gradient */
-
- mitkIpPicFORALL_3 ( CANNY2, pic_help2, pic_help3, pic_help1, m );
-
- /* zero crossing */
-
- pic_help4 = mitkIpFuncZeroCr ( pic_help3 );
-
- mitkIpPicFORALL_2 ( CANNY3, pic_help2, pic_help4, threshold );
-
- /* free memory */
-
- free ( m->off_vekt );
- free ( m->mask_vekt );
- free ( m );
- mitkIpPicFree ( pic_new );
- mitkIpPicFree ( pic_help1 );
- mitkIpPicFree ( pic_help2 );
- mitkIpPicFree ( pic_help3 );
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_help4, pic_old);
-
- return ( pic_help4 );
-}
-
-#endif
diff --git a/Utilities/IpFunc/Close.c b/Utilities/IpFunc/Close.c
deleted file mode 100644
index db15b68a35..0000000000
--- a/Utilities/IpFunc/Close.c
+++ /dev/null
@@ -1,95 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * this function performs the morphological closing operation
- */
-
-/** @brief performs the morphological closing operation
- *
- * Closing is a dilation followed by an erosion.
- *
- * @param pic_old pointer to the original image
- * @param mask pointer to the kernel
- * @param border tells how the edge is transformed
- *
- * @arg @c mitkIpFuncBorderOld : original greyvalues
- * @arg @c mitkIpFuncBorderZero : edge is set to zero
- *
- * @return pointer to transformed iamge
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncClose ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-mitkIpPicDescriptor *mitkIpFuncClose ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border )
-{
- mitkIpPicDescriptor *pic_new;
-
- pic_new = _mitkIpFuncOpCl ( pic_old, pic_mask, mitkIpFuncCloseF, border );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
-
- return ( pic_new );
-}
-
-#endif
-
diff --git a/Utilities/IpFunc/CompressM.c b/Utilities/IpFunc/CompressM.c
deleted file mode 100644
index d2d0db9532..0000000000
--- a/Utilities/IpFunc/CompressM.c
+++ /dev/null
@@ -1,231 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
- /**@file
- * this function removes all elements which are zero and
- * calculates the offsets of the non-zero elements
- * which are nonzero
- */
-/** @brief removes all elements which are zero from the mask and
- * calculates the offsets (relative to the actual pixel) for all elements
- * which are nonzero
- *
- * @param mask pointer to mask structure
- * @param pic_old pointer to original image
- * @param kind tells whether mask should be reflected
- * @arg @c mitkIpNOREFLECT : original mask is used
- * @arg @c mitkIpREFLECT : reflected mask is used
- * @param beg pixel number where convolution begins ( return value )
- * @param end pixel number where convolution ends ( return value )
- *
- * @return m pointer to compressed mask structure
- *
- *
- * AUTHOR & DATE
- */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFuncMasc_t *_mitkIpFuncCompressM ( mitkIpPicDescriptor *mask,
- mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t kind,
- mitkIpInt4_t beg[_mitkIpPicNDIM],
- mitkIpInt4_t end[_mitkIpPicNDIM] ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncCompressM\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-
-#define OFF_M( type, pic_mask, pic, beg, size, m, kind ) \
-{ \
- mitkIpUInt4_t i; /* loop index */ \
- mitkIpUInt4_t pos; /* */ \
- mitkIpInt4_t off_mask; /* offset for mask elements */ \
- mitkIpInt4_t offset; /* offset for picture elements */ \
- mitkIpInt4_t incr; \
- mitkIpUInt4_t size_m[_mitkIpPicNDIM]; \
- mitkIpInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpInt4_t ind_m[_mitkIpPicNDIM]; /* loop index vector */ \
- \
- /* initialization of vectors */ \
- \
- size_m[0] = 1; \
- size[0] = 1; \
- for ( i = 1; i < _mitkIpPicNDIM; i++ ) \
- { \
- size_m[i] = size_m[i-1] * pic_mask->n[i-1]; \
- size[i] = size[i-1] * pic->n[i-1]; \
- } \
- \
- /* calculate offsets from actual pixel for each mask element */ \
- \
- if ( kind == mitkIpFuncNoReflect ) \
- { \
- off_mask = 0; \
- incr = 1; \
- } \
- else if ( kind == mitkIpFuncReflect ) \
- { \
- off_mask = size_m[pic_mask->dim] -1; \
- incr = -1; \
- } \
- else return ( mitkIpFuncERROR ); \
- \
- m->length = 0; \
- \
- for ( ind[7] = 0, ind_m[7] = -beg[7]; ind[7] < pic_mask->n[7]; \
- ind[7]++, ind_m[7]++ ) \
- for ( ind[6] = 0, ind_m[6] = -beg[6]; ind[6] < pic_mask->n[6]; \
- ind[6]++, ind_m[6]++ ) \
- for ( ind[5] = 0, ind_m[5] = -beg[5]; ind[5] < pic_mask->n[5]; \
- ind[5]++, ind_m[5]++ ) \
- for ( ind[4] = 0, ind_m[4] = -beg[4]; ind[4] < pic_mask->n[4]; \
- ind[4]++, ind_m[4]++ ) \
- for ( ind[3] = 0, ind_m[3] = -beg[3]; ind[3] < pic_mask->n[3]; \
- ind[3]++, ind_m[3]++ ) \
- for ( ind[2] = 0, ind_m[2] = -beg[2]; \
- ind[2] < pic_mask->n[2]; ind[2]++, ind_m[2]++ ) \
- for ( ind[1] = 0, ind_m[1] = -beg[1]; \
- ind[1] < pic_mask->n[1]; ind[1]++, ind_m[1]++ ) \
- for ( ind[0] = 0, ind_m[0] = -beg[0]; \
- ind[0] < pic_mask->n[0]; ind[0]++, ind_m[0]++ ) \
- { \
- if ( (( type * )pic_mask->data )[off_mask] != 0 ) \
- { \
- offset = 0; \
- for ( i = 0; i < pic_mask->dim; i++ ) \
- offset = offset + ind_m[i] * size[i]; \
- \
- m->off_vekt[m->length] = offset; \
- m->length++; \
- } \
- off_mask = off_mask + incr; \
- } \
- \
- /* remove elements that are zero from mask */ \
- \
- pos = 0; \
- for ( i = 0; i < m->length; i++ ) \
- { \
- while ( (( type * )pic_mask->data )[pos] == 0 ) pos++; \
- m->mask_vekt[i] = ( mitkIpFloat8_t ) (( type * )pic_mask->data )[pos]; \
- pos++; \
- } \
- \
-}
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpFuncMasc_t *_mitkIpFuncCompressM ( mitkIpPicDescriptor *mask,
- mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t kind,
- mitkIpInt4_t beg[_mitkIpPicNDIM],
- mitkIpInt4_t end[_mitkIpPicNDIM] )
-{
- mitkIpUInt4_t i; /* loop index */
- mitkIpFuncMasc_t *m; /* length of mask and offsets */
- mitkIpUInt4_t size[_mitkIpPicNDIM];
-
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( mask ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* initialization of vectors */
-
- for ( i = 0; i < mask->dim; i++ )
- {
- end[i] = pic_old->n[i] - mask->n[i] / 2;
- beg[i] = ( ( mask->n[i] % 2 ) == 1 ) ?
- ( mask->n[i] / 2 ) : ( mask->n[i] / 2 - 1 );
- }
-
- for ( i = mask->dim; i < _mitkIpPicNDIM; i++ )
- {
- beg[i] = 0;
- mask->n[i] = 1;
- }
-
- for ( i = mask->dim; i < pic_old->dim; i++ )
- end[i] = pic_old->n[i];
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- end[i] = beg[i] + 1;
-
- /* allocate mask structure */
-
- m = malloc ( sizeof ( mitkIpFuncMasc_t ) );
- if ( m == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- m->off_vekt = malloc ( _mitkIpPicElements( mask ) * sizeof ( mitkIpInt4_t ) );
- if ( m->off_vekt == NULL )
- {
- free ( m );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- m->mask_vekt = malloc ( _mitkIpPicElements( mask ) * sizeof ( mitkIpFloat8_t ) );
- if ( m->mask_vekt == NULL )
- {
- free ( m->off_vekt );
- free ( m );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to compress mask (for all data types) */
-
- mitkIpPicFORALL_5 ( OFF_M, mask, pic_old, beg, size, m, kind );
-
- return ( m );
-
-}
-#endif
diff --git a/Utilities/IpFunc/Conv.c b/Utilities/IpFunc/Conv.c
deleted file mode 100644
index 199fdddc76..0000000000
--- a/Utilities/IpFunc/Conv.c
+++ /dev/null
@@ -1,236 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * this function convolves an image with a mask
- */
-
-/** this function convolves an image with a mask
- * @param pic_old pointer to the image that should be convolved
- * @param mask pointer to the mask that is used for convolution
- * @param border tells how the edge is transformed
- * @arg @c mitkIpFuncFlagBorderOld : original greyvalues
- * @arg @c mitkIpFuncFlagBorderZero : edge is set to minimal greyvalue
- *
- * @return pointer to the convolved image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncConv( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncConv\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of macros */
-
-#define CONV( typ, pic, size, mask, beg, end, m) \
-{ \
- mitkIpInt4_t ind[_mitkIpPicNDIM]; \
- mitkIpInt4_t off[_mitkIpPicNDIM]; \
- mitkIpUInt4_t i; \
- mitkIpInt4_t offset; \
- mitkIpFloat8_t help, min_gv, max_gv; \
- typ *data, *data_new; \
- \
- /* calculate max. and min. possible greyvalues */ \
- \
- _mitkIpFuncExtT ( pic->type, pic->bpe, &min_gv, &max_gv ); \
- data = pic->data; \
- data_new = pic_new->data; \
- \
- /* convolve image with compressed mask */ \
- \
- for ( ind[7] = beg[7]; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = beg[6]; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = beg[5]; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = beg[4]; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = beg[3]; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = beg[2]; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = beg[1]; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = size[1] * ind[1] + off[2]; \
- offset = off[1] + beg[0]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- \
- /* calculate new greyvalue */ \
- \
- help = 0; \
- for ( i = 0; i < m->length; i++ ) \
- help = help + m->mask_vekt[i] * \
- data[offset + m->off_vekt[i]]; \
- \
- data_new[offset] = \
- ( help < max_gv )? \
- ( ( help < min_gv ) ? ( typ )min_gv : help ) : \
- ( typ ) max_gv; \
- /* \
- help = help + m->mask_vekt[i] * \
- (( typ * )pic->data)[offset + m->off_vekt[i]]; \
- \
- (( typ * )pic_new->data )[offset] = \
- ( help < max_gv )? \
- ( ( help < min_gv ) ? ( typ )min_gv : help ) : \
- ( typ ) max_gv; \
- */ \
- offset++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncConv( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border )
-{
-
- mitkIpPicDescriptor *pic_new; /* convolved image */
- mitkIpUInt4_t i; /* loopindex */
- mitkIpInt4_t beg[_mitkIpPicNDIM];
- mitkIpInt4_t end[_mitkIpPicNDIM];
- mitkIpFuncMasc_t *m; /* length of mask and offsets */
- mitkIpUInt4_t size[_mitkIpPicNDIM];
-
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( pic_mask ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( ( pic_mask->dim > pic_old->dim ) || ( pic_mask->dim < 1 ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- for ( i = 0; i < pic_old->dim; i++ )
- {
- if ( pic_mask->n[i] > pic_old->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
-
- /* create a new picture, copy the header, allocate memory */
-
- if ( border == mitkIpFuncBorderOld )
- {
- /*pic_new = _mitkIpFuncBorder ( pic_old, pic_mask, mitkIpFuncBorderOld );*/
- pic_new = mitkIpPicClone ( pic_old );
- }
- else if ( border == mitkIpFuncBorderZero )
- {
- /* pic_new = _mitkIpFuncBorder ( pic_old, pic_mask, mitkIpFuncBorderZero ); */
- pic_new = mitkIpPicCopyHeader ( pic_old, 0 );
- pic_new->data = calloc ( _mitkIpPicElements ( pic_new ), pic_new->bpe/8 );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialize vectors */
-
- size[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ ) size[i] = size[i-1] * pic_old->n[i-1];
-
- /* compress mask */
-
- m = _mitkIpFuncCompressM ( pic_mask, pic_old, mitkIpFuncReflect, beg, end );
- if ( m == NULL ) return ( mitkIpFuncERROR );
-
- /* macro to convolve an image (for all data types) */
-
- mitkIpPicFORALL_5 ( CONV, pic_old, size, pic_mask, beg, end, m );
- /* free memory */
-
- free ( m->off_vekt );
- free ( m->mask_vekt );
- free ( m );
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/Convert.c b/Utilities/IpFunc/Convert.c
deleted file mode 100644
index c022f51687..0000000000
--- a/Utilities/IpFunc/Convert.c
+++ /dev/null
@@ -1,196 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/** @file
- * this function converts one image to an image of another data type
- * (at the moment only datatype mitkIpUInt1_t, mitkIpInt2_t, mitkIpFloat8_t ) are
- * supported.
- */
-
- /** this function converts one image to an image of another data type
- * (at the moment only datatype mitkIpUInt1_t, mitkIpInt2_t, mitkIpFloat8_t ) are
- * supported.
- *
- * @param pic_old pointer to input image
- * @param type image data type
- * 3 mitkIpPicInt
- * 4 mitkIpPicUInt
- * 5 mitkIpPicFloat
- * @param bpe bits per element representing on pixel
- *
- * qreturn pointer to converted image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-
-mitkIpPicDescriptor *mitkIpFuncConvert ( mitkIpPicDescriptor *pic_old,
- mitkIpPicType_t type,
- mitkIpUInt4_t bpe );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncConvert\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-/* definition of macros */
-
-#define CONV_1( type_old, pic_old, pic_new, min_gv, max_gv ) \
-{ \
- mitkIpPicFORALL_4( CONV_2, pic_new, pic_old, type_old, min_gv, max_gv ) \
-}
-
-#define CONV_3( type_old, pic_old, pic_new ) \
-{ \
- mitkIpPicFORALL_2( CONV_4, pic_new, pic_old, type_old ) \
-}
-
-
-#define CONV_4( type_new, pic_new, pic_old, type_old ) \
-{ \
- size_t i; \
- size_t no_elem; \
- \
- no_elem = _mitkIpPicElements ( pic_old ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type_new * ) pic_new->data ) [i] = ( type_new ) \
- (( type_old * ) pic_old->data ) [i]; \
- } \
-}
-
-#define CONV_2( type_new, pic_new, pic_old, type_old, min_gv, max_gv ) \
-{ \
- size_t i; \
- size_t no_elem; \
- type_old help; \
- \
- no_elem = _mitkIpPicElements ( pic_new ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help = (( type_old * ) pic_old->data ) [i]; \
- (( type_new * ) pic_new->data ) [i] = \
- ( max_gv > ( mitkIpFloat8_t ) help ) ? \
- ( min_gv < ( mitkIpFloat8_t ) help ? \
- ( type_new )help : ( type_new ) min_gv ) : \
- ( type_new ) max_gv; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncConvert ( mitkIpPicDescriptor *pic_old,
- mitkIpPicType_t type,
- mitkIpUInt4_t bpe )
-
-{
- mitkIpFloat8_t min, max; /* extreme greyvalues of 1. image */
- mitkIpFloat8_t max_gv;
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
-
-
- /* ckeck whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( ! ( ( type == mitkIpPicFloat && ( bpe == 32 || bpe == 64 ) ) ||
- ( type == mitkIpPicUInt && ( bpe == 8 || bpe == 16 || bpe == 32 ) ) ||
- ( type == mitkIpPicInt && ( bpe == 8 || bpe == 16 || bpe == 32 ) ) ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* calculate max. and min. possible greyvalues for output image */
-
- if ( _mitkIpFuncExtT ( type, bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* calculate extreme greyvalues in input image */
-
- if ( mitkIpFuncExtr ( pic_old, &min, &max ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* allocate output image */
-
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- pic_new->type = type;
- pic_new->bpe = bpe;
-
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to convert the picture (for all data types) */
-
- if ( ( min < min_gv ) || ( max > max_gv ) )
- mitkIpPicFORALL_3 ( CONV_1, pic_old, pic_new, min_gv, max_gv )
- else
- mitkIpPicFORALL_1 ( CONV_3, pic_old, pic_new )
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/CopyTags.c b/Utilities/IpFunc/CopyTags.c
deleted file mode 100644
index fdbd9c6648..0000000000
--- a/Utilities/IpFunc/CopyTags.c
+++ /dev/null
@@ -1,66 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * this function copies the tags of one image to another
- */
-
-/** @brief copies the tags of one image to another
- * @param pic_new pointer to the destination image
- * @param pic_old pointer to the source image
- *
- * @author Carlos and Ivo
- * @date 14.04.2000
- */
-
-#include "mitkIpFuncP.h"
-
-void mitkIpFuncCopyTags(mitkIpPicDescriptor *pic_new, mitkIpPicDescriptor *pic_old)
-{
- /* Copy Tags */
-
- if(pic_new!=NULL)
- {
- strncpy( pic_new->info->version, pic_old->info->version, _mitkIpPicTAGLEN );
- pic_new->info->tags_head = _mitkIpPicCloneTags( pic_old->info->tags_head );
- pic_new->info->write_protect = pic_old->info->write_protect;
- }
-}
-
diff --git a/Utilities/IpFunc/Curtosis.c b/Utilities/IpFunc/Curtosis.c
deleted file mode 100644
index fa21d63b67..0000000000
--- a/Utilities/IpFunc/Curtosis.c
+++ /dev/null
@@ -1,116 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the curtosis of all
- * greyvalues in an image
- */
-
-/** @brief calculates the curtosis of all
- * greyvalues in an image
- *
- * @param pic pointer to the image
- *
- * @return curtosis of image
- *
- * @author Steffen Gundel
- */
-
-
-/* include-files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncCurtosis ( mitkIpPicDescriptor *pic );
-
-/* definition of extreme value macro */
-
-#ifndef DOXYGEN_IGNORE
-
-/* include-files */
-
-#include "mitkIpFuncP.h"
-
-/* definition of extreme value macro */
-
-#define CURTOSIS( type, pic, mean, excess ) \
- { \
- mitkIpUInt4_t i, no_elem; \
- \
- excess = 0.; \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- excess = ( ( ( type * ) pic->data ) [i] - mean ) * \
- ( ( ( type * ) pic->data ) [i] - mean ) * \
- ( ( ( type * ) pic->data ) [i] - mean ) * \
- ( ( ( type * ) pic->data ) [i] - mean ) + \
- excess; \
- } \
- }
-
-mitkIpFloat8_t mitkIpFuncCurtosis ( mitkIpPicDescriptor *pic )
-{
-
- mitkIpFloat8_t curt;
- mitkIpFloat8_t mean, std;
-
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic ) != mitkIpOK ) return ( mitkIpFuncERROR );
-
- curt = 0.0;
- if ( _mitkIpPicElements ( pic ) != 1 )
- {
-
- mean = mitkIpFuncMean ( pic );
- std = mitkIpFuncSDev( pic );
-
- mitkIpPicFORALL_2( CURTOSIS, pic, mean, curt );
-
- curt = curt / ((( mitkIpFloat8_t )(_mitkIpPicElements ( pic ) - 1 )) *std*std*std*std) -3;
- }
-
- return( curt );
-}
-#endif
-
diff --git a/Utilities/IpFunc/CurtosisR.c b/Utilities/IpFunc/CurtosisR.c
deleted file mode 100644
index 636d385b6c..0000000000
--- a/Utilities/IpFunc/CurtosisR.c
+++ /dev/null
@@ -1,87 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the curtosis of all
- * greyvalues included by a rectangle
- */
-
-/** @brief calculates the curtosis of all
- * greyvalues included by a rectangle
- *
- * The rectangle is described by a vector with the coordinates of the
- * upper left corner and a vector of its length in each direction
- *
- * @param pic_old pointer to the image
- * @param begin vector with the beginning coordinates of the window
- * @param length vector with the length of the window in each direction
- *
- * @return curtosis in window
- *
- * @author Steffen Gundel
- */
-
-/* include-files */
-
-#include "mitkIpFuncP.h"
-
-
-/* ========================================================== */
-/*
-** function picVar : calculates the mean value (mean)
-** of an image (pic)
-*/
-/* ========================================================== */
-
-double mitkIpFuncCurtosisR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length ) {
-
- mitkIpFloat8_t var;
- mitkIpPicDescriptor *pic_help;
-
- pic_help = mitkIpFuncWindow ( pic_old, begin, length );
-
- var = mitkIpFuncCurtosis ( pic_help );
-
- mitkIpPicFree ( pic_help );
-
- return ( var );
-}
diff --git a/Utilities/IpFunc/Dila.c b/Utilities/IpFunc/Dila.c
deleted file mode 100644
index 298fea7540..0000000000
--- a/Utilities/IpFunc/Dila.c
+++ /dev/null
@@ -1,95 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
-* this function performs a dilation. If the original
- * image is a binary image each pixel is connected with the surrounding
- * pixels which are non zero in the kernel by using logical operations
- * ( and for erosion, or for dilation ). Greylevel images are transformed
- * by taking the minimum (erosion) of the surrounding pixels or the
- * maximum (dilation).
- */
-
- /** @brief performs a dilation. If the original
- * image is a binary image each pixel is connected with the surrounding
- * pixels which are non zero in the kernel by using logical operations
- * ( and for erosion, or for dilation ). Greylevel images are transformed
- * by taking the minimum (erosion) of the surrounding pixels or the
- * maximum (dilation).
- *
- * @param pic_old pointer to the original image
- * @param mask pointer to the kernel
- * @param border tells how the edge is transformed
- * @arg @c mitkIpFuncBorderOld : original greyvalues
- * @arg @c mitkIpFuncBorderZero : edge is set to zero
- *
- * @return pointer to the transformed image
- *
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncDila ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-#ifndef DOXYGEN_IGNORE
-
-mitkIpPicDescriptor *mitkIpFuncDila ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border )
-{
- mitkIpPicDescriptor *pic_new;
-
- pic_new = _mitkIpFuncMorph ( pic_old, pic_mask, mitkIpFuncDilaF, border );
- if ( border == mitkIpFuncBorderZero )
- pic_new = mitkIpFuncBorder ( pic_new, pic_mask, pic_new );
-
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
- return ( pic_new );
-}
-
-#endif
-
diff --git a/Utilities/IpFunc/DivC.c b/Utilities/IpFunc/DivC.c
deleted file mode 100644
index 94a22b32c7..0000000000
--- a/Utilities/IpFunc/DivC.c
+++ /dev/null
@@ -1,258 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
-* this function divides the greyvalues of an image by a value
-*/
-
-/** @brief divides the greyvalues of an image by a value
- *
- * @param pic_1 pointer to the first image
- * @param value constant which is multiplied to image
- * @param keep tells whether the image type could be changed when
- * necessary
- * @arg @c mitkIpFuncNoKeep : image data type could be changed
- * @arg @c mitkIpFuncKeep : image data type of original pictures is
- * kept (if there will be an over-/underflow
- * the max. or min. possible greyvalue is taken)
- * @param pic_return memory which could be used for pic_new. If
- * pic_retrun == NULL new memory is allocated
- *
- * @return pointer to the new image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncDivC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncDivC\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-
-/* definition of macros */
-
-#define DIVC( type_1, pic_1, pic_new, value ) \
-{ \
- mitkIpPicFORALL_3 ( DIVC2, pic_new, pic_1, type_1, value ); \
-} \
-
-#define DIVC2( type_n, pic_new, pic_1, type_1, value ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type_n * ) pic_new->data ) [i] = ( type_n ) \
- ( ( mitkIpFloat8_t )(( type_1 * ) pic_1->data ) [i] / value );\
- } \
-}
-
-#define DIVC3( type_n, pic_1, pic_new, value ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- mitkIpFloat8_t help; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help = ( mitkIpFloat8_t )(( type_n * ) pic_1->data ) [i]; \
- (( type_n * ) pic_new->data ) [i] = \
- ( max_gv > ( mitkIpFloat8_t ) help / value ) ? \
- (( min_gv < ( mitkIpFloat8_t ) help / value ) ? \
- ( (type_n)( help / value ) ) : ( type_n ) min_gv ) : \
- ( type_n ) max_gv; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncDivC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpFloat8_t min1, max1; /* extreme greyvalues of 1. image */
- mitkIpFloat8_t smin, smax; /* product of extreme greyvalues */
-
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* check value */
-
- if ( value == 0. ) return ( mitkIpFuncERROR );
-
- /* calculate max. and min. possible greyvalues for data type of images*/
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* find out data type of new iamge */
-
- if ( keep == mitkIpFuncKeep )
- {
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
- }
- else if ( keep == mitkIpFuncNoKeep )
- {
- /* calculate max. and min. greyvalues of both images */
-
- if ( mitkIpFuncExtr ( pic_old, &min1, &max1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- smax = max1 / value;
- smin = min1 / value;
-
- /* change image type of images of type mitkIpPicInt */
-
- if ( pic_old->type == mitkIpPicInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_old->type == mitkIpPicUInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->type = mitkIpPicInt;
- pic_new->bpe = 16;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- if ( smax > max_gv || smin < min_gv )
- {
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_old->type == mitkIpPicFloat )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( keep == mitkIpFuncNoKeep )
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
-
- /* macro to invert the picture (for all data types) */
-
- if ( keep == mitkIpFuncNoKeep )
- mitkIpPicFORALL_2 ( DIVC, pic_old, pic_new, value )
- else if ( keep == mitkIpFuncKeep )
- mitkIpPicFORALL_2 ( DIVC3, pic_old, pic_new, value )
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/DivI.c b/Utilities/IpFunc/DivI.c
deleted file mode 100644
index ad3531d50e..0000000000
--- a/Utilities/IpFunc/DivI.c
+++ /dev/null
@@ -1,295 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function divides corresponding greyvalues of two images
-*/
-
-/** this function divides corresponding greyvalues of two images
- *
- * @param pic_1 pointer to the first image
- * @param pic_2 pointer to the second image
- * @param keep tells whether the image type could be changed when
- * necessary
- * @arg @c mitkIpFuncNoKeep : image data type could be changed
- * @arg @c mitkIpFuncKeep : image data type of original pictures is
- * kept (if there will be an over-/underflow
- * the max. or min. possible greyvalue is taken)
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the new image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncDivI ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncDivI\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-
-/* definition of macros */
-
-#define DIVI( type_1, pic_1, pic_2, pic_new ) \
-{ \
- mitkIpPicFORALL_3 ( DIVI2, pic_new, pic_1, pic_2, type_1 ); \
-} \
-
-#define DIVI2( type_n, pic_new, pic_1, pic_2, type_1 ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- type_1 help2; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help2 = (( type_1 * ) pic_2->data ) [i]; \
- (( type_n * ) pic_new->data ) [i] = \
- ( help2 == ( type_1) 0 ) ? \
- ( type_1) 0 : \
- (( type_1 * ) pic_1->data ) [i] / help2; \
- } \
-}
-
-#define DIVI3( type_n, pic_1, pic_2, pic_new ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- type_n help; \
- type_n help2; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help = (( type_n * ) pic_1->data ) [i]; \
- help2 = (( type_n * ) pic_2->data ) [i]; \
- (( type_n * ) pic_new->data ) [i] = \
- ( help2 == ( type_n) 0 ) ? ( type_n) 0 : \
- (( max_gv > ( mitkIpFloat8_t ) help / ( mitkIpFloat8_t ) help2 ) ? \
- (( min_gv < ( mitkIpFloat8_t ) help / ( mitkIpFloat8_t ) help2 ) ? \
- ((type_n)help / (type_n)help2 ) : ( type_n ) min_gv ) :\
- ( type_n ) max_gv ); \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncDivI ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpUInt4_t i; /* loop index */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpFloat8_t min1, max1; /* extreme greyvalues of 1. image */
- mitkIpFloat8_t min2, max2; /* extreme greyvalues of 2. image */
- mitkIpFloat8_t smin, smax; /* product of extreme greyvalues */
- mitkIpFloat8_t min_max12; /* product of min1 and max2 */
- mitkIpFloat8_t min_max21; /* product of min2 and max1 */
-
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( pic_2 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* check whether images have the same size */
-
- if ( ( pic_1->type != pic_2->type ) || ( pic_1->bpe != pic_2->bpe ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
- if ( pic_1->dim == pic_2->dim )
- for ( i = 0; i < _mitkIpPicNDIM; i++ )
- {
- if ( pic_1->n[i] != pic_2->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
-
- /* calculate max. and min. possible greyvalues for data type of images*/
-
- if ( _mitkIpFuncExtT ( pic_1->type, pic_1->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* find out data type of new iamge */
-
- if ( keep == mitkIpFuncKeep )
- {
- pic_new = _mitkIpFuncMalloc ( pic_1, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
- }
- else if ( keep == mitkIpFuncNoKeep )
- {
- /* calculate max. and min. greyvalues of both images */
-
- if ( mitkIpFuncExtr ( pic_1, &min1, &max1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( mitkIpFuncExtr ( pic_2, &min2, &max2 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- smax = max1 / max2;
- smin = min1 / min2;
- min_max12 = min1 / max2;
- min_max21 = max1 / min2;
-
- /* change image type of images of type mitkIpPicInt */
-
- if ( pic_1->type == mitkIpPicInt )
- {
- if ( smax < max_gv && min_max12 < max_gv && min_max21 < max_gv &&
- smin > min_gv && min_max12 > min_gv && min_max21 > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_1->type == mitkIpPicUInt )
- {
- if ( smax < max_gv && min_max12 < max_gv && min_max21 < max_gv &&
- smin > min_gv && min_max12 > min_gv && min_max21 > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- pic_new->type = mitkIpPicInt;
- pic_new->bpe = 16;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- if ( smax > max_gv || min_max12 > max_gv || min_max21 > max_gv ||
- smin < min_gv || min_max12 < min_gv || min_max21 < min_gv )
- {
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
-
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_1->type == mitkIpPicFloat )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( keep == mitkIpFuncNoKeep )
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to invert the picture (for all data types) */
-
- if ( keep == mitkIpFuncNoKeep )
- {
- mitkIpPicFORALL_2 ( DIVI, pic_1, pic_2, pic_new )
- }
- else if ( keep == mitkIpFuncKeep )
- {
- mitkIpPicFORALL_2 ( DIVI3, pic_1, pic_2, pic_new )
- }
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_1);
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/DrawPoly.c b/Utilities/IpFunc/DrawPoly.c
deleted file mode 100644
index 0578829cec..0000000000
--- a/Utilities/IpFunc/DrawPoly.c
+++ /dev/null
@@ -1,388 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
-* this function draws the edge of an ROI in an image
-*/
-
-/** this function draws the edge of an ROI in an image
- * @param pic_old pointer to original image
- * @param pol_x vector with the x-coordinates of the points which
- * form the roi
- * @param pol_y vector with the y-coordinates of the points which
- * form the roi
- * @param no_pts number of points used to describe ROI
- *
- * @arg @c this function could just be used for 2D images
- *
- * @return image with roi
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncDrawPoly ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncDrawPoly\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of macros */
-
-#define MAX( x, y ) ( x > y ) ? x : y
-#define MIN( x, y ) ( x < y ) ? x : y
-
-#define DRAW( type, pic_help, a, b, pol_x, pol_y ) \
-{ \
- mitkIpUInt4_t beg; \
- mitkIpUInt4_t end; \
- mitkIpUInt4_t i, j; \
- mitkIpUInt4_t y; \
- type max; \
- \
- max = ( type ) max_gv; \
- /* draw polygon to pic_help */\
- \
- for ( i = 0; i < no_pts-1; i++ ) \
- { \
- if ( pol_x[i] == pol_x[i+1] ) \
- { \
- if ( pol_y[i] < pol_y[i+1] ) \
- { \
- beg = pol_y[i]; \
- end = pol_y[i+1]; \
- } \
- else \
- { \
- end = pol_y[i]; \
- beg = pol_y[i+1]; \
- } \
- for ( j = beg; j < end; j++ ) \
- (( type * )pic_help->data )[ j * pic_help->n[1] + pol_x[i]] = max;\
- } \
- else \
- { \
- if ( pol_x[i] < pol_x[i+1] ) \
- { \
- beg = pol_x[i]; \
- end = pol_x[i+1]; \
- } \
- else \
- { \
- end = pol_x[i]; \
- beg = pol_x[i+1]; \
- } \
- if ( pol_y[i] == pol_y[i+1] ) end = beg -1; \
- \
- for ( j = beg; j <= end; j++ ) \
- { \
- y = a[i] * j + b[i]; \
- (( type * )pic_help->data )[ y * pic_help->n[1] + j ] = max;\
- } \
- } \
- \
- if ( pol_y[i] == pol_y[i+1] ) \
- { \
- if ( pol_x[i] < pol_x[i+1] ) \
- { \
- beg = pol_x[i]; \
- end = pol_x[i+1]; \
- } \
- else \
- { \
- end = pol_x[i]; \
- beg = pol_x[i+1]; \
- } \
- \
- for ( j = beg; j < end; j++ ) \
- (( type * )pic_help->data )[ j + pic_help->n[1] * pol_y[i]] = max;\
- } \
- else \
- { \
- if ( pol_y[i] < pol_y[i+1] ) \
- { \
- beg = pol_y[i]; \
- end = pol_y[i+1]; \
- } \
- else \
- { \
- end = pol_y[i+1]; \
- beg = pol_y[i]; \
- } \
- if ( pol_x[i] == pol_x[i+1] ) end = beg - 1; \
- \
- for ( j = beg; j <= end; j++ ) \
- { \
- y = ( j - b[i] ) / a[i]; \
- (( type * )pic_help->data )[ j * pic_help->n[1] + y ] = max;\
- } \
- } \
- } \
- \
- if ( pol_x[no_pts-1] == pol_x[0] ) \
- { \
- if ( pol_y[no_pts-1] < pol_y[0] ) \
- { \
- beg = pol_y[no_pts-1]; \
- end = pol_y[0]; \
- } \
- else \
- { \
- end = pol_y[no_pts-1]; \
- beg = pol_y[0]; \
- } \
- \
- for ( j = beg; j < end; j++ ) \
- (( type * )pic_help->data )[ j * pic_help->n[1] + pol_x[no_pts-1]] = max;\
- } \
- else \
- { \
- if ( pol_x[no_pts-1] < pol_x[0] ) \
- { \
- beg = pol_x[no_pts-1]; \
- end = pol_x[0]; \
- } \
- else \
- { \
- end = pol_x[no_pts-1]; \
- beg = pol_x[0]; \
- } \
- if ( pol_y[no_pts-1] == pol_y[0] ) end = beg -1; \
- \
- for ( j = beg; j <= end; j++ ) \
- { \
- y = a[no_pts-1] * j + b[no_pts-1]; \
- (( type * )pic_help->data )[ y * pic_help->n[1] + j ] = max;\
- } \
- } \
- \
- if ( pol_y[no_pts-1] == pol_y[0] ) \
- { \
- if ( pol_x[no_pts-1] < pol_x[0] ) \
- { \
- beg = pol_x[no_pts-1]; \
- end = pol_x[0]; \
- } \
- else \
- { \
- end = pol_x[no_pts-1]; \
- beg = pol_x[0]; \
- } \
- \
- for ( j = beg; j < end; j++ ) \
- (( type * )pic_help->data )[ j + pic_help->n[1] * pol_y[no_pts-1]] = max;\
- } \
- else \
- { \
- if ( pol_y[no_pts-1] < pol_y[0] ) \
- { \
- beg = pol_y[no_pts-1]; \
- end = pol_y[0]; \
- } \
- else \
- { \
- end = pol_y[no_pts-1]; \
- beg = pol_y[0]; \
- } \
- if ( pol_x[no_pts-1] == pol_x[0] ) end = beg - 1; \
- \
- for ( j = beg; j <= end; j++ ) \
- { \
- y = ( j - b[no_pts-1] ) / a[no_pts-1]; \
- (( type * )pic_help->data )[ j * pic_help->n[1] + y ] = max;\
- } \
- } \
-}
-
-/* -------------------------------------------------------------------- */
-
-/*
-** mitkIpFuncDrawPoly
-*/
-
-mitkIpPicDescriptor *mitkIpFuncDrawPoly ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts )
-{
-
- mitkIpUInt4_t min_x, max_x; /* min, max x-coordinate of ROI */
- mitkIpUInt4_t min_y, max_y; /* min, max y-coordinate of ROI */
- mitkIpFloat8_t min_gv, max_gv;
- mitkIpFloat8_t *a, *b; /* Gerade y = ax+b */
- mitkIpFloat8_t diff; /* difference between two points */
- mitkIpPicDescriptor *pic_help;
- mitkIpUInt4_t i;
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( pic_old->dim > 2 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* calculate min. and max. coordiantes of ROI */
-
- min_x = pol_x[0];
- min_y = pol_y[0];
- max_x = pol_x[0];
- max_y = pol_y[0];
- for ( i = 1; i < no_pts; i++ )
- {
- min_x = MIN ( min_x, pol_x[i] );
- min_y = MIN ( min_y, pol_y[i] );
- max_x = MAX ( max_x, pol_x[i] );
- max_y = MAX ( max_y, pol_y[i] );
- }
-
- /* check whether ROI is in image */
-
- /* Expression is always false.
- if ( min_x < 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- */
-
- if ( max_x > pic_old->n[0] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* Expression is always false.
- if ( min_y < 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- */
-
- if ( max_y > pic_old->n[1] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate memory for a and b */
-
- a = ( mitkIpFloat8_t * ) malloc ( no_pts * sizeof ( mitkIpFloat8_t ) );
- if ( !a )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- b = ( mitkIpFloat8_t * ) malloc ( no_pts * sizeof ( mitkIpFloat8_t ) );
- if ( !b )
- {
- free ( a );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* Geraden zwischen zwei benachbarten Punkten berechnen */
-
- for ( i = 0; i < no_pts-1; i++ )
- {
- diff = ( mitkIpFloat8_t ) pol_x[i+1] - ( mitkIpFloat8_t ) pol_x[i];
- if ( diff )
- {
- a[i] = ( ( mitkIpFloat8_t ) pol_y[i+1] - ( mitkIpFloat8_t ) pol_y[i] ) / diff;
-
- b[i] = ( ( mitkIpFloat8_t ) pol_y[i] - a[i] * ( mitkIpFloat8_t )pol_x[i] );
- }
- else
- {
- b[i] = 0.;
- a[i] = 0.;
- }
- }
- diff = ( mitkIpFloat8_t ) pol_x[no_pts-1] - ( mitkIpFloat8_t ) pol_x[0];
- if ( diff )
- {
- a[no_pts-1] = ( ( mitkIpFloat8_t ) pol_y[no_pts-1] - ( mitkIpFloat8_t ) pol_y[0] ) / diff;
- b[no_pts-1] = ( pol_y[no_pts-1] - a[no_pts-1] * pol_x[no_pts-1] );
- }
- else
- {
- b[no_pts-1] = 0.;
- a[no_pts-1] = 0.;
- }
-
-
- /* allocate memory for pic help */
-
- pic_help = mitkIpPicClone ( pic_old );
- if ( pic_help == NULL )
- {
- free ( a );
- free ( b );
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- mitkIpPicFORALL_4 ( DRAW, pic_help, a, b, pol_x, pol_y );
-
- free ( a );
- free ( b );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_help, pic_old);
-
- return ( pic_help );
-}
-#endif
diff --git a/Utilities/IpFunc/Equal.c b/Utilities/IpFunc/Equal.c
deleted file mode 100644
index ab04954e33..0000000000
--- a/Utilities/IpFunc/Equal.c
+++ /dev/null
@@ -1,222 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
-* this function equalizes a greyvalue histogram
-*/
-
-
-/** this function equalizes a greyvalue histogram
- *
- * @param pic_old pointer to the image that should be equalized
- * @param kind intervall of transformation
- * @arg @c mitkIpFuncMinMax (extreme greyvalues)
- * @arg @c mitkIpFuncTotal (max. and min. possible
- * greyvalues)
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the egalized image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncEqual ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t kind,
- mitkIpPicDescriptor *pic_return ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncEqual\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-
-/* definition of EQUAL-macro */
-
-#define EQUAL( type, pic, pic_new, kind, factor, hist, help, size_hist ) \
-{ \
- type *hist_cp; \
- mitkIpUInt4_t i, no_elem; \
- mitkIpUInt4_t index; \
- mitkIpFloat8_t a, b; \
- mitkIpFloat8_t min, max; /* intervall for transformation */ \
- \
- /* allocate memory for the transformed histogram */ \
- \
- hist_cp = calloc( size_hist + 1, sizeof( type ) ); \
- if ( hist_cp == NULL ) \
- { \
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR ); \
- return ( NULL ); \
- } \
- \
- /* cumulative greylevel histogram */ \
- \
- for ( i = 1; i <= size_hist; i++ ) \
- { \
- hist[i] = hist[i] + hist[i-1]; \
- } \
- \
- /* check wether linerisation in [min_gv, max_gv] or in [min_max] */ \
- \
- if ( kind == mitkIpFuncMinMax ) \
- { \
- if ( mitkIpFuncExtr ( pic_old, &min, &max ) != mitkIpFuncOK ) \
- return ( mitkIpFuncERROR ); \
- } \
- else if ( kind == mitkIpFuncTotal ) \
- { \
- max = max_gv; \
- min = min_gv; \
- } \
- else \
- { \
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR ); \
- free ( hist_cp ); \
- free ( hist ); \
- return ( mitkIpFuncERROR ); \
- } \
- \
- /* transformation of histogram */ \
- \
- a = ( mitkIpFloat8_t ) _mitkIpPicElements ( pic ) / ( max - min ); \
- b = - a * min; \
- for ( i = 0; i <= size_hist; i++ ) \
- hist_cp[i] = ( type ) ( ( ( mitkIpFloat8_t )hist[i] - b ) / a ); \
- \
- /* transform greyvalues */ \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- index = ( mitkIpUInt4_t ) \
- ( factor * ((( type * ) pic->data )[i] + ( type )help ) );\
- ( ( type * ) pic_new->data )[i] = ( type ) hist_cp[index]; \
- } \
- free ( hist_cp ); \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncEqual ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t kind,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* inverted picture */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpUInt4_t *hist; /* greylevel histogram */
- mitkIpUInt4_t size_hist; /* no. of elements in histogram */
- mitkIpFloat4_t factor;
- mitkIpFloat8_t help;
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* create a new picture, copy the header, allocate memory */
-
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* calculate max. and min. possible greyvalues */
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- {
- mitkIpPicFree ( pic_new );
- return ( NULL );
- }
-
- /* calculate greylevel histogram */
-
- mitkIpFuncHist ( pic_old, min_gv, max_gv, &hist, &size_hist );
- if ( hist == 0 )
- {
- mitkIpPicFree ( pic_new );
- return ( NULL );
- }
-
- /* help variables to calculate histogram */
-
- help = fabs ( min_gv );
-
- if ( pic_old->type == mitkIpPicFloat )
- factor = 1000.;
- else if ( pic_old->type == mitkIpPicInt || pic_old->type == mitkIpPicUInt )
- factor = 1.;
- else
- {
- mitkIpPicFree ( pic_new );
- free ( hist );
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( NULL );
- }
-
- /* macro to change image (for all data types) */
-
- mitkIpPicFORALL_6 ( EQUAL, pic_old, pic_new, kind, factor, hist, help, size_hist );
-
- free ( hist );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
-
- return ( pic_new );
-}
-#endif
-
diff --git a/Utilities/IpFunc/Ero.c b/Utilities/IpFunc/Ero.c
deleted file mode 100644
index 1d7b96f0a4..0000000000
--- a/Utilities/IpFunc/Ero.c
+++ /dev/null
@@ -1,97 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs an erosion
- */
-
-/** @brief this function performs an erosion
- *
- * If the original image is a binary image each pixel is connected with
- * the surrounding
- * pixels which are non zero in the kernel by using logical operations
- * ( and for erosion, or for dilation ). Greylevel images are transformed
- * by taking the minimum (erosion) of the surrounding pixels or the
- * maximum (dilation).
- *
- * @param pic_old pointer to the original image
- * @param mask pointer to the kernel
- * @param border tells how the edge is transformed
- * @arg @c mitkIpFuncBorderOld : original greyvalues
- * @arg @c mitkIpFuncBorderZero : edge is set to zero
- *
- * @return pointer to the transformed image
- *
- * @par Uses
- * @arg _mitkIpFuncError() - check the image data
- * @arg _mitkIpFuncCompressM() - compress filtering mask
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncEro ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-#ifndef DOXYGEN_IGNORE
-
-mitkIpPicDescriptor *mitkIpFuncEro ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border )
-{
- mitkIpPicDescriptor *pic_new;
-
- pic_new = _mitkIpFuncMorph ( pic_old, pic_mask, mitkIpFuncEroF, border );
- if ( border == mitkIpFuncBorderZero )
- pic_new = mitkIpFuncBorder ( pic_new, pic_mask, pic_new );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-#endif
diff --git a/Utilities/IpFunc/Error.c b/Utilities/IpFunc/Error.c
deleted file mode 100644
index a45e0c80b1..0000000000
--- a/Utilities/IpFunc/Error.c
+++ /dev/null
@@ -1,134 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this functions checks, whether the information of the image header
- * are correct
- */
-
- /** @briefs checks, whether the information of the image header
- * are correct
- *
- * @param pic pointer to the image
- *
- * @return mitkIpFuncOK - if data are correct
- * @return mitkIpFuncERROR - if data aren't correct
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-# include "mitkIpFuncP.h"
-
-mitkIpUInt4_t _mitkIpFuncError ( mitkIpPicDescriptor *pic );
-
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-/*-------------------------------------------------------------------*/
-/*
-*/
-/*-------------------------------------------------------------------*/
-
-mitkIpUInt4_t _mitkIpFuncError ( mitkIpPicDescriptor *pic )
-{
- mitkIpUInt4_t i; /* loop index */
-
- /* is image existing ? */
-
- if ( !pic )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncNOPIC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* is dimension correct ? */
-
- if ( pic->dim < 1 || pic->dim > _mitkIpPicNDIM )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* is size correct ? */
-
- for ( i = 0; i < pic->dim; i++ )
- if ( pic->n[i] < 1 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncSIZE_ERROR );
- return ( mitkIpFuncERROR );
- }
- for ( i = pic->dim; i < _mitkIpPicNDIM; i++ )
- pic->n[i] = 0;
-
- /* is image data type correct ? */
-
- if ( pic->type == mitkIpPicInt || pic->type == mitkIpPicUInt )
- {
- if ( pic->bpe != 8 && pic->bpe != 16 && pic->bpe != 32 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
- else if ( pic->type == mitkIpPicFloat )
- {
- if ( pic->bpe != 32 && pic->bpe != 64 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- return ( mitkIpFuncOK );
-}
-#endif
-
diff --git a/Utilities/IpFunc/Exp.c b/Utilities/IpFunc/Exp.c
deleted file mode 100644
index beff407d92..0000000000
--- a/Utilities/IpFunc/Exp.c
+++ /dev/null
@@ -1,154 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * transforms the greyvalues by an exponential function (y = exp (ax) + b)
-*/
-
-/** transforms the greyvalues by an exponential function (y = exp (ax) + b)
- *
- * @param pic_old pointer to the image that should be inverted
- * @param kind determines
- * mitkIpFuncTotal => transformation of all greyvalues
- * mitkIpFuncMinMax=> transformation of greyvalues between min and max
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the image after exponential transformation
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncExp ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t kind,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncExp\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-
-/* definition of macro for normalisation */
-
-#define EXP( type, pic, min_gv, max_gv ) \
-{ \
- mitkIpUInt4_t no_elem; \
- mitkIpFloat8_t a; \
- \
- a = log ( max_gv - min_gv + 1 ) / ( max_gv - min_gv ); \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type * ) pic_new->data ) [i] = \
- ( type ) ( exp ( a * ((( type * ) pic->data ) [i] - min_gv)) \
- -1 + min_gv ); \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-** function mitkIpFuncExp:
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncExp ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t kind,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* inverted picture */
- mitkIpUInt4_t i; /* loopindex */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
-
-
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max. or min possible greyvalue for datatype */
-
- if ( kind == mitkIpFuncTotal )
- {
- if ( _mitkIpFuncExtT( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
- }
- else if ( kind == mitkIpFuncMinMax )
- {
- if ( mitkIpFuncExtr ( pic_old, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* create a new picture, copy the header, allocate memory */
-
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* macro to invert the picture (for all data types) */
-
- mitkIpPicFORALL_2( EXP, pic_old, min_gv, max_gv );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/ExtT.c b/Utilities/IpFunc/ExtT.c
deleted file mode 100644
index 134a6304f8..0000000000
--- a/Utilities/IpFunc/ExtT.c
+++ /dev/null
@@ -1,140 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function returns the allowed greyvalue range for a specific data-type
- */
-
-/** @brief this function returns the allowed greyvalue range for a
- * specific data-type
- *
- * @param type data-type of image data
- * @param bpe number of bits per element
- * @param max_gv max. possible greyvalue
- * @param min_gv min. possible greyvalue
- *
- * @return mitkIpFuncERROR if an error occured
- * @return mitkIpFuncOK when no error occured
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpInt4_t _mitkIpFuncExtT ( mitkIpPicType_t type,
- mitkIpUInt4_t bpe,
- mitkIpFloat8_t *min_gv,
- mitkIpFloat8_t *max_gv );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)_mitkIpFuncExtT\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-
-#ifdef _WIN32
-#include <float.h>
-#endif
-
-/* definition of EXP-macro */
-
-#define EXP( max_gv, bpe ) \
-{ \
- mitkIpUInt4_t i; \
- \
- *max_gv = 1; \
- for ( i = 1; i <= bpe; i++ ) \
- *max_gv = *max_gv * 2; \
-}
-
-/* ------------------------------------------------------------------- */
-/*
-** function _picExtT: calculates the max. and min. possible greyvalues for
-** a certain datatype
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpInt4_t _mitkIpFuncExtT ( mitkIpPicType_t type,
- mitkIpUInt4_t bpe,
- mitkIpFloat8_t *min_gv,
- mitkIpFloat8_t *max_gv )
-{
-
- /* calculate max. or min possible greyvalue for datatype */
-
- if ( type == mitkIpPicInt )
- {
- EXP( max_gv, bpe - 1 )
- *max_gv = *max_gv - 1;
- *min_gv = - *max_gv;
- }
- else if ( type == mitkIpPicUInt )
- {
- EXP (max_gv, bpe )
- *max_gv = *max_gv - 1;
- *min_gv = 0;
- }
- else if ( type == mitkIpPicFloat )
- {
- if ( bpe = 32 )
- {
- *max_gv = FLT_MAX;
- *min_gv = - FLT_MAX;
- }
- else if ( bpe = 64 )
- {
- *max_gv = DBL_MAX;
- *min_gv = - DBL_MAX;
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- return ( mitkIpFuncOK );
-}
-#endif
diff --git a/Utilities/IpFunc/ExtrC.c b/Utilities/IpFunc/ExtrC.c
deleted file mode 100644
index a92fbe9518..0000000000
--- a/Utilities/IpFunc/ExtrC.c
+++ /dev/null
@@ -1,220 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * this function calculates the extreme greyvalues of all greyvalues which are
- * included by a circle.
- */
-
-/** @brief calculates the extreme greyvalues of all greyvalues which are
- * included by a circle.
- *
- * The circle is described by its center and radius.
- *
- * @param pic_old pointer to the original image
- * @param min` pointer to minimal greyvalue in circle ( return value )
- * @param max pointer to maximal greyvalue in circle ( return value )
- * @param center pointer to an array that contains the coordinates
- * of the center
- * of the circle
- * @param radius radius of the circle
- *
- * @return mitkIpFuncOK - if no error occured
- * @return mitkIpFuncERROR - if an error occured
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpUInt4_t mitkIpFuncExtrC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max,
- mitkIpUInt4_t *center,
- mitkIpUInt4_t radius );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncExtrC\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of macros */
-
-
-#define EXTR( type, pic, beg, end, size, center, radius ) \
-{ \
- mitkIpUInt4_t i; /* loop index */ \
- mitkIpUInt4_t offset; /* offset of pixels in pic_new */ \
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* used to calculate offset of image pixels */ \
- mitkIpUInt4_t dist[_mitkIpPicNDIM]; /* used to calculate offset of image pixels */ \
- mitkIpFloat8_t help; \
- \
- offset = 0; \
- for ( i = 0; i < pic->dim; i++ ) \
- offset = offset + center[i] * size[i]; \
- *max = ( mitkIpFloat8_t )( ( type * ) pic->data ) [offset]; \
- *min = ( mitkIpFloat8_t )( ( type * ) pic->data ) [offset]; \
- \
- for ( ind[7] = beg[7] ; ind[7] < end[7]; ind[7]++ ) \
- { \
- dist[7] = ( ind[7] - center[7] ) * ( ind[7] - center[7] ); \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = beg[6] ; ind[6] < end[6]; ind[6]++ ) \
- { \
- dist[6] = ( ind[6] - center[6] ) * ( ind[6] - center[6] ) + dist[7]; \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = beg[5] ; ind[5] < end[5]; ind[5]++ ) \
- { \
- dist[5] = ( ind[5] - center[5] ) * ( ind[5] - center[5] ) + dist[6]; \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = beg[4] ; ind[4] < end[4]; ind[4]++ ) \
- { \
- dist[4] = ( ind[4] - center[4] ) * ( ind[4] - center[4] ) + dist[5]; \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = beg[3] ; ind[3] < end[3]; ind[3]++ ) \
- { \
- dist[3] = ( ind[3] - center[3] ) * ( ind[3] - center[3] ) + dist[4]; \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = beg[2] ; ind[2] < end[2]; ind[2]++ ) \
- { \
- dist[2] = ( ind[2] - center[2] ) * ( ind[2] - center[2] ) + dist[3]; \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = beg[1] ; ind[1] < end[1]; ind[1]++ ) \
- { \
- dist[1] = ( ind[1] - center[1] ) * ( ind[1] - center[1] ) +dist[2];\
- off[1] = size[1] * ind[1] + off[2]; \
- off[0] = off[1]+beg[0]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- dist[0] = ( ind[0] - center[0] ) * ( ind[0] - center[0] )+dist[1];\
- if ( sqrt ( ( mitkIpFloat8_t ) dist[0] ) <= radius ) \
- { \
- help = ( mitkIpFloat8_t )( ( type * ) pic->data ) [off[0]]; \
- *max = ( help > *max ) ? help : *max; \
- *min = ( help < *min ) ? help : *min; \
- } \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-
-
-/* ------------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------------ */
-
-mitkIpUInt4_t mitkIpFuncExtrC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max,
- mitkIpUInt4_t *center,
- mitkIpUInt4_t radius )
-{
- mitkIpInt4_t help;
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t end[_mitkIpPicNDIM]; /* end of window */
- mitkIpUInt4_t begin[_mitkIpPicNDIM]; /* beginning of window */
- mitkIpUInt4_t centr[_mitkIpPicNDIM]; /* beginning of window */
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( radius <= 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- for ( i = 0; i < pic_old->dim; i++ )
- {
- help = center[i] - radius;
- if ( help < 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- else begin[i] = ( mitkIpUInt4_t )help;
-
- help = center[i] + radius;
- if ( (mitkIpUInt4_t) help > pic_old->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- else end[i] = ( mitkIpUInt4_t )help + 1;
- centr[i] = center[i];
- }
-
- /* initialize vectors and variables */
-
- size[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
- size[pic_old->dim] = 0;
-
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- {
- centr[i] = 0;
- begin[i] = 0;
- end[i] = 1;
- }
-
- /* allocate image structure */
-
- mitkIpPicFORALL_5 ( EXTR, pic_old, begin, end, size, centr, radius );
-
- return ( mitkIpFuncOK );
-}
-
-#endif
-
diff --git a/Utilities/IpFunc/ExtrR.c b/Utilities/IpFunc/ExtrR.c
deleted file mode 100644
index 9e01811b66..0000000000
--- a/Utilities/IpFunc/ExtrR.c
+++ /dev/null
@@ -1,98 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the extreme values of all greyvalues included by a rectangle
- */
-
-
-/** @brief calculates the extreme values of all greyvalues included by a rectangle
- *
- * The rectangle is described by a vector with the coordinates of the
- * upper left corner and a vector of its length in each direction
- *
- * @param pic_old pointer to original image
- * @param min pointer to minimal greyvalue ( return value )
- * @param max pointer to maximal greyvalue ( return value )
- * @param begin vector with the beginning coordinates of the window
- * @param length vector with the length of the window in each direction
- *
- * @return mitkIpFuncOK if no error occured
- * @return mitkIpFuncERROR if an error occured
- *
- * AUTHOR & DATE
- */
-#include "mitkIpFuncP.h"
-
-mitkIpUInt4_t mitkIpFuncExtrR ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncExtrR\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-mitkIpUInt4_t mitkIpFuncExtrR ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length )
-{
-
- mitkIpPicDescriptor *pic_help;
- mitkIpInt4_t error;
-
- pic_help = mitkIpFuncWindow ( pic_old, begin, length );
-
- if ( pic_help )
- error = mitkIpFuncExtr ( pic_help, min, max );
- else
- return ( mitkIpFuncERROR );
-
- mitkIpPicFree ( pic_help );
-
- return ( error );
-}
-#endif
diff --git a/Utilities/IpFunc/ExtrROI.c b/Utilities/IpFunc/ExtrROI.c
deleted file mode 100644
index 9fcabb8c34..0000000000
--- a/Utilities/IpFunc/ExtrROI.c
+++ /dev/null
@@ -1,251 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the extreme greyvalues
- * of all pixels which are included by a polygon which
- * is described by a sequence of points
- */
-
-/** @brief calculates the extreme greyvalues
- * of all pixels which are included by a polygon which
- * is described by a sequence of points
- *
- * @param pic_old pointer to original image
- * @param min minimal greyvalue in ROI ( return value )
- * @param max maximal greyvalue in ROI ( return value )
- * @param pol_x vector with the x-coordinates of the points which form
- * form the roi
- * @param pol_y vector with the y-coordinates of the points which form
- * form the roi
- * @param no_pts number of points used to describe ROI
- *
- * REMARKS
- * this function could just be used for 2D images
- *
- * @return mitkIpFuncOK when no error occured
- * @return mitkIpFuncERROR when an error occured
- *
- * AUTHOR & DATE
- */
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpUInt4_t mitkIpFuncExtrROI ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncExtrROI\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/*definition of macros */
-
-#define MAX( x, y ) ( x > y ) ? x : y
-#define MIN( x, y ) ( x < y ) ? x : y
-#define ROI( type, pic, pic_help ) \
-{ \
- mitkIpBool_t in; \
- mitkIpUInt4_t i, j; \
- mitkIpUInt4_t offset; \
- mitkIpFloat8_t help; \
- \
- *max = (( type * )pic->data )[pol_x[0] + pol_y[0] * pic->n[0]]; \
- *min = (( type * )pic->data )[pol_x[0] + pol_y[0] * pic->n[0]]; \
- for ( i = min_y; i <= max_y; i++ ) \
- { \
- in = mitkIpFalse; \
- offset = i * pic->n[0] + min_x; \
- for ( j = min_x; j <= max_x; j++ ) \
- { \
- if ( (( mitkIpUInt1_t * )pic_help->data )[offset] && ( !in ) ) \
- in = mitkIpTrue; \
- else if ( (( mitkIpUInt1_t * )pic_help->data )[offset] && ( in ) ) \
- { \
- in = mitkIpFalse; \
- help = ( mitkIpFloat8_t ) (( type * )pic->data )[offset]; \
- *max = MAX ( help, *max ); \
- *min = MIN ( help, *min ); \
- } \
- \
- if ( in ) \
- { \
- help = ( mitkIpFloat8_t ) (( type * )pic->data )[offset]; \
- *max = MAX ( help, *max ); \
- *min = MIN ( help, *min ); \
- } \
- offset++; \
- } \
- } \
-}
-
-/*
-** mitkIpFuncMeanROI
-*/
-
-mitkIpUInt4_t mitkIpFuncExtrROI ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts )
-{
- mitkIpFloat8_t *a, *b; /* Gerade y = ax+b */
- mitkIpPicDescriptor *pic_help; /* contains edge of ROI */
- mitkIpUInt4_t min_x, max_x; /* min, max x-coordinate of ROI */
- mitkIpUInt4_t min_y, max_y; /* min, max y-coordinate of ROI */
- mitkIpUInt4_t i; /* loop variable */
- mitkIpFloat8_t diff; /* difference between two points */
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( pic_old->dim > 2 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* calculate min. and max. coordiantes of ROI */
-
- min_x = pol_x[0];
- min_y = pol_y[0];
- max_x = pol_x[0];
- max_y = pol_y[0];
- for ( i = 1; i < no_pts; i++ )
- {
- min_x = MIN ( min_x, pol_x[i] );
- min_y = MIN ( min_y, pol_y[i] );
- max_x = MAX ( max_x, pol_x[i] );
- max_y = MAX ( max_y, pol_y[i] );
- }
-
- /* check whether ROI is in image */
-
- /* Expression is always false!
- if ( min_x < 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- */
- if ( max_x > pic_old->n[0] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- /* Expression is always false!
- if ( min_y < 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- */
- if ( max_y > pic_old->n[1] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate memory for a and b */
-
- a = ( mitkIpFloat8_t * ) malloc ( no_pts * sizeof ( mitkIpFloat8_t ) );
- b = ( mitkIpFloat8_t * ) malloc ( no_pts * sizeof ( mitkIpFloat8_t ) );
-
- /* Geraden zwischen zwei benachbarten Punkten berechnen */
-
- for ( i = 0; i < no_pts-1; i++ )
- {
- diff = ( mitkIpFloat8_t ) pol_x[i+1] - ( mitkIpFloat8_t ) pol_x[i];
- if ( diff )
- {
- a[i] = ( ( mitkIpFloat8_t ) pol_y[i+1] - ( mitkIpFloat8_t ) pol_y[i] ) / diff;
- b[i] = ( ( mitkIpFloat8_t ) pol_y[i] - a[i] * ( mitkIpFloat8_t )pol_x[i] );
- }
- else
- {
- b[i] = 0.;
- a[i] = 0.;
- }
- }
- diff = ( mitkIpFloat8_t ) pol_x[no_pts-1] - ( mitkIpFloat8_t ) pol_x[0];
- if ( diff )
- {
- a[no_pts-1] = ( ( mitkIpFloat8_t ) pol_y[no_pts-1] - ( mitkIpFloat8_t ) pol_y[0] ) / diff;
- b[no_pts-1] = ( pol_y[no_pts-1] - a[no_pts-1] * pol_x[no_pts-1] );
- }
- else
- {
- b[no_pts-1] = 0.;
- a[no_pts-1] = 0.;
- }
-
- /* draw polygon to image */
-
- pic_help = _mitkIpFuncDrawPoly ( pic_old, pol_x, pol_y, no_pts, a, b );
- if ( ! pic_help )
- {
- free ( a );
- free ( b );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to calculate mean */
-
- mitkIpPicFORALL_1 ( ROI, pic_old, pic_help );
-
-
- free ( a );
- free ( b );
- mitkIpPicFree ( pic_help );
-
- return ( mitkIpFuncOK );
-
-}
-
-#endif
diff --git a/Utilities/IpFunc/Extrema.c b/Utilities/IpFunc/Extrema.c
deleted file mode 100644
index eb80a033bc..0000000000
--- a/Utilities/IpFunc/Extrema.c
+++ /dev/null
@@ -1,123 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the extreme greyvalues of an image
- */
-
-
-/** this function calculates the extreme greyvalues of an image
- * @param pic pointer to the image
- * @param &min result variable: minimum
- * @param &max result variable: maximum
- *
- * @return mitkIpFuncOK no error occured
- * @return mitkIpFuncERROR an error occured
- *
- * AUTHOR
- */
-
-/* include-files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpInt4_t mitkIpFuncExtr ( mitkIpPicDescriptor *pic,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max );
-
-#ifndef DOXYGEN_IGNORE
-
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncExtr\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-
-/* definition of extreme value macro */
-
-#define EXTR( type, pic, min_c, max_c ) \
- { \
- mitkIpUInt4_t i; \
- mitkIpUInt4_t no_elem; \
- mitkIpFloat8_t help; \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- max_c = ( mitkIpFloat8_t )( ( type * ) pic->data ) [0]; \
- min_c = ( mitkIpFloat8_t )( ( type * ) pic->data ) [0]; \
- \
- for ( i = 1; i < no_elem; i++ ) \
- { \
- help = ( mitkIpFloat8_t )( ( type * ) pic->data ) [i]; \
- max_c = ( help > max_c ) ? help : max_c; \
- min_c = ( help < min_c ) ? help : min_c; \
- \
- } \
- }
-
-/* ========================================================== */
-/*
-*/
-/* ========================================================== */
-
-mitkIpInt4_t mitkIpFuncExtr ( mitkIpPicDescriptor *pic,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max )
-{
-
- mitkIpFloat8_t min_c = 0.0;
- mitkIpFloat8_t max_c = 0.0;
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* macro to calculate extreme values ( for all data types */
-
- mitkIpPicFORALL_2( EXTR, pic, min_c, max_c)
-
- *min = min_c;
- *max = max_c;
-
- return( mitkIpFuncOK );
-}
-#endif
-
diff --git a/Utilities/IpFunc/FillArea.c b/Utilities/IpFunc/FillArea.c
deleted file mode 100644
index c2efe084e3..0000000000
--- a/Utilities/IpFunc/FillArea.c
+++ /dev/null
@@ -1,201 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/**@file
- * this function fills an area
- */
-
-/** @brief fills an area
- *
- * @warning not tested
- *
- * AUTHOR & DATE
- */
-
-#ifndef lint
- static char *what = { "@(#)\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-/* definition of macros and constants */
-
-#define KL <
-#define GR >
-
-#define MAX( x, y ) ( x > y ) ? x : y
-#define MIN( x, y ) ( x < y ) ? x : y
-
-#define RECT( type, pic, beg, end, value ) \
-{ \
- mitkIpUInt4_t i, j, n; \
- mitkIpUInt4_t offset; \
- \
- n = pic->n[0]; \
- for ( j = beg[1]; j < end[1]; j++ ) \
- { \
- offset = j * n; \
- for ( i = beg[0]; i < end[0]; i++ ) \
- (( type * )pic->data )[i + offset] = ( type ) value; \
- } \
-}
-#define TRI( type, pic, beg, end, value, a, b, OP ) \
-{ \
- mitkIpUInt4_t i, j, n; \
- mitkIpUInt4_t offset; \
- mitkIpFloat8_t help; \
- \
- n = pic->n[0]; \
- for ( j = beg[1]; j < end[1]; j++ ) \
- { \
- offset = j * n; \
- for ( i = beg[0]; i < end[0]; i++ ) \
- { \
- help = a * i + b; \
- if ( j OP help ) \
- { \
- (( type * )pic->data )[i + offset] = ( type ) value; \
- } \
- } \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncFillArea ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncBox_t box,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t over,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* inverted picture */
- mitkIpFloat8_t a, b; /* parameter der Gerade y = ax + b */
- mitkIpUInt4_t beg[2]; /* Anfangswerte */
- mitkIpUInt4_t end[2]; /* Endwerte */
-
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* create a new picture, copy the header, allocate memory */
-
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
- if ( pic_new != pic_old )
- {
- memmove ( pic_new->data, pic_old->data, _mitkIpPicElements ( pic_old ) * pic_old->bpe /8 );
- }
-
- /* Gerade durch die beiden Punkte */
-
- a = ( ( mitkIpFloat8_t ) box.y1 - ( mitkIpFloat8_t ) box.y0 ) /
- ( ( mitkIpFloat8_t ) box.x1 - ( mitkIpFloat8_t ) box.x0 );
-
- b = ( mitkIpFloat8_t ) box.y0 - a * box.x0;
-
- /* check which region (above/beneath) has to be changed */
-
- if ( over == mitkIpFuncAbove )
- {
- beg[0] = 0; end[0] = pic_old->n[0];
- beg[1] = 0; end[1] = MIN ( box.y0, box.y1 );
- /* printf ( "1.Rechteck: beg %d %d end: %d %d \n", beg[0], beg[1], end[0], end[1] ); */
- mitkIpPicFORALL_3 ( RECT, pic_new, beg, end, value );
-
- beg[0] = ( box.y0 < box.y1 ) ? box.x1 : 0;
- end[0] = ( box.y0 < box.y1 ) ? pic_old->n[0] : box.x0;
- beg[1] = MIN ( box.y0, box.y1 );
- end[1] = MAX ( box.y0, box.y1 );
-/* printf ( "2.Rechteck: beg %d %d end: %d %d \n", beg[0], beg[1], end[0], end[1] ); */
- mitkIpPicFORALL_3 ( RECT, pic_new, beg, end, value );
-
- beg[0] = box.x0; end[0] = box.x1;
- beg[1] = MIN ( box.y0, box.y1 );
- end[1] = MAX ( box.y0, box.y1 );
-/* printf ( "1.Dreieck: beg %d %d end: %d %d \n", beg[0], beg[1], end[0], end[1] ); */
- mitkIpPicFORALL_6 ( TRI, pic_new, beg, end, value, a, b, KL );
- }
- else if ( over == mitkIpFuncBeneath )
- {
- beg[0] = 0; end[0] = pic_old->n[0];
- beg[1] = MAX ( box.y0, box.y1 ); end[1] = pic_old->n[1];
-/* printf ( "1.Rechteck: beg %d %d end: %d %d \n", beg[0], beg[1], end[0], end[1] ); */
- mitkIpPicFORALL_3 ( RECT, pic_new, beg, end, value );
-
- beg[0] = ( box.y0 < box.y1 ) ? 0 : box.x1;
- end[0] = ( box.y0 < box.y1 ) ? box.x0 : pic_old->n[0];
- beg[1] = MIN ( box.y0, box.y1 );
- end[1] = MAX ( box.y0, box.y1 );
-/* printf ( "2.Rechteck: beg %d %d end: %d %d \n", beg[0], beg[1], end[0], end[1] ); */
- mitkIpPicFORALL_3 ( RECT, pic_new, beg, end, value );
-
- beg[0] = box.x0; end[0] = box.x1;
- beg[1] = MIN ( box.y0, box.y1 );
- end[1] = MAX ( box.y0, box.y1 );
-/* printf ( "1.Dreieck: beg %d %d end: %d %d \n", beg[0], beg[1], end[0], end[1] ); */
- mitkIpPicFORALL_6 ( TRI, pic_new, beg, end, value, a, b, GR );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
-
-
- return pic_new;
-}
-
diff --git a/Utilities/IpFunc/Frame.c b/Utilities/IpFunc/Frame.c
deleted file mode 100644
index 5d1393039b..0000000000
--- a/Utilities/IpFunc/Frame.c
+++ /dev/null
@@ -1,119 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * this function adds a frame around an image
- */
-
-/** @brief adds a frame around an image
- *
- * The thickness of the frame can be chosen separately for each dimension
- * (parameter edge). The original image will not be changed, instead a
- * new one will be returned.
- *
- * @param pic_old image to which the frame will be added
- * @param edge vector with the thichness' of the frame in each direction
- * @param value this greyvalue is used for the frame
- *
- * $Log$
- * Revision 1.3 2005/10/05 16:31:55 nolden
- * FIX: added newline to avoid warning
- *
- * Revision 1.2 2000/05/24 15:29:42 tobiask
- * Changed the installation paths of the package.
- *
- * Revision 1.4 2000/05/04 12:52:10 ivo
- * inserted BSD style license
- *
- * Revision 1.3 2000/03/06 17:02:39 ivo
- * ipFunc now with doxygen documentation.
- *
- * Revision 1.2 2000/02/18 14:58:02 ivo
- * Tags are now copied into newly allocated images.
- * Bugs fixed in mitkIpFuncFrame, mitkIpFuncRegGrow, _mitkIpFuncBorderX and mitkIpFuncHitMiss.
- *
- * Revision 1.1.1.1 2000/02/18 15:30:50 ivo
- * memory leak removed: mitkIpFuncKeep in call of mitkIpFuncWindowR substituted
- * by mitkIpFuncKeep (pic_new is already a new image!).
- *
- *
- * AUTHOR & DATE
- */
-
-#include "mitkIpFuncP.h"
-mitkIpPicDescriptor *mitkIpFuncFrame ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *edge,
- mitkIpFloat8_t value );
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-/* include files */
-
-
-
-/* ------------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *mitkIpFuncFrame ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *edge,
- mitkIpFloat8_t value )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
-
- pic_new = _mitkIpFuncBorderX ( pic_old, edge, value );
- if ( mitkIpFuncErrno > mitkIpFuncOK )
- return ( mitkIpFuncERROR );
- else
- pic_new = mitkIpFuncWindowR ( pic_new, pic_old, edge, mitkIpFuncNoKeep );
-
- /* Copy Tags */
-
- strncpy( pic_new->info->version, pic_old->info->version, _mitkIpPicTAGLEN );
- pic_new->info->tags_head = _mitkIpPicCloneTags( pic_old->info->tags_head );
- pic_new->info->write_protect = pic_old->info->write_protect;
-
- return ( pic_new );
-}
-#endif
diff --git a/Utilities/IpFunc/GaussF.c b/Utilities/IpFunc/GaussF.c
deleted file mode 100644
index d45dbbef11..0000000000
--- a/Utilities/IpFunc/GaussF.c
+++ /dev/null
@@ -1,213 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function smoothes an image using a filtering mask which consists
- * of elements calculated from a Gausian distribution
- */
-
-/** this function smoothes an image using a filtering mask which consists
- * of elements calculated from a Gausian distribution
- *
- * @param pic_old pointer to original image
- * @param len_mask number of mask elements for each dimension
- * @param dim_mask dimension of mask
- * @param border handling of the edge
- * @arg @c mitkIpFuncBorderZero : set edge pixels to zero
- * @arg @c mitkIpFuncBorderOld : keep greyvalues of original image
- *
- * @return pointer to smoothed image
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-mitkIpPicDescriptor *mitkIpFuncGausF ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t len_mask,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncGaussF\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* --------------------------------------------------------------------- */
-/*
-** function mitkIpFuncGausF
-*/
-/* --------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncGausF ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t len_mask,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to new image structure */
- mitkIpPicDescriptor *pic_mask; /* pointer to mask */
- mitkIpUInt4_t n[_mitkIpPicNDIM]; /* size of each dimension */
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */
- mitkIpUInt4_t i, k; /* loop index */
- mitkIpUInt4_t no_elem; /* number of mask elements */
- mitkIpUInt4_t offset; /* offset of pixels */
- mitkIpUInt4_t element; /* used to calculate mask elements */
- mitkIpUInt4_t sum; /* sum of all mask elements */
- mitkIpUInt4_t nn, nfac, kfac; /* used to calculate bin. coeff */
- mitkIpUInt4_t *bin; /* binomial coeffizients */
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( pic_old->dim < dim_mask || dim_mask < 1 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( len_mask % 2 != 1 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* calculate binomial coefficient */
-
- bin = malloc ( len_mask * sizeof ( mitkIpUInt4_t ) );
- if ( bin == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- nn = len_mask;
- bin[0] = 1;
- bin[nn-1] = 1;
- nfac = 1;
- kfac = 1;
-
- for ( k = 1; k < nn-1; k++ )
- {
- kfac = k * kfac;
- nfac = nfac * ( nn - k );
- bin[k] = nfac / kfac;
- }
-
- /* initialize mask */
-
- pic_mask = mitkIpPicNew();
-
- if ( pic_mask == NULL )
- {
- free ( bin );
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- pic_mask->type = mitkIpPicFloat;
- pic_mask->bpe = 64;
- pic_mask->dim = dim_mask;
-
- for ( i = 0; i < dim_mask; i++ ) pic_mask->n[i] = len_mask;
-
- pic_mask->data = malloc ( _mitkIpPicSize ( pic_mask ) );
-
- if ( pic_mask->data == NULL )
- {
- free ( bin );
- mitkIpPicFree ( pic_mask );
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialize vectors */
-
- for ( i = 0; i < pic_mask->dim; i++ )
- n[i] = len_mask;
- for ( i = pic_mask->dim; i < _mitkIpPicNDIM; i++ )
- n[i] = 1;
-
- /* calculate mask */
-
- offset = 0;
- sum = 0;
- for ( ind[7] = 0; ind[7] < n[7]; ind[7]++ )
- for ( ind[6] = 0; ind[6] < n[6]; ind[6]++ )
- for ( ind[5] = 0; ind[5] < n[5]; ind[5]++ )
- for ( ind[4] = 0; ind[4] < n[4]; ind[4]++ )
- for ( ind[3] = 0; ind[3] < n[3]; ind[3]++ )
- for ( ind[2] = 0; ind[2] < n[2]; ind[2]++ )
- for ( ind[1] = 0; ind[1] < n[1]; ind[1]++ )
- for ( ind[0] = 0; ind[0] < n[0]; ind[0]++ )
- {
- element = 1;
- for ( i = 0; i < pic_mask->dim; i++ )
- element = element * bin[ind[i]];
-
- (( mitkIpFloat8_t * )pic_mask->data)[offset] =
- ( mitkIpFloat8_t ) element;
- sum = sum + element;
- offset++;
- }
-
- no_elem = _mitkIpPicElements ( pic_mask );
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpFloat8_t * ) pic_mask->data ) [i] =
- (( mitkIpFloat8_t * ) pic_mask->data ) [i] / ( mitkIpFloat8_t ) sum;
-
- /* convolve image with Gausian mask */
-
- pic_new = mitkIpFuncConv ( pic_old, pic_mask, border );
-
- mitkIpPicFree ( pic_mask );
- free ( bin );
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-
-#endif
-
diff --git a/Utilities/IpFunc/Grad.c b/Utilities/IpFunc/Grad.c
deleted file mode 100644
index 29881ff2f7..0000000000
--- a/Utilities/IpFunc/Grad.c
+++ /dev/null
@@ -1,358 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs an absolute gradient to extract
- * edges of an image
- */
-
-/** @brief performs an absolute gradient to extract
- * edges of an image
- *
- * @param pic_old pointer to original image
- * @param dim_mask dimension of mask
- * @param border tells how the edge is transformed
- * mitkIpFuncBorderOld: original greyvalues
- * mitkIpFuncBorderZero: edge is set to minimal greyvalue
- *
- * @return pointer to transformed iamge
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncGrad ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border ) ;
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncGrad\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-/* definition of macros */
-
-#define GRAD( type, pic, pic_new, pic_mask, m, beg, end, dim_mask ) \
-{ \
- mitkIpUInt4_t i, j; /* loop index */ \
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */ \
- mitkIpInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* offset vector */ \
- mitkIpUInt4_t begin[_mitkIpPicNDIM]; \
- mitkIpFloat8_t help, help2; \
- \
- /* initialisation of vectors */ \
- \
- size [0] = 1; \
- for ( i = 1; i < pic->dim; i++ ) \
- size[i] = size[i-1] * pic_old->n[i-1]; \
- for ( i = pic->dim; i < _mitkIpPicNDIM; i++ ) \
- size[i] = 0; \
- \
- begin[0] = 0; \
- for ( i = 1; i <= dim_mask; i++ ) \
- begin[i] = begin[i-1] + m->length / dim_mask; \
- \
- /* transformation of image */ \
- \
- for ( ind[7] = beg[7]; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = ind[7] * size[7]; \
- for ( ind[6] = beg[6]; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = ind[6] * size[6] + off[7]; \
- for ( ind[5] = beg[5]; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = ind[5] * size[5] + off[6]; \
- for ( ind[4] = beg[4]; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = ind[4] * size[4] + off[5]; \
- for ( ind[3] = beg[3]; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = ind[3] * size[3] + off[4]; \
- for ( ind[2] = beg[2]; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = ind[2] * size[2] + off[3]; \
- for ( ind[1] = beg[1]; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = ind[1] * size[1] + off[2]; \
- off[0] = beg[0] + off[1]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- help2 = 0; \
- for ( j = 0; j < dim_mask; j++ ) \
- { \
- help = 0; \
- for ( i = begin[j]; i < begin[j+1]; i++ ) \
- { \
- help = help + m->mask_vekt[i] / sum * ( mitkIpFloat8_t )\
- (( type * )pic->data )[off[0]+m->off_vekt[i]];\
- } \
- help2 = help2 + help * help; \
- } \
- (( type * )pic_new->data)[off[0]] = \
- ( type ) sqrt ( help2 / dim_mask ) / 2.; \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-
-/* ----------------------------------------------------------------- */
-/*
-** mitkIpFuncGrad
-*/
-/* ----------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncGrad ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border )
-{
- #include "gradient.h"
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpPicDescriptor *pic_mask; /* sobel mask */
- mitkIpUInt4_t pos; /* position in m->off_vekt */
- mitkIpUInt4_t i, j; /* loopindex */
- mitkIpUInt4_t off_mask; /* loopindex */
- mitkIpFuncMasc_t *m; /* compressed mask */
- mitkIpInt4_t offset;
- mitkIpInt4_t beg[_mitkIpPicNDIM];
- mitkIpInt4_t end[_mitkIpPicNDIM];
- mitkIpInt4_t ind[_mitkIpPicNDIM];
- mitkIpUInt4_t size[_mitkIpPicNDIM];
- mitkIpInt4_t n[_mitkIpPicNDIM];
- mitkIpFloat8_t sum;
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( ( dim_mask > 4 ) || ( dim_mask < 1 ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( pic_old->dim < dim_mask )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* create a new picture, copy the header, allocate memory */
-
- if ( border == mitkIpFuncBorderOld )
- pic_new = mitkIpPicClone ( pic_old );
- else if ( border == mitkIpFuncBorderZero )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, 0 );
- pic_new->data = calloc ( _mitkIpPicElements ( pic_new ), pic_new->bpe/8 );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new->data == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialisation of pic_mask */
-
- pic_mask = mitkIpPicNew ();
- if ( pic_mask == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- pic_mask->type = mitkIpPicInt;
- pic_mask->bpe = 16;
- pic_mask->dim = dim_mask+1;
- for ( i = 0; i < dim_mask; i++ )
- pic_mask->n[i] = 3;
- pic_mask->n[dim_mask] = dim_mask;
-
- if ( dim_mask == 4 )
- pic_mask->data = mask4;
- else if ( dim_mask == 3 )
- pic_mask->data = mask3;
- else if ( dim_mask == 2 )
- pic_mask->data = mask2;
- else
- {
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialisation of vectors */
-
-
- for ( i = 0; i < dim_mask; i++ )
- n[i] = pic_mask->n[i] / 2 + 1;
- for ( i = dim_mask; i < _mitkIpPicNDIM; i++ )
- n[i] = 0;
-
- for ( i = 0; i < dim_mask; i++ )
- {
- end[i] = pic_old->n[i] - pic_mask->n[i] / 2;
- beg[i] = ( ( pic_mask->n[i] % 2 ) == 1 ) ?
- ( pic_mask->n[i] / 2 ) : ( pic_mask->n[i] / 2 - 1 );
- }
- for ( i = dim_mask; i < _mitkIpPicNDIM; i++ )
- beg[i] = 0;
-
- for ( i = dim_mask; i < pic_old->dim; i++ )
- end[i] = pic_old->n[i];
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- end[i] = beg[i] + 1;
-
- size [0] = 1;
- for ( i = 1; i < pic_old->dim; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
-
-
- /* allocate mask-structure */
-
- m = malloc ( sizeof ( mitkIpFuncMasc_t ) );
- if ( m == NULL )
- {
- mitkIpPicFree ( pic_new );
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- m->off_vekt = malloc ( _mitkIpPicElements( pic_mask ) * sizeof ( mitkIpInt4_t ) );
- if ( m->off_vekt == NULL )
- {
- mitkIpPicFree ( pic_new );
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- free ( m );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- m->mask_vekt = malloc ( _mitkIpPicElements( pic_mask ) * sizeof ( mitkIpFloat8_t ) );
- if ( m->mask_vekt == NULL )
- {
- mitkIpPicFree ( pic_new );
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- free ( m->off_vekt );
- free ( m );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* calculate offset vector for the compressed mask */
-
- m->length = 0;
-
- off_mask = 0;
- for ( i = 0; i < pic_mask->n[dim_mask] ; i++ )
- for ( ind[3] = -1; ind[3] < n[3]; ind[3]++ )
- for ( ind[2] = -1; ind[2] < n[2]; ind[2]++ )
- for ( ind[1] = -1; ind[1] < n[1]; ind[1]++ )
- for ( ind[0] = -1; ind[0] < n[0]; ind[0]++ )
- {
- if ( (( mitkIpInt2_t * )pic_mask->data)[off_mask] != 0 )
- {
- offset = 0;
- for ( j = 0; j < dim_mask; j++ )
- offset = offset + ind[j] * size[j];
- m->off_vekt[m->length] = offset;
- m->length++;
- }
- off_mask++;
- }
-
- /* remove elements that are zero from mask */
-
- pos = 0;
- sum = 0;
- for ( i = 0; i < m->length; i++ )
- {
- while ( (( mitkIpInt2_t * )pic_mask->data)[pos] == 0 ) pos++;
- m->mask_vekt[i] = ( mitkIpFloat8_t )(( mitkIpInt2_t * )pic_mask->data)[pos];
- sum = sum + fabs ( m->mask_vekt[i] );
- pos++;
- }
-
- sum = sum / ( 2 * dim_mask );
-
- mitkIpPicFORALL_6 ( GRAD, pic_old, pic_new, pic_mask, m, beg, end, dim_mask );
-
- free ( m->off_vekt );
- free ( m->mask_vekt );
- free ( m );
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-#endif
-
diff --git a/Utilities/IpFunc/Grav.c b/Utilities/IpFunc/Grav.c
deleted file mode 100644
index 623ce9243f..0000000000
--- a/Utilities/IpFunc/Grav.c
+++ /dev/null
@@ -1,159 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * This Function calculates the center of gravity of an region of
- * interest in an binary image
- */
-
-/** @brief calculates the center of gravity of an region of
- * interest in an binary image
- *
- * @param pic binary image: contains the region of interest
- *
- * @return pointer to the vector which contains the coordinates
- * of the center of gravity
- *
- * AUTHOR & DATE
- */
-
-
-
-/* include Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t *mitkIpFuncGrav ( mitkIpPicDescriptor *pic_old );
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of reflect-macro */
-
-#define GRAV( type, pic, index ) \
-{ \
- mitkIpUInt4_t i; \
- mitkIpUInt4_t no; \
- mitkIpUInt4_t offset_refl; \
- mitkIpInt4_t n[_mitkIpPicNDIM]; \
- \
- for ( i = 0; i < pic_old->dim; i++ ) \
- n[i] = pic_old->n[i]; \
- \
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ ) \
- n[i] = 1; \
- \
- no = 0; \
- offset_refl = 0; \
- for ( index[7] = 0; index[7] < n[7]; index[7]++ ) \
- \
- for ( index[6] = 0; index[6] < n[6]; index[6]++ ) \
- \
- for ( index[5] = 0; index[5] < n[5]; index[5]++ ) \
- \
- for ( index[4] = 0; index[4] < n[4]; index[4]++ ) \
- \
- for ( index[3] = 0; index[3] < n[3]; index[3]++ ) \
- \
- for ( index[2] = 0; index[2] < n[2]; index[2]++ ) \
- \
- for ( index[1] = 0; index[1] < n[1]; index[1]++ ) \
- \
- for ( index[0] = 0; index[0] < n[0]; index[0]++ ) \
- { \
- if ( (( type * )pic->data )[offset_refl] ) \
- { \
- for ( i = 0; i < pic->dim; i++ ) \
- { \
- gravity[i] = gravity[i] + index[i]; \
- } \
- no++; \
- } \
- offset_refl++; \
- } \
- \
- for ( i = 0; i < pic->dim; i++ ) gravity[i] = gravity[i]/no; \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpFloat8_t *mitkIpFuncGrav ( mitkIpPicDescriptor *pic_old )
-{
-
- mitkIpUInt4_t index_vect[_mitkIpPicNDIM]; /* loopindex-vector */
- mitkIpInt4_t n[_mitkIpPicNDIM]; /* number of pixels in each */
- /* dimension */
- mitkIpUInt4_t i; /* loop index */
- mitkIpFloat8_t *gravity;
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* initialisation of vectors */
-
- for ( i = 0; i < pic_old->dim; i++ )
- n[i] = pic_old->n[i];
-
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- n[i] = 1;
-
- for ( i = 0; i < _mitkIpPicNDIM; i++ )
- index_vect[i] = 0;
-
- gravity = ( mitkIpFloat8_t * ) malloc ( 8 * sizeof ( mitkIpFloat8_t ) );
- if ( gravity == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- for ( i = 0; i < _mitkIpPicNDIM; i++ )
- gravity[i] = 0.;
-
- mitkIpPicFORALL_1 ( GRAV, pic_old, index_vect )
-
- return gravity;
-}
-#endif
diff --git a/Utilities/IpFunc/Hist.c b/Utilities/IpFunc/Hist.c
deleted file mode 100644
index c7ce45a968..0000000000
--- a/Utilities/IpFunc/Hist.c
+++ /dev/null
@@ -1,174 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * this function calculates the greyvalue histogram of an image
- */
-
-/** this function calculates the greyvalue histogram of an image
- *
- * @param pic_old pointer to the image that should be inverted
- * @param min_gv min. greyvalue in histogram
- * @param max_gv max. greyvalue in histogram
- * @param hist pointer to the greyvalue histogram ( return value )
- * @param size_hist pointer to the number of elements in the histogram
- * ( result value )
- *
- * @return @arg @c mitkIpFuncERROR - if an error occured
- * @return @arg @c mitkIpFuncOK - if no error occured
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpInt4_t mitkIpFuncHist ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t min_gv,
- mitkIpFloat8_t max_gv,
- mitkIpUInt4_t **hist,
- mitkIpUInt4_t *size_hist ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncHist\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-
-/* definition of HIST-macro */
-
-#define HIST( type, pic, help, factor ) \
-{ \
- mitkIpUInt4_t i; \
- mitkIpUInt4_t no_elem; \
- mitkIpUInt4_t index; \
- \
- /* calculate histogram */ \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- index = ( mitkIpUInt4_t ) \
- ( factor * ( (( type * ) pic->data)[i] + ( type ) help) );\
- ( hist_help[index] )++; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpInt4_t mitkIpFuncHist ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t min_gv,
- mitkIpFloat8_t max_gv,
- mitkIpUInt4_t **hist,
- mitkIpUInt4_t *size_hist )
-{
- mitkIpUInt4_t *hist_help;
- mitkIpFloat8_t help; /* absolute of min_gv */
- mitkIpFloat8_t min, max; /* extreme greyvalues */
- mitkIpUInt4_t factor; /* factor to calculate histogram of */
- /* float images */
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( min_gv == 0 && max_gv == 0 )
- {
- if ( mitkIpFuncExtr ( pic_old, &min_gv, &max_gv ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- }
- else
- {
- if ( min_gv > max_gv )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( mitkIpFuncExtr ( pic_old, &min, &max ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( min_gv > min || max_gv < max )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
-
- /* calculate variables which are necessary to calculate histogram */
- /* index */
-
- help = fabs ( min_gv );
-
- if ( pic_old->type == mitkIpPicInt || pic_old->type == mitkIpPicUInt )
- factor = 1;
- else if ( pic_old->type == mitkIpPicFloat )
- factor = 1000;
- else
- {
- _mitkIpFuncSetErrno (mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate memory */
-
- *size_hist = factor * ( ( mitkIpUInt4_t ) max_gv + ( mitkIpUInt4_t ) help );
-
-/*hist = ( mitkIpUInt4_t ** ) malloc ( sizeof ( mitkIpUInt4_t * ) );*/
- *hist = ( mitkIpUInt4_t * ) calloc ( *size_hist+1, sizeof ( mitkIpUInt4_t ) );
- hist_help = *hist;
- if ( hist_help == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to calculate the histogram */
-
- mitkIpPicFORALL_2 ( HIST, pic_old, help, factor );
-
- return ( mitkIpFuncOK );
-}
-#endif
diff --git a/Utilities/IpFunc/Histo.c b/Utilities/IpFunc/Histo.c
deleted file mode 100644
index 5c3644ec4f..0000000000
--- a/Utilities/IpFunc/Histo.c
+++ /dev/null
@@ -1,180 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * this function calculates the greyvalue histogram of an image
- */
-
-/** this function calculates the greyvalue histogram of an image
- *
- * @param pic_old pointer to the image that should be inverted
- * @param min_gv min. greyvalue in histogram; if min_gv==max_gv==0
- * the min/max greyvalues are calculated
- * @param max_gv max. greyvalue in histogram
- * @param hist pointer to the greyvalue histogram ( return value )
- * @param size_hist pointer to the number of elements in the histogram
- * ( result value )
- *
- * @return @arg @c mitkIpFuncERROR - if an error occured
- * @return @arg @c mitkIpFuncOK - if no error occured
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpInt4_t mitkIpFuncHisto( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min_gv,
- mitkIpFloat8_t *max_gv,
- mitkIpUInt4_t **hist,
- mitkIpUInt4_t *size_hist ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of HIST-macro */
-
-#define HIST( type, pic, help, factor ) \
-{ \
- mitkIpUInt4_t i; \
- mitkIpUInt4_t no_elem; \
- mitkIpUInt4_t index; \
- \
- /* calculate histogram */ \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- index = ( mitkIpUInt4_t ) \
- ( factor * ( (( type * ) pic->data)[i] - ( type )*min_gv ) );\
- if ( ( index <= *size_hist ) ) \
- ( hist_help[index] )++; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpInt4_t mitkIpFuncHisto( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min_gv,
- mitkIpFloat8_t *max_gv,
- mitkIpUInt4_t **hist,
- mitkIpUInt4_t *size_hist )
-{
- mitkIpUInt4_t *hist_help;
- mitkIpFloat8_t help; /* absolute of min_gv */
- mitkIpFloat8_t min, max; /* extreme greyvalues */
- mitkIpUInt4_t factor; /* factor to calculate histogram of */
- /* float images */
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( *min_gv == 0 && *max_gv == 0 )
- {
- if ( mitkIpFuncExtr ( pic_old, min_gv, max_gv ) != mitkIpFuncOK )
- {
- printf("ipFunc: Probleme mit dem eingegebenen Intervall\n");
- return ( mitkIpFuncERROR );
- }
- }
- else
- {
- if ( *min_gv > *max_gv )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- printf("ipFunc: Probleme mit dem eingegebenen Intervall\n");
- return ( mitkIpFuncERROR );
- }
- if ( mitkIpFuncExtr ( pic_old, &min, &max ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( *min_gv < min || *max_gv > max )
- {
- printf("ipFunc: Probleme mit dem von ipFunc Extrema berechnete Intervall\n");
- printf("ipFunc: Von Extrema: %f %f \n", *min_gv, *max_gv);
- /*
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- */
- }
- }
-
- /* calculate variables which are necessary to calculate histogram */
- /* index */
-
- help = fabs ( *min_gv );
-
- if ( pic_old->type == mitkIpPicInt || pic_old->type == mitkIpPicUInt )
- factor = 1;
- else if ( pic_old->type == mitkIpPicFloat )
- factor = 1000;
- else
- {
- printf("ipFunc: Probleme mit dem von ipFunc Extrema berechnete Intervall\n");
- _mitkIpFuncSetErrno (mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate memory */
-
- *size_hist = 1 + factor * (mitkIpUInt4_t ) ( ( mitkIpInt4_t ) *max_gv - ( mitkIpInt4_t ) *min_gv );
-
-/*hist = ( mitkIpUInt4_t ** ) malloc ( sizeof ( mitkIpUInt4_t * ) );*/
- *hist = ( mitkIpUInt4_t * ) calloc ( *size_hist+1, sizeof ( mitkIpUInt4_t ) );
- hist_help = *hist;
- if ( hist_help == NULL )
- {
- printf("ipFunc: Probleme mit dem Allokieren von Platz\n");
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to calculate the histogram */
-
- mitkIpPicFORALL_2 ( HIST, pic_old, help, factor );
-
- return ( mitkIpFuncOK );
-}
-#endif
-
diff --git a/Utilities/IpFunc/HitMiss.c b/Utilities/IpFunc/HitMiss.c
deleted file mode 100644
index 1c358fe2c1..0000000000
--- a/Utilities/IpFunc/HitMiss.c
+++ /dev/null
@@ -1,132 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs the morphological hit and miss operation
- */
-
-/** @brief performs the morphological hit and miss operation
- *
- * @param pic_old pointer to original image
- * @param pic_masks pointer to a set of hit and miss masks
- * ( if pic_masks = NULL -> default masks are used )
- * @param border tells how the edge is transformed
- * @arg @c mitkIpFuncBorderOld original greyvalues
- * @arg @c mitkIpFuncBorderZero : edge is set to minimal greyvalue
- *
- * @return pointer to image after hit and miss operation
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncHitMiss ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_masks,
- mitkIpFuncFlagI_t border );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncHitMiss\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* ------------------------------------------------------------------ */
-/*
-** mitkIpFuncHitMiss
-*/
-/* ------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *mitkIpFuncHitMiss ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_masks,
- mitkIpFuncFlagI_t border )
-{
- mitkIpBool_t allocated=mitkIpFalse;
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpUInt1_t mask[] = /* hit and miss mask (edge detection) */
- { 0, 0, 0, 0, 1, 0, 0, 0, 0,
- 0, 1, 0, 0, 0, 0, 0, 0, 0,
- 0, 0, 0, 0, 1, 0, 0, 0, 0,
- 0, 0, 0, 0, 0, 1, 0, 0, 0,
- 0, 0, 0, 0, 1, 0, 0, 0, 0,
- 0, 0, 0, 0, 0, 0, 0, 1, 0,
- 0, 0, 0, 0, 1, 0, 0, 0, 0,
- 0, 0, 0, 1, 0, 0, 0, 0, 0,
- 0, 1, 0, 0, 0, 0, 0, 0, 0 };
-
- if ( pic_masks == NULL )
- {
- allocated = mitkIpTrue;
- pic_masks = mitkIpPicNew ();
- if ( pic_masks == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- pic_masks->dim = 3;
- pic_masks->type = mitkIpPicUInt;
- pic_masks->bpe = 8;
- pic_masks->n[0] = 3;
- pic_masks->n[1] = 3;
- pic_masks->n[2] = 8;
- pic_masks->data = mask;
- }
- pic_new = _mitkIpFuncHitMissI ( pic_old, pic_masks, border );
-
- if ( allocated )
- {
- pic_masks->data = NULL;
- mitkIpPicFree ( pic_masks );
- }
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-#endif
-
diff --git a/Utilities/IpFunc/HitMissI.c b/Utilities/IpFunc/HitMissI.c
deleted file mode 100644
index 834a412fe8..0000000000
--- a/Utilities/IpFunc/HitMissI.c
+++ /dev/null
@@ -1,314 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/* performs the morphological hit and miss operator
- *
- * FUNCTION DECLARATION
- * mitkIpPicDescriptor *_mitkIpFuncHitMissI( mitkIpPicDescriptor *pic_old,
- * mitkIpPicDescriptor *pic_masks,
- * mitkIpFuncFlagI_t border )
- *
- * PARAMETERS
- *
- * RETURN VALUES
- *
- * AUTHOR & DATE
- * Antje Schroeder 05.09.95
- *
- * UPDATES
- * a short history of the file
- *
- *---------------------------------------------------------------------
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncHitMissI\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-/* definition of macros */
-
-#define C_MASC( typ, pic_masks, m1, m2, end_m, beg_m1, beg_m2 ) \
-{ \
- mitkIpUInt4_t no_elem; \
- mitkIpUInt4_t i; /* loop variable */ \
- \
- /* copy pic_masks to mask_1 and mask_2 */ \
- \
- for ( i = 0; i < end_m; i++ ) \
- { \
- (( typ * )mask_1->data )[i] = (( typ * )pic_masks->data )[i + beg_m1]; \
- (( typ * )mask_2->data )[i] = (( typ * )pic_masks->data )[i + beg_m2]; \
- } \
- \
- /* check mask data */ \
- \
- no_elem = _mitkIpPicElements ( mask_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- if ( (( typ * )mask_1->data )[i] != 0 && \
- (( typ * )mask_2->data )[i] != 0 ) \
- { \
- mitkIpPicFree ( mask_1 ); \
- mitkIpPicFree ( mask_2 ); \
- mitkIpPicFree ( pic_1 ); \
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR ); \
- return ( mitkIpFuncERROR ); \
- } \
- \
- /* compress masks */ \
- \
- m1 = _mitkIpFuncCompressM ( mask_1, pic_old, mitkIpFuncNoReflect, beg, end ); \
- m2 = _mitkIpFuncCompressM ( mask_2, pic_old, mitkIpFuncNoReflect, beg, end ); \
- \
-}
-
-#define HITMISS( type_i, pic_old, pic_new, pic_inv ) \
-{ \
- type_i help; \
- mitkIpUInt4_t i; /* loop index */ \
- mitkIpUInt4_t end_m; /* loop index */ \
- mitkIpUInt4_t beg_m1; /* */ \
- mitkIpUInt4_t beg_m2; /* */ \
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */ \
- mitkIpInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* offset vector */ \
- mitkIpFloat8_t max, min; /* max and min possible greyvalue */ \
- \
- /* initialisation of vectors */ \
- \
- size [0] = 1; \
- for ( i = 1; i < _mitkIpPicNDIM; i++ ) \
- size[i] = size[i-1] * pic_old->n[i-1]; \
- size[pic_old->dim] = 0; \
- \
- \
- /* calculate max. and min. possible greyvalues */ \
- \
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min, &max ) != mitkIpFuncOK ) \
- { \
- mitkIpPicFree ( mask_1 ); \
- mitkIpPicFree ( mask_2 ); \
- mitkIpPicFree ( pic_1 ); \
- return ( mitkIpFuncERROR ); \
- } \
- \
- /* transformation of image */ \
- \
- end_m = _mitkIpPicElements ( pic_masks ) / pic_masks->n[dim] ; \
- for ( j = 0; j < pic_masks->n[dim] / 2; j++ ) \
- { \
- /* copy masks and compress them */ \
- \
- beg_m1 = 2 * j * end_m; \
- beg_m2 = beg_m1 + end_m; \
- mitkIpPicFORALL_5 ( C_MASC, pic_masks, m1, m2, end_m, beg_m1, beg_m2 ); \
- \
- for ( ind[7] = beg[7]; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = ind[7] * size[7]; \
- for ( ind[6] = beg[6]; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = ind[6] * size[6] + off[7]; \
- for ( ind[5] = beg[5]; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = ind[5] * size[5] + off[6]; \
- for ( ind[4] = beg[4]; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = ind[4] * size[4] + off[5]; \
- for ( ind[3] = beg[3]; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = ind[3] * size[3] + off[4]; \
- for ( ind[2] = beg[2]; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = ind[2] * size[2] + off[3]; \
- for ( ind[1] = beg[1]; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = ind[1] * size[1] + off[2]; \
- off[0] = beg[0] + off[1]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- help = (( type_i * ) \
- pic_old->data )[off[0]+ m1->off_vekt[0]]; \
- for ( i = 1; i < m1->length; i++ ) \
- { \
- help = help && \
- (( type_i * )pic_old->data ) \
- [m1->off_vekt[i]+off[0]]; \
- } \
- for ( i = 0; i < m2->length; i++ ) \
- { \
- help = help && \
- (( type_i * )pic_inv->data ) \
- [m2->off_vekt[i]+off[0]]; \
- } \
- (( type_i * )pic_new->data )[off[0]] = ( (( type_i * ) \
- pic_new->data )[off[0]] || ( type_i ) help ) * max;\
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- free ( m1->off_vekt ); \
- free ( m1->mask_vekt ); \
- free ( m1 ); \
- free ( m2->off_vekt ); \
- free ( m2->mask_vekt ); \
- free ( m2 ); \
- } \
-}
-
-
-/* ------------------------------------------------------------------------- */
-/*
-** mitkIpFuncHitMissI
-*/
-/* ------------------------------------------------------------------------- */
-
- mitkIpPicDescriptor *_mitkIpFuncHitMissI ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_masks,
- mitkIpFuncFlagI_t border )
-{
- mitkIpPicDescriptor *pic_inv; /* pointer to the inverted image */
- mitkIpPicDescriptor *pic_1; /* image after hit and miss */
- mitkIpPicDescriptor *mask_1; /* hit mask */
- mitkIpPicDescriptor *mask_2; /* miss mask */
- mitkIpInt4_t beg[_mitkIpPicNDIM]; /* */
- mitkIpInt4_t end[_mitkIpPicNDIM]; /* */
- mitkIpFuncMasc_t *m1, *m2; /* compressed masks */
- mitkIpUInt4_t dim; /* dimension of mask */
- mitkIpUInt4_t j; /* loop variable */
-
- /* check image data and mask data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( pic_masks ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* allocate memory for masks */
-
- dim = pic_masks->dim - 1;
- mask_1 = mitkIpPicCopyHeader ( pic_masks, NULL );
- mask_1->dim = dim;
- if ( mask_1 == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- mask_1->data = malloc ( _mitkIpPicSize ( mask_1 ) );
- if ( mask_1->data == NULL )
- {
- mitkIpPicFree ( mask_1 );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- mask_2 = mitkIpPicCopyHeader ( mask_1, NULL );
- if ( mask_2 == NULL )
- {
- mitkIpPicFree ( mask_1 );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- mask_2->data = malloc ( _mitkIpPicSize ( mask_2 ) );
- if ( mask_2->data == NULL )
- {
- mitkIpPicFree ( mask_1 );
- mitkIpPicFree ( mask_2 );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate images */
-
- if ( border == mitkIpFuncBorderOld )
- {
- pic_1 = mitkIpPicClone ( pic_old );
- memset ( pic_1->data, 0, _mitkIpPicElements ( pic_1 ) );
- }
- else if ( border == mitkIpFuncBorderZero )
- {
- pic_1 = mitkIpPicCopyHeader ( pic_old, 0 );
- pic_1->data = calloc ( _mitkIpPicElements ( pic_1 ), pic_1->bpe/8 );
- }
- else
- {
- mitkIpPicFree ( mask_1 );
- mitkIpPicFree ( mask_2 );
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_1 == NULL )
- {
- mitkIpPicFree ( mask_1 );
- mitkIpPicFree ( mask_2 );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_1->data == NULL )
- {
- mitkIpPicFree ( mask_1 );
- mitkIpPicFree ( mask_2 );
- mitkIpPicFree ( pic_1 );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- pic_inv = mitkIpFuncInv ( pic_old, NULL );
- if ( pic_inv == NULL )
- {
- mitkIpPicFree ( mask_1 );
- mitkIpPicFree ( mask_2 );
- mitkIpPicFree ( pic_1 );
- }
-
- mitkIpPicFORALL_2 ( HITMISS, pic_old, pic_1, pic_inv );
-
- mitkIpPicFree ( pic_inv );
- mitkIpPicFree ( mask_1 );
- mitkIpPicFree ( mask_2 );
-
- return ( pic_1 );
-}
diff --git a/Utilities/IpFunc/Inertia.c b/Utilities/IpFunc/Inertia.c
deleted file mode 100644
index 86a0afc0fe..0000000000
--- a/Utilities/IpFunc/Inertia.c
+++ /dev/null
@@ -1,299 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
- * mitkIpFuncInertia
- *---------------------------------------------------------------------
- * DESCRIPTION
- * function to calculate the moments of inertia of a region of
- * interest
- *
- * FUNCTION DECLARATION
- * mitkIpInt4_t mitkIpFuncInertia ( mitkIpPicDescriptor *pic_old,
- * mitkIpFloat8_t **eigen_vekt,
- * mitkIpFloat8_t **eigen_val )
- *
- * PARAMETERS
- * pic_old - pointer to an image structure which contains the ROI
- * eigen_vekt - contains the axis of inertia (spaltenweise)
- * eigen_val - eigenvalues of the tensor of inertia
- *
- * RETURN VALUES
- * mitkIpFuncOK - no error occured
- * mitkIpFuncERROR - an error occured
- *
- * UPDATES
- * update of Manu's program to calculate axis of inertia. It's a
- * function now, which can be used for images of different data
- * types and for images up to 8 dimensions now
- *
- * AUTHOR & DATE
- * Antje Schroeder 08.06.95
- *
- *---------------------------------------------------------------------
- */
-/* include Files */
-
-#include "mitkIpFuncP.h"
-
-#ifdef MESCHACH
-#include <float.h>
-
-/* definition of reflect-macro */
-
-#define GRAV( type, pic, index, s, s_diag, dist ) \
-{ \
- mitkIpUInt4_t i; \
- mitkIpUInt4_t no; \
- mitkIpUInt4_t offset_refl; \
- mitkIpInt4_t n[_mitkIpPicNDIM]; \
- \
- for ( i = 0; i < pic_old->dim; i++ ) \
- n[i] = pic_old->n[i]; \
- \
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ ) \
- n[i] = 1; \
- \
- offset_refl = 0; \
- for ( index[7] = 0; index[7] < n[7]; index[7]++ ) \
- \
- for ( index[6] = 0; index[6] < n[6]; index[6]++ ) \
- \
- for ( index[5] = 0; index[5] < n[5]; index[5]++ ) \
- \
- for ( index[4] = 0; index[4] < n[4]; index[4]++ ) \
- \
- for ( index[3] = 0; index[3] < n[3]; index[3]++ ) \
- \
- for ( index[2] = 0; index[2] < n[2]; index[2]++ ) \
- \
- for ( index[1] = 0; index[1] < n[1]; index[1]++ ) \
- \
- for ( index[0] = 0; index[0] < n[0]; index[0]++ ) \
- { \
- if ( (( type * )pic->data )[offset_refl] ) \
- { \
- for ( i = 0; i < pic->dim; i++ ) \
- { \
- dist[i] = index[i] - gravity[i]; \
- s_diag[i] = s_diag[i] + dist[i] * dist[i]; \
- } \
- \
- for ( i = 0; i < pic->dim; i++ ) \
- for ( j = 0; j < pic->dim; j++ ) \
- s[i*pic->dim+j] = s[i*pic->dim+j] - dist[i] * dist[j];\
- } \
- offset_refl++; \
- } \
- \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpInt4_t mitkIpFuncInertia ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t **eigen_vekt,
- mitkIpFloat8_t **eigen_val )
-{
-
- mitkIpUInt4_t index_vect[_mitkIpPicNDIM]; /* loopindex-vector */
- mitkIpInt4_t n[_mitkIpPicNDIM]; /* number of pixels in each */
- /* dimension */
- mitkIpUInt4_t i, j; /* loop index */
- mitkIpFloat8_t *gravity; /* center of gravity */
- mitkIpFloat8_t *help_vekt; /* pointer to eigen_vekt */
- mitkIpFloat8_t *help_val; /* pointer to eigen_val */
- MAT *ev; /* eigenvector */
- MAT *tt; /* tensor of inertia */
- VEC *ew; /* eigenvalue */
- mitkIpFloat8_t *s, *s_diag, *dist; /* used to calculate tt */
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* initialisation of vectors */
-
- for ( i = 0; i < pic_old->dim; i++ )
- n[i] = pic_old->n[i];
-
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- n[i] = 1;
-
- for ( i = 0; i < _mitkIpPicNDIM; i++ )
- index_vect[i] = 0;
-
- /* memory allocation */
-
- gravity = ( mitkIpFloat8_t * ) malloc ( pic_old->dim * sizeof ( mitkIpFloat8_t ) );
- if ( gravity == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- dist = ( mitkIpFloat8_t * ) malloc ( pic_old->dim * sizeof ( mitkIpFloat8_t ) );
- if ( dist == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- free ( gravity );
- return ( mitkIpFuncERROR );
- }
-
- s_diag = ( mitkIpFloat8_t * ) malloc ( pic_old->dim * sizeof ( mitkIpFloat8_t ) );
- if ( s_diag == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- free ( gravity );
- free ( dist );
- return ( mitkIpFuncERROR );
- }
-
- s = ( mitkIpFloat8_t * ) malloc ( pic_old->dim * pic_old->dim * sizeof ( mitkIpFloat8_t ) );
- if ( s == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- free ( gravity );
- free ( dist );
- free ( s_diag );
- return ( mitkIpFuncERROR );
- }
-
- tt = m_get ( pic_old->dim, pic_old->dim );
- if ( tt == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- free ( gravity );
- free ( dist );
- free ( s_diag );
- free ( s );
- return ( mitkIpFuncERROR );
- }
-
- ev = m_get ( pic_old->dim, pic_old->dim );
- if ( ev == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- free ( gravity );
- free ( dist );
- free ( s_diag );
- free ( s );
- M_FREE ( tt );
- return ( mitkIpFuncERROR );
- }
-
- ew = v_get ( pic_old->dim-1 );
- if ( ew == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- free ( gravity );
- free ( dist );
- free ( s_diag );
- free ( s );
- M_FREE ( tt );
- M_FREE ( ev );
- return ( mitkIpFuncERROR );
- }
-
- /* calculate center of gravity */
-
- gravity = mitkIpFuncGrav ( pic_old );
-
- /* Initialization of vectors */
-
- for ( i = 0; i < pic_old->dim; i++ )
- {
- s_diag[i] = 0.;
- dist[i] = 0.;
- for ( j = 0; j < pic_old->dim; j++ )
- s[i*pic_old->dim+j] = 0.;
- }
-
- /* preparation for calculating the tensor of inertia */
-
- mitkIpPicFORALL_4 ( GRAV, pic_old, index_vect, s, s_diag, dist )
-
- /* calculate tensor of inertia */
-
- for ( i = 0; i < pic_old->dim; i++ )
- {
- tt->me[i][i] = 0.;
- for ( j = 0; j < pic_old->dim; j++ )
- {
- if ( i < j )
- tt->me[i][j] = s[i*pic_old->dim+j];
- else if ( j < i )
- tt->me[i][j] = s[j*pic_old->dim+i];
- if ( i != j )
- tt->me[i][i] = tt->me[i][i] + s_diag[j];
- }
- }
-
- /* calculate eigenvectors and eigenvalues of the tensor of inertia */
-
- ew = symmeig ( tt, ev, ew );
-
- *eigen_vekt = ( mitkIpFloat8_t * ) malloc ( pic_old->dim * pic_old->dim * sizeof ( mitkIpFloat8_t ) );
- help_vekt = *eigen_vekt;
- *eigen_val = ( mitkIpFloat8_t * ) malloc ( pic_old->dim * sizeof ( mitkIpFloat8_t ) );
- help_val = *eigen_val;
-
- for ( i = 0; i < pic_old->dim; i++ )
- {
- help_val[i] = ew->ve[i];
- for ( j = 0; j < pic_old->dim; j++ )
- help_vekt[i*pic_old->dim+j] = ev->me[i][j];
- }
-
- M_FREE ( tt );
- M_FREE ( ev );
- V_FREE ( ew );
- free ( s );
- free ( dist );
- free ( s_diag );
- free ( gravity );
-
- return mitkIpFuncOK;
-}
-#endif
diff --git a/Utilities/IpFunc/Inv.c b/Utilities/IpFunc/Inv.c
deleted file mode 100644
index f498a9514c..0000000000
--- a/Utilities/IpFunc/Inv.c
+++ /dev/null
@@ -1,133 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
-* this function inverts the greyvalues of an image
-*/
-
-/** @brief inverts the greyvalues of an image
- *
- * @param pic_old pointer to the image that should be inverted
- * @param pic_return memory which could be used for pic_new. If
- * pic_retrun == NULL new memory is allocated
- *
- * @return pointer to the inverted image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncInv ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncInv\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of invert-macro */
-
-#define INV( type, pic ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- type help; \
- \
- /* calculate min. and max. */\
- \
- type max = ( ( type * ) pic->data ) [0]; \
- type min = ( ( type * ) pic->data ) [0]; \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 1; i < no_elem; i++ ) \
- { \
- help = ( ( type * ) pic->data ) [i]; \
- max = ( help > max ) ? help : max; \
- min = ( help < min ) ? help : min; \
- } \
- \
- /* invert greyvalues */\
- \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type * ) pic_new->data ) [i] = \
- max + min - (( type * ) pic->data ) [i]; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncInv ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* inverted picture */
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* create a new picture, copy the header, allocate memory */
-
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* macro to invert the picture (for all data types) */
-
- mitkIpPicFORALL ( INV, pic_old );
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/LN.c b/Utilities/IpFunc/LN.c
deleted file mode 100644
index a5c73ce5ef..0000000000
--- a/Utilities/IpFunc/LN.c
+++ /dev/null
@@ -1,222 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function transforms the greyvalues by a ln-function
- * (y = a ln (x+1))
- */
-
-/** @brief transforms the greyvalues by a ln-function
- * (y = a ln (x+1))
- *
- * @param pic_old pointer to the original image
- *
- * @return pointer to the transformed image
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncLN ( mitkIpPicDescriptor *pic_old );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncLN\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-/* definition of macros */
-
-#define LN( type, pic, max_gv ) \
-{ \
- mitkIpUInt4_t i; /* loopindex */\
- mitkIpUInt4_t no_elem; /* number of pixels */\
- mitkIpFloat8_t a; /* factor to calculate the logaritm */\
- \
- a = max_gv / log ( max_gv + 1. ); \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- (( type * )pic_new->data )[i] = \
- ( type ) ( a * log ( 1. + (( type * )pic->data )[i] ) ); \
-}
-
-/* ------------------------------------------------------------------------ */
-/*
-** function mitkIpFuncLN
-*/
-/* ------------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *mitkIpFuncLN ( mitkIpPicDescriptor *pic_old )
-{
- mitkIpFloat8_t min_gv, max_gv; /* max and min posiible greyvalues */
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t no_elem; /* loop index */
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max. and min. possible greyvalues */
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* check datatype of image */
-
- no_elem = _mitkIpPicElements ( pic_old );
- if ( pic_old->type == mitkIpPicUInt )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->data = malloc ( _mitkIpPicSize ( pic_old ) );
-
- if ( ( pic_new != NULL ) && ( pic_new->data != NULL ) )
- {
- mitkIpPicFORALL_1 ( LN, pic_old, max_gv );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
-
- /* mitkIpPicInt images are copied to mitkIpPicUInt iamges to avoid negative */
- /* greyvalues */
-
- else if ( pic_old->type == mitkIpPicInt )
- {
- pic_new = mitkIpPicNew ();
- if ( pic_new != NULL )
- {
- pic_new->type = mitkIpPicUInt;
- pic_new->bpe = pic_old->bpe;
- pic_new->dim = pic_old->dim;
- for ( i = 0; i < pic_new->dim; i++ ) pic_new->n[i] = pic_old->n[i];
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* transform integer image to unsigned integer image */
-
- if ( pic_new->bpe == 8 )
- {
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpUInt1_t * )pic_new->data )[i] =
- (( mitkIpInt1_t * )pic_old->data )[i] - min_gv;
- }
-
- else if ( pic_new->bpe == 16 )
- {
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpUInt2_t * )pic_new->data )[i] =
- (( mitkIpInt2_t * )pic_old->data )[i] - min_gv;
- }
-
- else if ( pic_new->bpe == 32 )
- {
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpUInt4_t * )pic_new->data )[i] =
- (( mitkIpInt4_t * )pic_old->data )[i] - min_gv;
- }
-
- else
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- max_gv = max_gv - min_gv;
-
- mitkIpPicFORALL_1 ( LN, pic_new, max_gv );
-
- /* transform unsigned integer image to an integer image */
-
- pic_new->type = mitkIpPicInt;
-
- if ( pic_new->bpe == 8 )
- {
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpInt1_t * )pic_new->data )[i] =
- (( mitkIpUInt1_t * )pic_new->data )[i] + min_gv;
- }
-
- else if ( pic_new->bpe == 16 )
- {
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpInt2_t * )pic_new->data )[i] =
- (( mitkIpUInt2_t * )pic_new->data )[i] + min_gv;
- }
-
- else if ( pic_new->bpe == 32 )
- {
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpInt4_t * )pic_new->data )[i] =
- (( mitkIpUInt4_t * )pic_new->data )[i] + min_gv;
- }
-
- }
-
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-#endif
diff --git a/Utilities/IpFunc/Label.c b/Utilities/IpFunc/Label.c
deleted file mode 100644
index 27e163fd5e..0000000000
--- a/Utilities/IpFunc/Label.c
+++ /dev/null
@@ -1,363 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * This functions looks for areas in an image with the same greyvalue.
- * Each of these areas gets it's own greyvalue.
- */
-
-/** This functions looks for areas in an image with the same greyvalue.
- * Each of these areas gets it's own greyvalue.
- *
- * CAUTION! In case of many small regions to label, the routine may
- * break down without exception handling, if the number of labels is
- * running out.
- *
- * @param pic_old pointer to original image structure
- * @param no_label number of different labels (return value)
- *
- * @return pointer to new image
- *
- * USES
- * function _mitkIpFuncError - checks image data
- * function _mitkIpFuncExtr - calculates extreme greyvalues
- * function _mitkIpFuncHist - calculates greyvalue histogram
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncLabel ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *no_lab );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncLabel\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of macros */
-
-#define LABEL1( type, pic_old, pic_new, no_label, type_new ) \
-{ \
- mitkIpUInt4_t i, j; /* loop index */ \
- mitkIpUInt4_t offset; /* offset of actual pixel */ \
- mitkIpBool_t in_lab; /* currently in label flag */ \
- mitkIpUInt4_t end; \
- \
- offset = 0; \
- no_label = 0; \
- \
- end = _mitkIpPicElements ( pic_old ) / pic_old->n[0]; \
- for ( j = 0; j < end; j++ ) \
- for ( i = 0, in_lab = mitkIpFalse; i < pic_old->n[0]; i++ ) \
- { \
- /*if ( (( type * )pic_old->data )[offset] == max ) */ \
- if ( (( type * )pic_old->data )[offset] ) \
- { \
- if ( in_lab ) \
- (( type_new * )pic_new->data )[offset] = \
- (type_new) no_label; \
- else \
- { \
- in_lab = mitkIpTrue; \
- no_label++; \
- (( type_new * )pic_new->data )[offset] = \
- (type_new) no_label; \
- } \
- } \
- else in_lab = mitkIpFalse; \
- offset++; \
- } \
-}
-
-#define LABEL2( type, pic_new, a, a_new, a_sort, size ) \
-{ \
- mitkIpUInt4_t aa; /* actual anchestor */ \
- mitkIpUInt4_t al; /* actual label */ \
- mitkIpUInt4_t i, j, k, l; /* loop index */ \
- mitkIpUInt4_t end; \
- mitkIpInt4_t off; /* offset of actual pixel */ \
- mitkIpInt4_t dist; /* distnace between actual and */ \
- /* neighbour pixel */ \
- \
- for ( l = 1; l < pic_new->dim; l++ ) \
- { \
- dist = size[l]; \
- end = _mitkIpPicElements ( pic_new ) / size[l+1]; \
- for ( k = 0; k < end; k++ ) \
- for ( j = 1; j < pic_new->n[l]; j++ ) \
- { \
- off = j * size[l] + k * size[l+1]; \
- for ( i = 0; i < size[l]; i++ ) \
- { \
- /* calculate actual ancestors */ \
- \
- al = (( type * )pic_new->data ) [off]; \
- aa = (( type * )pic_new->data ) [off - dist]; \
- \
- off++; \
- \
- /* if this is a line label */ \
- \
- if ( al ) \
- { \
- if ( aa ) \
- { \
- /* test whether anchestor found */ \
- if ( a[al] == al ) \
- a[al] = a_new[a[aa]]; \
- else if ( a[al] != a[a[al]] ) \
- a[al] = a[a[al]]; \
- else if ( a[al] != a_new[a[aa]] ) \
- a_new[a[aa]] = a[al]; \
- } \
- } \
- } \
- } \
- } \
-}
-
-#define LABEL3( type, pic_new, a, a_sort ) \
-{ \
- mitkIpUInt4_t i; /* loop index */ \
- mitkIpUInt4_t no_elem; \
- \
- no_elem = _mitkIpPicElements ( pic_new ); \
- for ( i = 0; i < no_elem; i++ ) \
- (( type * )pic_new->data )[i] = \
- ( type ) a_sort[a[( mitkIpUInt4_t ) (( type * )pic_new->data )[i]]]; \
-}
-
-
-/* ------------------------------------------------------------------- */
-/*
-** mitkIpFuncLabel
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncLabel ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *no_lab )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to new image structure */
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t *a; /* pointer to list with all anchestors*/
- mitkIpUInt4_t *a_new; /* look up table for new labels */
- mitkIpUInt4_t *a_sort; /* pointer to list of sorted anchest. */
- mitkIpUInt4_t no_label; /* number of labels */
- mitkIpUInt4_t new_label; /* */
- mitkIpUInt4_t size[_mitkIpPicNDIM];
- mitkIpFloat8_t min, max; /* extreme greyvalues in image */
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate extreme greyvalues in image */
- if ( mitkIpFuncExtr ( pic_old, &min, &max ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* check whether image is binary */
- /*
- mitkIpFuncHist ( pic_old, min, max, &hist, &size_hist );
- if ( hist == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- i = 0;
- no_gv = 0;
- while ( i <= ( mitkIpUInt4_t ) ( fabs ( min ) + max ) && no_gv < 3 )
- {
- if ( hist [i] != 0 ) no_gv++;
- i++;
- }
-
- if ( no_gv != 2 )
- {
- free ( hist );
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- */
-
- /* allocate memory for new image */
-
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->type = mitkIpPicInt;
- pic_new->bpe = 16;
- pic_new->data = calloc ( _mitkIpPicElements ( pic_new ), pic_new->bpe / 8 );
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* preparation of image */
-
- mitkIpPicFORALL_3 ( LABEL1, pic_old, pic_new, no_label, mitkIpInt2_t );
-
- if(no_label>SHRT_MAX)
- {
- mitkIpPicFree(pic_new);
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->type = mitkIpPicUInt;
- pic_new->bpe = 32;
- pic_new->data = calloc ( _mitkIpPicElements ( pic_new ), pic_new->bpe / 8 );
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- mitkIpPicFORALL_3 ( LABEL1, pic_old, pic_new, no_label, mitkIpUInt4_t );
- }
-
- /* allocation and initialisation of vectors */
-
- a = malloc ( ( no_label + 1 ) * sizeof ( mitkIpUInt4_t ) );
- if ( a == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- a_new = malloc ( ( no_label + 1 ) * sizeof ( mitkIpUInt4_t ) );
- if ( a_new == NULL )
- {
- free ( a );
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- a_sort = malloc ( ( no_label + 1 ) * sizeof ( mitkIpUInt4_t ) );
- if ( a_sort == NULL )
- {
- free ( a );
- free ( a_new );
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- for ( i = 0; i <= no_label; i++ )
- {
- a[i] = i;
- a_new[i] = i;
- a_sort[i] = 0;
- }
-
- size[0] = 1;
- for ( i = 1; i <= pic_old->dim; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
- for ( i = pic_old->dim + 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[pic_old->dim];
-
- /* change anchestor list */
-
- mitkIpPicFORALL_4 ( LABEL2, pic_new, a, a_new, a_sort, size );
-
- /* replace anchestors with new anchestors */
-
- for ( i = 0; i <= no_label; i++ )
- {
- a[i] = a_new[a[i]];
- }
- for ( i = 0; i <= no_label; i++ )
- {
- a[i] = _ipGetANew ( a_new, a[i] );
- }
-
- /*
- ** replace image with new labels
- */
-
- /* hit used labels with 1 */
-
- for ( i = 0; i < no_label; i++ ) a_sort[a[i]] = 1;
-
- /* write new ascending labels to a_sort */
-
- for ( i = 0, new_label = 0; i <= no_label; i++ )
- {
- if ( a_sort[i] )
- {
- new_label++;
- a_sort[i] = new_label;
- }
- }
-
- /* renumber pixels with new labels */
-
- mitkIpPicFORALL_2 ( LABEL3, pic_new, a, a_sort );
-
- /**no_lab = no_label;*/
-
- *no_lab = new_label;
-
- if((new_label<=SHRT_MAX) && ( pic_new->bpe != 16 ))
- {
- mitkIpPicDescriptor * tmp;
- tmp=mitkIpFuncConvert(pic_new, mitkIpPicInt, 16);
- mitkIpPicFree(pic_new);
- pic_new=tmp;
- }
-
- /* free memory */
-
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- free ( a );
- free ( a_new );
- free ( a_sort );
- return ( pic_new );
-
-}
-#endif
-
diff --git a/Utilities/IpFunc/Laplace.c b/Utilities/IpFunc/Laplace.c
deleted file mode 100644
index c1c0ff67a9..0000000000
--- a/Utilities/IpFunc/Laplace.c
+++ /dev/null
@@ -1,150 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * This function performs a filtering with a 2D or 3D Laplace filtering
- * mask
- */
-
-/** This function performs a filtering with a 2D or 3D Laplace filtering
- * mask
- *
- * @param pic_old pointer to the image that should be convolved
- * @param dim_mask dimension of filtering mask
- * @param border tells how the edge is transformed
- * @arg @c mitkIpFuncBorderOld : original greyvalues
- * @arg @c mitkIpFuncBorderZero : edge is set to minimal greyvalue
- *
- * @return pointer to the transformed image
- *
- * USES
- * function mitkIpFuncConv: convolves image with mask
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncLaplace( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncLaplace\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-mitkIpPicDescriptor *mitkIpFuncLaplace( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border )
-{
-
- mitkIpPicDescriptor *pic_new; /* convolved image */
- mitkIpPicDescriptor *pic_mask; /* laplace mask */
- mitkIpUInt4_t i; /* loop index */
- mitkIpInt2_t laplace2[] = /* 2D laplace-mask */
- { 0, -1, 0, -1, 4, -1, 0, -1, 0 };
- mitkIpInt2_t laplace3[] = /* 3D laplace-mask */
- { 0, 0, 0, 0, -1, 0, 0, 0, 0,
- 0, -1, 0, -1, 6, -1, 0, -1, 0,
- 0, 0, 0, 0, -1, 0, 0, 0, 0 };
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( pic_old->dim < dim_mask || dim_mask < 2 || dim_mask > 3 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialisation of pic_mask */
-
- pic_mask = mitkIpPicNew ();
- if ( pic_mask == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- pic_mask->type = mitkIpPicInt;
- pic_mask->bpe = 16;
- pic_mask->dim = dim_mask;
- for ( i = 0; i < dim_mask; i++ )
- pic_mask->n[i] = 3;
-
- if ( dim_mask == 3 )
- {
- pic_mask->data = laplace3;
- }
- else if ( dim_mask == 2 )
- {
- pic_mask->data = laplace2;
- }
- else
- {
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* function to convolve image with mask */
-
- pic_new = mitkIpFuncConv ( pic_old, pic_mask, border );
-
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/LevWind.c b/Utilities/IpFunc/LevWind.c
deleted file mode 100644
index 07174c8534..0000000000
--- a/Utilities/IpFunc/LevWind.c
+++ /dev/null
@@ -1,137 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs a level-window operation
- */
-
-/** @brief this function performs a level-window operation
- *
- * All greyvalues which are not included in the
- * intervall [level-0.5*window, level+0.5*window] are set to
- * the minimal (if greyvalue<level-0.5*window) or maximal
- * greyvalue (if greyvalue>level-0.5*window), respectively.
- *
- * @param pic_old pointer to original image
- * @param level greyvalue that forms center of the window
- * @param window length of window
- * @param pic_return memory which could be used for pic_new. If
- * pic_retrun == NULL new memory is allocated
- *
- * @return pointer to the transformed image
- *
- * @par Uses
- * @arg mitkIpFuncSelMM
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncLevWin ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t level,
- mitkIpFloat8_t window,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncLevWin\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* ------------------------------------------------------------------------- */
-/*
-** mitkIpFunclevWin
-*/
-/* ------------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncLevWin ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t level,
- mitkIpFloat8_t window,
- mitkIpPicDescriptor *pic_return )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpFloat8_t gv_low; /* lower greyvalue of range */
- mitkIpFloat8_t gv_up; /* upper greyvalue of range */
- mitkIpFloat8_t max_gv, min_gv; /* max and min possible greyvalues */
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max and min possible greyvalues */
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
- /* calculate lower and upper greyvalue of range with level and window */
-
- gv_low = level - 0.5 * window;
-
- if ( gv_low < min_gv )
- gv_low = min_gv;
- else if ( gv_low > max_gv )
- gv_low = max_gv;
-
- gv_up = level + 0.5 * window;
-
- if ( gv_up < min_gv )
- gv_up = min_gv;
- else if ( gv_up > max_gv )
- gv_up = max_gv;
-
- /* calculate new image in Function mitkIpFuncSelect */
-
- pic_new = mitkIpFuncSelMM ( pic_old, gv_low, gv_up, pic_return );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
-
- return ( pic_new );
-}
-#endif
-
diff --git a/Utilities/IpFunc/Log.c b/Utilities/IpFunc/Log.c
deleted file mode 100644
index 79429e9119..0000000000
--- a/Utilities/IpFunc/Log.c
+++ /dev/null
@@ -1,213 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this functions transforms the greyvalues of an image with a lg-function
- * (y = a lg (x+1))
- */
-
-/** this functions transforms the greyvalues of an image with a lg-function
- * (y = a lg (x+1))
- * @param pic_old pointer to original image
- *
- * @return pointer to transformed image
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncLog ( mitkIpPicDescriptor *pic_old );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncLog\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-/* definition of macros */
-
-#define LOG( type, pic, max_gv ) \
-{ \
- mitkIpUInt4_t i; /* loopindex */\
- mitkIpUInt4_t no_elem; /* */\
- mitkIpFloat8_t a; /* factor to calculate the logaritm */\
- \
- a = ( max_gv ) / log10 ( max_gv + 1 ); \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- (( type * )pic_new->data )[i] = \
- ( type ) ( a * log10 ( 1. + (( type * )pic->data )[i] ) ); \
-}
-
-/* ------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *mitkIpFuncLog ( mitkIpPicDescriptor *pic_old )
-{
- mitkIpFloat8_t min_gv, max_gv; /* max and min posiible greyvalues */
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t no_elem; /* loop index */
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max. and min. possible greyvalues */
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* check datatype of image */
-
- no_elem = _mitkIpPicElements ( pic_old );
- if ( pic_old->type == mitkIpPicUInt )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->data = malloc ( _mitkIpPicSize ( pic_old ) );
-
- if ( ( pic_new != NULL ) && ( pic_new->data != NULL ) )
- {
- mitkIpPicFORALL_1 ( LOG, pic_old, max_gv );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
-
- /* copy integer image to usigned integer image to avoid negative greyvalues*/
-
- else if ( pic_old->type == mitkIpPicInt )
- {
- pic_new = mitkIpPicNew ();
- if ( pic_new != NULL )
- {
- pic_new->type = mitkIpPicUInt;
- pic_new->bpe = pic_old->bpe;
- pic_new->dim = pic_old->dim;
- for ( i = 0; i < pic_new->dim; i++ ) pic_new->n[i] = pic_old->n[i];
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* transform integer image to unsigned integer image */
-
- if ( pic_new->bpe == 8 )
- {
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpUInt1_t * )pic_new->data )[i] =
- (( mitkIpInt1_t * )pic_old->data )[i] - min_gv;
- }
-
- else if ( pic_new->bpe == 16 )
- {
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpUInt2_t * )pic_new->data )[i] =
- (( mitkIpInt2_t * )pic_old->data )[i] - min_gv;
- }
-
- else if ( pic_new->bpe == 32 )
- {
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpUInt4_t * )pic_new->data )[i] =
- (( mitkIpInt4_t * )pic_old->data )[i] - min_gv;
- }
-
- else
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- max_gv = max_gv - min_gv;
-
- mitkIpPicFORALL_1 ( LOG, pic_new, max_gv );
-
- /* transform unsigned integer image to an integer image */
-
- pic_new->type = mitkIpPicInt;
- if ( pic_new->bpe == 8 )
- {
- for ( i = 0; i < no_elem; i++ );
- (( mitkIpInt1_t * )pic_new->data )[i] =
- (( mitkIpUInt1_t * )pic_new->data )[i] + min_gv;
- }
-
- else if ( pic_new->bpe == 16 )
- {
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpInt2_t * )pic_new->data )[i] =
- (( mitkIpUInt2_t * )pic_new->data )[i] + min_gv;
- }
-
- else if ( pic_new->bpe == 32 )
- {
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpInt4_t * )pic_new->data )[i] =
- (( mitkIpUInt4_t * )pic_new->data )[i] + min_gv;
- }
-
- }
-
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- return ( pic_new );
-}
-#endif
-
diff --git a/Utilities/IpFunc/MakePicName.c b/Utilities/IpFunc/MakePicName.c
deleted file mode 100644
index ef91a62910..0000000000
--- a/Utilities/IpFunc/MakePicName.c
+++ /dev/null
@@ -1,100 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function inserts an extension into a filename
- */
-
-/** @brief inserts an extension into a filename
- *
- * @warning not tested
- *
- * @param pic_name file name of input image
- * @param extension extension which shoulb be inserted into the filename
-
- * @return name for the file for the output image
- *
- * AUTHOR & DATE
- */
-char *mitkIpFuncMakePicName ( char *pic_name, char *extension );
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-#include <string.h>
-#include <stdio.h>
-#include <stdlib.h>
-
-#define NAME_MAX 40
-
-
-/* ===================================================================*/
-/* */
-/* MakePicName */
-/* */
-/* ===================================================================*/
-
-
-char *mitkIpFuncMakePicName ( char *pic_name, char *extension )
-{
-
- char *result_name;
- int length, pos;
-
- if ( pic_name == NULL || extension == NULL )
- return NULL;
-
- length = strlen ( pic_name ) + strlen ( extension ) + 5;
-
- result_name = ( char * ) malloc ( length * sizeof ( char ) );
- if ( result_name == NULL ) return NULL;
-
- pos = strstr ( pic_name, ".pic" ) - pic_name;
- if ( pos >= 0 )
- strncpy ( result_name, pic_name, pos );
- else
- strcpy ( result_name, pic_name );
-
- strcat ( result_name, extension );
- strcat ( result_name, ".pic" );
-
- return ( result_name );
-}
diff --git a/Utilities/IpFunc/Malloc.c b/Utilities/IpFunc/Malloc.c
deleted file mode 100644
index fab1b3a4f8..0000000000
--- a/Utilities/IpFunc/Malloc.c
+++ /dev/null
@@ -1,135 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function allocates the memory for a new image depending on the
- * parameter pic_return. If pic_return is equal NULL, new memory is
- * allocated otherwise it is reused.
- */
-
-/** this function allocates the memory for a new image depending on the
- * parameter pic_return. If pic_return is equal NULL, new memory is
- * allocated otherwise it is reused.
- *
- * @param pic_old pointer to original image
- * @param pic_return pointer to the memory which should be reused
- * @param over_write tells whether the memory could be reused
- * @arg @c mitkIpTrue => memory could be reused
- * @arg @c mitkIpFalse => new memory must be allocated
- *
- * @return pointer to the memory for transformed image
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *_mitkIpFuncMalloc ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return,
- mitkIpBool_t over_write );
-
-#ifndef DOXYGEN_IGNORE
-
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/*
-** mitkIpFuncMalloc
-*/
-
-mitkIpPicDescriptor *_mitkIpFuncMalloc ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return,
- mitkIpBool_t over_write )
-{
- mitkIpBool_t okay=mitkIpTrue;
- mitkIpUInt4_t i;
-
- if ( pic_return == NULL || ( !over_write ) )
- {
- pic_return = mitkIpPicCopyHeader ( pic_old, 0 );
- if ( pic_return == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- pic_return->data = calloc ( _mitkIpPicElements ( pic_old ), pic_old->bpe/8 );
- if ( pic_return->data == NULL )
- {
- mitkIpPicFree ( pic_return );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
- else
- {
- if ( pic_old->type != pic_return->type ) okay = mitkIpFalse;
- if ( pic_old->bpe != pic_return->bpe ) okay = mitkIpFalse;
- if ( pic_old->dim != pic_return->dim ) okay = mitkIpFalse;
- for ( i = 0; i < pic_old->dim; i++ )
- if ( pic_old->n[i] != pic_return->n[i] ) okay = mitkIpFalse;
- }
-
- if ( !okay )
- {
- mitkIpPicFree ( pic_return );
- pic_return = mitkIpPicCopyHeader ( pic_old, 0 );
- if ( pic_return == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- pic_return->data = calloc ( _mitkIpPicElements ( pic_old ), pic_old->bpe/8 );
- if ( pic_return->data == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
-
- return ( pic_return );
-}
-#endif
-
diff --git a/Utilities/IpFunc/Mean.c b/Utilities/IpFunc/Mean.c
deleted file mode 100644
index 9c17e35637..0000000000
--- a/Utilities/IpFunc/Mean.c
+++ /dev/null
@@ -1,106 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the mean greyvalue of all greyvalues
- * in an image
- */
-
-/** this function calculates the mean greyvalue of all greyvalues
- * in an image
- *
- *
- * @param pic pointer to the image
- *
- * @return mean greyvalue
- *
- * AUTHOR & DATE
- */
-
-/* include-files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncMean ( mitkIpPicDescriptor *pic );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncMean\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of extreme value macro */
-
-#define MEAN( type, pic, mean ) \
- { \
- mitkIpUInt4_t i, no_elem; \
- \
- mean = 0.; \
- no_elem = _mitkIpPicElements ( pic ); \
- \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- mean = ( ( type * ) pic->data ) [i] + mean; \
- } \
- mean = mean / _mitkIpPicElements ( pic ); \
- }
-
-/* ========================================================== */
-/*
-*/
-/* ========================================================== */
-
-mitkIpFloat8_t mitkIpFuncMean ( mitkIpPicDescriptor *pic )
-{
-
- mitkIpFloat8_t mean = 0.0;
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- mitkIpPicFORALL_1( MEAN, pic, mean )
-
- return( mean );
-}
-#endif
-
diff --git a/Utilities/IpFunc/MeanC.c b/Utilities/IpFunc/MeanC.c
deleted file mode 100644
index 5c4928ca00..0000000000
--- a/Utilities/IpFunc/MeanC.c
+++ /dev/null
@@ -1,202 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the mean of all greyvalues which are included
- * by a circle
- *
- * @param pic_old pointer to riginal image
- * @param center coordiantest of the center of the circle
- * @param radius radius of the circle
- *
- * qreturn mean of all greyvalues included by the circle
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncMeanC ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *center,
- mitkIpUInt4_t radius );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncMeanC\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of macros */
-
-
-#define MEAN( type, pic, beg, end, size, center, radius ) \
-{ \
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* used to calculate offset of image pixels */ \
- mitkIpUInt4_t dist[_mitkIpPicNDIM]; /* used to calculate offset of image pixels */ \
- \
- for ( ind[7] = beg[7] ; ind[7] < end[7]; ind[7]++ ) \
- { \
- dist[7] = ( ind[7] - center[7] ) * ( ind[7] - center[7] ); \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = beg[6] ; ind[6] < end[6]; ind[6]++ ) \
- { \
- dist[6] = ( ind[6] - center[6] ) * ( ind[6] - center[6] ) + dist[7]; \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = beg[5] ; ind[5] < end[5]; ind[5]++ ) \
- { \
- dist[5] = ( ind[5] - center[5] ) * ( ind[5] - center[5] ) + dist[6]; \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = beg[4] ; ind[4] < end[4]; ind[4]++ ) \
- { \
- dist[4] = ( ind[4] - center[4] ) * ( ind[4] - center[4] ) + dist[5]; \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = beg[3] ; ind[3] < end[3]; ind[3]++ ) \
- { \
- dist[3] = ( ind[3] - center[3] ) * ( ind[3] - center[3] ) + dist[4]; \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = beg[2] ; ind[2] < end[2]; ind[2]++ ) \
- { \
- dist[2] = ( ind[2] - center[2] ) * ( ind[2] - center[2] ) + dist[3]; \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = beg[1] ; ind[1] < end[1]; ind[1]++ ) \
- { \
- dist[1] = ( ind[1] - center[1] ) * ( ind[1] - center[1] ) +dist[2];\
- off[1] = size[1] * ind[1] + off[2]; \
- off[0] = off[1]+beg[0]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- dist[0] = ( ind[0] - center[0] ) * ( ind[0] - center[0] )+dist[1];\
- if ( ( mitkIpUInt4_t ) sqrt ( ( mitkIpFloat8_t ) dist[0] ) <= radius ) \
- { \
- mean = mean + (( type * )pic->data )[off[0]]; \
- count++; \
- } \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-
-
-/* ------------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------------ */
-
-mitkIpFloat8_t mitkIpFuncMeanC ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *center,
- mitkIpUInt4_t radius )
-{
- mitkIpInt4_t help;
- mitkIpUInt4_t i; /* loop index */
- mitkIpFloat8_t mean;
- mitkIpUInt4_t count;
- mitkIpUInt4_t end[_mitkIpPicNDIM]; /* end of window */
- mitkIpUInt4_t centr[_mitkIpPicNDIM]; /* end of window */
- mitkIpUInt4_t begin[_mitkIpPicNDIM]; /* beginning of window */
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( radius <= 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- for ( i = 0; i < pic_old->dim; i++ )
- {
- help = (mitkIpInt4_t *) center[i] - (mitkIpInt4_t *) radius;
- if ( help < 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- else begin[i] = help;
-
- help = center[i] + radius;
- if ( (mitkIpUInt4_t) help > pic_old->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- else end[i] = help + 1;
- centr[i] = center[i];
- }
-
- /* initialize vectors and variables */
-
- size[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
- size[pic_old->dim] = 0;
-
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- {
- centr[i] = 0;
- begin[i] = 0;
- end[i] = 1;
- }
-
- /* allocate image structure */
-
- mean = 0;
- count = 0;
-
- mitkIpPicFORALL_5 ( MEAN, pic_old, begin, end, size, centr, radius );
-
- mean = mean / count;
-
- return ( mean );
-}
-
-#endif
diff --git a/Utilities/IpFunc/MeanF.c b/Utilities/IpFunc/MeanF.c
deleted file mode 100644
index cfd8e0497e..0000000000
--- a/Utilities/IpFunc/MeanF.c
+++ /dev/null
@@ -1,153 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs a smoothing by a mean-value filter
- */
-
-/** @brief performs a smoothing by a mean-value filter
- *
- * @param pic_old pointer to original image
- * @param len_mask number of pixels for each dimension
- * @param dim_mask number of dimensions of filter in mask
- * @param border handling of the edge
- * @arg @c mitkIpFuncBorderOld : original greyvalues
- * @arg @c mitkIpFuncBorderZero : edge pixels are set to zero
- *
- * @return pointer to the smoothed image
- *
- * @par Uses @arg mitkIpFuncConv() convolve image with mask
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncMeanF ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t len_mask,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-
-/* --------------------------------------------------------------------- */
-/*
-*/
-/* --------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncMeanF ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t len_mask,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to new image structure */
- mitkIpPicDescriptor *pic_mask; /* pointer to mask */
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t no_elem;
- mitkIpFloat8_t help;
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( pic_old->dim < dim_mask || dim_mask < 1 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( len_mask % 2 != 1 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialize mask */
-
- pic_mask = mitkIpPicNew();
-
- if ( pic_mask == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- pic_mask->type = mitkIpPicFloat;
- pic_mask->bpe = 64;
- pic_mask->dim = dim_mask;
-
- for ( i = 0; i < dim_mask; i++ ) pic_mask->n[i] = len_mask;
-
- pic_mask->data = malloc ( _mitkIpPicSize ( pic_mask ) );
- if ( pic_mask->data == NULL )
- {
- mitkIpPicFree ( pic_mask->data );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- no_elem = _mitkIpPicElements ( pic_mask );
- help = 1. / ( mitkIpFloat8_t ) no_elem;
- for ( i = 0; i < no_elem; i++ )
- (( mitkIpFloat8_t * ) pic_mask->data ) [i] = help;
-
- /* convolve image with filtering mask */
-
- pic_new = mitkIpFuncConv ( pic_old, pic_mask, border );
-
- mitkIpPicFree ( pic_mask );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-
-#endif
diff --git a/Utilities/IpFunc/MeanR.c b/Utilities/IpFunc/MeanR.c
deleted file mode 100644
index ef8710927f..0000000000
--- a/Utilities/IpFunc/MeanR.c
+++ /dev/null
@@ -1,87 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * calculates the mean value of all greyvalues included by a rectangle
- */
-
-/** @brief calculates the mean value of all greyvalues included by a rectangle
- *
- * The rectangle is described by a vector with the coordinates of the
- * upper left corner and a vector of its length in each direction
- *
- * @param pic_old pointer to original image
- * @param begin vector with the beginning coordinates of the window
- * @param length vector with the length of the window in each direction
- *
- * @return mean value in window
- *
- * AUTHOR & DATE
- */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncMeanR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)ipFUncMeanR\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-mitkIpFloat8_t mitkIpFuncMeanR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length )
-{
- mitkIpFloat8_t mean; /* mean value */
- mitkIpPicDescriptor *pic_help;
-
- pic_help = mitkIpFuncWindow ( pic_old, begin, length );
-
- mean = mitkIpFuncMean ( pic_help );
-
- mitkIpPicFree ( pic_help );
-
- return ( mean );
-}
-#endif
-
diff --git a/Utilities/IpFunc/MeanROI.c b/Utilities/IpFunc/MeanROI.c
deleted file mode 100644
index 0c99645e95..0000000000
--- a/Utilities/IpFunc/MeanROI.c
+++ /dev/null
@@ -1,246 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the mean of all pixels inside of a polygon
- */
-
-/** @brief calculates the mean of all pixels inside of a polygon
- *
- * The polygon is described by a sequence of points
- *
- * @param pic_old pointer to original image
- * @param pol_x vector with the x-coordinates of the points which form
- * form the roi
- * @param pol_y vector with the y-coordinates of the points which form
- * form the roi
- * @param no_pts number of points used to describe ROI
- *
- * REMARKS
- * this function could just be used for 2D images
- *
- * @return mean of all greyvalues in ROI
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncMeanROI ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts ) ;
-#ifndef DOXYGEN_IGNORE
-
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncMeanROI\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/*definition of macros */
-
-#define MAX( x, y ) ( x > y ) ? x : y
-#define MIN( x, y ) ( x < y ) ? x : y
-#define ROI( type, pic, pic_help, sum, count ) \
-{ \
- mitkIpBool_t in; \
- mitkIpUInt4_t i, j; \
- mitkIpUInt4_t offset; \
- \
- for ( i = min_y; i <= max_y; i++ ) \
- { \
- in = mitkIpFalse; \
- offset = i * pic->n[0] + min_x; \
- for ( j = min_x; j <= max_x; j++ ) \
- { \
- if ( (( mitkIpUInt1_t * )pic_help->data )[offset] && ( !in ) ) \
- in = mitkIpTrue; \
- else if ( (( mitkIpUInt1_t * )pic_help->data )[offset] && ( in ) ) \
- { \
- in = mitkIpFalse; \
- sum = sum + (( type * )pic->data )[offset]; \
- count++; \
- } \
- \
- if ( in ) \
- { \
- sum = sum + (( type * )pic->data )[offset]; \
- count++; \
- } \
- \
- offset++; \
- } \
- } \
-}
-
-/*
-** mitkIpFuncMeanROI
-*/
-
-mitkIpFloat8_t mitkIpFuncMeanROI ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts )
-{
- mitkIpFloat8_t mean; /* mean of greyvalues in ROI */
- mitkIpFloat8_t sum=0; /* sum of greyvalues in ROI */
- mitkIpFloat8_t *a, *b; /* Gerade y = ax+b */
- mitkIpPicDescriptor *pic_help; /* contains edge of ROI */
- mitkIpUInt4_t min_x, max_x; /* min, max x-coordinate of ROI */
- mitkIpUInt4_t min_y, max_y; /* min, max y-coordinate of ROI */
- mitkIpUInt4_t i; /* loop variable */
- mitkIpUInt4_t count=0; /* number of pixels in ROI */
- mitkIpFloat8_t diff; /* difference between two points */
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( pic_old->dim > 2 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* calculate min. and max. coordiantes of ROI */
-
- min_x = pol_x[0];
- min_y = pol_y[0];
- max_x = pol_x[0];
- max_y = pol_y[0];
- for ( i = 1; i < no_pts; i++ )
- {
- min_x = MIN ( min_x, pol_x[i] );
- min_y = MIN ( min_y, pol_y[i] );
- max_x = MAX ( max_x, pol_x[i] );
- max_y = MAX ( max_y, pol_y[i] );
- }
-
-
- /* check whether ROI is in image */
-
- /* Expression is always false.
- if ( min_x < 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- */
-
- if ( max_x > pic_old->n[0] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* Expression is always false.
- if ( min_y < 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- */
-
- if ( max_y > pic_old->n[1] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate memory for a and b */
-
- a = ( mitkIpFloat8_t * ) malloc ( no_pts * sizeof ( mitkIpFloat8_t ) );
- b = ( mitkIpFloat8_t * ) malloc ( no_pts * sizeof ( mitkIpFloat8_t ) );
-
- /* Geraden zwischen zwei benachbarten Punkten berechnen */
-
- for ( i = 0; i < no_pts-1; i++ )
- {
- diff = ( mitkIpFloat8_t ) pol_x[i+1] - ( mitkIpFloat8_t ) pol_x[i];
- if ( diff )
- {
- a[i] = ( ( mitkIpFloat8_t ) pol_y[i+1] - ( mitkIpFloat8_t ) pol_y[i] ) / diff;
- b[i] = ( ( mitkIpFloat8_t ) pol_y[i] - a[i] * ( mitkIpFloat8_t )pol_x[i] );
- }
- else
- {
- b[i] = 0.;
- a[i] = 0.;
- }
- }
- diff = ( mitkIpFloat8_t ) pol_x[no_pts-1] - ( mitkIpFloat8_t ) pol_x[0];
- if ( diff )
- {
- a[no_pts-1] = ( ( mitkIpFloat8_t ) pol_y[no_pts-1] - ( mitkIpFloat8_t ) pol_y[0] ) / diff;
- b[no_pts-1] = ( pol_y[no_pts-1] - a[no_pts-1] * pol_x[no_pts-1] );
- }
- else
- {
- b[no_pts-1] = 0.;
- a[no_pts-1] = 0.;
- }
-
- /* draw polygon to image */
-
- pic_help = _mitkIpFuncDrawPoly ( pic_old, pol_x, pol_y, no_pts, a, b );
- if ( ! pic_help )
- {
- free ( a );
- free ( b );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to calculate mean */
-
- mitkIpPicFORALL_3 ( ROI, pic_old, pic_help, sum, count );
-
- mean = sum / count;
-
- free ( a );
- free ( b );
- mitkIpPicFree ( pic_help );
-
- return ( mean );
-
-}
-#endif
diff --git a/Utilities/IpFunc/Median.c b/Utilities/IpFunc/Median.c
deleted file mode 100644
index 58cc6f49e7..0000000000
--- a/Utilities/IpFunc/Median.c
+++ /dev/null
@@ -1,132 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the median of the image data
-*/
-
-/** @brief calculates the median of the image data
- *
- * @param pic_old pointer to the image
- *
- * @return median of the image data
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncMedI ( mitkIpPicDescriptor *pic_old );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncMedI\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-** function mitkIpFuncMedI:
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpFloat8_t mitkIpFuncMedI ( mitkIpPicDescriptor *pic_old )
-{
-
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpUInt4_t *hist; /* greylevel histogram */
- mitkIpUInt4_t size_hist; /* no. of elements in histogram */
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t sum; /* sum of histogram elements */
- mitkIpUInt4_t limit; /* */
- mitkIpFloat4_t factor;
- mitkIpFloat8_t median; /* median of image data */
-
- /* check whether image data are ok */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max. and min. possible greyvalues */
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) == mitkIpFuncERROR )
- {
- return ( mitkIpFuncERROR );
- }
-
- /* calculate greylevel histogram */
-
- mitkIpFuncHist ( pic_old, min_gv, max_gv, &hist, &size_hist );
- if ( hist == 0 )
- {
- return ( mitkIpFuncERROR );
- }
-
- /* factor to calculate the greyvalue belonging to an histogram index */
-
- if ( pic_old->type == mitkIpPicFloat )
- factor = 0.001;
- else if ( pic_old->type == mitkIpPicInt || pic_old->type == mitkIpPicUInt )
- factor = 1.;
- else
- {
- free ( hist );
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* find median */
-
- limit = _mitkIpPicElements ( pic_old ) / 2;
- for ( i = 0, sum = 0; sum < limit; i++ )
- sum = sum + hist [i];
-
- median = i * factor - fabs ( min_gv );
-
- free ( hist );
-
- return ( median );
-}
-#endif
-
diff --git a/Utilities/IpFunc/Morph.c b/Utilities/IpFunc/Morph.c
deleted file mode 100644
index 6bd8df9b58..0000000000
--- a/Utilities/IpFunc/Morph.c
+++ /dev/null
@@ -1,388 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs a morphological operation
- */
-
-/** @brief performs a morphological operation.
- *
- * Depending on the parameter kind a erosion or dilation is performed. If the original
- * image is an binary image each pixel is connected with the surrounding
- * pixels which are non zero in the kernel by using logical operations
- * ( and for erosion, or for dilation ). Greylevel images are transformed
- * by taking the minimum (erosion) of the surrounding pixels or the
- * maximum (dilation).
- *
- * @param pic_old pointer to the original image
- * @param mask pointer to the kernel
- * @param kind tells whether erosion or dilation is performed
- * 0 (mitkIpERO) : erosion
- * 1 (mitkIpDILA) : dilation
- * @param border tells how the edge is transformed
- * @arg @c mitkIpFuncBorderOld : original greyvalues
- * @arg @c mitkIpFuncBorderZero : edge is set to zero
- *
- * @return pointer to the transformed image
- *
- * @par Uses
- * @arg _mitkIpFuncError() - check the image data
- * @arg mitkIpFuncHist() - calculate the greylevel histogram
- * @arg _mitkIpFuncCompressM() - compress filtering mask
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *_mitkIpFuncMorph ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *mask,
- _mitkIpFuncFlagF_t kind,
- mitkIpFuncFlagI_t border );
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncMorph\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-/* definition of macros and constants */
-
-#define ERO_B &&
-#define DILA_B ||
-#define ERO_G <
-#define DILA_G >
-
-#define INIT( type, pic_new ) \
-{ \
- mitkIpUInt4_t i; /* loop variable */ \
- mitkIpUInt4_t no_elem; \
- \
- no_elem = _mitkIpPicElements ( pic_new ); \
- for ( i = 0; i < no_elem; i++ ) \
- (( type * )pic_new->data )[i] = 1; \
-}
-
-
-#define MORPH_B( type, pic_old, pic_new, m, beg, end, OP ) \
-{ \
- mitkIpUInt4_t i; /* loop index */ \
- mitkIpUInt4_t offset; /* offset */ \
- mitkIpInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* offset vector */ \
- \
- /* transformation of image */ \
- \
- for ( i = 0; i < m->length; i++ ) \
- { \
- offset = m->off_vekt[i]; \
- for ( ind[7] = beg[7]; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = ind[7] * size[7]; \
- for ( ind[6] = beg[6]; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = ind[6] * size[6] + off[7]; \
- for ( ind[5] = beg[5]; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = ind[5] * size[5] + off[6]; \
- for ( ind[4] = beg[4]; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = ind[4] * size[4] + off[5]; \
- for ( ind[3] = beg[3]; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = ind[3] * size[3] + off[4]; \
- for ( ind[2] = beg[2]; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = ind[2] * size[2] + off[3]; \
- for ( ind[1] = beg[1]; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = ind[1] * size[1] + off[2]; \
- off[0] = beg[0] + off[1]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- (( type * )pic_new->data )[off[0]] = \
- (( type * )pic_new->data)[off[0]] OP \
- (( type * )pic_old->data)[off[0] + offset]; \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-
-#define MORPH_G( type, pic_old, pic_new, m, beg, end, OP ) \
-{ \
- mitkIpUInt4_t i; /* loop index */ \
- mitkIpInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* offset vector */ \
- type help, help2; \
- \
- \
- /* transformation of image */ \
- \
- for ( ind[7] = beg[7]; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = ind[7] * size[7]; \
- for ( ind[6] = beg[6]; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = ind[6] * size[6] + off[7]; \
- for ( ind[5] = beg[5]; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = ind[5] * size[5] + off[6]; \
- for ( ind[4] = beg[4]; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = ind[4] * size[4] + off[5]; \
- for ( ind[3] = beg[3]; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = ind[3] * size[3] + off[4]; \
- for ( ind[2] = beg[2]; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = ind[2] * size[2] + off[3]; \
- for ( ind[1] = beg[1]; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = ind[1] * size[1] + off[2]; \
- off[0] = beg[0] + off[1]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- help = (( type* )pic_old->data)[off[0]]; \
- for ( i = 0; i < m->length; i++ ) \
- { \
- help2 = (( type * )pic_old->data)[m->off_vekt[i]+off[0]];\
- help = ( help OP help2 ) ? help : help2; \
- } \
- (( type * )pic_new->data)[off[0]] = help; \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- \
-}
-
-/* ---------------------------------------------------------------------- */
-/*
-** function _mitkIpFuncMorph
-*/
-/* ---------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *_mitkIpFuncMorph ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *mask,
- _mitkIpFuncFlagF_t kind,
- mitkIpFuncFlagI_t border )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
- mitkIpFuncMasc_t *m; /* compressed mask and belonging offsets*/
- mitkIpInt4_t beg[_mitkIpPicNDIM];
- mitkIpInt4_t end[_mitkIpPicNDIM];
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */
- mitkIpUInt4_t no_gv; /* number of different greyvalues */
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t size_hist; /* number of elements in histogram */
- mitkIpUInt4_t *hist; /* pointer to greyvalue histogram */
- mitkIpFloat8_t min, max; /* extreme greyvalues in image */
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( mask ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( mask->dim > pic_old->dim )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- for ( i = 0; i < mask->dim; i++ )
- if ( mask->n[i] > pic_old->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- pic_new = NULL;
-
- /* initialisation of vectors */
-
- size [0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
- size[pic_old->dim] = 0;
-
- /* compress filtering mask */
-
- m = _mitkIpFuncCompressM ( mask, pic_old, mitkIpFuncNoReflect, beg, end );
- if ( m == NULL )
- {
- free ( hist );
- mitkIpPicFree ( pic_new );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate and initialize pic_new */
-
- if ( border == mitkIpFuncBorderOld )
- pic_new = mitkIpPicClone ( pic_old );
- else if ( border == mitkIpFuncBorderZero )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- pic_new->data = calloc ( _mitkIpPicElements ( pic_new ), pic_new->bpe / 8 );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( kind == mitkIpFuncEroF )
- {
- mitkIpPicFORALL ( INIT, pic_new );
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* check whether binary or greylevel image */
-
- if ( mitkIpFuncExtr ( pic_old, &min, &max ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- mitkIpFuncHist ( pic_old, min, max, &hist, &size_hist );
- if ( hist == NULL )
- {
- mitkIpPicFree ( pic_new );
- return ( mitkIpFuncERROR );
- }
-
- i = 0;
- no_gv = 0;
- while ( i <= ( mitkIpUInt4_t ) ( fabs ( min ) + max ) && no_gv < 3 )
- {
- if ( hist [i] != 0 ) no_gv++;
- i++;
- }
-
-
- /* transform image (depending on kind and no_gv) */
-
- if ( kind == mitkIpFuncEroF ) /* erosion */
- {
- if ( no_gv == 2 ) /* binary image */
- {
- mitkIpPicFORALL_5 ( MORPH_B, pic_old, pic_new, m, beg, end, ERO_B );
- }
- else if ( no_gv > 2 ) /* greylevel image */
- {
- mitkIpPicFORALL_5 ( MORPH_G, pic_old, pic_new, m, beg, end, ERO_G );
- }
- else
- {
- free ( hist );
- free ( m->off_vekt );
- free ( m->mask_vekt );
- free ( m );
- /*_mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );*/
- return ( pic_new );
- }
- }
- else if ( kind == mitkIpFuncDilaF ) /* dilation */
- {
- if ( no_gv == 2 ) /* binary image */
- {
- mitkIpPicFORALL_5 ( MORPH_B, pic_old, pic_new, m, beg, end, DILA_B );
- }
- else if ( no_gv > 2 ) /* greylevel image */
- {
- mitkIpPicFORALL_5 ( MORPH_G, pic_old, pic_new, m, beg, end, DILA_G );
- }
- else
- {
- free ( hist );
- free ( m->off_vekt );
- free ( m->mask_vekt );
- free ( m );
- /*_mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );*/
- return ( pic_new );
- }
- }
- else
- {
- mitkIpPicFree ( pic_new );
- free ( hist );
- free ( m->off_vekt );
- free ( m->mask_vekt );
- free ( m );
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* free memory */
- free ( m->off_vekt );
- free ( m->mask_vekt );
- free ( m );
- free ( hist );
-
- return ( pic_new );
-}
-#endif
diff --git a/Utilities/IpFunc/MultC.c b/Utilities/IpFunc/MultC.c
deleted file mode 100644
index cfffd817fe..0000000000
--- a/Utilities/IpFunc/MultC.c
+++ /dev/null
@@ -1,264 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function multiplies two images
- */
-
-/** @brief multiplies two images
- *
- * @param pic_1 pointer to the first image
- * @param value constant which is multiplied to image
- * @param keep tells whether the image type could be changed when
- * necessary
- * @arg @c mitkIpFuncNoKeep : image data type could be changed
- * @arg @c mitkIpFuncKeep : image data type of original pictures is
- * kept (if there will be an over-/underflow
- * the max. or min. possible greyvalue is taken)
- * @param pic_return memory which could be used for pic_new. If
- * pic_retrun == NULL new memory is allocated
- *
- * @retrun pointer to the new image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncMultC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncMultI\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-/* definition of macros */
-
-#define MULTC( type_1, pic_1, pic_new, value ) \
-{ \
- mitkIpPicFORALL_3 ( MULTC2, pic_new, pic_1, type_1, value ); \
-} \
-
-
-#define MULTC2( type_n, pic_new, pic_1, type_1, value ) \
-{ \
- mitkIpUInt4_t i; /* loop index */\
- mitkIpUInt4_t no_elem; \
- \
- \
- /* multiply greyvalues of both images */\
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type_n * ) pic_new->data ) [i] = ( type_n ) \
- ( ( mitkIpFloat8_t ) (( type_1 * ) pic_1->data ) [i] * \
- value ); \
- } \
-}
-
-#define MULTC3( type_n, pic_1, pic_new, value ) \
-{ \
- mitkIpUInt4_t i; /* loop index */\
- mitkIpFloat8_t help; /* greyvalue of actual pixel */\
- mitkIpUInt4_t no_elem; \
- \
- \
- /* multiply greyvalues of both images */\
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help = ( mitkIpFloat8_t ) (( type_n * ) pic_1->data ) [i] * value; \
- (( type_n * ) pic_new->data ) [i] = \
- ( max_gv > ( mitkIpFloat8_t ) help ) ? \
- (( min_gv < ( mitkIpFloat8_t ) help ) ? \
- ( (type_n) ( help ) ) : ( type_n ) min_gv ) : \
- ( type_n ) max_gv; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncMultC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpFloat8_t min1, max1; /* extreme greyvalues of 1. image */
- mitkIpFloat8_t smin, smax; /* product of extreme greyvalues */
-
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* check value */
-
- /* if ( value == 0. ) return ( mitkIpFuncERROR ); */
-
- /* calculate max. and min. possible greyvalues for data type of images*/
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* find out data type of new iamge */
-
- if ( keep == mitkIpFuncKeep )
- {
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
- }
- else if ( keep == mitkIpFuncNoKeep )
- {
- /* calculate max. and min. greyvalues of both images */
-
- if ( mitkIpFuncExtr ( pic_old, &min1, &max1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- smax = max1 * value;
- smin = min1 * value;
-
- /* change image type of images of type mitkIpPicInt */
-
- if ( pic_old->type == mitkIpPicInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_old->type == mitkIpPicUInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->type = mitkIpPicInt;
- pic_new->bpe = 16;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- if ( smax > max_gv || smin < min_gv )
- {
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_old->type == mitkIpPicFloat )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( keep == mitkIpFuncNoKeep )
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
-
- /* macro to invert the picture (for all data types) */
-
-
- if ( keep == mitkIpFuncNoKeep )
- mitkIpPicFORALL_2 ( MULTC, pic_old, pic_new, value )
- else if ( keep == mitkIpFuncKeep )
- mitkIpPicFORALL_2 ( MULTC3, pic_old, pic_new, value )
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/MultI.c b/Utilities/IpFunc/MultI.c
deleted file mode 100644
index f939d2b243..0000000000
--- a/Utilities/IpFunc/MultI.c
+++ /dev/null
@@ -1,279 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function multiplies two images
- */
-
-/** this function multiplies two images
- *
- * @param pic_1 pointer to the first image
- * @param pic_2 pointer to the second image
- * @param keep tells whether the image type could be changed when
- * necessary
- * @arg @c mitkIpFuncNoKeep : image data type could be changed
- * @arg @c mitkIpFuncKeep : image data type of original pictures is
- * kept (if there will be an over-/underflow
- * the max. or min. possible greyvalue is taken)
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the new image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncMultI ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macros */
-
-#define MULTI( type_1, pic_1, pic_2, pic_new ) \
-{ \
- mitkIpPicFORALL_3 ( MULTI2, pic_new, pic_1, pic_2, type_1 ); \
-} \
-
-
-#define MULTI2( type_n, pic_new, pic_1, pic_2, type_1 ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type_n * ) pic_new->data ) [i] = \
- (( type_1 * ) pic_1->data ) [i] * \
- (( type_1 * ) pic_2->data ) [i]; \
- } \
-}
-
-#define MULTI3( type_n, pic_1, pic_2, pic_new ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- type_n help; \
- type_n help2; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help = (( type_n * ) pic_1->data ) [i]; \
- help2 = (( type_n * ) pic_2->data ) [i]; \
- (( type_n * ) pic_new->data ) [i] = \
- ( max_gv > ( mitkIpFloat8_t ) help * ( mitkIpFloat8_t ) help2 ) ? \
- (( min_gv < ( mitkIpFloat8_t ) help * ( mitkIpFloat8_t ) help2 ) ? \
- ( (type_n)help * (type_n)help2 ) : ( type_n ) min_gv ) :\
- ( type_n ) max_gv; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncMultI ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpUInt4_t i; /* loop index */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpFloat8_t min1, max1; /* extreme greyvalues of 1. image */
- mitkIpFloat8_t min2, max2; /* extreme greyvalues of 2. image */
- mitkIpFloat8_t smin, smax; /* product of extreme greyvalues */
- mitkIpFloat8_t min_max12; /* product of min1 and max2 */
- mitkIpFloat8_t min_max21; /* product of min2 and max1 */
-
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( pic_2 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* check whether images have the same size */
-
- if ( ( pic_1->type != pic_2->type ) || ( pic_1->bpe != pic_2->bpe ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
- if ( pic_1->dim == pic_2->dim )
- for ( i = 0; i < _mitkIpPicNDIM; i++ )
- {
- if ( pic_1->n[i] != pic_2->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
-
-
- /* calculate max. and min. possible greyvalues for data type of images*/
-
- if ( _mitkIpFuncExtT ( pic_1->type, pic_1->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* find out data type of new iamge */
-
- if ( keep == mitkIpFuncKeep )
- {
- pic_new = _mitkIpFuncMalloc ( pic_1, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
- }
- else if ( keep == mitkIpFuncNoKeep )
- {
- /* calculate max. and min. greyvalues of both images */
-
- if ( mitkIpFuncExtr ( pic_1, &min1, &max1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( mitkIpFuncExtr ( pic_2, &min2, &max2 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- smax = max1 * max2;
- smin = min1 * min2;
- min_max12 = min1 * max2;
- min_max21 = min2 * max1;
-
- /* change image type of images of type mitkIpPicInt */
-
- if ( pic_1->type == mitkIpPicInt )
- {
- if ( smax < max_gv && min_max12 < max_gv && min_max21 < max_gv &&
- smin > min_gv && min_max12 > min_gv && min_max21 > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_1->type == mitkIpPicUInt )
- {
- if ( smax < max_gv && min_max12 < max_gv && min_max21 < max_gv &&
- smin > min_gv && min_max12 > min_gv && min_max21 > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- pic_new->type = mitkIpPicInt;
- pic_new->bpe = 16;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- if ( smax > max_gv || min_max12 > max_gv || min_max21 > max_gv ||
- smin < min_gv || min_max12 < min_gv || min_max21 < min_gv )
- {
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
-
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_1->type == mitkIpPicFloat )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( keep == mitkIpFuncNoKeep )
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to invert the picture (for all data types) */
-
- if ( keep == mitkIpFuncNoKeep )
- mitkIpPicFORALL_2 ( MULTI, pic_1, pic_2, pic_new )
- else if ( keep == mitkIpFuncKeep )
- mitkIpPicFORALL_2 ( MULTI3, pic_1, pic_2, pic_new )
-
- mitkIpFuncCopyTags(pic_new, pic_1);
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/Norm.c b/Utilities/IpFunc/Norm.c
deleted file mode 100644
index e266e60fa5..0000000000
--- a/Utilities/IpFunc/Norm.c
+++ /dev/null
@@ -1,137 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function normalizes an image
- */
-
-/** @brief normalizes an image
- * @param pic_old pointer to the image that should be inverted
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the normalized image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncNorm ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-
-/* definition of macro for normalisation */
-
-#define NORM( type, pic, min, max, min_gv, max_gv ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- mitkIpFloat8_t a, b; \
- \
- a = ( mitkIpFloat8_t ) ( max_gv - min_gv ) / ( max - min ); \
- b = ( mitkIpFloat8_t ) ( max_gv ) - a * max; \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type * ) pic_new->data ) [i] = \
- ( type ) ( a * (( type * ) pic->data ) [i] + b ); \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-** function picNorm: normalizes the greyvalues of the picture (pic_old)
-** and returns the normalized picture (pic_new)
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncNorm ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* inverted picture */
- mitkIpFloat8_t max, min; /* extreme greyvalues in the image */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
-
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate extreme grevalues of the image */
-
- if ( mitkIpFuncExtr ( pic_old, &min, &max ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max. or min possible greyvalue for datatype */
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* test whether normalisation is necessary */
-
- if ( ( max_gv == max ) && ( min_gv == min ) )
- return ( pic_old );
-
- /* create a new picture, copy the header, allocate memory */
-
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* macro to invert the picture (for all data types) */
-
- mitkIpPicFORALL_4( NORM, pic_old, min, max, min_gv, max_gv );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/NormXY.c b/Utilities/IpFunc/NormXY.c
deleted file mode 100644
index 929dfa9440..0000000000
--- a/Utilities/IpFunc/NormXY.c
+++ /dev/null
@@ -1,164 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function normalizes an image to a specified range
-*/
-
-/** @brief normalizes an image to a specified range
- *
- * @param pic_old pointer to the image to normalize
- * @param low lower border of range
- * @param up upper border of range
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the noRmalized image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncNormXY ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t low,
- mitkIpFloat8_t up,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macro for normalisation */
-
-#define NORM( type, pic, min, max, min_gv, max_gv ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- mitkIpFloat8_t a, b; \
- \
- a = ( mitkIpFloat8_t ) ( max_gv - min_gv ) / ( max - min ); \
- b = ( mitkIpFloat8_t ) ( max_gv ) - a * max; \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type * ) pic_new->data ) [i] = \
- ( type ) ( a * (( type * ) pic->data ) [i] + b ); \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-** function picNorm: normalizes the greyvalues of the picture (pic_old)
-** and returns the normalized picture (pic_new)
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncNormXY ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t low,
- mitkIpFloat8_t up,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* inverted picture */
- mitkIpFloat8_t max, min; /* extreme greyvalues in the image */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
-
-
- /* check whether data are ok */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate extreme grevalues of the image */
-
- if ( mitkIpFuncExtr ( pic_old, &min, &max ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max and min. possible greyvalues */
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* check data */
-
- if ( max == min )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( low >= up )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( low < min_gv || up > max_gv )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* test whether normalisation is necessary */
-
- if ( ( up == max ) && ( low == min ) )
- return ( pic_old );
-
- /* create a new picture, copy the header, allocate memory */
-
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* macro to invert the picture (for all data types) */
-
- mitkIpPicFORALL_4( NORM, pic_old, min, max, low, up );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/Not.c b/Utilities/IpFunc/Not.c
deleted file mode 100644
index b2b4d2e3a1..0000000000
--- a/Utilities/IpFunc/Not.c
+++ /dev/null
@@ -1,114 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs the logical not operation on an image
- */
-
-/** @brief performs the logical not operation on an image
- *
- * @param pic_old pointer to the image that should be inverted
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the inverted image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncNot ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of invert-macro */
-
-#define NOT( type, pic ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type * ) pic_new->data ) [i] = ! ( (( type * ) pic->data ) [i] ); \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncNot ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* inverted picture */
-
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* create a new picture, copy the header, allocate memory */
-
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* macro to invert the picture (for all data types) */
-
- mitkIpPicFORALL ( NOT, pic_old );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/OpCl.c b/Utilities/IpFunc/OpCl.c
deleted file mode 100644
index 9c742d9ea2..0000000000
--- a/Utilities/IpFunc/OpCl.c
+++ /dev/null
@@ -1,147 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this functions performs the morphological operations opening and
- * closing.
- */
-
-/** @briefs performs the morphological operations opening and
- * closing.
- *
- * Opening is an erosion followed by a dilation and a
- * closing is a dilation followed by an erosion.
- *
- * @param pic_old pointer to the original image
- * @param mask pointer to the kernel
- * @param kind tells whether opening or closing is performed
- * @arg @c 0 (mitkIpOPEN) : opening
- * @arg @c 1 (mitkIpCLOSE) : closing
- * @param border tells how the edge is transformed
- * @arg @c mitkIpFuncBorderOld : original greyvalues
- * @arg @c mitkIpFuncBorderZero : edge is set to zero
- *
- * @return pointer to the transformed image
- *
- * USES
- * function _mitkIpFuncError - checks the image data
- * function _mitkIpFuncMorph - performs morphological operations
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *_mitkIpFuncOpCl ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *mask,
- _mitkIpFuncFlagF_t kind,
- mitkIpFuncFlagI_t border );
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-
-/* ---------------------------------------------------------------------- */
-/*
-** function mitkIpFuncOpCl
-*/
-/* ---------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *_mitkIpFuncOpCl ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *mask,
- _mitkIpFuncFlagF_t kind,
- mitkIpFuncFlagI_t border )
-{
- mitkIpPicDescriptor *pic_new1; /* pointer to transformed image */
- mitkIpPicDescriptor *pic_new2; /* pointer to transformed image */
- mitkIpUInt4_t i; /* loop index */
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( mask ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( mask->dim > pic_old->dim )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
- for ( i = 0; i < mask->dim; i++ )
- if ( mask->n[i] > pic_old->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncSIZE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* check whether opening or closing operation should be performed */
-
- if ( kind == mitkIpFuncOpenF )
- {
- pic_new1 = _mitkIpFuncMorph ( pic_old, mask, mitkIpFuncEroF, border );
- if ( border == mitkIpFuncBorderZero )
- pic_new1 = mitkIpFuncBorder ( pic_new1, mask, pic_new1 );
- pic_new2 = _mitkIpFuncMorph ( pic_new1, mask, mitkIpFuncDilaF, border );
- if ( border == mitkIpFuncBorderZero )
- pic_new2 = mitkIpFuncBorder ( pic_new2, mask, pic_new2 );
- }
- else if ( kind == mitkIpFuncCloseF )
- {
- pic_new1 = _mitkIpFuncMorph ( pic_old, mask, mitkIpFuncDilaF, border );
- if ( border == mitkIpFuncBorderZero )
- pic_new1 = mitkIpFuncBorder ( pic_new1, mask, pic_new1 );
- pic_new2 = _mitkIpFuncMorph ( pic_new1, mask, mitkIpFuncEroF, border );
- if ( border == mitkIpFuncBorderZero )
- pic_new2 = mitkIpFuncBorder ( pic_new2, mask, pic_new2 );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
- mitkIpPicFree ( pic_new1 );
-
- return ( pic_new2 );
-}
-#endif
diff --git a/Utilities/IpFunc/Open.c b/Utilities/IpFunc/Open.c
deleted file mode 100644
index f0469bed67..0000000000
--- a/Utilities/IpFunc/Open.c
+++ /dev/null
@@ -1,91 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this functions performs the morphological opening operation
- */
-
-/** @briefs performs the morphological opening operation
- *
- * Opening is an erosion followed by a dilation
- * @param pic_old pointer to the original image
- * @param mask pointer to the kernel
- * @param border tells how the edge is transformed
- * @arg @c mitkIpFuncBorderOld : original greyvalues
- * @arg @c mitkIpFuncBorderZero : edge is set to zero
- *
- * @return pointer to transformed iamge
- *
- * AUTHOR & DATE
- */
-
-/* include /files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncOpen ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-mitkIpPicDescriptor *mitkIpFuncOpen ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border )
-{
- mitkIpPicDescriptor *pic_new;
-
- pic_new = _mitkIpFuncOpCl ( pic_old, pic_mask, mitkIpFuncOpenF, border );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-
-#endif
diff --git a/Utilities/IpFunc/Or.c b/Utilities/IpFunc/Or.c
deleted file mode 100644
index 9ae4277775..0000000000
--- a/Utilities/IpFunc/Or.c
+++ /dev/null
@@ -1,135 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function connects two images using the OR
- */
-
-/** @brief connects two images using the OR
- *
- * @param pic_1 pointer to the first image
- * @param pic_2 pointer to the second image
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the new image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncOr ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpPicDescriptor *pic_return ) ;
-#ifndef DOXYGEN_IGNORE
-
-/* definition of invert-macro */
-
-#define OR( type, pic_1, pic_2, pic_new ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type * ) pic_new->data ) [i] = \
- (( type * ) pic_1->data ) [i] || \
- (( type * ) pic_2->data ) [i]; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncOr ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpUInt4_t i; /* loop index */
-
- /* check whether images have the same size */
-
- if ( _mitkIpFuncError ( pic_1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( pic_2 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( ( pic_1->type != pic_2->type ) || ( pic_1->bpe != pic_2->bpe ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
- if ( pic_1->dim == pic_2->dim )
- for ( i = 0; i < _mitkIpPicNDIM; i++ )
- {
- if ( pic_1->n[i] != pic_2->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
-
- /* allocate new iumage */
-
- pic_new = _mitkIpFuncMalloc ( pic_1, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* macro to connect two images using AND */
-
- mitkIpPicFORALL_2 ( OR, pic_1, pic_2, pic_new );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_1);
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/Pot.c b/Utilities/IpFunc/Pot.c
deleted file mode 100644
index 43c2aa3345..0000000000
--- a/Utilities/IpFunc/Pot.c
+++ /dev/null
@@ -1,227 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * This function takes all greyvalues of the image to the power of the exponent.
- */
-
-/** @brief takes all greyvalues of the image to the power of the exponent.
- *
- * @param pic_1 pointer to the first image
- * @param exponent exponent
- * @param keep tells whether the image type could be changed when
- * necessary
- * @arg @c mitkIpFuncNoKeep : image data type could be changed
- * @arg @c mitkIpFuncKeep : image data type of original pictures is
- * kept (if there will be an over-/underflow
- * the max. or min. possible greyvalue is taken)
- * @param pic_return memory which could be used for pic_new. If
- * pic_retrun == NULL new memory is allocated
- *
- * @return pointer to the new image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncPot ( mitkIpPicDescriptor *pic_1,
- mitkIpFloat8_t exponent,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macros */
-
-#define POT1( type_1, pic_1, exponent, pic_new ) \
-{ \
- mitkIpPicFORALL_3 ( POT2, pic_new, pic_1, exponent, type_1 ); \
-} \
-
-
-#define POT2( type_n, pic_new, pic_1, exponent, type_1 ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- mitkIpFloat8_t help; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help = pow( ( mitkIpFloat8_t) (( type_1 * ) pic_1->data ) [i], \
- exponent ); \
- (( type_n * ) pic_new->data ) [i] = \
- ( max_gv > help ) ? \
- (( min_gv < help ) ? (type_n)help : ( type_n )min_gv ) : \
- ( type_n ) max_gv; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncPot ( mitkIpPicDescriptor *pic_1,
- mitkIpFloat8_t exponent,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpFloat8_t min1, max1; /* extreme greyvalues of 1. image */
- mitkIpFloat8_t smin, smax; /* product of extreme greyvalues */
-
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max. and min. greyvalues of both images */
-
- if ( mitkIpFuncExtr ( pic_1, &min1, &max1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max. and min. possible greyvalues for data type of images*/
-
- if ( _mitkIpFuncExtT ( pic_1->type, pic_1->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* find out data type of new iamge */
-
- if ( keep == mitkIpFuncKeep )
- {
- pic_new = _mitkIpFuncMalloc ( pic_1, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
- }
- else if ( keep == mitkIpFuncNoKeep )
- {
- smax = pow ( max1, exponent );
- smin = pow ( min1, exponent );
-
- /* change image type of images of type mitkIpPicInt */
-
- if ( pic_1->type == mitkIpPicInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_1->type == mitkIpPicUInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- pic_new->type = mitkIpPicInt;
- pic_new->bpe = 16;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- if ( smax > max_gv || smin < min_gv )
- {
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
-
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_1->type == mitkIpPicFloat )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( keep == mitkIpFuncNoKeep )
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to invert the picture (for all data types) */
-
- mitkIpPicFORALL_2 ( POT1, pic_1, exponent, pic_new )
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_1);
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/Range.c b/Utilities/IpFunc/Range.c
deleted file mode 100644
index a14b66ed90..0000000000
--- a/Utilities/IpFunc/Range.c
+++ /dev/null
@@ -1,107 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function checks whether the greyvalues of the image are in the
- * spezified range
- */
-
-/** @brief checks whether the greyvalues of the image are in the
- * spezified range
- *
- * @param pic_old pointer to original image
- * @param gv_low lower end of range
- * @param gv_up upper end of range
- *
- * @return mitkIpFuncOK when greyvalues are in specified range
- * @return mitkIpFuncERROR when greyvalues are not in specigfied range or an error
- * occured
- *
- * USES
- * function mitkIpFuncExtr : to calculate extreme greyvalues of the image
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpUInt4_t mitkIpFuncRange ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up );
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-/* ------------------------------------------------------------------------ */
-/*
-** function mitkIpFuncRange
-*/
-/* ------------------------------------------------------------------------ */
-
-mitkIpUInt4_t mitkIpFuncRange ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up )
-{
- mitkIpFloat8_t min, max; /* extreme greyvalues */
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( gv_low > gv_up )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* calculate max. and min. possible greyvalues */
-
- if ( mitkIpFuncExtr ( pic_old, &min, &max) == mitkIpFuncERROR ) return ( mitkIpFuncERROR );
-
- if ( min > gv_low || max < gv_up ) return ( mitkIpFuncOK );
- else return ( mitkIpFuncERROR );
-
-}
-#endif
-
diff --git a/Utilities/IpFunc/Rank.c b/Utilities/IpFunc/Rank.c
deleted file mode 100644
index 5ac4cb530a..0000000000
--- a/Utilities/IpFunc/Rank.c
+++ /dev/null
@@ -1,323 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs a filtering of the image. The new greyvalue of
- * the image is calculated by taking the greyvalue belonging to the
- * specified range after having sorted the greyvalues included by the mask
- */
-
-/** @brief performs a filtering of the image. The new greyvalue of
- * the image is calculated by taking the greyvalue belonging to the
- * specified range after having sorted the greyvalues included by the mask
- *
- * @param pic_old pointer to original image
- * @param rank rank (number of pixel which is taken after having sorted
- * the pixels under the mask)
- * rank = 0 : Median
- * @param mask_dim dimension of mask
- * @param mask_size number of pixel in each dimension of the mask
- * @param border tells how the edge is handled
- * @arg @c mitkIpFuncBorderOld : greyvalue of pic_old is kept
- * @arg @c mitkIpFuncBorderZero : greyvalue of edge pixels is set to zero
- *
- * @return pointer to transformed image
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncRank ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t rank,
- mitkIpUInt4_t mask_dim,
- mitkIpUInt4_t mask_size,
- mitkIpFuncFlagI_t border );
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-/* definition of macros */
-
-#define INDEX0( typ, pic ) ( mitkIpUInt4_t ) ( factor * (( typ * ) pic->data ) \
- [off_vekt[i] + off[0]] + help )
-#define INDEX2( typ, pic ) ( mitkIpUInt4_t ) ( factor * (( typ * ) pic->data ) \
- [off_vekt[i] + off[0]] + help )
-#define INDEX3( typ, pic ) ( mitkIpUInt4_t ) ( factor * (( typ * ) pic->data ) \
- [off[0] - off_vekt[i]] + help )
-#define RANK( typ, pic, begin, no_elem, size, rank ) \
-{ \
- mitkIpUInt4_t n[_mitkIpPicNDIM]; /* size of each dimension */ \
- mitkIpUInt4_t i; /* loop index */ \
- mitkIpUInt4_t *hist; /* greyvalue histogram */ \
- mitkIpUInt4_t sum; /* used to calculate rank */ \
- mitkIpUInt4_t end; /* number of elements that change */ \
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t beg; /* beginning of the loops */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* used to calculate offset of image pixels */ \
- mitkIpFloat8_t min_gv, max_gv; /* min./max. possible greyvalues */ \
- mitkIpFloat8_t help, factor; \
- mitkIpUInt4_t hist_size; \
- \
- /* initialize vectors */ \
- \
- beg = ( mitkIpUInt4_t ) begin; \
- for ( i = 0; i < _mitkIpPicNDIM; i++ ) off[i] = 0; \
- for ( i = 0; i < pic->dim; i++ ) n[i] = pic->n[i] - beg; \
- for ( i = pic->dim; i < _mitkIpPicNDIM; i++ ) \
- { \
- n[i] = 1 + beg; \
- size[i] = 0; \
- } \
- \
- /* calculate max. and min. possible greyvalues */ \
- \
- if ( mitkIpFuncExtr( pic, &min_gv, &max_gv ) == mitkIpFuncERROR ) \
- { \
- free ( off_vekt ); \
- mitkIpPicFree ( pic_new ); \
- return ( mitkIpFuncERROR ); \
- } \
- \
- /* allocate memory for histogram and calculate variables which are needed for */ \
- /* allocation */ \
- \
- end = no_elem / mask_size; \
- factor = ( pic->type == mitkIpPicFloat ) ? 1000. : 1.; \
- help = fabs ( min_gv ); \
- hist_size = ( mitkIpUInt4_t ) ( factor * ( fabs ( max_gv ) + help ) ); \
- help = help * factor; \
-/*hist = calloc ( hist_size+1, sizeof ( mitkIpUInt4_t ) ); \
- if ( hist == NULL ) \
- { \
- free ( off_vekt ); \
- mitkIpPicFree ( pic_new ); \
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR ); \
- return ( mitkIpFuncERROR ); \
- } \
- */ \
- /* transform pixels */ \
- \
- for ( ind[7] = beg ; ind[7] < n[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = beg ; ind[6] < n[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = beg ; ind[5] < n[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = beg ; ind[4] < n[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = beg ; ind[3] < n[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = beg ; ind[2] < n[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = beg ; ind[1] < n[1]; ind[1]++ ) \
- { \
- /* calculate histogram with pixels under mask */ \
- /* (complete histogram for new rows) */ \
- \
- off[1] = size[1] * ind[1] + off[2]; \
- off[0] = off[1] + beg; \
- /*memset ( hist, 0, hist_size );*/ \
- hist = calloc ( hist_size+1, sizeof ( mitkIpUInt4_t ) ); \
- for ( i = 0; i < no_elem; i++ ) hist[INDEX0 ( typ, pic )]++; \
- for ( i = 0, sum = 0; sum < rank; i++ ) sum = sum + hist[i]; \
- (( typ * ) pic_new->data )[off[0]] = ( typ ) \
- ( ( ( mitkIpFloat8_t ) i - help ) / factor ); \
- for ( ind[0] = beg+1; ind[0] < n[0]; ind[0]++ ) \
- { \
- /* change histogram for each column */ \
- \
- for ( i = 0; i < end; i++ ) hist[INDEX2 ( typ, pic )]--; \
- off[0]++; \
- for ( i = 0; i < end; i++ ) hist[INDEX3 ( typ, pic )]++; \
- for ( i = 0, sum = 0; sum < rank; i++ ) sum = sum + hist[i]; \
- (( typ * ) pic_new->data )[off[0]] = ( typ ) \
- ( ( ( mitkIpFloat8_t ) i - help -1.) / factor );\
- } \
- free ( hist );\
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-/*free ( hist ); */ \
-}
-
-
-/* ------------------------------------------------------------------------------ */
-/*
-** function mitkIpFuncRank
-*/
-/* ------------------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *mitkIpFuncRank ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t rank,
- mitkIpUInt4_t mask_dim,
- mitkIpUInt4_t mask_size,
- mitkIpFuncFlagI_t border )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
- mitkIpInt4_t i; /* loop index */
- mitkIpInt4_t offset; /* offset of image */
- mitkIpInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */
- mitkIpInt4_t *off_vekt; /* pointer to offset vector */
- mitkIpInt4_t begin; /* 0.5 * mask_size */
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */
- mitkIpInt4_t n[_mitkIpPicNDIM]; /* size of each dimension */
- mitkIpUInt4_t no_elem; /* number of elements in mask */
- mitkIpUInt4_t len; /* length of offset vector */
-
- /* calculate number of elements in mask */
-
- no_elem = mask_size;
- for ( i = 1; i < mask_dim; i++ )
- no_elem = no_elem * mask_size;
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( mask_dim < 1 || mask_dim > pic_old->dim )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( rank > no_elem )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( mask_size % 2 != 1 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncSIZE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialize vectors and variables */
-
- size[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
-
- len = 0;
- begin = mask_size / 2;
-
- for ( i = 0; i < mask_dim; i++ )
- n[i] = begin + 1;
- for ( i = mask_dim; i < _mitkIpPicNDIM; i++ )
- n[i] = 1 - begin;
-
- /* allocate image structure */
-
- if ( border == mitkIpFuncBorderOld )
- pic_new = mitkIpPicClone ( pic_old );
- else if ( border == mitkIpFuncBorderZero )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, 0 );
- pic_new->data = calloc ( _mitkIpPicElements ( pic_new ), pic_new->bpe/8 );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate offset vector */
-
- off_vekt = malloc ( no_elem * sizeof ( mitkIpUInt4_t ) );
- if ( off_vekt == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* calculate offset vector */
-
- for ( ind[0] = -begin; ind[0] < n[0]; ind[0]++ )
- for ( ind[7] = -begin; ind[7] < n[7]; ind[7]++ )
- for ( ind[6] = -begin; ind[6] < n[6]; ind[6]++ )
- for ( ind[5] = -begin; ind[5] < n[5]; ind[5]++ )
- for ( ind[4] = -begin; ind[4] < n[4]; ind[4]++ )
- for ( ind[3] = -begin; ind[3] < n[3]; ind[3]++ )
- for ( ind[2] = -begin; ind[2] < n[2]; ind[2]++ )
- for ( ind[1] = -begin; ind[1] < n[1]; ind[1]++ )
- {
- offset = 0;
- for ( i = 0; i < pic_old->dim; i++ )
- offset = offset + ind[i] * size[i];
- off_vekt[len] = offset;
- len++;
- }
- if ( rank == 0 ) rank = no_elem / 2 + 1;
- mitkIpPicFORALL_4 ( RANK, pic_old, begin, no_elem, size, rank );
-
- free ( off_vekt );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-#endif
diff --git a/Utilities/IpFunc/Refl.c b/Utilities/IpFunc/Refl.c
deleted file mode 100644
index 1fc3d89560..0000000000
--- a/Utilities/IpFunc/Refl.c
+++ /dev/null
@@ -1,202 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function reflects an image along one axis
- */
-
-/** @brief reflects an image along one axis
- *
- * @param pic_old pointer to the image that should be inverted
- * @param axis reflection axis: 1 => x-axis
- * 2 => y-axis
- * 3 => z-axis
- * 4 => t-axis
- *
- * @return pointer to the reflected image
- *
- * AUTHOR & DATE
- */
-/* include Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncRefl ( mitkIpPicDescriptor *pic_old, int axis );
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of reflect-macro */
-
-#define ForLoop( type, pic, pic_new, index, offset_orig, offset_func ) \
-{ \
- mitkIpUInt4_t i; \
- mitkIpUInt4_t offset_refl; \
- mitkIpInt4_t n[_mitkIpPicNDIM]; \
- \
- for ( i = 0; i < pic_old->dim; i++ ) \
- n[i] = pic_old->n[i]; \
- \
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ ) \
- n[i] = 1; \
- \
- offset_refl = 0; \
- for ( index[7] = 0; index[7] < n[7]; index[7]++ ) \
- \
- for ( index[6] = 0; index[6] < n[6]; index[6]++ ) \
- \
- for ( index[5] = 0; index[5] < n[5]; index[5]++ ) \
- \
- for ( index[4] = 0; index[4] < n[4]; index[4]++ ) \
- \
- for ( index[3] = 0; index[3] < n[3]; index[3]++ ) \
- \
- for ( index[2] = 0; index[2] < n[2]; index[2]++ ) \
- \
- for ( index[1] = 0; index[1] < n[1]; index[1]++ ) \
- \
- for ( index[0] = 0; index[0] < n[0]; index[0]++ ) \
- { \
- offset_func; \
- (( type * ) pic_new->data ) [offset_refl] = \
- (( type * ) pic->data ) [offset_orig]; \
- offset_refl++; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-** function picRefl : reflects a picture (pic_old) along one axis
-** (axis)
-** axis: 1 => x-axis
-** 2 => y-axis
-** 3 => z-axis
-** 4 => t-axis
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncRefl ( mitkIpPicDescriptor *pic_old, int axis )
-{
-
- mitkIpPicDescriptor *pic_new; /* inverted picture */
- mitkIpUInt4_t index_vect[_mitkIpPicNDIM]; /* loop index vector */
- mitkIpUInt4_t length_vect[_mitkIpPicNDIM];
- mitkIpUInt4_t axis_vect[_mitkIpPicNDIM];
- mitkIpInt4_t n[_mitkIpPicNDIM]; /* number of pixels in each */
- /* dimension */
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t offset_orig;
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( axis < 1 || axis > pic_old->dim )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialisation of vectors */
-
- for ( i = 0; i < pic_old->dim; i++ )
- n[i] = pic_old->n[i];
-
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- n[i] = 1;
-
-
- for ( i = 0; i < _mitkIpPicNDIM; i++ )
- {
- index_vect[i] = 0;
- axis_vect[i] = 0;
- }
-
- /* change index for x and y axis */
-
- if ( axis == 1 )
- axis = 2;
- else if ( axis == 2 )
- axis = 1;
- axis_vect[axis - 1] = n[axis - 1] - 1;
-
- length_vect[0] = 1;
- for ( i = 1; i < pic_old->dim; i++ )
- {
- length_vect[i] = n[i-1] * length_vect[i-1];
- }
-
- /* create a new picture, copy the header, allocate memory */
-
- pic_new = mitkIpPicCopyHeader ( pic_old, 0 );
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to reflect image (for all image data types) */
- mitkIpPicFORALL_4 ( ForLoop, pic_old, pic_new, index_vect, offset_orig,
- offset_orig = 0;
- for ( i = 0; i < pic_old->dim; i++ )
- {
- offset_orig = offset_orig + length_vect [i] *
- (( axis_vect [i] == 0 ) ?
- index_vect [i] :
- ( axis_vect [i] - index_vect[i] ));
- }
- )
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/RegGrow.c b/Utilities/IpFunc/RegGrow.c
deleted file mode 100644
index 7fb62631af..0000000000
--- a/Utilities/IpFunc/RegGrow.c
+++ /dev/null
@@ -1,593 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs a region growing by mean and standard deviation.
- */
-
-/** @brief performs a region growing by mean and standard deviation.
- *
- * The growing criteria is, that the new pixels greyvalue must be in the
- * standard deviation of the seed region.
- * After calculating the mean and standard deviation of the seed region, all
- * pixels of this region are investigated whether they belong to a region
- * or not. All accepted pixels are marked with a region_label. In the next
- * step the neigbours of all accepted pixels are investigated whether they
- * belong to the region or to the border or to none of them. At the end all
- * pixels which belong to the boder (which contains the first pixel of the
- * outside region) are marked.
- *
- * @param pic_old pointer to original image
- * @param dim_seed dimension of seed region
- * @param beg_seed array with start pixels of seed_region
- * @param end_seed array with end pixels of seed_region
- * @param border_label greyvalue for border pixels
- * @param region_label greyvalue for pixels in region
- * @param std_fact factor ( to multiply standard deviation with )
- * @param kind tells wether region or border should be shown
- * 0 : border of region is shown
- * 1 : region is shown
- *
- * @return pointer to new image
- *
- * USES
- * function _mitkIpFuncError - check image data
- *
- * AUTHOR & DATE
- * UPDATES
- *
- * $Log$
- * Revision 1.2 2000/05/24 15:29:43 tobiask
- * Changed the installation paths of the package.
- *
- * Revision 1.4 2000/05/04 12:52:10 ivo
- * inserted BSD style license
- *
- * Revision 1.3 2000/03/06 17:02:44 ivo
- * ipFunc now with doxygen documentation.
- *
- * Revision 1.2 2000/02/18 14:58:06 ivo
- * Tags are now copied into newly allocated images.
- * Bugs fixed in mitkIpFuncFrame, mitkIpFuncRegGrow, _mitkIpFuncBorderX and mitkIpFuncHitMiss.
- *
- * Revision 1.1.1.1 2000/02/18 15:22:50 ivo
- * in macro REGGROW line if(diff<std_win) changed to if ( diff <= std_win ),
- * because otherwise a standard deviation of zero will result in an emty
- * image.
- *
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncRegGrow ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_seed,
- mitkIpUInt4_t *beg_seed,
- mitkIpUInt4_t *end_seed,
- mitkIpUInt4_t border_label,
- mitkIpUInt4_t region_label,
- mitkIpFloat8_t std_fact,
- mitkIpUInt4_t kind ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-/* definition of macros */
-
-#define STAT( type, pic_old, pic_new, mean, std_win, size_seed, beg, end ) \
-{ \
- mitkIpInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpInt4_t off[_mitkIpPicNDIM]; /* used to calculate offset vector */ \
- mitkIpFloat8_t sum; /* sum of greyvalues in seed region */ \
- mitkIpFloat8_t saq; /* sum of deviation squares */ \
- mitkIpFloat8_t diff; /* used to calculate saq */ \
- mitkIpFloat8_t std_dev; /* standard deviation */ \
- \
- \
- /* calculate mean */ \
- \
- sum = 0.; \
- for ( ind[7] = beg[7]; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = beg[6]; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = beg[5]; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = beg[4]; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = beg[3]; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = beg[2]; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = beg[1]; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = size[1] * ind[1] + off[2]; \
- off[0] = off[1] + beg[0]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- sum = sum + \
- ( mitkIpFloat8_t ) (( type * ) pic_old->data) [off[0]]; \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- mean = sum / ( mitkIpFloat8_t ) size_seed; \
- \
- \
- /* standard deviation */ \
- \
- saq = 0.; \
- for ( ind[7] = beg[7]; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = beg[6]; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = beg[5]; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = beg[4]; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = beg[3]; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = beg[2]; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = beg[1]; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = size[1] * ind[1] + off[2]; \
- off[0] = off[1] + beg[0]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- diff = ( mitkIpFloat8_t ) (( type * ) pic_old->data )[off[0]] - \
- mean; \
- saq = saq + diff * diff; \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- std_dev = sqrt ( saq / ( mitkIpFloat8_t ) ( size_seed - 1 ) ); \
- std_win = std_dev * std_fact; \
- printf ( "mean: %lf std_win: %lf \n", mean, std_win);\
-}
-
-#define ACPT( type, pic_old, pic_new, acpt, acpt_len, region_label, std_win ) \
-{ \
- mitkIpInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* used to calculate offset */ \
- mitkIpFloat8_t diff; /* difference between pixel and mean */ \
- \
- /* find pixels in seed region which are accepted */ \
- \
- for ( ind[7] = beg[7]; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = beg[6]; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = beg[5]; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = beg[4]; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = beg[3]; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = beg[2]; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = beg[1]; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = size[1] * ind[1] + off[2]; \
- off[0] = off[1] + beg[0]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- diff = fabs ( ( mitkIpFloat8_t ) \
- (( type * )pic_old->data )[off[0]] - mean ); \
- \
- /* pixel accepted */ \
- \
- if ( diff <= std_win ) \
- { \
- acpt[acpt_len] = off[0]; \
- acpt_len++; \
- (( type * ) pic_new->data )[off[0]] = \
- ( type ) region_label; \
- } \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-
-#define REGGROW( type, pic_old, pic_new, acpt, acpt_len, \
- border, border_len, std_win ) \
-{ \
- mitkIpUInt4_t i, j; /* loop variables */ \
- mitkIpInt4_t k; /* loop variable */ \
- mitkIpInt4_t rest; /* */ \
- mitkIpInt4_t z2; /* */ \
- mitkIpInt4_t z[_mitkIpPicNDIM]; /* */ \
- mitkIpBool_t found; /* found flag */ \
- mitkIpBool_t out; /* offset out of image flag */ \
- mitkIpFloat8_t diff; /* difference between pixel and mean */ \
- mitkIpUInt4_t offset; /* offset of pixel in image */ \
- \
- while ( acpt_len > 0 ) \
- { \
- for ( i = 0; i < acpt_len; i++ ) \
- { \
- rest = ( mitkIpInt4_t ) acpt[i]; \
- for ( k = pic_old->dim-1; k >= 0; k-- ) \
- { \
- z[k] = rest / ( mitkIpInt4_t )size[k]; \
- rest = rest % ( mitkIpInt4_t )size[k]; \
- } \
- \
- for ( j = 0; j < no_neigh; j++ ) \
- { \
- rest = off_vekt[j]; \
- out = mitkIpFalse; \
- for ( k = pic_old->dim-1; k >= 0; k-- ) \
- { \
- z2 = rest / ( mitkIpInt4_t )size[k] + z[k]; \
- rest = rest % ( mitkIpInt4_t )size[k]; \
- if ( z2 >= ( mitkIpInt4_t ) pic_old->n[k] || z2 < 0 ) out = mitkIpTrue; \
- } \
- \
- offset = ( mitkIpUInt4_t )( ( mitkIpInt4_t ) acpt[i] + off_vekt[j] ); \
- if ( ( !out ) && \
- (( type * )pic_new->data )[offset] != ( type ) region_label ) \
- { \
- diff = fabs ( ( mitkIpFloat8_t ) \
- (( type * )pic_old->data )[offset] - mean ); \
- if ( diff <= std_win ) \
- { \
- (( type * )pic_new->data )[offset] = ( type ) region_label;\
- next[next_len] = offset; \
- next_len++; \
- } \
- else \
- { \
- found = mitkIpFalse; \
- k = 0; \
- while ( ( !found ) && k < border_len ) \
- { \
- if ( border[k] == offset ) found = mitkIpTrue; \
- k++; \
- } \
- if ( !found ) \
- { \
- border[border_len] = offset; \
- border_len++; \
- } \
- } \
- } \
- } \
- } \
- acpt_len = next_len; \
- next_len = 0; \
- help = acpt; \
- acpt = next; \
- next = help; \
- } \
- if ( kind == 0 ) \
- { \
- mitkIpPicFree ( pic_new ); \
- pic_new = mitkIpPicClone ( pic_old ); \
- for ( i = 0; i < border_len; i++ ) \
- (( type * )pic_new->data )[border[i]] = border_label; \
- } \
-}
-/* -------------------------------------------------------------------------- */
-/*
-** mitkIpFuncRegGrow
-*/
-/* -------------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncRegGrow ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_seed,
- mitkIpUInt4_t *beg_seed,
- mitkIpUInt4_t *end_seed,
- mitkIpUInt4_t border_label,
- mitkIpUInt4_t region_label,
- mitkIpFloat8_t std_fact,
- mitkIpUInt4_t kind )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpUInt4_t i; /* loop index */
- mitkIpInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */
- mitkIpInt4_t beg[_mitkIpPicNDIM]; /* beginning and end of seed region */
- mitkIpInt4_t end[_mitkIpPicNDIM]; /* for each dimension */
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */
- mitkIpInt4_t off[_mitkIpPicNDIM]; /* used to calculate offsets */
- mitkIpInt4_t offset_v; /* offset */
- mitkIpInt4_t *off_vekt; /* offsets of all neighbour pixels */
- mitkIpUInt4_t no_neigh; /* number of neighbour pixels */
-
- /* parameters of seed region */
-
- mitkIpFloat8_t mean; /* mean of greyvalues in seed region */
- /*mitkIpFloat8_t std_dev; */ /* standard deviation */
- mitkIpFloat8_t std_win; /* value for growing criteria */
- /*mitkIpFloat8_t sum; */ /* sum of greyvalues in seed region */
- /*mitkIpFloat8_t diff; */ /* difference between greyvalue, mean */
- /*mitkIpFloat8_t saq; */ /* sum of deviation squares */
- mitkIpUInt4_t size_seed; /* number of pixels in seed region */
-
- /* variables for region growing */
-
- mitkIpUInt4_t acpt_len; /* number of accepted pixels */
- mitkIpUInt4_t next_len; /* number of acc. pixels for next step */
- mitkIpUInt4_t border_len; /* number of border pixels */
- mitkIpUInt4_t *acpt; /* offsets of all accepted pixels */
- mitkIpUInt4_t *next; /* offsets of acc. pixels for next step*/
- mitkIpUInt4_t *help; /* */
- mitkIpUInt4_t *border; /* offsets of all border pixels */
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* check parameters */
-
- if ( dim_seed > pic_old->dim ) return ( mitkIpFuncERROR );
- for ( i = 0; i < dim_seed; i++ )
- {
- if ( end_seed[i] <= beg_seed[i] || end_seed[i] > pic_old->n[i] ||
- beg_seed[i] < 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
-
- /* allocate vectors */
-
- no_neigh = ( mitkIpUInt4_t ) pow ( 3., pic_old->dim );
-
- off_vekt = malloc ( no_neigh * sizeof ( mitkIpInt4_t ) );
- if ( off_vekt == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- acpt = malloc ( _mitkIpPicElements ( pic_old ) * sizeof ( mitkIpUInt4_t ) );
- if ( acpt == NULL )
- {
- free ( off_vekt );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- next = malloc ( _mitkIpPicElements ( pic_old ) * sizeof ( mitkIpUInt4_t ) );
- if ( next == NULL )
- {
- free ( off_vekt );
- free ( acpt );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /*
- help = malloc ( _mitkIpPicElements ( pic_old ) * sizeof ( mitkIpUInt4_t ) );
- if ( help == NULL )
- {
- free ( off_vekt );
- free ( acpt );
- free ( next );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- */
-
- border = malloc ( _mitkIpPicElements ( pic_old ) * sizeof ( mitkIpUInt4_t ) );
- if ( border == NULL )
- {
- free ( off_vekt );
- free ( acpt );
- free ( next );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate pic_new and initialize it to zero */
-
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- if ( pic_new == NULL )
- {
- free ( off_vekt );
- free ( acpt );
- free ( next );
- free ( border );
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- pic_new->data = calloc ( _mitkIpPicElements (pic_new), pic_new->bpe / 8 );
- if ( pic_new->data == NULL )
- {
- free ( off_vekt );
- free ( acpt );
- free ( next );
- free ( border );
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialize variables and vectors */
-
- size[0] = 1;
- for ( i = 1; i < pic_old->dim; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- size[i] = 0;
-
- for ( i = 0; i < _mitkIpPicNDIM; i++ )
- {
- beg[i] = ( i < pic_old->n[i] ) ? -1 : 0 ;
- end[i] = ( i < pic_old->n[i] ) ? 2 : 1 ;
- }
-
- acpt_len = 0;
- next_len = 0;
- border_len = 0;
-
- /* calculate offset vector */
-
- offset_v = 0;
- for ( ind[7] = beg[7]; ind[7] < end[7]; ind[7]++ )
- {
- off[7] = size[7] * ind[7];
- for ( ind[6] = beg[6]; ind[6] < end[6]; ind[6]++ )
- {
- off[6] = size[6] * ind[6] + off[7];
- for ( ind[5] = beg[5]; ind[5] < end[5]; ind[5]++ )
- {
- off[5] = size[5] * ind[5] + off[6];
- for ( ind[4] = beg[4]; ind[4] < end[4]; ind[4]++ )
- {
- off[4] = size[4] * ind[4] + off[5];
- for ( ind[3] = beg[3]; ind[3] < end[3]; ind[3]++ )
- {
- off[3] = size[3] * ind[3] + off[4];
- for ( ind[2] = beg[2]; ind[2] < end[2]; ind[2]++ )
- {
- off[2] = size[2] * ind[2] + off[3];
- for ( ind[1] = beg[1]; ind[1] < end[1]; ind[1]++ )
- {
- off[1] = size[1] * ind[1] + off[2];
- off[0] = off[1] + beg[0];
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ )
- {
- off_vekt[offset_v] = off[0];
- off[0]++;
- offset_v++;
- }
- }
- }
- }
- }
- }
- }
- }
-
- /* calculate parameters of seed region */
-
- size_seed = 1;
-
- for ( i = 0; i < dim_seed; i++ )
- {
- beg[i] = beg_seed[i];
- end[i] = end_seed[i];
- size_seed = size_seed * ( end[i] - beg[i] );
- }
-
- for ( i = dim_seed; i < _mitkIpPicNDIM; i++ )
- {
- beg[i] = 0;
- end[i] = 1;
- }
-
- mitkIpPicFORALL_6 ( STAT, pic_old, pic_new, mean, std_win, size_seed, beg, end );
-
- /* find accepted pixels in seed region */
-
- mitkIpPicFORALL_5 ( ACPT, pic_old, pic_new, acpt, acpt_len, region_label, std_win );
-
- /* region growing */
-
- mitkIpPicFORALL_6 ( REGGROW, pic_old, pic_new, acpt, acpt_len,
- border, border_len, std_win );
-
- /* free memory */
-
- free ( off_vekt );
- free ( acpt );
- free ( next );
- /* free ( help );*/
- free ( border );
-
- /* Copy Tags */
-
- strncpy( pic_new->info->version, pic_old->info->version, _mitkIpPicTAGLEN );
- pic_new->info->tags_head = _mitkIpPicCloneTags( pic_old->info->tags_head );
- pic_new->info->write_protect = pic_old->info->write_protect;
-
- return ( pic_new );
-
-}
-
-#endif
-
diff --git a/Utilities/IpFunc/Roberts.c b/Utilities/IpFunc/Roberts.c
deleted file mode 100644
index b952142c15..0000000000
--- a/Utilities/IpFunc/Roberts.c
+++ /dev/null
@@ -1,256 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs an edge detection by the Roberts gradient
- */
-
-/** @brief performs an edge detection by the Roberts gradient
- *
- * This gradient uses a 2x2 or 2x2x2 mask and calculates the maximum
- * of the difference of all diagonal elements
- *
- * @param pic_old pointer to original image
- * @param dim_mask dimension of mask (2 or 3)
- * @param border tells how the edge is handled
- * @arg @c mitkIpFuncBorderOld : keep greyvalues
- * @arg @c mitkIpFuncBorderZero : set greyvalues to zero
- *
- * @return pointer to transformed image
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncRoberts ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of macros */
-
-#define ROBERTS( type, pic, msize, n, off, size ) \
-{ \
- mitkIpUInt4_t i; /* loop index */ \
- mitkIpUInt4_t end; /* */ \
- mitkIpUInt4_t off_imag; /* offset of pixels */ \
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- type help, help2; /* used to calculate new greyvalue */ \
- \
- end = msize / 2; \
- msize = msize - 1; \
- for ( ind[7] = 0; ind[7] < n[7]; ind[7]++ ) \
- for ( ind[6] = 0; ind[6] < n[6]; ind[6]++ ) \
- for ( ind[5] = 0; ind[5] < n[5]; ind[5]++ ) \
- for ( ind[4] = 0; ind[4] < n[4]; ind[4]++ ) \
- for ( ind[3] = 0; ind[3] < n[3]; ind[3]++ ) \
- for ( ind[2] = 0; ind[2] < n[2]; ind[2]++ ) \
- for ( ind[1] = 0; ind[1] < n[1]; ind[1]++ ) \
- for ( ind[0] = 0; ind[0] < n[0]; ind[0]++ ) \
- { \
- /* offset of actual pixel */ \
- \
- off_imag = 0; \
- for ( i = 0; i < pic->dim; i++ ) \
- off_imag = off_imag + ind[i] * size[i]; \
- \
- /* find out maximum of all diagonal differences */ \
- \
- help = 0; \
- for ( i = 0; i < end; i++ ) \
- { \
- help2 = ( type ) fabs ( ( mitkIpFloat8_t ) ( \
- ((type *)pic->data)[off_imag+off[i]] - \
- ((type *)pic->data)[off_imag+off[msize-i]])); \
- help = ( help > help2 ) ? help : help2; \
- } \
- (( type * )pic_new->data )[off_imag] = help; \
- } \
- \
-} \
-
-/* --------------------------------------------------------------------- */
-/*
-** function mitkIpFuncRoberts
-*/
-/* --------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncRoberts ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to new image structure */
- mitkIpInt4_t *off_vekt; /* offsets for the image pixels that*/
- /* are needed for the operation */
- mitkIpInt4_t offset; /* used to calculate off_vekt */
- mitkIpUInt4_t off_mask; /* offset of mask elements */
- mitkIpUInt4_t mask_size; /* number of elements in mask */
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */
- mitkIpUInt4_t n[_mitkIpPicNDIM]; /* size of each dimension */
- mitkIpUInt4_t i; /* loop index */
-
- /* check data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( ( pic_old->dim < dim_mask ) || ( dim_mask < 1 ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialisation of vectors */
-
- for ( i = 0; i < dim_mask; i++ )
- n[i] = 2;
-
- for ( i = dim_mask; i < _mitkIpPicNDIM; i++ )
- n[i] = 1;
-
- size[0] = 1;
- ind[0] = 0;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- {
- ind[i] = 0;
- size[i] = size[i-1] * pic_old->n[i-1];
- }
-
- /* calculate offset vector */
-
- mask_size = ( mitkIpUInt4_t ) pow ( 2., ( mitkIpFloat8_t ) dim_mask );
- off_vekt = calloc ( mask_size, sizeof( mitkIpInt4_t ) );
- off_mask = 0;
- if ( off_vekt == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- switch ( dim_mask )
- {
- case 8:
- for ( ind[7] = 0; ind[7] < n[7]; ind[7]++ )
- case 7:
- for ( ind[6] = 0; ind[6] < n[6]; ind[6]++ )
- case 6:
- for ( ind[5] = 0; ind[5] < n[5]; ind[5]++ )
- case 5:
- for ( ind[4] = 0; ind[4] < n[4]; ind[4]++ )
- case 4:
- for ( ind[3] = 0; ind[3] < n[3]; ind[3]++ )
- case 3:
- for ( ind[2] = 0; ind[2] < n[2]; ind[2]++ )
- case 2:
- for ( ind[1] = 0; ind[1] < n[1]; ind[1]++ )
- case 1:
- for ( ind[0] = 0; ind[0] < n[0]; ind[0]++ )
- {
- offset = 0;
- for ( i = 0; i < dim_mask; i++ )
- offset = offset + ind[i] * size[i];
- off_vekt[off_mask] = offset;
- off_mask++;
- }
- }
-
- /* allocate new image */
-
- if ( border == mitkIpFuncBorderOld )
- pic_new = mitkIpPicClone ( pic_old );
- else if ( border == mitkIpFuncBorderZero )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, 0 );
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- }
- else
- {
- free ( off_vekt );
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- free ( off_vekt );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new->data == NULL )
- {
- free ( off_vekt );
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro */
-
- for ( i = 0; i < pic_old->dim; i++ )
- n[i] = pic_old->n[i] - 1;
-
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- n[i] = 1;
-
- mitkIpPicFORALL_4 ( ROBERTS, pic_old, mask_size, n, off_vekt, size );
-
- free ( off_vekt );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-
-#endif
-
diff --git a/Utilities/IpFunc/Rotate.c b/Utilities/IpFunc/Rotate.c
deleted file mode 100644
index 469947f9d1..0000000000
--- a/Utilities/IpFunc/Rotate.c
+++ /dev/null
@@ -1,298 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * Rotates image by a given angle
- */
-
-/** @brief Rotates image by a given angle.
- *
- * The angle has to be a multiple of 90 degrees.
- *
- * @param pic pointer to picture
- * @param pic_old pointer to picture old, which is not used in this version
- * @param grad angle array for every axes
- * @param order order of the axes
- * parameter example: grad: 90 270 90
- * order: 3 1 2
- * means: first step: the third axis is rotated with 90 degrees
- * second step: the first axis is rotated with 90 degrees
- * third step: the second axis is rotated with 270 degrees
- *
- * @return image
- *
- * @author Judith Dilo @date 5.5.1990
- * @author Ulrike Guennel @date 18.3.1994
- *
- *
- * This a total rewritten version of 'ipRot' written by Judith Dilo
- * 7.6.1990 by J.D. (small improvements)
- * 18.3.1994 by U.G. (new pic format)
- * $Log$
- * Revision 1.3 2003/08/21 08:20:06 tobiask
- * Removed warnings.
- *
- * Revision 1.2 2000/05/24 15:29:43 tobiask
- * Changed the installation paths of the package.
- *
- * Revision 1.4 2000/05/04 12:52:11 ivo
- * inserted BSD style license
- *
- * Revision 1.3 2000/03/06 17:02:45 ivo
- * ipFunc now with doxygen documentation.
- *
- * Revision 1.2 2000/02/18 14:58:06 ivo
- * Tags are now copied into newly allocated images.
- * Bugs fixed in mitkIpFuncFrame, mitkIpFuncRegGrow, _mitkIpFuncBorderX and mitkIpFuncHitMiss.
- *
- * Revision 1.1.1.1 1998/07/16 12:04:49 antje
- * initial import
- *
- * Revision 1.1 1995/03/07 16:42:15 uli
- * Initial revision
- */
-
-/*
-** ipFunc includefiles
-*/
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncRotate( mitkIpPicDescriptor *pic,
- mitkIpPicDescriptor *pic_old,
- int *grad, int *order );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncRotate\tGerman Cancer Research Center (DKFZ) $Revision$ "__DATE__ };
-#endif
-
-
-/*
-** private macros
-*/
-#define COEFF_DEF( x,i ) (( (x) > (0)) ? ((x) - *p_index[i]) : (*p_index[i]) )
-
-
-/*
-** the action starts here
-*/
-mitkIpPicDescriptor *mitkIpFuncRotate( mitkIpPicDescriptor *pic,
- mitkIpPicDescriptor *pic_old,
- int *grad, int *order )
-
-{
- mitkIpPicDescriptor *pic_return;
- mitkIpUInt4_t *p_index[_mitkIpPicNDIM];
- mitkIpUInt4_t index[_mitkIpPicNDIM];
- mitkIpUInt4_t coeff_sum[_mitkIpPicNDIM];
- mitkIpUInt1_t coefficient[_mitkIpPicNDIM];
- mitkIpUInt4_t r_size[_mitkIpPicNDIM];
- mitkIpUInt4_t r_offset,i;
- int order_alloc = 0;
-
- /*
- **
- */
- if( !pic ) return( NULL );
- if( pic->dim < 2 || pic->dim > _mitkIpPicNDIM ) return( NULL );
-
- /* take over image header structure and allocate memory */
- mitkIpPicFree( pic_old );
- pic_return = mitkIpPicCopyHeader( pic, NULL );
- if( !pic_return ) return( NULL );
- pic_return->data = malloc( _mitkIpPicSize(pic_return) );
- if( !pic_return->data )
- {
- mitkIpPicFree( pic_return );
- return( NULL );
- }
-
-
- /*
- ** init pic_return->n, pointer to index and calculated_coeff
- ** init coefficient matrix, r_size
- */
- for( i = 0; i< _mitkIpPicNDIM; i++ )
- {
- pic_return->n[i] = pic->n[i];
- p_index[i] = &index[i];
- coeff_sum[i] = 0;
- coefficient[i] = 0;
- r_size[i] = 0;
- }
-
- /*
- ** init the order array if NULL
- */
- if( !order )
- {
- order = (int *) malloc( pic->dim * sizeof( int ) );
- if( !order )
- {
- mitkIpPicFree( pic_return );
- return( NULL );
- }
- order_alloc = 1;
- for( i=0; i<_mitkIpPicNDIM; i++ )
- order[i] = i+1;
- }
- else
- {
- /*
- ** test if order correct
- */
- int tt[_mitkIpPicNDIM];
- for( i=0; i<_mitkIpPicNDIM; i++ ) tt[i] = 0;
- for( i=0; i< pic->dim; i++ )
- {
- if( order[i] > 0 && order[i]<= (mitkIpInt4_t) pic->dim )
- tt[ order[i]-1 ]++;
- else
- i = _mitkIpPicNDIM + 1;
- }
- if( i == pic->dim )
- {
- for( i=0; i< pic->dim; i++ )
- {
- if( tt[i] != 1 )
- i = _mitkIpPicNDIM + 1;
- }
- }
- if( i > _mitkIpPicNDIM )
- {
- mitkIpPicFree( pic_return );
- return( NULL );
- }
- }
-
- /*
- ** fill of the coefficient array and change the p_index array
- */
- for( i = 0; i<pic->dim; i++ )
- {
- int d1,d2;
- mitkIpUInt4_t *tmp;
-
- d1 = order [i]-1;
- d2 = (d1+1 >= (mitkIpInt4_t) pic->dim ) ? ( 0 ) : ( d1+1 );
-
- switch( grad[d1] )
- {
- case 0:
- break;
- case 90:
- tmp = p_index[d2];
- p_index[d2] = p_index[d1];
- p_index[d1] = tmp;
-
- coefficient[ p_index[d2] - index ] =
- (coefficient[ p_index[d2] - index ] == 1 ) ? 0 : 1;
- break;
- case 180:
- coefficient[ p_index[d1] - index ] =
- (coefficient[ p_index[d1] - index ] == 1 ) ? 0 : 1;
- coefficient[ p_index[d2] - index ] =
- (coefficient[ p_index[d2] - index ] == 1 ) ? 0 : 1;
- break;
- case 270:
- tmp = p_index[d2];
- p_index[d2] = p_index[d1];
- p_index[d1] = tmp;
-
- coefficient[ p_index[d1] - index ] =
- (coefficient[ p_index[d1] - index ] == 1 ) ? 0 : 1;
- break;
- default:
- {
- if( order_alloc == 1 )
- free( (void *) order );
- mitkIpPicFree( pic_return );
- return( NULL );
- break;
- }
- }
- }
-
-
- /*
- ** calculate coefficient, and pic_return->n[i]
- */
- for( i=0; i<pic->dim; i++ )
- {
- coeff_sum[ i ] = (pic->n[p_index[i] - index]-1)
- * coefficient[ p_index[i] - index];
- pic_return->n[i] = pic->n[p_index[i] - index];
- }
-
- /*
- ** calc multiplier for coefficients
- */
- r_size[0] = 1;
- for( i=1; i<pic->dim; i++ )
- {
- r_size[i] = r_size[i-1] * pic_return->n[i-1];
- }
-
-
- /*
- ** Makro for all for-loops and switches for all dimensions (1-8)
- ** FOR ALL: dimensions, indizes, data types
- */
- mitkIpPicFORALL_4( mitkIpFuncFORALL, pic, pic_return, index, r_offset,
- for( r_offset = COEFF_DEF( coeff_sum[0],0) , i=1; i<pic->dim; i++ )
- r_offset += COEFF_DEF( coeff_sum[i],i ) * r_size[i];
- )
-
- /*
- ** free allocated memory
- */
- if( order_alloc == 1 )
- free( (void *) order );
-
- /* Copy Tags */
-
- strncpy( pic_return->info->version, pic->info->version, _mitkIpPicTAGLEN );
- pic_return->info->tags_head = _mitkIpPicCloneTags( pic->info->tags_head );
- pic_return->info->write_protect = pic->info->write_protect;
-
- return( pic_return );
-}
-#endif
diff --git a/Utilities/IpFunc/SDev.c b/Utilities/IpFunc/SDev.c
deleted file mode 100644
index 2ed9ce8d3f..0000000000
--- a/Utilities/IpFunc/SDev.c
+++ /dev/null
@@ -1,81 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the standard deviation of all greyvalues
- * in an image
- */
-
-/** this function calculates the standard deviation of all greyvalues
- * in an image
- *
- * @param pic pointer to the image
- *
- * @return standard deviation
- *
- * USES
- * function mitkIpFuncVar: to calculate the variance of an image
- *
- * AUTHOR
- */
-
-/* include-files */
-
-#include "mitkIpFuncP.h"
-
- mitkIpFloat8_t mitkIpFuncSDev ( mitkIpPicDescriptor *pic );
-
-#ifndef DOXYGEN_IGNORE
-
-mitkIpFloat8_t mitkIpFuncSDev ( mitkIpPicDescriptor *pic )
-{
-
- mitkIpFloat8_t s_der; /* standard deviation */
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- s_der = sqrt ( mitkIpFuncVar ( pic ) );
-
- return( s_der );
-}
-#endif
-
diff --git a/Utilities/IpFunc/SDevC.c b/Utilities/IpFunc/SDevC.c
deleted file mode 100644
index df9982879b..0000000000
--- a/Utilities/IpFunc/SDevC.c
+++ /dev/null
@@ -1,99 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the standrad deviation of all grey-
- * values included by a circle. This circle is described by
- * its center and radius
- */
-
-/** this function calculates the standrad deviation of all grey-
- * values included by a circle. This circle is described by
- * its center and radius
- *
- * @param pic_old pointer to image structure
- * @param center pointer to an array with the coordinates of
- * the center of the circle
- * @param radius radius of the circle
- *
- * @return standard deviation of all pixels included by a
- * circle
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncSDevC ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *center,
- mitkIpUInt4_t radius );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-
-/*
-** mitkIpFuncSDevC
-*/
-mitkIpFloat8_t mitkIpFuncSDevC ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *center,
- mitkIpUInt4_t radius )
-{
- mitkIpFloat8_t s_dev;
- mitkIpFloat8_t var;
-
- var = mitkIpFuncVarC ( pic_old, center, radius );
-
- if ( var < 0 ) return ( mitkIpFuncERROR );
-
- s_dev = sqrt ( var );
-
- return ( s_dev );
-}
-#endif
diff --git a/Utilities/IpFunc/SDevR.c b/Utilities/IpFunc/SDevR.c
deleted file mode 100644
index 9ec28db369..0000000000
--- a/Utilities/IpFunc/SDevR.c
+++ /dev/null
@@ -1,91 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the standard deviation of all greyvalues included by a rectangle
- */
-
-/** calculates the standard deviation of all greyvalues included by a rectangle
- *
- * The rectangle is described by a vector with the coordinates of the
- * upper left corner and a vector of its length in each direction
- *
- * @param pic_old pointer to original image
- * @param begin vector with the beginning coordinates of the window
- * @param length vector with the length of the window in each direction
- *
- * @return standard deviation in window
- *
- * AUTHOR & DATE
- */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncSDevR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-mitkIpFloat8_t mitkIpFuncSDevR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length )
-{
- mitkIpFloat8_t sder; /* standard deviation */
-
- mitkIpPicDescriptor *pic_help;
-
- pic_help = mitkIpFuncWindow ( pic_old, begin, length );
-
- sder = mitkIpFuncSDev ( pic_help );
-
- mitkIpPicFree ( pic_help );
-
- return ( sder );
-}
-
-#endif
-
diff --git a/Utilities/IpFunc/SDevROI.c b/Utilities/IpFunc/SDevROI.c
deleted file mode 100644
index fd9e337278..0000000000
--- a/Utilities/IpFunc/SDevROI.c
+++ /dev/null
@@ -1,105 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the standard deviation of all pixels
- * inside of a polygon
- */
-
-/** @brief calculates the standard deviation of all pixels
- * inside of a polygon
- *
- * The polygon is described by a sequence of points
- *
- * @param pic_old pointer to original image
- * @param pol_x vector with the x-coordinates of the points which form
- * form the roi
- * @param pol_y vector with the y-coordinates of the points which form
- * form the roi
- * @param no_pts number of points used to describe ROI
- *
- * REMARKS
- * this function could just be used for 2D images
- *
- * @return standard deviation of all greyvalues in ROI
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncSDevROI ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncSDevROI\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-
-/*
-** mitkIpFuncSDevROI
-*/
-
-mitkIpFloat8_t mitkIpFuncSDevROI ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts )
-{
- mitkIpFloat8_t var; /* variance of greyvalues in ROI */
- mitkIpFloat8_t s_dev; /* standard dev.of greyvalues in ROI*/
-
- var = mitkIpFuncVarROI ( pic_old, pol_x, pol_y, no_pts );
-
- s_dev = sqrt ( var );
-
- return ( s_dev );
-
-}
-
-#endif
-
diff --git a/Utilities/IpFunc/ScBl.c b/Utilities/IpFunc/ScBl.c
deleted file mode 100644
index 067270fae3..0000000000
--- a/Utilities/IpFunc/ScBl.c
+++ /dev/null
@@ -1,392 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
-* internal only. used by Scale.c
-*/
-
-/*@file
- * this function scales the first image to the size of the second image
- * using bilinear interpolation
- */
-
-/* @brief scales the first image to the size of the second image
- * using bilinear interpolation
- *
- * @param pic_old pointer to the image that should be scaled
- * @param pic_new pointer to the scaled image ( contains the information
- * for the scaling in th header )
- * !!! All Header Information necessary when calling function !!!
- *
- * @return pointer to the scaled image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *_mitkIpFuncScBL( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macros */
-
-#define SCBL4ALL( type, pic_old, pic_new, size, scale, n, shift, step, RND ) \
-{ \
- mitkIpFloat8_t factor[_mitkIpPicNDIM]; /* */\
- mitkIpFloat8_t help1[_mitkIpPicNDIM]; /* */\
- size_t help2[_mitkIpPicNDIM]; /* */\
- size_t offset[_mitkIpPicNDIM]; /* offset vector */\
- mitkIpFloat8_t weights[_mitkIpPicNDIM*2];/* */\
- size_t i; /* loop index */\
- size_t off_new; /* offset of scaled image */\
- size_t off_weights; /* offset of orig. image */\
- size_t ind_o[_mitkIpPicNDIM]; /* loop index (outer loops) */\
- size_t ind_i[_mitkIpPicNDIM]; /* loop index (inner loops) */\
- size_t n_i[_mitkIpPicNDIM]; /* loop index (inner loops) */\
- size_t pic_elements; /* number of elements of pic_old */ \
- type help; \
- /* initialize vectors */\
- \
- for ( i = 0; i < _mitkIpPicNDIM; i++ ) \
- { \
- ind_o[i] = 0; \
- ind_i[i] = 0; \
- factor[i] = 1.; \
- weights[i] = 1.; \
- weights[15-i] = 1.; \
- help2[i] = 0; \
- } \
- \
- for ( i = 0; i < pic_new->dim; i++ ) \
- n_i[i] = 2; \
- \
- for ( i = pic_new->dim; i < _mitkIpPicNDIM; i++ ) \
- n_i[i] = 1; \
- \
- pic_elements = _mitkIpPicElements(pic_old)*step; \
- off_new = 0; \
- switch ( pic_new->dim ) \
- { \
- default: printf ( " only 8 dimensions supported \n" ); \
- case 8: \
- for ( ind_o[7] = 0; ind_o[7] < n[7]; ind_o[7]++ ) \
- { \
- help1[7] = ( mitkIpFloat8_t ) ind_o[7] * scale[7]; \
- weights[7] = 1. - (help1 [7] - ( mitkIpFloat8_t ) \
- (( size_t ) help1[7] )); \
- weights[15] = 1. - weights[7]; \
- help2[7] = ( size_t ) help1[7] * size[7]; \
- case 7: \
- for ( ind_o[6] = 0; ind_o[6] < n[6]; ind_o[6]++ ) \
- { \
- help1[6] = ( mitkIpFloat8_t ) ind_o[6] * scale[6]; \
- weights[6] = 1. - (help1 [6] - ( mitkIpFloat8_t ) \
- (( size_t ) help1[6] )); \
- weights[14] = 1. - weights[6]; \
- help2[6] = ( size_t ) help1[6] * size[6]; \
- case 6: \
- for ( ind_o[5] = 0; ind_o[5] < n[5]; ind_o[5]++ ) \
- { \
- help1[5] = ( mitkIpFloat8_t ) ind_o[5] * scale[5]; \
- weights[5] = 1. - (help1 [5] - ( mitkIpFloat8_t ) \
- (( size_t ) help1[5] )); \
- weights[13] = 1. - weights[5]; \
- help2[5] = ( size_t ) help1[5] * size[5]; \
- case 5: \
- for ( ind_o[4] = 0; ind_o[4] < n[4]; ind_o[4]++ ) \
- { \
- help1[4] = ( mitkIpFloat8_t ) ind_o[4] * scale[4]; \
- weights[4] = 1. - (help1 [4] - ( mitkIpFloat8_t ) \
- (( size_t ) help1[4] )); \
- weights[12] = 1. - weights[4]; \
- help2[4] = ( size_t ) help1[4] * size[4]; \
- case 4: \
- for ( ind_o[3] = 0; ind_o[3] < n[3]; ind_o[3]++ ) \
- { \
- help1[3] = ( mitkIpFloat8_t ) ind_o[3] * scale[3]; \
- weights[3] = 1. - (help1 [3] - ( mitkIpFloat8_t ) \
- (( size_t ) help1[3] )); \
- weights[11] = 1. - weights[3]; \
- help2[3] = ( size_t ) help1[3] * size[3]; \
- case 3: \
- for ( ind_o[2] = 0; ind_o[2] < n[2]; ind_o[2]++ ) \
- { \
- help1[2] = ( mitkIpFloat8_t ) ind_o[2] * scale[2]; \
- weights[2] = 1. - (help1 [2] - ( mitkIpFloat8_t ) \
- (( size_t ) help1[2] )); \
- weights[10] = 1. - weights[2]; \
- help2[2] = ( size_t ) help1[2] * size[2]; \
- case 2: \
- for ( ind_o[1] = 0; ind_o[1] < n[1]; ind_o[1]++ ) \
- { \
- help1[1] = ( mitkIpFloat8_t ) ind_o[1] * scale[1]; \
- weights[1] = 1. - (help1 [1] - ( mitkIpFloat8_t ) \
- (( size_t ) help1[1] )); \
- weights[9] = 1. - weights[1]; \
- help2[1] = ( size_t ) help1[1] * size[1]; \
- case 1: \
- for ( ind_o[0] = 0; ind_o[0] < n[0]; ind_o[0]++ ) \
- { \
- help1[0] = ( mitkIpFloat8_t ) ind_o[0] * scale[0]; \
- weights[0] = 1. - (help1 [0] - ( mitkIpFloat8_t ) \
- (( size_t ) help1[0] )); \
- weights[8] = 1. - weights[0]; \
- help2[0] = ( size_t ) help1[0] * size[0]; \
- \
- help = ( type ) 0; \
- \
- for ( ind_i[7] = 0; ind_i[7] < n_i[7]; ind_i[7]++)\
- { \
- factor[7] = weights[ind_i[7]*_mitkIpPicNDIM+7]; \
- offset[7] = ( size_t )help2[7] + \
- ind_i[7] * size[7]; \
- \
- for ( ind_i[6] = 0; ind_i[6] < n_i[6]; \
- ind_i[6]++ ) \
- { \
- factor[6] = weights[ind_i[6]*_mitkIpPicNDIM+6] * \
- factor[7]; \
- offset[6] = ( size_t )help2[6] + \
- ind_i[6] * size[6] + offset[7]; \
- \
- for ( ind_i[5] = 0; ind_i[5] < n_i[5]; \
- ind_i[5]++ ) \
- { \
- factor[5] = weights[ind_i[5]*_mitkIpPicNDIM+5] *\
- factor[6]; \
- offset[5] = ( size_t )help2[5] + \
- ind_i[5] * size[5] + offset[6]; \
- \
- for ( ind_i[4] = 0; ind_i[4] < n_i[4]; \
- ind_i[4]++ ) \
- { \
- factor[4] = weights[ind_i[4]*_mitkIpPicNDIM+4]*\
- factor[5]; \
- offset[4] = ( size_t )help2[4] + \
- ind_i[4] * size[4] + offset[5];\
- \
- for ( ind_i[3] = 0; ind_i[3] < n_i[3]; \
- ind_i[3]++ ) \
- { \
- factor[3] = weights[ind_i[3]*_mitkIpPicNDIM+3]*\
- factor[4]; \
- offset[3] = ( size_t )help2[3] + \
- ind_i[3] * size[3] + offset[4];\
- \
- for ( ind_i[2] = 0; ind_i[2] < n_i[2]; \
- ind_i[2]++ ) \
- { \
- factor[2] = weights[ind_i[2]*_mitkIpPicNDIM + 2]*\
- factor[3]; \
- offset[2] = ( size_t )help2[2] + \
- ind_i[2] * size[2] + \
- offset[3]; \
- \
- for ( ind_i[1] = 0; ind_i[1] < n_i[1];\
- ind_i[1]++ ) \
- { \
- factor[1] = weights[ind_i[1]*_mitkIpPicNDIM+1] *\
- factor[2]; \
- offset[1] = ( size_t )help2[1] + \
- ind_i[1] * size[1] + \
- offset[2]; \
- \
- for ( ind_i[0] = 0; ind_i[0] < n_i[0];\
- ind_i[0]++ ) \
- { \
- offset[0] = ( size_t )(help2[0]+\
- ind_i[0] * size[0] + \
- offset[1])*(( size_t )step)+shift;\
- if(pic_elements<=offset[0]) continue; \
- factor[0] = weights[ind_i[0]*_mitkIpPicNDIM] * \
- factor[1]; \
- help = help + factor[0] * \
- ((( type * ) pic_old->data )\
- [offset[0]]+RND); \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- off_new = 0; \
- for ( i = 0; i < pic_old->dim; i++ ) \
- off_new = off_new + ind_o[i] * sizeo[i]; \
- off_new = off_new*step+shift; \
- (( type * ) pic_new->data )[off_new] = help; \
- off_weights = 0; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-#define SCBL( type, pic_old, pic_new, size, scale, n ) \
- SCBL4ALL( type, pic_old, pic_new, size, scale, n, 0, 1, 0 )
-#define SCBLCOLOR( type, pic_old, pic_new, size, scale, n ) \
- SCBL4ALL( type, pic_old, pic_new, size, scale, n, 0, 3, 0 ) \
- SCBL4ALL( type, pic_old, pic_new, size, scale, n, 1, 3, 0 ) \
- SCBL4ALL( type, pic_old, pic_new, size, scale, n, 2, 3, 0 )
-
-#define SCBL_INT( type, pic_old, pic_new, size, scale, n ) \
- SCBL4ALL( type, pic_old, pic_new, size, scale, n, 0, 1, 0.5 )
-#define SCBLCOLOR_INT( type, pic_old, pic_new, size, scale, n ) \
- SCBL4ALL( type, pic_old, pic_new, size, scale, n, 0, 3, 0.5 ) \
- SCBL4ALL( type, pic_old, pic_new, size, scale, n, 1, 3, 0.5 ) \
- SCBL4ALL( type, pic_old, pic_new, size, scale, n, 2, 3, 0.5 )
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *_mitkIpFuncScBL( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new )
-{
-
- mitkIpUInt4_t i; /* loopindex */
- mitkIpUInt4_t n[_mitkIpPicNDIM]; /* no. of pixels in each dimension*/
- mitkIpFloat8_t scale[_mitkIpPicNDIM]; /* scaling factors */
- mitkIpUInt4_t size[_mitkIpPicNDIM];
- mitkIpUInt4_t sizeo[_mitkIpPicNDIM];
- char is_color=0;
-
-
- /* check whether data are correct */
-
- if(pic_old->bpe==24)
- {
- is_color=1;
- pic_old->bpe=pic_new->bpe=8;
- }
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( pic_new ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( pic_old->dim != pic_new->dim )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialisation of vectors */
-
- for ( i = 0; i < pic_new->dim; i++ )
-// if(pic_new->n[i]>=pic_old->n[i])
- n[i] = pic_new->n[i];//ivo - 2;
-// else
-// n[i] = pic_new->n[i]-1;
-
- for ( i = pic_new->dim; i < _mitkIpPicNDIM; i++ )
- n[i] = 0;
-
- sizeo[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- sizeo[i] = sizeo[i-1] * pic_new->n[i-1];
-
- size[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
-
- /* calculate scaling factors */
-
- for ( i = 0; i < pic_old->dim; i++ )
- scale[i] = ( mitkIpFloat8_t ) ( pic_old->n[i] - 1 ) /
- ( mitkIpFloat8_t ) ( pic_new->n[i] - 1 );
-
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- scale[i] = 1.;
-
- /* add header information for pic_new and allocate memory */
-
- pic_new->bpe = pic_old->bpe*(is_color!=0?3:1);
- pic_new->type = pic_old->type;
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to scale an image ( for all data types )s) */
-
- if(pic_old->type==mitkIpPicFloat)
- {
- if(is_color==0)
- {
- mitkIpPicFORALL_4 ( SCBL, pic_old, pic_new, size, scale, n );
- }
- else
- {
- mitkIpPicFORALL_4 ( SCBLCOLOR, pic_old, pic_new, size, scale, n );
- }
- }
- else
- {
- if(is_color==0)
- {
- mitkIpPicFORALL_4 ( SCBL_INT, pic_old, pic_new, size, scale, n );
- }
- else
- {
- mitkIpPicFORALL_4 ( SCBLCOLOR_INT, pic_old, pic_new, size, scale, n );
- }
- }
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/ScFact.c b/Utilities/IpFunc/ScFact.c
deleted file mode 100644
index ddc1d85501..0000000000
--- a/Utilities/IpFunc/ScFact.c
+++ /dev/null
@@ -1,115 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function scales an image with a factor for all directions
- */
-
-/** this function scales an image with a factor for all directions
- *
- * @param pic_old pointer to the image
- * @param sc_fact vector that contains the scaling factors
- * @param sc_kind parameter for the kind of interpolation
- * @arg @c mitkIpFuncScaleNN: next neighbour interpolation
- * qarg @c mitkIpFuncScaleBl: bilinear interpolation
- *
- * @return pointer to the scaled image
- *
- * AUTHOR & DATE
- */
-
-/* include-files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncScFact ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t factor,
- mitkIpFuncFlagI_t sc_kind ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-mitkIpPicDescriptor *mitkIpFuncScFact ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t factor,
- mitkIpFuncFlagI_t sc_kind )
-{
-
- mitkIpUInt4_t i; /* loop index */
- mitkIpPicDescriptor *pic_new; /* pointer to scaled image */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* allocate pic_new */
-
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* copy scaling information to header of pic_new */
-
- pic_new->dim = pic_old->dim;
- for ( i = 0; i < pic_old->dim; i++ )
- pic_new->n[i] = pic_old->n[i] * factor;
-
- /* call scaling routines */
-
- if ( sc_kind == mitkIpFuncScaleNN )
- pic_new = _mitkIpFuncScNN ( pic_old, pic_new );
- else if ( sc_kind == mitkIpFuncScaleBl )
- pic_new = _mitkIpFuncScBL ( pic_old, pic_new );
- else
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return( pic_new );
-}
-#endif
-
diff --git a/Utilities/IpFunc/ScNN.c b/Utilities/IpFunc/ScNN.c
deleted file mode 100644
index 243ddb4af3..0000000000
--- a/Utilities/IpFunc/ScNN.c
+++ /dev/null
@@ -1,222 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
-* internal only. used by Scale.c
-*/
-/*@file
- * this function scales the first image to the size of the second image
- * using next-neighbour interpolation
- */
-
-/* @brief scales the first image to the size of the second image
- * using next-neighbour interpolation
- *
- * @param pic_old pointer to the image that should be scaled
- * @param pic_new pointer to the scaled image ( contains the information
- * for the scaling in th header )
- * !!! Header must contain all information when calling !!!
- * !!! function !!!
- *
- * @return pointer to the scaled image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *_mitkIpFuncScNN( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macros */
-
-#define SCNN4ALL( type, pic_old, pic_new, size, weights, n, shift, step )\
-{ \
- size_t ind[_mitkIpPicNDIM]; /* loop index vector */\
- size_t offset[_mitkIpPicNDIM]; /* offset vector */\
- size_t i; /* loop index */\
- size_t off_new; /* offset of scaled image */\
- size_t off_orig; /* offset of orig. image */\
- \
- \
- /* calculate offsets for scaling an image */ \
- \
- off_new = 0; \
- for ( ind[7] = 0; ind[7] < n[7]; ind[7]++ ) \
- { \
- offset[7] = ( mitkIpUInt4_t ) ( ( mitkIpFloat8_t ) ind[7] * \
- weights[7] + 0.5 ) * size[7]; \
- for ( ind[6] = 0; ind[6] < n[6]; ind[6]++ ) \
- { \
- offset[6] = ( mitkIpUInt4_t ) ( ( mitkIpFloat8_t ) ind[6] * \
- weights[6] + 0.5 ) * size[6]; \
- for ( ind[5] = 0; ind[5] < n[5]; ind[5]++ ) \
- { \
- offset[5] = ( mitkIpUInt4_t ) ( ( mitkIpFloat8_t ) ind[5] * \
- weights[5] + 0.5 ) * size[5]; \
- for ( ind[4] = 0; ind[4] < n[4]; ind[4]++ ) \
- { \
- offset[4] = ( mitkIpUInt4_t ) ( ( mitkIpFloat8_t ) ind[4] * \
- weights[4] + 0.5 ) * size[4]; \
- for ( ind[3] = 0; ind[3] < n[3]; ind[3]++ ) \
- { \
- offset[3] = ( mitkIpUInt4_t ) ( ( mitkIpFloat8_t ) ind[3]*\
- weights[3] + 0.5 ) * size[3]; \
- for ( ind[2] = 0; ind[2] < n[2]; ind[2]++ ) \
- { \
- offset[2] = ( mitkIpUInt4_t ) \
- ( ( mitkIpFloat8_t ) ind[2] * \
- weights[2] + 0.5 ) * size[2]; \
- for ( ind[1] = 0; ind[1] < n[1]; ind[1]++ ) \
- { \
- offset[1] = ( mitkIpUInt4_t ) \
- ( ( mitkIpFloat8_t ) ind[1] * \
- weights[1]+0.5 ) * size[1]; \
- for ( ind[0] = 0; ind[0] < n[0]; ind[0]++)\
- { \
- offset[0] = ( mitkIpUInt4_t ) \
- ( ( mitkIpFloat8_t ) ind[0] * \
- weights[0] + 0.5)*size[0];\
- off_orig = 0; \
- for ( i = 0; i < pic_old->dim; i++ ) \
- off_orig = off_orig + offset[i]; \
- \
- (( type * )pic_new->data)[off_new+shift]=\
- (( type * )pic_old->data)[off_orig+shift];\
- \
- off_new+=step; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-
-#define SCNN( type, pic_old, pic_new, size, weights, n ) \
- SCNN4ALL( type, pic_old, pic_new, size, weights, n, 0, 1 )
-#define SCNNCOLOR( type, pic_old, pic_new, size, weights, n ) \
- SCNN4ALL( type, pic_old, pic_new, size, weights, n, 0, 3 ) \
- SCNN4ALL( type, pic_old, pic_new, size, weights, n, 1, 3 ) \
- SCNN4ALL( type, pic_old, pic_new, size, weights, n, 2, 3 )
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *_mitkIpFuncScNN( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new )
-{
-
- mitkIpUInt4_t i; /* loopindex */
- mitkIpUInt4_t n[_mitkIpPicNDIM]; /* no. of pixels in each dimension*/
- mitkIpFloat8_t weights[_mitkIpPicNDIM];
- mitkIpUInt4_t size[_mitkIpPicNDIM];
- char is_color=0;
-
-
- /* check whether data are correct */
-
- if(pic_old->bpe==24)
- {
- is_color=1;
- pic_old->bpe=pic_new->bpe=8;
- }
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( pic_new ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( pic_old->dim != pic_new->dim )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialisation of vectors */
-
- for ( i = 0; i < pic_new->dim; i++ )
- n[i] = pic_new->n[i];
-
- for ( i = pic_new->dim; i < _mitkIpPicNDIM; i++ )
- n[i] = 1;
-
- size[0] = 1*(is_color!=0?3:1);
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
-
- for ( i = 0; i < pic_old->dim; i++ )
- weights[i] = ( mitkIpFloat8_t ) ( pic_old->n[i] - 1 ) /
- ( mitkIpFloat8_t ) ( pic_new->n[i] - 1 );
-
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- weights[i] = 0.;
-
- /* add header information for pic_new and allocate memory */
-
- pic_new->bpe = pic_old->bpe*(is_color!=0?3:1);
- pic_new->type = pic_old->type;
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
-
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to scale an image */
- if(is_color==0)
- {
- mitkIpPicFORALL_4 ( SCNN, pic_old, pic_new, size, weights, n );
- }
- else
- {
- mitkIpPicFORALL_4 ( SCNNCOLOR, pic_old, pic_new, size, weights, n );
- pic_old->bpe=pic_new->bpe=24;
- }
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/Scale.c b/Utilities/IpFunc/Scale.c
deleted file mode 100644
index 396aff12a4..0000000000
--- a/Utilities/IpFunc/Scale.c
+++ /dev/null
@@ -1,133 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function scales an image
- */
-
-/** @brief this function scales an image
- *
- * @param pic_old pointer to the image
- * @param sc_fact vector that contains the scaling factors for each dimension
- * @param sc_kind parameter for the kind of interpolation
- * @arg @c mitkIpFuncScaleNN: next neighbour interpolation
- * @arg @c mitkIpFuncScaleBl: bilinear interpolation
- *
- * @return pointer to the scaled image
- *
- * AUTHOR AND DATE
- */
-
-/* include-files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncScale ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t sc_fact[_mitkIpPicNDIM],
- mitkIpFuncFlagI_t sc_kind ) ;
-#ifndef DOXYGEN_IGNORE
-
-mitkIpPicDescriptor *mitkIpFuncScale ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t sc_fact[_mitkIpPicNDIM],
- mitkIpFuncFlagI_t sc_kind )
-{
-
- mitkIpUInt4_t i; /* loop index */
- mitkIpPicDescriptor *pic_new; /* pointer to scaled image */
-
- char is_color=0;
-
-
- /* check whether data are correct */
-
- if(pic_old->bpe==24)
- {
- pic_old->bpe=8;
- is_color=1;
- }
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if(is_color)
- pic_old->bpe=24;
-
- /* allocate pic_new */
-
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* copy scaling information to header of pic_new */
-
- pic_new->dim = pic_old->dim;
- for ( i = 0; i < pic_old->dim; i++ )
- pic_new->n[i] =
- ( sc_fact[i] == 0 ) ?
- pic_old->n[i] :
- ( mitkIpUInt4_t ) ( sc_fact[i] * pic_old->n[i] );
-
- /* call scaling routines */
-
- if ( sc_kind == mitkIpFuncScaleNN )
- pic_new = _mitkIpFuncScNN ( pic_old, pic_new );
- else if ( sc_kind == mitkIpFuncScaleBl ) {
- pic_new = _mitkIpFuncScBL ( pic_old, pic_new );
- /*printf("using NN due to error in _mitkIpFuncScaleBL ... ");
- pic_new = _mitkIpFuncScNN ( pic_old, pic_new );*/
- }
- else
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return( pic_new );
-}
-#endif
diff --git a/Utilities/IpFunc/SelInv.c b/Utilities/IpFunc/SelInv.c
deleted file mode 100644
index 4635635678..0000000000
--- a/Utilities/IpFunc/SelInv.c
+++ /dev/null
@@ -1,159 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function sets the greyvalues of all pixels @e inside a given
- * range to a new greyvalue
- */
-
-/** @brief sets the greyvalues of all pixels @e inside a given
- * range to a new greyvalue
- *
- * The greyvalues of all pixels which are included
- * in [gv_low, gv_up] are set to a new greyvalue (gv).
- *
- * @param pic_old pointer to original image
- * @param gv_low lower greyvalue of range
- * @param gv_up upper greyvalue of range
- * @param gv new greyvalue
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to transformed image
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncSelInv ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up,
- mitkIpFloat8_t gv,
- mitkIpPicDescriptor *pic_return ) ;
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-/* definition of macros */
-
-#define SELECT( type, pic, gv_low, gv_up, gv ) \
-{ \
- mitkIpUInt4_t i; /* loopindex */\
- type help; /* element that should be transformed */\
- \
- /* transform greyvalues */\
- \
- for ( i = 0; i < _mitkIpPicElements ( pic ); i++ ) \
- { \
- help = (( type * )pic->data )[i]; \
- (( type * )pic_new->data )[i] = \
- ( help < ( type ) gv_low || help > ( type )gv_up ) ? \
- ( type ) help : gv; \
- } \
- \
-} \
-
-/* ------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *mitkIpFuncSelInv ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up,
- mitkIpFloat8_t gv,
- mitkIpPicDescriptor *pic_return )
-{
- mitkIpFloat8_t min_gv, max_gv; /* max and min posiible greyvalues */
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
-
-
- /* calculate max. and min. possible greyvalues */
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) == mitkIpFuncERROR )
- return ( mitkIpFuncERROR );
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( gv_low > gv_up )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( min_gv > gv_low || max_gv < gv_up )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( min_gv > gv || max_gv < gv )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate memory for the transformed image */
-
-
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* macro to transform the image */
-
- mitkIpPicFORALL_3 ( SELECT, pic_old, gv_low, gv_up, gv );
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-#endif
-
diff --git a/Utilities/IpFunc/SelMM.c b/Utilities/IpFunc/SelMM.c
deleted file mode 100644
index 0c5a994271..0000000000
--- a/Utilities/IpFunc/SelMM.c
+++ /dev/null
@@ -1,153 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function sets the greyvalues of all pixels outside a given
- * range to the an extremal greyvalue
- */
-
-/** @brief sets the greyvalues of all pixels outside a given
- * range to the an extremal greyvalue
-
- * Sets the greyvalue of pixels that are smaller than gv_low to this value and
- * those larger than gv_up to that value. Very similar to
- * and used by mitkIpFuncLevWin().
- *
- * @param pic_old pointer to original image
- * @param gv_low lower greyvalue of range
- * @param gv_up upper greyvalue of range
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to transformed image
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncSelMM ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up,
- mitkIpPicDescriptor *pic_return ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of macros */
-
-#define SELECT( type, pic, gv_low, gv_up, min_gv, max_gv ) \
-{ \
- mitkIpUInt4_t i; /* loopindex */\
- mitkIpUInt4_t no_elem; /* loopindex */\
- type help; /* element that should be transformed */\
- \
- /* transform greyvalues */\
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help = (( type * )pic->data )[i]; \
- (( type * )pic_new->data )[i] = \
- ( help < ( type ) gv_up ) ? \
- (( help > ( type ) gv_low ) ? help : ( type ) gv_low ) : \
- ( type ) gv_up ; \
- } \
-}
-
-/* ------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *mitkIpFuncSelMM ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up,
- mitkIpPicDescriptor *pic_return )
-{
- mitkIpFloat8_t min_gv, max_gv; /* max and min possible greyvalues */
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
-
-
- /* calculate max. and min. possible greyvalues */
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) == mitkIpFuncERROR )
- return ( mitkIpFuncERROR );
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( gv_low >= gv_up )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( min_gv > gv_low || max_gv < gv_up )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate memory for the transformed image */
-
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* macro to transform the image */
-
- mitkIpPicFORALL_4 ( SELECT, pic_old, gv_low, gv_up, min_gv, max_gv );
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-#endif
-
diff --git a/Utilities/IpFunc/Select.c b/Utilities/IpFunc/Select.c
deleted file mode 100644
index c720c793d7..0000000000
--- a/Utilities/IpFunc/Select.c
+++ /dev/null
@@ -1,160 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function sets the greyvalues of all pixels @e outside a given
- * range to a new greyvalue
- */
-
-/** @brief sets the greyvalues of all pixels @e outside a given
- * range to a new greyvalue
- *
- * The greyvalues of all pixels which are @e not included
- * in [gv_low, gv_up] are set to a new greyvalue (gv).
- *
- * @param pic_old pointer to original image
- * @param gv_low lower greyvalue of range
- * @param gv_up upper greyvalue of range
- * @param gv new greyvalue
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to transformed image
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncSelect ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up,
- mitkIpFloat8_t gv,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of macros */
-
-#define SELECT( type, pic, gv_low, gv_up, gv ) \
-{ \
- mitkIpUInt4_t i; /* loopindex */\
- type help; /* element that should be transformed */\
- \
- /* transform greyvalues */\
- \
- for ( i = 0; i < _mitkIpPicElements ( pic ); i++ ) \
- { \
- help = (( type * )pic->data )[i]; \
- (( type * )pic_new->data )[i] = \
- ( help < gv_low || help > gv_up ) ? \
- /*( help < ( type ) gv_low || help > ( type )gv_up ) ? iw-3.8.2000*/ \
- ( type ) gv : help; \
- } \
- \
-} \
-
-/* ------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *mitkIpFuncSelect ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up,
- mitkIpFloat8_t gv,
- mitkIpPicDescriptor *pic_return )
-{
- mitkIpFloat8_t min_gv, max_gv; /* max and min possible greyvalues */
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
-
-
- /* calculate max. and min. possible greyvalues */
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) == mitkIpFuncERROR )
- return ( mitkIpFuncERROR );
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( gv_low > gv_up )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-/* iw - commented out on 3.8.2000
- if ( min_gv > gv_low || max_gv < gv_up )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-*/
- if ( min_gv > gv || max_gv < gv )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate memory for the transformed image */
-
-
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* macro to transform the image */
-
- mitkIpPicFORALL_3 ( SELECT, pic_old, gv_low, gv_up, gv );
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-#endif
diff --git a/Utilities/IpFunc/SetErrno.c b/Utilities/IpFunc/SetErrno.c
deleted file mode 100644
index a19276cd0e..0000000000
--- a/Utilities/IpFunc/SetErrno.c
+++ /dev/null
@@ -1,138 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this functions sets a global error-number (mitkIpFuncErrno) if an error
- * occured
- */
-
-/** this functions sets a global error-number (mitkIpFuncErrno) if an error
- * occured
- *
- * @param error_no number which describes the error
- *
- * @return none
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)_mitkIpFuncSetErrno\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-/* gloabal variables */
-
-int mitkIpFuncErrno;
-
-/* ------------------------------------------------------------------- */
-
-/*
-** _mitkIpFuncSetErrno
-*/
-
-void _mitkIpFuncSetErrno ( int error_no )
-{
- mitkIpFuncErrno = error_no;
-
- return;
-}
-
-/* ------------------------------------------------------------------- */
-
-/*
-** mitkIpFuncPError
-*/
-
-
-void mitkIpFuncPError ( char *string )
-{
- char *err_string=NULL;
-
- switch ( mitkIpFuncErrno )
- {
- case mitkIpFuncOK :
- err_string = "ipFunc: no error occured";
- break;
- case mitkIpFuncNOPIC_ERROR :
- err_string = "no image";
- break;
- case mitkIpFuncDIM_ERROR :
- err_string = "ipFunc: incorrect dimension of image";
- break;
- case mitkIpFuncSIZE_ERROR :
- err_string = "ipFunc: incorrect image size";
- break;
- case mitkIpFuncFLAG_ERROR :
- err_string = "ipFunc: incorrect flag";
- break;
- case mitkIpFuncMALLOC_ERROR :
- err_string = "ipFunc: no memory allocated";
- break;
- case mitkIpFuncPICNEW_ERROR :
- err_string = "ipFunc: can't create pic_new";
- break;
- case mitkIpFuncTYPE_ERROR :
- err_string = "ipFunc: incorrect image data type ";
- break;
- case mitkIpFuncUNFIT_ERROR :
- err_string = "ipFunc: image data sizeis don't correspond";
- break;
- case mitkIpFuncDIMMASC_ERROR :
- err_string = "ipFunc: incorrect mask dimension";
- break;
- case mitkIpFuncDATA_ERROR :
- err_string = "ipFunc: incorrect value of parameter";
- break;
- default :
- err_string = "ipFunc: unknown error";
- }
- fprintf ( stderr, "error message: %s \n", err_string );
-}
-
-#endif
-
diff --git a/Utilities/IpFunc/SetTag.c b/Utilities/IpFunc/SetTag.c
deleted file mode 100644
index 557f532d57..0000000000
--- a/Utilities/IpFunc/SetTag.c
+++ /dev/null
@@ -1,113 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * this function sets a tag into an image
- */
-
-/** @brief sets a tag into an image
- * If the tag does not exist, it is created. Otherwise the existing
- * tag is replaced by the new one. If type==mitkIpPicASCII and the last
- * byte is not \0, a \0 is added.
- *
- * @param pic image into which the tag is set
- * @param name name of this tag
- * @param size size of the whole data
- * @param el_size size of one element of the data
- * @param data pointer to the data
- * @return
- * @arg 0 : error (pic==NULL or data==NULL)
- * @arg 1 : new tag added
- * @arg 2 : tag replaced
- *
- * @b Examples:
- * @code
- * mitkIpFuncSetTag(pic, "OUTSIDE_VALUE", mitkIpPicInt, sizeof(mitkIpInt4_t), 1, &outside_value);
- *
- * char startpoint[11];
- * memset(startpoint, 0, 11);
- * sprintf(startpoint,"(%u/%u)",*x,*y);
- * mitkIpFuncSetTag(p, "STARTPOINT", mitkIpPicASCII, 11, 1, startpoint);
- * @endcode
- * @warning not yet extensively tested.
- *
- * @author Ivo (based on Gerald's NewTag)
- * @date 26.06.2000
- */
-
-#include "mitkIpFuncP.h"
-
-int mitkIpFuncSetTag( mitkIpPicDescriptor *pic, char *name, int type, int size,
- int el_size, void *data )
-{
- mitkIpPicTSV_t *tsv;
- int alloc_size;
- int add_new;
-
- if((pic==NULL) || (data==NULL)) return 0;
-
- alloc_size=size;
- if((type==mitkIpPicASCII) && (((char*)data)[size-1]!=0)) alloc_size++;
-
- tsv = mitkIpPicQueryTag(pic, name);
- if (tsv != NULL)
- {
- tsv->value = realloc(tsv->value, alloc_size * el_size );
- add_new = 0;
- }
- else
- {
- tsv = malloc( sizeof(mitkIpPicTSV_t) );
- tsv->value = malloc( alloc_size * el_size );
- strcpy( tsv->tag, name);
- add_new = 1;
- }
- tsv->type = type;
- tsv->bpe = 8*el_size;
- tsv->dim = 1;
- tsv->n[0] = alloc_size;
- tsv->value = memmove( tsv->value, data, size * el_size );
- if(alloc_size!=size) ((char*)tsv->value)[size]=0;
-
- if(add_new==1)
- mitkIpPicAddTag( pic, tsv );
-
- return add_new+1;
-}
diff --git a/Utilities/IpFunc/ShapeInterpolation.c b/Utilities/IpFunc/ShapeInterpolation.c
deleted file mode 100644
index eb8bbe11da..0000000000
--- a/Utilities/IpFunc/ShapeInterpolation.c
+++ /dev/null
@@ -1,257 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-#include <assert.h>
-#include <math.h>
-#include "mitkIpFuncP.h"
-
-/*!
-The algorithm implements the shape-based interpolation technique.
-Further detailed information can be found in:
-
-G.T. Herman, J. Zheng, C.A. Bucholtz: "Shape-based interpolation"
-IEEE Computer Graphics & Applications, pp. 69-79,May 1992
-*/
-
-#define MAX 2048
-
-extern float truncf (float x);
-static mitkIpPicDescriptor* setup (mitkIpPicDescriptor* pic_old, const mitkIpFloat4_t threshold);
-static mitkIpInt2_t distance (const mitkIpInt2_t* const old_distance, const mitkIpInt2_t* mask_dist, const mitkIpInt2_t* mask_offset, const mitkIpUInt4_t mask_elements);
-
-#define INTERPOLATE(TYPE, RESULT, PIC0, PIC1) \
-{ \
- mitkIpInt4_t x, y; \
- mitkIpUInt4_t i; /* loop counters */ \
- mitkIpFloat4_t weight[] = {1.0f-ratio, ratio}; /* weights of the interpolants */ \
- mitkIpInt2_t mask_width = 1; /* mask width from center to border */ \
- mitkIpInt2_t mask_x[] = {0, -1, +1, 0, -1}; /* relativ position in x-axis of mask */ \
- mitkIpInt2_t mask_y[] = {0, 0, -1, -1, -1}; /* relativ position in y-axis of mask */ \
- /* mitkIpInt2_t mask_dist[] = {0, 3, 4, 3, 4}; */ \
- mitkIpInt2_t mask_dist[] = {0, 10, 14, 10, 14};/* distance to central element */ \
- mitkIpInt2_t mask_offset [5]; /* relative start position in given image */ \
- mitkIpUInt4_t mask_elements = 5; /* elements in distance mask */ \
- mitkIpInt2_t first_x, first_y; /* first pixel for distance calculation \
- in enlarged image version */ \
- mitkIpInt2_t last_x, last_y; /* last pixel for distance calculation \
- in enlarged image version */ \
- mitkIpInt2_t *pixel[2]; /* pointer to the current pixels */ \
- TYPE* pixel_out; \
- \
- /* apply the mask in both directions */ \
- for (i=0; i< mask_elements; i++) { \
- mask_offset [i] = mask_x[i] + mask_y[i]*(PIC0)->n[0]; \
- } \
- first_x = mask_width; \
- first_y = mask_width; \
- last_x = (PIC0)->n[0] - mask_width-1; \
- last_y = (PIC0)->n[1] - mask_width-1; \
- /* top-left to bottom-right, borders are neglected */ \
- for (y = first_y; y <= last_y; y++) { \
- pixel [0] = (mitkIpInt2_t *) (PIC0)->data + (first_x + y * (PIC0)->n [0]); \
- pixel [1] = (mitkIpInt2_t *) (PIC1)->data + (first_x + y * (PIC1)->n [0]); \
- for (x = first_x; x <= last_x; x++) { \
- *(pixel [0])++ = distance (pixel [0], mask_dist, mask_offset, mask_elements); \
- *(pixel [1])++ = distance (pixel [1], mask_dist, mask_offset, mask_elements); \
- } \
- } \
- /* bottom-right to top-left, borders are neglected */ \
- for (i=0; i< mask_elements; i++) { \
- mask_offset [i] = -mask_offset [i]; \
- } \
- pixel_out = (TYPE *) result->data + _mitkIpPicElements(result) - 1; \
- for (y = last_y; y >= first_y; y--) { \
- pixel [0] = (mitkIpInt2_t *) (PIC0)->data + (last_x + y * (PIC0)->n [0]); \
- pixel [1] = (mitkIpInt2_t *) (PIC1)->data + (last_x + y * (PIC1)->n [0]); \
- for (x = last_x; x >= first_x; x--) { \
- *(pixel [0]) = distance (pixel [0], mask_dist, mask_offset, mask_elements); \
- *(pixel [1]) = distance (pixel [1], mask_dist, mask_offset, mask_elements); \
- *pixel_out-- = (weight [0] * *(pixel [0]) + weight [1] * *(pixel[1]) > 0 ? 1 : 0); \
- pixel[0]--; \
- pixel[1]--; \
- } \
- } \
-}
-
-/*!
-\brief Computes an intermediate image by linear shape-based interpolation.
-@param pic1,pic2 the images which enclose the intermediate image
-@param threshold the threshold which extracts the shape in the images
-@param ratio the ratio the ratio specifies the weights for interpolation, i.e. the intermediate
-image equals to pic1 or pic2 if the ratio is zero and one, respectively
-@returns the intermediate image
-*/
-mitkIpPicDescriptor*
-mitkIpFuncShapeInterpolation (mitkIpPicDescriptor* pic1, mitkIpPicDescriptor* pic2, const mitkIpFloat4_t threshold, const mitkIpFloat4_t ratio, mitkIpPicDescriptor* result)
-{
- mitkIpPicDescriptor *pic[2]; /* pointer to image data */
-
- /* prepare the images */
- result = mitkIpPicCopyHeader(pic1, NULL);
- if (result == NULL) {
- return NULL;
- }
- result->data = malloc (_mitkIpPicSize (result));
- if (result->data == NULL) {
- _mitkIpFuncSetErrno (mitkIpFuncMALLOC_ERROR);
- mitkIpPicFree (result);
- return NULL;
- }
- pic[0] = setup (pic1, threshold);
- pic[1] = setup (pic2, threshold);
-
- mitkIpPicFORALL_2(INTERPOLATE, result, pic[0], pic[1]);
-
- mitkIpPicFree(pic [0]);
- mitkIpPicFree(pic [1]);
- return result;
-}
-
-#define COPY(TYPE, SRC, DST, THRESH) \
-{ \
- TYPE* src; \
- mitkIpInt2_t* dst; \
- src = (TYPE *) (SRC)->data; \
- dst = (mitkIpInt2_t *) (DST)->data + (1 + (DST)->n[0]); \
- for (y = 0; y < (SRC)->n[1]; y++) { \
- for (x = 0; x < (SRC)->n[0]; x++) { \
- *dst++ = (*src++ > (THRESH) ? MAX : -MAX); \
- } \
- dst += 2; \
- } \
-}
-
-static mitkIpPicDescriptor*
-setup (mitkIpPicDescriptor* pic_old, const mitkIpFloat4_t threshold)
-{
- mitkIpPicDescriptor* pic;
- mitkIpInt2_t* dst;
- mitkIpUInt4_t x, y;
-
- /* Allocate new image for distance transform */
-
- pic = mitkIpPicCopyHeader (pic_old, NULL);
- pic->type = mitkIpPicInt;
- pic->bpe = 16;
- pic->n[0] += 2;
- pic->n[1] += 2;
- pic->data = malloc (_mitkIpPicSize (pic));
-
- /* Set the frame to -1 */
-
- dst = (mitkIpInt2_t *) pic->data;
- for (x = 0; x < pic->n[0]; x++) {
- *dst++ = -MAX;
- }
- dst = (mitkIpInt2_t *) pic->data + _mitkIpPicElements (pic) - pic->n[0];
- for (x = 0; x < pic->n[0]; x++) {
- *dst++ = -MAX;
- }
- dst = (mitkIpInt2_t *) pic->data;
- for (y = 0; y < pic->n[1]; y++) {
- *dst = -MAX;
- dst += pic->n[0];
- }
- dst = (mitkIpInt2_t *) pic->data + (pic->n[0] - 1);
- for (y = 0; y < pic->n[1]; y++) {
- *dst = -MAX;
- dst += pic->n[0];
- }
-
- /* Set the image data to initial values */
-
- mitkIpPicFORALL_2(COPY, pic_old, pic, threshold);
- dst = (mitkIpInt2_t *) pic->data + (1 + pic->n[0]);
- for (y = 0; y < pic_old->n[1]; y++) {
- for (x = 0; x < pic_old->n[0]; x++) {
- if ((dst[0] < dst[1]) || (dst[0] < dst[pic->n[0]])) {
- *dst = -5;
- } else if ((dst[0] > dst[1]) || (dst[0] > dst[pic->n[0]])) {
- *dst = 5;
- }
- dst++;
- }
- dst += 2;
- }
- dst -= 2;
- for (y = 0; y < pic_old->n[1]; y++) {
- for (x = 0; x < pic_old->n[0]; x++) {
- dst--;
- if (abs (dst[0]) > 5) {
- if ((dst[0] < dst[-1]) || (dst[0] < dst[-pic->n[0]])) {
- *dst = -5;
- } else if ((dst[0] > dst[-1]) || (dst[0] > dst[-pic->n[0]])) {
- *dst = 5;
- }
- }
- }
- }
- return pic;
-}
-
-static mitkIpInt2_t distance (const mitkIpInt2_t* const old_distance, const mitkIpInt2_t* mask_dist, const mitkIpInt2_t* mask_offset, const mitkIpUInt4_t mask_elements)
-{
- mitkIpInt2_t cur_distance, new_distance;
- mitkIpUInt4_t i;
-
- cur_distance = old_distance [0];
- if (abs (cur_distance) != 5) {
- if (cur_distance > 0) {
- for (i = 0; i < mask_elements; i++) {
- new_distance = *mask_dist + old_distance [*mask_offset];
- if (new_distance < cur_distance) {
- cur_distance = new_distance;
- }
- mask_dist++;
- mask_offset++;
- }
- } else if (cur_distance < 0) {
- for (i = 0; i < mask_elements; i++) {
- new_distance = old_distance [*mask_offset] - *mask_dist;
- if (new_distance > cur_distance) {
- cur_distance = new_distance;
- }
- mask_dist++;
- mask_offset++;
- }
- }
- }
- return cur_distance;
-}
diff --git a/Utilities/IpFunc/Shp.c b/Utilities/IpFunc/Shp.c
deleted file mode 100644
index 7361bc744f..0000000000
--- a/Utilities/IpFunc/Shp.c
+++ /dev/null
@@ -1,165 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs a high pass filter using 2D or 3D filtering
- * masks
- */
-
-/** @brief performs a high pass filter using 2D or 3D filtering
- * masks
- *
- * @param pic_old pointer to the image that should be convolved
- * @param dim_mask dimension of filtering mask
- * @param border tells how the edge is transformed
- * @arg @c mitkIpFuncBorderOld : original greyvalues
- * @arg @c mitkIpFuncBorderZero : edge is set to zero
- * @param mask_nr tells which mask should be taken
- *
- * @return pointer to the tranformed image
- *
- * USES
- * function mitkIpFuncConv: convolves image with mask
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncShp ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border,
- mitkIpUInt4_t mask_nr ) ;
-#ifndef DOXYGEN_IGNORE
-
-mitkIpPicDescriptor *mitkIpFuncShp ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border,
- mitkIpUInt4_t mask_nr )
-{
-
- mitkIpPicDescriptor *pic_new; /* convolved image */
- mitkIpPicDescriptor *pic_mask; /* high pass mask */
- mitkIpUInt4_t i; /* loop index */
- mitkIpInt2_t mask2[] = /* 2D masks */
- { 0, -1, 0, -1, 5, -1, 0, -1, 0, /* mask 0 */
-
- 1, -2, 1, -2, 5, -2, 1, -2, 1, /* mask 1 */
-
- -1, -1, -1, -1, 9, -1, -1, -1, -1 }; /* mask 2 */
-
- mitkIpInt2_t mask3[] = /* 3D masks */
- { 0, 0, 0, 0, -1, 0, 0, 0, 0, /* mask 0 */
- 0, -1, 0, -1, 7, -1, 0, -1, 0,
- 0, 0, 0, 0, -1, 0, 0, 0, 0,
-
- 1, 1, 1, 1, -4, 1, 1, 1, 1, /* mask 1 */
- 1, -4, 1, -4, 5, -4, 1, -4, 1,
- 1, 1, 1, 1, -4, 1, 1, 1, 1,
-
- -1, -1, -1, -1, -1, -1, -1, -1, -1, /* mask 2 */
- -1, -1, -1, -1, 27, -1, -1, -1, -1,
- -1, -1, -1, -1, -1, -1, -1, -1, -1 };
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( pic_old->dim < dim_mask || dim_mask < 2 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( /* mask_nr < 0 || */ mask_nr > 2 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialisation of pic_mask */
-
- pic_mask = mitkIpPicNew ();
- if ( pic_mask == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- pic_mask->type = mitkIpPicInt;
- pic_mask->bpe = 16;
- pic_mask->dim = dim_mask;
- for ( i = 0; i < dim_mask; i++ )
- pic_mask->n[i] = 3;
-
- if ( dim_mask == 3 )
- {
- pic_mask->data = mask3 + mask_nr * 27;
- }
- else if ( dim_mask == 2 )
- {
- pic_mask->data = mask2 + mask_nr * 9;
- }
- else
- {
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* function to convolve image with mask */
-
- pic_new = mitkIpFuncConv ( pic_old, pic_mask, border );
-
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/Skewness.c b/Utilities/IpFunc/Skewness.c
deleted file mode 100644
index e0ca5872c7..0000000000
--- a/Utilities/IpFunc/Skewness.c
+++ /dev/null
@@ -1,116 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the skewness (Schiefe) of all
- * greyvalues in an image
- */
-
-/** @brief calculates the skewness (Schiefe) of all
- * greyvalues in an image
- *
- * @param pic pointer to the image
- *
- * @return skewness of image
- *
- * @author Steffen Gundel
- */
-
-
-/* include-files */
-
-#include "mitkIpFuncP.h"
-
-/* definition of extreme value macro */
-
-mitkIpFloat8_t mitkIpFuncSkewness ( mitkIpPicDescriptor *pic );
-
-#ifndef DOXYGEN_IGNORE
-
-#define SKEWNESS( type, pic, mean, skew ) \
- { \
- mitkIpUInt4_t i, no_elem; \
- \
- skew = 0.; \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- skew = ( ( ( type * ) pic->data ) [i] - mean ) * \
- ( ( ( type * ) pic->data ) [i] - mean ) * \
- ( ( ( type * ) pic->data ) [i] - mean ) + \
- skew; \
- } \
- }
-
-/* ========================================================== */
-/*
-** function picVar : calculates the mean value (mean)
-** of an image (pic)
-*/
-/* ========================================================== */
-
-mitkIpFloat8_t mitkIpFuncSkewness ( mitkIpPicDescriptor *pic )
-{
-
- mitkIpFloat8_t var;
- mitkIpFloat8_t mean, std;
- mitkIpFloat8_t skew;
-
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic ) != mitkIpOK ) return ( mitkIpFuncERROR );
-
- if ( _mitkIpPicElements ( pic ) == 1 ) var = 0;
- else
- {
-
- mean = mitkIpFuncMean ( pic );
- std = mitkIpFuncSDev( pic );
-
- mitkIpPicFORALL_2( SKEWNESS, pic, mean, skew );
-
- var = skew / (( mitkIpFloat8_t ) (( _mitkIpPicElements ( pic ) - 1 ) *std*std*std));
- }
-
- return( var );
-}
-#endif
diff --git a/Utilities/IpFunc/SkewnessR.c b/Utilities/IpFunc/SkewnessR.c
deleted file mode 100644
index e132e6d9de..0000000000
--- a/Utilities/IpFunc/SkewnessR.c
+++ /dev/null
@@ -1,87 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the skewness (Schiefe) of all
- * greyvalues included by a rectangle
- */
-
-/** @brief calculates the skewness (Schiefe) of all
- * greyvalues included by a rectangle
- *
- * The rectangle is described by a vector with the coordinates of the
- * upper left corner and a vector of its length in each direction
- *
- * @param pic_old pointer to the image
- * @param begin vector with the beginning coordinates of the window
- * @param length vector with the length of the window in each direction
- *
- * @return skewness in window
- *
- * @author Steffen Gundel
- */
-
-/* include-files */
-
-#include "mitkIpFuncP.h"
-
-
-/* ========================================================== */
-/*
-** function picVar : calculates the mean value (mean)
-** of an image (pic)
-*/
-/* ========================================================== */
-
-mitkIpFloat8_t mitkIpFuncSkewnessR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length ) {
-
- mitkIpFloat8_t var;
- mitkIpPicDescriptor *pic_help;
-
- pic_help = mitkIpFuncWindow ( pic_old, begin, length );
-
- var = mitkIpFuncSkewness ( pic_help );
-
- mitkIpPicFree ( pic_help );
-
- return var ;
-}
diff --git a/Utilities/IpFunc/Sobel.c b/Utilities/IpFunc/Sobel.c
deleted file mode 100644
index c54dc7b7fb..0000000000
--- a/Utilities/IpFunc/Sobel.c
+++ /dev/null
@@ -1,348 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs a 3*3 nonlinear edge enhancement operation
- * using a sobel operator. The operator could be used with 2D and 3D
- * filtering masks.
- */
-
-/** @brief performs a 3*3 nonlinear edge enhancement operation
- * using a sobel operator. The operator could be used with 2D and 3D
- * filtering masks.
- *
- * @param pic_old pointer to the image that should be convolved
- * @param mask pointer to the mask that is used for convolution
- * @param border tells how the edge is transformed
- * @arg @c mitkIpFuncBorderOld : original greyvalues
- * @arg @c mitkIpFuncBorderZero : edge is set to minimal greyvalue
- *
- * @return pointer to the transformed image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncSobel ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macros */
-
-#define SOBEL( typ, pic, size, mask_anz, m ) \
-{ \
- mitkIpInt4_t ind[_mitkIpPicNDIM]; \
- mitkIpInt4_t n[_mitkIpPicNDIM]; \
- mitkIpUInt4_t i,j; \
- mitkIpInt4_t offset; \
- mitkIpInt4_t *beg; \
- mitkIpFloat8_t help, help2, min_gv, max_gv; \
- \
- /* calculate begin and end of the single masks */ \
- \
- beg = malloc ( ( mask_anz + 1 ) * sizeof ( mitkIpInt4_t ) ); \
- \
- beg[0] = 0; \
- for ( i = 1; i <= mask_anz; i++ ) \
- beg[i] = beg[i-1] + m->length / mask_anz; \
- \
- /* initialization of index vector */ \
- \
- for ( i = 0; i < pic->dim; i++ ) \
- n[i] = pic->n[i] - 1; \
- \
- for ( i = pic->dim; i < _mitkIpPicNDIM; i++ ) \
- n[i] = 2; \
- \
- /* calculate max. and min. possible greyvalues */ \
- \
- _mitkIpFuncExtT ( pic->type, pic->bpe, &min_gv, &max_gv ); \
- \
- /* convolve image with compressed mask */ \
- \
- for ( ind[7] = 1; ind[7] < n[7]; ind[7]++ ) \
- for ( ind[6] = 1; ind[6] < n[6]; ind[6]++ ) \
- for ( ind[5] = 1; ind[5] < n[5]; ind[5]++ ) \
- for ( ind[4] = 1; ind[4] < n[4]; ind[4]++ ) \
- for ( ind[3] = 1; ind[3] < n[3]; ind[3]++ ) \
- for ( ind[2] = 1; ind[2] < n[2]; ind[2]++ ) \
- for ( ind[1] = 1; ind[1] < n[1]; ind[1]++ ) \
- for ( ind[0] = 1; ind[0] < n[0]; ind[0]++ ) \
- { \
- offset = 0; \
- for ( i = 0; i < pic->dim; i++ ) \
- offset = offset + size[i] * ind[i]; \
- \
- help2 = 0.; \
- for ( j = 0; j < mask_anz; j++ ) \
- { \
- help = 0; \
- for ( i = beg[j]; i < beg[j+1] ; i++ ) \
- help = help + m->mask_vekt[i] * \
- (( typ * )pic->data)[offset+m->off_vekt[i]];\
- help2 = help2 + fabs ( help ); \
- } \
- \
- (( typ * )pic_new->data )[offset] = \
- ( help2 < max_gv )? \
- ( ( help2 < min_gv ) ? ( typ )min_gv : help2 ) : \
- ( typ ) max_gv; \
- } \
- free ( beg ); \
-}
-
-/* ------------------------------------------------------------------- */
-/*
-** function mitkIpFuncSobel:
-**
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncSobel ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border )
-{
-
- mitkIpPicDescriptor *pic_new; /* convolved image */
- mitkIpPicDescriptor *pic_mask; /* sobel mask */
- mitkIpInt4_t offset, off_mask;
- mitkIpUInt4_t i, j; /* loopindex */
- mitkIpUInt4_t pos;
- mitkIpUInt1_t mask_anz; /* number of masks */
- mitkIpInt4_t n[_mitkIpPicNDIM];
- mitkIpInt4_t ind[_mitkIpPicNDIM]; /* vector of loop indices (image) */
- mitkIpFuncMasc_t *m; /* length of mask and offsets */
- mitkIpUInt4_t size[_mitkIpPicNDIM];
- mitkIpInt2_t sobel2[] = /* 2D Sobel mask */
- { 1, 0, -1, 2, 0, -2, 1, 0, -1,
- 1, 2, 1, 0, 0, 0, -1, -2, -1 };
- mitkIpInt2_t sobel3[] = /* 3D Sobel mask */
- { 1, 0, -1, 2, 0, -2, 1, 0, -1,
- 1, 0, -1, 2, 0, -2, 1, 0, -1,
- 1, 0, -1, 2, 0, -2, 1, 0, -1,
-
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
- 2, 0, -2, 2, 0, -2, 2, 0, -2,
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
-
- 1, 2, 1, 0, 0, 0, -1, -2, -1,
- 1, 2, 1, 0, 0, 0, -1, -2, -1,
- 1, 2, 1, 0, 0, 0, -1, -2, -1,
-
- 1, 1, 1, 0, 0, 0, -1, -1, -1,
- 2, 2, 2, 0, 0, 0, -2, -2, -2,
- 1, 1, 1, 0, 0, 0, -1, -1, -1,
-
- 1, 2, 1, 1, 2, 1, 1, 2, 1,
- 0, 0, 0, 0, 0, 0, 0, 0, 0,
- -1, -2, -1, -1, -2, -1, -1, -2, -1,
-
- 1, 1, 1, 2, 2, 2, 1, 1, 1,
- 0, 0, 0, 0, 0, 0, 0, 0, 0,
- -1, -1, -1, -2, -2, -2, -1, -1, -1 };
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( ( pic_old->dim < dim_mask ) || ( dim_mask < 1 ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIMMASC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialisation of pic_mask */
-
- pic_mask = mitkIpPicNew ();
- if ( pic_mask == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- pic_mask->type = mitkIpPicInt;
- pic_mask->bpe = 16;
- pic_mask->dim = dim_mask+1;
- for ( i = 0; i < dim_mask; i++ )
- pic_mask->n[i] = 3;
-
- if ( dim_mask == 3 )
- {
- mask_anz = 6;
- pic_mask->n[dim_mask] = mask_anz;
- pic_mask->data = sobel3;
- }
- else if ( dim_mask == 2 )
- {
- mask_anz = 2;
- pic_mask->n[dim_mask] = mask_anz;
- pic_mask->data = sobel2;
- }
- else
- {
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* initialisation of vectors */
-
- for ( i = 0; i < dim_mask; i++ )
- n[i] = 2;
-
- for ( i = dim_mask; i < _mitkIpPicNDIM; i++ )
- n[i] = 0;
-
- /* allocate mask structure */
-
- m = malloc ( sizeof ( mitkIpFuncMasc_t ) );
- if ( m == NULL )
- {
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return NULL;
- }
- m->off_vekt = malloc ( _mitkIpPicElements( pic_mask ) * sizeof ( mitkIpInt4_t ) );
- if ( m->off_vekt == NULL )
- {
- free ( m );
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return NULL;
- }
- m->mask_vekt = malloc ( _mitkIpPicElements( pic_mask ) * sizeof ( mitkIpFloat8_t ) );
- if ( m->mask_vekt == NULL )
- {
- free ( m->off_vekt );
- free ( m );
- mitkIpPicFree ( pic_mask );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return NULL;
- }
-
- /* create a new picture, copy the header, allocate memory */
-
- if ( border == mitkIpFuncBorderOld )
- pic_new = mitkIpPicClone ( pic_old );
- else if ( border == mitkIpFuncBorderZero )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, 0 );
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- free ( m->off_vekt );
- free ( m );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- free ( m->off_vekt );
- free ( m );
- return ( mitkIpFuncERROR );
- }
-
- /* calculate offset vector for the compressed mask */
-
- m->length = 0;
- size[0] = 1;
- for ( i = 1; i < pic_old->dim; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
-
- off_mask = 0;
- for ( i = 0; i < mask_anz; i++ )
- for ( ind[2] = -1; ind[2] < n[2]; ind[2]++ )
- for ( ind[1] = -1; ind[1] < n[1]; ind[1]++ )
- for ( ind[0] = -1; ind[0] < n[0]; ind[0]++ )
- {
- if ( (( mitkIpInt2_t * )pic_mask->data)[off_mask] != 0 )
- {
- offset = 0;
- for ( j = 0; j < dim_mask; j++ )
- offset = offset + ind[j] * size[j];
- m->off_vekt[m->length] = offset;
- m->length++;
- }
- off_mask++;
- }
-
- /* remove elements that are zero from mask */
-
- pos = 0;
- for ( i = 0; i < m->length; i++ )
- {
- while ( (( mitkIpInt2_t * )pic_mask->data)[pos] == 0 ) pos++;
- m->mask_vekt[i] = ( mitkIpFloat8_t )(( mitkIpInt2_t * )pic_mask->data)[pos];
- pos++;
- }
-
-
- /* macro for the sobel operator */
-
- mitkIpPicFORALL_3 ( SOBEL, pic_old, size, mask_anz, m );
-
- pic_mask->data = NULL;
- mitkIpPicFree ( pic_mask );
- free ( m->off_vekt );
- free ( m->mask_vekt );
- free ( m );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/Sqrt.c b/Utilities/IpFunc/Sqrt.c
deleted file mode 100644
index 2cc5b7d7c7..0000000000
--- a/Utilities/IpFunc/Sqrt.c
+++ /dev/null
@@ -1,166 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this functions calculates the square root of all pixels
- */
-
-/** @brief calculates the square root of all pixels
- *
- * @param pic_1 pointer to the first image
- * @param keep tells whether the image type could be changed to mitkIpPicFloat
- * keep = : image data type could be changed
- * keep = : image data type of original pictures is
- * kept (if there will be an over-/underflow
- * the max. or min. possible greyvalue is taken)
- * @param pic_return memory which could be used for pic_new. If
- * pic_retrun == NULL new memory is allocated
- *
- * @return pointer to the new image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncSqrt ( mitkIpPicDescriptor *pic_1,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macros */
-
-#define SQRT1( type_1, pic_1, pic_new ) \
-{ \
- mitkIpPicFORALL_2 ( SQRT2, pic_new, pic_1, type_1 ); \
-} \
-
-
-#define SQRT2( type_n, pic_new, pic_1, type_1 ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- mitkIpFloat8_t help; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help = ( mitkIpFloat8_t ) (( type_1 * ) pic_1->data ) [i]; \
- (( type_n * ) pic_new->data ) [i] = \
- ( help < 0. ) ? 0 : ( type_n ) sqrt ( help ); \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncSqrt ( mitkIpPicDescriptor *pic_1,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpUInt4_t i; /* loop index */
- mitkIpFloat8_t min1, max1; /* extreme greyvalues of 1. image */
-
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max. and min. greyvalues of both images */
-
- if ( mitkIpFuncExtr ( pic_1, &min1, &max1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max. and min. possible greyvalues for data type of images*/
-
- /* find out data type of new iamge */
-
- if ( keep == mitkIpFuncKeep )
- {
- pic_new = _mitkIpFuncMalloc ( pic_1, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
- }
- else if ( keep == mitkIpFuncNoKeep )
- {
- pic_new = mitkIpPicNew ();
- pic_new->dim = pic_1->dim;
- pic_new->bpe = 64;
- pic_new->type = mitkIpPicFloat;
- for ( i = 0; i < pic_new->dim; i++ )
- pic_new->n[i] = pic_1->n[i];
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( keep == mitkIpFuncNoKeep )
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to invert the picture (for all data types) */
-
- mitkIpPicFORALL_1 ( SQRT1, pic_1, pic_new )
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_1);
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/SubC.c b/Utilities/IpFunc/SubC.c
deleted file mode 100644
index 79bb2c42ae..0000000000
--- a/Utilities/IpFunc/SubC.c
+++ /dev/null
@@ -1,254 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function subtracts an constant from an image
- */
-
-/** @brief subtracts an constant from an image
- *
- * @param pic_1 pointer to the first image
- * @param value constant which is subtracted from the image
- * @param keep tells whether the image type could be changed when
- * necessary
- * @arg @c iFuncNoKeep : image data type could be changed
- * @arg @c iFuncKeep : image data type of original pictures is
- * kept (if there will be an over-/underflow
- * the max. or min. possible greyvalue is taken)
- * @param pic_return memory which could be used for pic_new. If
- * pic_retrun == NULL new memory is allocated
- *
- * @return pointer to the new image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncSubC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macros */
-
-#define SUBC( type_1, pic_1, pic_new, value ) \
-{ \
- mitkIpPicFORALL_3 ( SUBC2, pic_new, pic_1, type_1, value ); \
-} \
-
-#define SUBC2( type_n, pic_new, pic_1, type_1, value ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type_n * ) pic_new->data ) [i] = ( type_n ) \
- ( ( mitkIpFloat8_t ) (( type_1 * ) pic_1->data ) [i] - \
- value ); \
- } \
-}
-
-#define SUBC3( type_n, pic_1, pic_new, value ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- type_n help; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help = (( type_n * ) pic_1->data ) [i]; \
- (( type_n * ) pic_new->data ) [i] = \
- ( max_gv > ( mitkIpFloat8_t ) help - value ) ? \
- (( min_gv < ( mitkIpFloat8_t ) help - value ) ? \
- ( (type_n)help - (type_n)value ) : ( type_n ) min_gv ) :\
- ( type_n ) max_gv; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncSubC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpFloat8_t min1, max1; /* extreme greyvalues of 1. image */
- mitkIpFloat8_t smin, smax; /* product of extreme greyvalues */
-
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* check value */
-
- if ( value == 0. ) return ( pic_old );
- /*
- else if ( value == 0. )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- */
- /* calculate max. and min. possible greyvalues for data type of images*/
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* find out data type of new iamge */
-
- if ( keep == mitkIpFuncKeep )
- {
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
- }
- else if ( keep == mitkIpFuncNoKeep )
- {
- /* calculate max. and min. greyvalues of both images */
-
- if ( mitkIpFuncExtr ( pic_old, &min1, &max1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- smax = max1 - value;
- smin = min1 - value;
-
- /* change image type of images of type mitkIpPicInt */
-
- if ( pic_old->type == mitkIpPicInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_old->type == mitkIpPicUInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- pic_new->type = mitkIpPicInt;
- pic_new->bpe = 16;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- if ( smax > max_gv || smin < min_gv )
- {
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_old->type == mitkIpPicFloat )
- {
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( keep == mitkIpFuncNoKeep )
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to invert the picture (for all data types) */
-
- if ( keep == mitkIpFuncNoKeep )
- mitkIpPicFORALL_2 ( SUBC, pic_old, pic_new, value )
- if ( keep == mitkIpFuncKeep )
- mitkIpPicFORALL_2 ( SUBC3, pic_old, pic_new, value )
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/SubI.c b/Utilities/IpFunc/SubI.c
deleted file mode 100644
index 3912d08d91..0000000000
--- a/Utilities/IpFunc/SubI.c
+++ /dev/null
@@ -1,269 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function subtracts two images
- */
-
-/** @brief subtracts two images
- *
- * @param pic_1 pointer to the first image
- * @param pic_2 pointer to the second image
- * @param keep tells whether the image type could be changed when
- * necessary
- * keep = : image data type could be changed
- * keep = : image data type of original pictures is
- * kept (if there will be an over-/underflow
- * the max. or min. possible greyvalue is taken)
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the new image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncSubI ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macros */
-
-#define SUBI( type_1, pic_1, pic_2, pic_new ) \
-{ \
- mitkIpPicFORALL_3 ( SUBI2, pic_new, pic_1, pic_2, type_1 ); \
-} \
-
-#define SUBI2( type_n, pic_new, pic_1, pic_2, type_1 ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type_n * ) pic_new->data ) [i] = \
- (( type_1 * ) pic_1->data ) [i] - \
- (( type_1 * ) pic_2->data ) [i]; \
- } \
-}
-
-#define SUBI3( type_n, pic_1, pic_2, pic_new ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- type_n help; \
- type_n help2; \
- \
- no_elem = _mitkIpPicElements ( pic_1 ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- help = (( type_n * ) pic_1->data ) [i]; \
- help2 = (( type_n * ) pic_2->data ) [i]; \
- (( type_n * ) pic_new->data ) [i] = \
- ( max_gv > ( mitkIpFloat8_t ) help - ( mitkIpFloat8_t ) help2 ) ? \
- (( min_gv < ( mitkIpFloat8_t ) help - ( mitkIpFloat8_t ) help2 ) ? \
- ( (type_n)help - (type_n)help2 ) : ( type_n ) min_gv ) :\
- ( type_n ) max_gv; \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncSubI ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* pointer to new image */
- mitkIpUInt4_t i; /* loop index */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
- mitkIpFloat8_t min1, max1; /* extreme greyvalues of 1. image */
- mitkIpFloat8_t min2, max2; /* extreme greyvalues of 2. image */
- mitkIpFloat8_t smin, smax; /* product of extreme greyvalues */
-
-
- /* ckeck whether data are correct */
-
- if ( _mitkIpFuncError ( pic_1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( pic_2 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* check whether images have the same size */
-
- if ( ( pic_1->type != pic_2->type ) || ( pic_1->bpe != pic_2->bpe ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
- if ( pic_1->dim == pic_2->dim )
- for ( i = 0; i < _mitkIpPicNDIM; i++ )
- {
- if ( pic_1->n[i] != pic_2->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncUNFIT_ERROR );
- return NULL;
- }
-
- /* calculate max. and min. possible greyvalues for data type of images*/
-
- if ( _mitkIpFuncExtT ( pic_1->type, pic_1->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- return ( mitkIpFuncERROR );
-
- /* find out data type of new iamge */
-
- if ( keep == mitkIpFuncKeep )
- {
- pic_new = _mitkIpFuncMalloc ( pic_1, pic_return, mitkIpOVERWRITE );
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
- }
- else if ( keep == mitkIpFuncNoKeep )
- {
- /* calculate max. and min. greyvalues of both images */
-
- if ( mitkIpFuncExtr ( pic_1, &min1, &max1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( mitkIpFuncExtr ( pic_2, &min2, &max2 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- smax = max1 - max2;
- smin = min1 - min2;
-
- /* change image type of images of type mitkIpPicInt */
-
- if ( pic_1->type == mitkIpPicInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_1->type == mitkIpPicUInt )
- {
- if ( smax < max_gv && smin > min_gv )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- pic_new->type = mitkIpPicInt;
- pic_new->bpe = 16;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- if ( smax > max_gv || smin < min_gv )
- {
- pic_new->type = mitkIpPicFloat;
- pic_new->bpe = 64;
- _mitkIpFuncExtT ( pic_new->type, pic_new->bpe, &min_gv, &max_gv );
- }
- }
- }
-
- /* change image type of images of type mitkIpPicUInt */
-
- else if ( pic_1->type == mitkIpPicFloat )
- {
- pic_new = mitkIpPicCopyHeader ( pic_1, NULL );
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
- else
- {
- _mitkIpFuncSetErrno ( mitkIpFuncFLAG_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- if ( keep == mitkIpFuncNoKeep )
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* macro to invert the picture (for all data types) */
-
- if ( keep == mitkIpFuncNoKeep )
- mitkIpPicFORALL_2 ( SUBI, pic_1, pic_2, pic_new )
- else if ( keep == mitkIpFuncKeep )
- mitkIpPicFORALL_2 ( SUBI3, pic_1, pic_2, pic_new )
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_1);
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/Thresh.c b/Utilities/IpFunc/Thresh.c
deleted file mode 100644
index c2edfc4f9e..0000000000
--- a/Utilities/IpFunc/Thresh.c
+++ /dev/null
@@ -1,138 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function performs a thresholding operation with a single theshold
- */
-
-/** @brief performs a thresholding operation with a single theshold
-
- * All greyvalues above the threshold are set to the maximal possible
- * greyvalue and all greyvalues below this threshold to the minimal greyvalue.
- * @param pic_old pointer to the image that should be transformed
- * @param threshold threshold
- * @param pic_return memory used to store return image ( if pic_return == NULL
- * new memory is allocated )
- *
- * @return pointer to the transformed image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncThresh ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t threshold,
- mitkIpPicDescriptor *pic_return );
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macro for normalisation */
-
-#define THRESH( type, pic ) \
-{ \
- mitkIpUInt4_t i, no_elem; \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- (( type * ) pic_new->data ) [i] = \
- ( (( type * ) pic->data ) [i] > ( type ) threshold ) ? \
- ( type ) 1 : ( type ) 0; \
- } \
-}
-
-
-/* ------------------------------------------------------------------- */
-/*
-** function picThresh:
-**
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncThresh ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t threshold,
- mitkIpPicDescriptor *pic_return )
-{
-
- mitkIpPicDescriptor *pic_new; /* inverted picture */
- mitkIpFloat8_t max_gv; /* max. possible greyvalue */
- mitkIpFloat8_t min_gv; /* min. possible greyvalue */
-
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* calculate max. or min possible greyvalue for datatype */
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) == mitkIpFuncERROR )
- return ( mitkIpFuncERROR );
-
- /* test whether threshold is ok */
-
- if ( threshold < min_gv || threshold > max_gv )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* create a new picture, copy the header, allocate memory */
-
- pic_new = _mitkIpFuncMalloc ( pic_old, pic_return, mitkIpOVERWRITE );
-
- if ( pic_new == NULL ) return ( mitkIpFuncERROR );
-
- /* macro to invert the picture (for all data types) */
-
- mitkIpPicFORALL( THRESH, pic_old );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return pic_new;
-}
-#endif
-
diff --git a/Utilities/IpFunc/Transpose.c b/Utilities/IpFunc/Transpose.c
deleted file mode 100644
index 2eefa02b81..0000000000
--- a/Utilities/IpFunc/Transpose.c
+++ /dev/null
@@ -1,244 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this funtion transposes the image
- */
-
-/** @brief transposes the image, i.e. a permutation of the axes is performed
- *
- *
- * @param pic pointer to picture
- * @param pic_old pointer to old picture, which is not used in this version
- * @param permutations_vector indicates the permutation
- * @par Example 3 1 2
- * @arg third axis will be the first axis
- * @arg first axis will be the second
- * @arg second axis will be the third
- *
- * @return transposed image
- *
- * $Log$
- * Revision 1.3 2003/01/30 14:30:53 mark
- * in Scale.c _mitkIpFuncScaleBL auskommentiert, wegen Fehler
- *
- * Revision 1.2 2000/05/24 15:29:43 tobiask
- * Changed the installation paths of the package.
- *
- * Revision 1.4 2000/05/04 12:52:11 ivo
- * inserted BSD style license
- *
- * Revision 1.3 2000/03/06 17:02:48 ivo
- * ipFunc now with doxygen documentation.
- *
- * Revision 1.2 2000/02/18 14:58:08 ivo
- * Tags are now copied into newly allocated images.
- * Bugs fixed in mitkIpFuncFrame, mitkIpFuncRegGrow, _mitkIpFuncBorderX and mitkIpFuncHitMiss.
- *
- * Revision 1.1.1.1 1998/07/16 12:04:50 antje
- * initial import
- *
- * Revision 1.1 1995/04/06 12:04:30 uli
- * Initial revision
- */
-
-/*
-** ipFunc includefiles
-*/
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncTranspose( mitkIpPicDescriptor *pic,
- mitkIpPicDescriptor *pic_old,
- int *permutations_vector )
-;
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncTranspose\tGerman Cancer Research Center (DKFZ) $Revision$ "__DATE__ };
-#endif
-
-
-
-
-/*
-** the action starts here
-*/
-mitkIpPicDescriptor *mitkIpFuncTranspose( mitkIpPicDescriptor *pic,
- mitkIpPicDescriptor *pic_old,
- int *permutations_vector )
-
-{
- mitkIpPicDescriptor *pic_return;
- mitkIpUInt4_t size [_mitkIpPicNDIM];
- mitkIpUInt4_t r_size[_mitkIpPicNDIM];
- mitkIpUInt4_t index [_mitkIpPicNDIM];
- mitkIpUInt4_t **r_index;
- mitkIpUInt4_t i;
- mitkIpUInt4_t r_offset;
- int default_perm = 0;
-
-
- /*
- **
- */
- if( !pic ) return( NULL );
- if ( pic->dim < 1 || pic->dim > _mitkIpPicNDIM)
- return (NULL);
-
-
- /*
- ** create and initialize help vectors
- */
-
- /*
- ** permutations_vector == NULL
- ** default permutation (1234 -> 4321)
- */
- if( permutations_vector == NULL )
- {
- permutations_vector = (int *) malloc(
- pic->dim * sizeof( int ));
- if (!permutations_vector)
- return (0);
-
- for(i=0; i<pic->dim; i++ )
- permutations_vector[i] = pic->dim - i;
- }
- else
- {
-
- int tmp[8];
- int error = 0;
- for (i = 0; i < pic->dim; i++)
- tmp[i] = 0;
- for (i = 0; error == 0 && i < pic->dim; i++)
- {
- if( permutations_vector[i] > 0 )
- tmp[permutations_vector[i] - 1]++;
- else
- error = 1;
- }
- for (i = 0; error == 0 && i < pic->dim; i++)
- if (tmp[i] != 1)
- error = 1;
- if (error == 1)
- return (0);
- }
-
-
- /*
- ** take over image header structure and allocate memory
- */
- mitkIpPicFree( pic_old );
- pic_return = mitkIpPicCopyHeader( pic, NULL );
- if (!pic_return)
- {
- if (default_perm)
- free ((void *) permutations_vector);
- return (0);
- }
-
- pic_return->data = malloc( _mitkIpPicSize(pic_return) );
- if (!pic_return->data)
- {
- if (default_perm)
- free ((void *) permutations_vector);
- mitkIpPicFree (pic_return);
- return (0);
- }
-
-
-
- /*
- ** fill new dimension to pic_return
- */
- for( i=0; i<pic->dim; i++ )
- pic_return->n[i] = pic->n[ ( permutations_vector[i] - 1 ) ];
-
- /*
- ** fill size vectors for multiplication
- */
- for( i=0; i<_mitkIpPicNDIM; i++)
- {
- size[i] = 0;
- r_size[i] = 0;
- }
- r_size[0] = 1;
- size[0] = 1;
- for( i=1; i<pic->dim; i++ )
- {
- size[i] = size[i-1] * pic->n[i-1];
- r_size[i] = r_size[i-1] * pic_return->n[i-1];
- }
-
-
- /*
- ** index vectors
- */
- r_index = (mitkIpUInt4_t **) malloc( _mitkIpPicNDIM * sizeof( mitkIpUInt4_t * ) );
- for( i=0; i<_mitkIpPicNDIM; i++)
- r_index[i] = &( index[i] );
- for( i=0; i<pic->dim; i++ )
- r_index[i] = &( index[ ( permutations_vector[i] - 1 ) ]);
-
-
- /*
- ** Makro for all for-loops and switches for all dimensions (1-8)
- ** FOR ALL: dimensions, indizes, data types
- */
- mitkIpPicFORALL_4( mitkIpFuncFORALL, pic, pic_return, index, r_offset,
- for( r_offset = *(r_index[0]), i=1; i<pic->dim; i++ )
- r_offset += *(r_index[i]) * r_size[i];
- )
-
-
-
-
- free( (void *) r_index );
- if (default_perm) free ((void *) permutations_vector);
-
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_return, pic);
-
- return( pic_return );
-}
-#endif
diff --git a/Utilities/IpFunc/Var.c b/Utilities/IpFunc/Var.c
deleted file mode 100644
index 229ccd7089..0000000000
--- a/Utilities/IpFunc/Var.c
+++ /dev/null
@@ -1,116 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the variance of all greyvalues
- * in an image
- */
-
-/** this function calculates the variance of all greyvalues
- * in an image
- *
- * @param pic pointer to the image
- * @param &max result variable: mean greyvalue
- *
- * @return mitkIpFuncERROR - if an error occured
- * @return mitkIpFuncOK - if no error occures
- *
- * AUTHOR & DATE
- */
-
-/* include-files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncVar ( mitkIpPicDescriptor *pic );
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of extreme value macro */
-
-#define MEAN_2( type, pic, mean, mean_2 ) \
- { \
- mitkIpUInt4_t i, no_elem; \
- \
- mean_2 = 0.; \
- \
- no_elem = _mitkIpPicElements ( pic ); \
- for ( i = 0; i < no_elem; i++ ) \
- { \
- mean_2 = ( ( ( type * ) pic->data ) [i] - mean ) * \
- ( ( ( type * ) pic->data ) [i] - mean ) + \
- mean_2; \
- } \
- }
-
-/* ========================================================== */
-/*
-** function picVar : calculates the mean value (mean)
-** of an image (pic)
-*/
-/* ========================================================== */
-
-mitkIpFloat8_t mitkIpFuncVar ( mitkIpPicDescriptor *pic )
-{
-
- mitkIpFloat8_t var;
- mitkIpFloat8_t mean;
- mitkIpFloat8_t mean_2;
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( _mitkIpPicElements ( pic ) == 1 )
- var = 0;
- else
- {
- /* calculate mean value */
-
- mean = mitkIpFuncMean ( pic );
-
- mitkIpPicFORALL_2( MEAN_2, pic, mean, mean_2 );
-
- var = mean_2 / ( mitkIpFloat8_t ) ( _mitkIpPicElements ( pic ) - 1 );
- }
-
- return( var );
-}
-#endif
diff --git a/Utilities/IpFunc/VarC.c b/Utilities/IpFunc/VarC.c
deleted file mode 100644
index 959bd1c19c..0000000000
--- a/Utilities/IpFunc/VarC.c
+++ /dev/null
@@ -1,217 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the variance of all greyvalues which are in
- * a circle
- */
-
-/** @brief calculates the variance of all greyvalues which are in
- * a circle
- *
- * @param pic_old pointer to the original image
- * @param center pointer to an array that contains the coordinates of the center
- * of the circle
- * @param radius radius of the circle
- *
- * @return variance of the greyvalues which are included by the circle
- *
- * AUTHOR & DATE
- */
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncVarC ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *center,
- mitkIpUInt4_t radius );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of macros */
-
-
-#define VAR( type, pic, beg, end, size, center, radius ) \
-{ \
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* used to calculate offset of image pixels */ \
- mitkIpUInt4_t dist[_mitkIpPicNDIM]; /* used to calculate offset of image pixels */ \
- \
- for ( ind[7] = beg[7] ; ind[7] < end[7]; ind[7]++ ) \
- { \
- dist[7] = ( ind[7] - center[7] ) * ( ind[7] - center[7] ); \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = beg[6] ; ind[6] < end[6]; ind[6]++ ) \
- { \
- dist[6] = ( ind[6] - center[6] ) * ( ind[6] - center[6] ) + dist[7]; \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = beg[5] ; ind[5] < end[5]; ind[5]++ ) \
- { \
- dist[5] = ( ind[5] - center[5] ) * ( ind[5] - center[5] ) + dist[6]; \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = beg[4] ; ind[4] < end[4]; ind[4]++ ) \
- { \
- dist[4] = ( ind[4] - center[4] ) * ( ind[4] - center[4] ) + dist[5]; \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = beg[3] ; ind[3] < end[3]; ind[3]++ ) \
- { \
- dist[3] = ( ind[3] - center[3] ) * ( ind[3] - center[3] ) + dist[4]; \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = beg[2] ; ind[2] < end[2]; ind[2]++ ) \
- { \
- dist[2] = ( ind[2] - center[2] ) * ( ind[2] - center[2] ) + dist[3]; \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = beg[1] ; ind[1] < end[1]; ind[1]++ ) \
- { \
- dist[1] = ( ind[1] - center[1] ) * ( ind[1] - center[1] ) +dist[2];\
- off[1] = size[1] * ind[1] + off[2]; \
- off[0] = off[1]+beg[0]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- dist[0] = ( ind[0] - center[0] ) * ( ind[0] - center[0] )+dist[1];\
- if ( sqrt ( ( mitkIpFloat8_t ) dist[0] ) <= radius ) \
- { \
- mean2 = ( ( mitkIpFloat8_t )(( type * )pic->data )[off[0]] - mean ) *\
- ( ( mitkIpFloat8_t )(( type * )pic->data )[off[0]] - mean ) +\
- mean2; \
- count++; \
- } \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-
-
-/* ------------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------------ */
-
-mitkIpFloat8_t mitkIpFuncVarC ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *center,
- mitkIpUInt4_t radius )
-{
- mitkIpInt4_t help;
- mitkIpUInt4_t i; /* loop index */
- mitkIpFloat8_t mean;
- mitkIpFloat8_t mean2;
- mitkIpFloat8_t var;
- mitkIpUInt4_t count;
- mitkIpUInt4_t end[_mitkIpPicNDIM]; /* end of window */
- mitkIpUInt4_t begin[_mitkIpPicNDIM]; /* beginning of window */
- mitkIpUInt4_t centr[_mitkIpPicNDIM]; /* beginning of window */
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( radius <= 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- for ( i = 0; i < pic_old->dim; i++ )
- {
- help = center[i] - radius;
- if ( help < 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- else begin[i] = help;
-
- help = center[i] + radius;
- if ( (mitkIpUInt4_t) help > pic_old->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- else end[i] = help + 1;
-
- centr[i] = center[i];
- }
-
- /* initialize vectors and variables */
-
- size[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
- size[pic_old->dim] = 0;
-
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- {
- centr[i] = 0;
- begin[i] = 0;
- end[i] = 1;
- }
-
- /* allocate image structure */
-
- mean = mitkIpFuncMeanC ( pic_old, centr, radius );
- mean2 = 0;
- count = 0;
-
- mitkIpPicFORALL_5 ( VAR, pic_old, begin, end, size, centr, radius );
-
- if ( count == 1 )
- var = 0;
- else
- var = mean2 / ( count - 1 );
-
- return ( var );
-}
-
-#endif
diff --git a/Utilities/IpFunc/VarR.c b/Utilities/IpFunc/VarR.c
deleted file mode 100644
index 796aa71542..0000000000
--- a/Utilities/IpFunc/VarR.c
+++ /dev/null
@@ -1,88 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the variance of all greyvalues included by a rectangle
- */
-
-/** @brief calculates the variance of all greyvalues included by a rectangle
- *
- * The rectangle is described by a vector with the coordinates of the
- * upper left corner and a vector of its length in each direction
- *
- * @param pic_old pointer to original image
- * @param begin vector with the beginning coordinates of the window
- * @param length vector with the length of the window in each direction
- *
- * @return variance in window
- *
- * AUTHOR & DATE
- */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncVarR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-mitkIpFloat8_t mitkIpFuncVarR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length )
-{
-
- mitkIpFloat8_t var; /* variance */
- mitkIpPicDescriptor *pic_help;
-
- pic_help = mitkIpFuncWindow ( pic_old, begin, length );
-
- var = mitkIpFuncVar ( pic_help );
-
- mitkIpPicFree ( pic_help );
-
- return ( var );
-}
-#endif
-
diff --git a/Utilities/IpFunc/VarROI.c b/Utilities/IpFunc/VarROI.c
deleted file mode 100644
index 2e7b087d3c..0000000000
--- a/Utilities/IpFunc/VarROI.c
+++ /dev/null
@@ -1,263 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function calculates the variance of all pixels inside of a polygon
- */
-
-/** @brief calculates the variance of all pixels inside of a polygon
- *
- * The polygon is described by a sequence of points
- *
- * @param pic_old pointer to original image
- * @param pol_x vector with the x-coordinates of the points which form
- * form the roi
- * @param pol_y vector with the y-coordinates of the points which form
- * form the roi
- * @param no_pts number of points used to describe ROI
- *
- * REMARKS
- * this function could just be used for 2D images
- *
- * @return variance of all greyvalues in ROI
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpFloat8_t mitkIpFuncVarROI ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncVarROI\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-/*definition of macros */
-
-#define MAX( x, y ) ( x > y ) ? x : y
-#define MIN( x, y ) ( x < y ) ? x : y
-#define ROI( type, pic, pic_help, sum, sum2, count ) \
-{ \
- mitkIpBool_t in; \
- mitkIpUInt4_t i, j; \
- mitkIpUInt4_t offset; \
- \
- for ( i = min_y; i <= max_y; i++ ) \
- { \
- in = mitkIpFalse; \
- offset = i * pic->n[0] + min_x; \
- for ( j = min_x; j <= max_x; j++ ) \
- { \
- if ( (( mitkIpUInt1_t * )pic_help->data )[offset] && ( !in ) ) \
- in = mitkIpTrue; \
- else if ( (( mitkIpUInt1_t * )pic_help->data )[offset] && ( in ) ) \
- { \
- in = mitkIpFalse; \
- sum2 = sum2 + ((( type * )pic->data )[offset] - sum) *\
- ((( type * )pic->data )[offset] - sum); \
- count++; \
- } \
- \
- if ( in ) \
- { \
- sum2 = sum2 + ((( type * )pic->data )[offset] - sum) *\
- ((( type * )pic->data )[offset] - sum) +\
- count++; \
- } \
- offset++; \
- } \
- } \
-}
-
-/*
-** mitkIpFuncMeanROI
-*/
-
-mitkIpFloat8_t mitkIpFuncVarROI ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts )
-{
- mitkIpFloat8_t var; /* variance of greyvalues in ROI */
- mitkIpFloat8_t sum=0; /* sum of greyvalues in ROI */
- mitkIpFloat8_t sum2=0; /* sum of squared greyvalues in ROI*/
- mitkIpFloat8_t *a, *b; /* Gerade y = ax+b */
- mitkIpPicDescriptor *pic_help; /* contains edge of ROI */
- mitkIpUInt4_t min_x, max_x; /* min, max x-coordinate of ROI */
- mitkIpUInt4_t min_y, max_y; /* min, max y-coordinate of ROI */
- mitkIpUInt4_t i; /* loop variable */
- mitkIpUInt4_t count=0; /* number of pixels in ROI */
- mitkIpFloat8_t diff; /* difference between two points */
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( pic_old->dim > 2 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* calculate min. and max. coordiantes of ROI */
-
- min_x = pol_x[0];
- min_y = pol_y[0];
- max_x = pol_x[0];
- max_y = pol_y[0];
- for ( i = 1; i < no_pts; i++ )
- {
- min_x = MIN ( min_x, pol_x[i] );
- min_y = MIN ( min_y, pol_y[i] );
- max_x = MAX ( max_x, pol_x[i] );
- max_y = MAX ( max_y, pol_y[i] );
- }
-
- /* check whether ROI is in image */
-
- /* Expression is always false.
- if ( min_x < 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- */
-
- if ( max_x > pic_old->n[0] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* Expression is always false.
- if ( min_y < 0 )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- */
-
- if ( max_y > pic_old->n[1] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* allocate memory for a and b */
-
- a = ( mitkIpFloat8_t * ) malloc ( no_pts * sizeof ( mitkIpFloat8_t ) );
- if ( !a )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- b = ( mitkIpFloat8_t * ) malloc ( no_pts * sizeof ( mitkIpFloat8_t ) );
- if ( !b )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* Geraden zwischen zwei benachbarten Punkten berechnen */
-
- for ( i = 0; i < no_pts-1; i++ )
- {
- diff = ( mitkIpFloat8_t ) pol_x[i+1] - ( mitkIpFloat8_t ) pol_x[i];
- if ( diff )
- {
- a[i] = ( ( mitkIpFloat8_t ) pol_y[i+1] - ( mitkIpFloat8_t ) pol_y[i] ) / diff;
- b[i] = ( ( mitkIpFloat8_t ) pol_y[i] - a[i] * ( mitkIpFloat8_t )pol_x[i] );
- }
- else
- {
- b[i] = 0.;
- a[i] = 0.;
- }
- }
- diff = ( mitkIpFloat8_t ) pol_x[no_pts-1] - ( mitkIpFloat8_t ) pol_x[0];
- if ( diff )
- {
- a[no_pts-1] = ( ( mitkIpFloat8_t ) pol_y[no_pts-1] - ( mitkIpFloat8_t ) pol_y[0] ) / diff;
- b[no_pts-1] = ( pol_y[no_pts-1] - a[no_pts-1] * pol_x[no_pts-1] );
- }
- else
- {
- b[no_pts-1] = 0.;
- a[no_pts-1] = 0.;
- }
-
- /* Function to calculate mean */
-
- sum = mitkIpFuncMeanROI ( pic_old, pol_x, pol_y, no_pts );
-
- /* draw polygon to image */
-
- pic_help = _mitkIpFuncDrawPoly ( pic_old, pol_x, pol_y, no_pts, a, b );
- if ( !pic_help )
- {
- free ( a );
- free ( b );
- return ( mitkIpFuncERROR );
- }
-
- mitkIpPicFORALL_4 ( ROI, pic_old, pic_help, sum, sum2, count );
-
- if ( count == 1 )
- var = 0;
- else
- var = sum2 / ( count - 1 );
-
- free ( a );
- free ( b );
- mitkIpPicFree ( pic_help );
-
- return ( var );
-
-}
-
-#endif
-
diff --git a/Utilities/IpFunc/Window.c b/Utilities/IpFunc/Window.c
deleted file mode 100644
index 7266665371..0000000000
--- a/Utilities/IpFunc/Window.c
+++ /dev/null
@@ -1,204 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function copies a rectangular section of an image to a new one
- */
-
-/** @brief copies a rectangular section of an image to a new one
- *
- * @param pic_old pointer to the original image
- * @param begin pointer to an array that contains the beginning of the
- * section in each direction
- * @param length pointer to an array that contains the length of the section
- * in each direction
- *
- * @return pointer to the iamge with the section of the iamge
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncWindow ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-/* definition of macros */
-
-
-#define WIND( type, pic, beg, end, size ) \
-{ \
- mitkIpUInt4_t offset; /* offset of pixels in pic_new */ \
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* used to calculate offset of image pixels */ \
- \
- offset = 0; \
- for ( ind[7] = beg[7] ; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = beg[6] ; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = beg[5] ; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = beg[4] ; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = beg[3] ; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = beg[2] ; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = beg[1] ; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = size[1] * ind[1] + off[2]; \
- off[0] = off[1]+beg[0]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- (( type * ) pic_new->data )[offset] = \
- (( type * ) pic->data ) [off[0]]; \
- off[0]++; \
- offset++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-
-
-/* ------------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *mitkIpFuncWindow ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t end[_mitkIpPicNDIM]; /* end of image */
- mitkIpUInt4_t beg[_mitkIpPicNDIM]; /* end of image */
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- for ( i = 0; i < pic_old->dim; i++ )
- {
- if ( begin[i] < 0 || begin[i] > pic_old->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- beg[i] = begin[i];
- end[i] = begin[i] + length[i];
- if ( length[i] < 0 || end[i] > pic_old->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
-
- /* initialize vectors and variables */
-
- size[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
- size[pic_old->dim] = 0;
-
-
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- {
- beg[i] = 0;
- end[i] = 1;
- }
-
- /* allocate image structure */
-
- pic_new = mitkIpPicNew ( );
-
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- pic_new->dim = pic_old->dim;
- pic_new->type = pic_old->type;
- pic_new->bpe = pic_old->bpe;
- for ( i = 0; i < pic_new->dim; i++ )
- pic_new->n[i] = length[i];
- pic_new->data = malloc ( _mitkIpPicSize ( pic_new ) );
- if ( pic_new->data == NULL )
- {
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- mitkIpPicFORALL_3 ( WIND, pic_old, beg, end, size );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
- return ( pic_new );
-}
-
-#endif
-
diff --git a/Utilities/IpFunc/WindowR.c b/Utilities/IpFunc/WindowR.c
deleted file mode 100644
index 6857acca5c..0000000000
--- a/Utilities/IpFunc/WindowR.c
+++ /dev/null
@@ -1,204 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function copies an image to a specified position in another image
- */
-
-/** @brief copies an image to a specified position in another image
- *
- * @param pic_1 pointer to the image into which @a pic_2 should be inserted
- * @param pic_2 pointer to image that should be inserted
- * @param begin pointer to an array that contains the position at which
- * @a pic_2 ist inserted to @a pic_1
- *
- * @return pointer to the new iamge
- *
- * AUTHOR & DATE
- */
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncWindowR ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpUInt4_t *begin,
- mitkIpFuncFlagI_t keep );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-
-
-/* definition of macros */
-
-
-#define WINDR( type, pic, beg, end, size ) \
-{ \
- mitkIpUInt4_t offset; /* offset of pixels in pic_new */ \
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* used to calculate offset of image pixels */ \
- \
- offset = 0; \
- for ( ind[7] = beg[7] ; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = beg[6] ; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = beg[5] ; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = beg[4] ; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = beg[3] ; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = beg[2] ; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = beg[1] ; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = size[1] * ind[1] + off[2]; \
- off[0] = off[1]+beg[0]; \
- for ( ind[0] = beg[0]; ind[0] < end[0]; ind[0]++ ) \
- { \
- (( type * ) pic_new->data )[off[0]] = \
- (( type * ) pic->data ) [offset]; \
- off[0]++; \
- offset++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
-}
-
-
-/* ------------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *mitkIpFuncWindowR ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpUInt4_t *begin,
- mitkIpFuncFlagI_t keep )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
- mitkIpInt4_t i; /* loop index */
- mitkIpUInt4_t end[_mitkIpPicNDIM]; /* end of image */
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_1 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
- if ( _mitkIpFuncError ( pic_2 ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- if ( pic_1->dim != pic_2->dim )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDIM_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( pic_1->type != pic_2->type )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncTYPE_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( pic_1->bpe != pic_2->bpe )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncSIZE_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- for ( i = 0; i < pic_1->dim; i++ )
- {
- if ( begin[i] < 0 || begin[i] > pic_1->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- end[i] = begin[i] + pic_2->n[i];
- if ( end[i] > pic_1->n[i] )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- }
-
- /* initialize vectors and variables */
-
- size[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_1->n[i-1];
- size[pic_1->dim] = 0;
-
-
- for ( i = pic_1->dim; i < _mitkIpPicNDIM; i++ )
- {
- begin[i] = 0;
- end[i] = 1;
- }
-
- /* allocate image structure */
-
- if ( keep == mitkIpFuncKeep )
- pic_new = mitkIpPicClone ( pic_1 );
- else
- pic_new = pic_1;
-
- mitkIpPicFORALL_3 ( WINDR, pic_2, begin, end, size );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_1);
-
- return ( pic_new );
-}
-#endif
-
diff --git a/Utilities/IpFunc/Xchange.c b/Utilities/IpFunc/Xchange.c
deleted file mode 100644
index 954529c7ee..0000000000
--- a/Utilities/IpFunc/Xchange.c
+++ /dev/null
@@ -1,116 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * exchange of two image buffers
- */
-
-/** exchange of two image buffers
- *
- * @param pic1 pointer to pic descriptor
- * @param pic2 pointer to pic descriptor
- *
- *
- * @author Ulrike Guennel @date 07.7.1995
- *
- * $Log$
- * Revision 1.3 2003/08/21 08:44:44 tobiask
- * Removed warnings.
- *
- * Revision 1.2 2000/05/24 15:29:43 tobiask
- * Changed the installation paths of the package.
- *
- * Revision 1.4 2000/05/04 12:52:11 ivo
- * inserted BSD style license
- *
- * Revision 1.3 2000/04/04 11:57:10 ivo
- * no message
- *
- * Revision 1.2 2000/02/18 14:58:09 ivo
- * Tags are now copied into newly allocated images.
- * Bugs fixed in mitkIpFuncFrame, mitkIpFuncRegGrow, _mitkIpFuncBorderX and mitkIpFuncHitMiss.
- *
- * Revision 1.1.1.1 1998/07/16 12:04:50 antje
- * initial import
- *
- * Revision 1.1 1995/03/07 17:01:02 uli
- * Initial revision
- *
- */
-
-
- /*
-** ipFunc includefiles
-*/
-#include "mitkIpFuncP.h"
-
-void mitkIpFuncXchange( mitkIpPicDescriptor **pic1,
- mitkIpPicDescriptor **pic2 );
-
-#ifndef DOXYGEN_IGNORE
-
-#ifndef lint
- static char *what = { "@(#)mitkIpFuncXchange\tGerman Cancer Research Center (DKFZ) $Revision$ "__DATE__ };
-#endif
-
-
-/*
-** private macros
-*/
-
-
-/*
-** the action starts here
-*/
-void mitkIpFuncXchange( mitkIpPicDescriptor **pic1,
- mitkIpPicDescriptor **pic2 )
-
-{
-
- mitkIpPicDescriptor *tmp_pic;
-
- tmp_pic = *pic1;
- *pic1 = *pic2;
- *pic2 = tmp_pic;
-
- return;
-}
-#endif
-
diff --git a/Utilities/IpFunc/ZeroCr.c b/Utilities/IpFunc/ZeroCr.c
deleted file mode 100644
index 16cbe59f43..0000000000
--- a/Utilities/IpFunc/ZeroCr.c
+++ /dev/null
@@ -1,201 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/**@file
- * this function detects zero-crossings
- */
-
-/** @brief detects zero-crossings
- *
- * @param pic_old pointer to the image that should be transformed
- *
- * @return pointer to the transformed image
- *
- * AUTHOR & DATE
- */
-
-/* include-Files */
-
-#include "mitkIpFuncP.h"
-
-mitkIpPicDescriptor *mitkIpFuncZeroCr ( mitkIpPicDescriptor *pic_old ) ;
-
-#ifndef DOXYGEN_IGNORE
-
-/* definition of macros */
-
-#define ZERO( type, pic, size, off, n ) \
-{ \
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; \
- mitkIpUInt4_t i, j; \
- mitkIpInt4_t offset; \
- type help1, help2, help3, help; \
- \
- /* test whether there is a zero crossing in each direction */ \
- \
- for ( ind[7] = 1; ind[7] < n[7]; ind[7]++ ) \
- for ( ind[6] = 1; ind[6] < n[6]; ind[6]++ ) \
- for ( ind[5] = 1; ind[5] < n[5]; ind[5]++ ) \
- for ( ind[4] = 1; ind[4] < n[4]; ind[4]++ ) \
- for ( ind[3] = 1; ind[3] < n[3]; ind[3]++ ) \
- for ( ind[2] = 1; ind[2] < n[2]; ind[2]++ ) \
- for ( ind[1] = 1; ind[1] < n[1]; ind[1]++ ) \
- for ( ind[0] = 1; ind[0] < n[0]; ind[0]++ ) \
- { \
- offset = 0; \
- for ( i = 0; i < pic->dim; i++ ) \
- offset = offset + size[i] * ind[i]; \
- \
- i = 0; \
- help = (( type * )pic_new->data )[offset]; \
- help2 = ((type *)pic->data)[offset]; \
- while ( help == 0 && i < pic->dim ) \
- { \
- j = 2 * i; \
- help1 = ((type *)pic->data)[offset + off[j]];\
- help3 = ((type *)pic->data)[offset+off[j+1]];\
- \
- if ( help1 < 0 && help3 > 0 ) \
- { \
- if ( help2 > 0 && (help1 + help2) <=0 ) \
- help = ( type ) 1; \
- else if ( help2<=0 && (help2+help3) >0 )\
- help = ( type ) 1; \
- } \
- else if ( help1 > 0 && help3 < 0 ) \
- { \
- if ( help2 >= 0 && (help2 + help3) <0 ) \
- help = ( type ) 1; \
- else if ( help2<0 && (help1+help2) >=0 )\
- help = ( type ) 1; \
- } \
- i++; \
- } \
- (( type * )pic_new->data )[offset] = help; \
- \
- } \
-}
-
-
-
-/* ------------------------------------------------------------------- */
-/*
-*/
-/* ------------------------------------------------------------------- */
-
-mitkIpPicDescriptor *mitkIpFuncZeroCr ( mitkIpPicDescriptor *pic_old )
-{
-
- mitkIpPicDescriptor *pic_new; /* convoluted image */
- mitkIpUInt4_t i, j; /* loopindex */
- mitkIpInt4_t size[_mitkIpPicNDIM];
- mitkIpUInt4_t n[_mitkIpPicNDIM];
- mitkIpInt4_t *off_vekt; /* offset vector */
-
- /* check image data */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- /* initialisation of vectors */
-
- size[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_old->n[i-1];
-
- for ( i = 0; i < pic_old->dim; i++ )
- n[i] = pic_old->n[i] - 1;
-
- for ( i = pic_old->dim; i < _mitkIpPicNDIM; i++ )
- n[i] = 2;
-
- /* allocate and calculate offset vector */
-
- off_vekt = malloc ( 2 * pic_old->dim * sizeof ( mitkIpInt4_t ) );
- if ( off_vekt == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- for ( i = 0; i < pic_old->dim; i++ )
- {
- j = 2 * i;
- off_vekt[j] = - size[i];
- off_vekt[j+1] = size[i];
- }
-
-
- /* create a new picture, copy the header, allocate memory */
-
- pic_new = mitkIpPicCopyHeader ( pic_old, 0 );
- if ( pic_new == NULL )
- {
- free ( off_vekt );
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- free ( off_vekt );
- return ( mitkIpFuncERROR );
- }
- pic_new->data = calloc ( _mitkIpPicElements ( pic_new ), pic_new->bpe/8 );
- if ( pic_new->data == NULL )
- {
- free ( off_vekt );
- mitkIpPicFree ( pic_new );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- free ( off_vekt );
- return ( mitkIpFuncERROR );
- }
-
-
- /* macro to convolute an image (for all data types) */
-
- mitkIpPicFORALL_3 ( ZERO, pic_old, size, off_vekt, n );
-
- free ( off_vekt );
-
- /* Copy Tags */
-
- mitkIpFuncCopyTags(pic_new, pic_old);
-
-
-
-
- return pic_new;
-}
-#endif
diff --git a/Utilities/IpFunc/_BorderX.c b/Utilities/IpFunc/_BorderX.c
deleted file mode 100644
index a797a3f39f..0000000000
--- a/Utilities/IpFunc/_BorderX.c
+++ /dev/null
@@ -1,258 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
- * mitkIpFuncBorder
- *---------------------------------------------------------------------
- * DESCRIPTION
- *
- * FUNCTION DECLARATION
- *
- * PARAMETERS
- *
- * RETURN VALUES
- *
- * AUTHOR & DATE
- * Antje Schroeder 27.07.95
- *
- * UPDATES
- * $Log$
- * Revision 1.4 2000/08/02 20:09:05 tobiask
- * Made some corrections in _BorderX.c
- *
- * Revision 1.3 2000/07/24 13:06:26 ivo
- * June 26, 2000
- * iw - function mitkIpFuncSetTag added.
- *
- * July 8, 2000
- * iw - Visual C++ 6.0 SP3 compiler crashes at "static char *what..." lines.
- * Workaround: "lint" defined in project files for all configurations.
- *
- * July 11, 2000
- * iw - ipFunc.exe Scale crashed, if last parameter was missing. Corrected.
- *
- * Revision 1.2 2000/05/24 15:29:44 tobiask
- * Changed the installation paths of the package.
- *
- * Revision 1.3 2000/05/04 12:52:11 ivo
- * inserted BSD style license
- *
- * Revision 1.2 2000/02/18 14:58:09 ivo
- * Tags are now copied into newly allocated images.
- * Bugs fixed in mitkIpFuncFrame, mitkIpFuncRegGrow, _mitkIpFuncBorderX and mitkIpFuncHitMiss.
- *
- * Revision 1.1.1.1 2000/02/18 15:40:34 ivo
- * the dimension sizes n[i] that are not used must be set to zero,
- * otherwise the macro BORDER may crash. This is now done in the else-
- * part of "if ( pic_new == NULL )" (first two rows).
- *
- *---------------------------------------------------------------------
- */
-#ifndef lint
- static char *what = { "@(#)????????\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-/* definition of macros */
-
-
-#define BORDER( type, pic, size, value ) \
-{ \
- mitkIpUInt4_t i; /* loop index */ \
- mitkIpUInt4_t anf[_mitkIpPicNDIM]; /* */ \
- mitkIpUInt4_t ind[_mitkIpPicNDIM]; /* loop index vector */ \
- mitkIpUInt4_t off[_mitkIpPicNDIM]; /* used to calculate offset of image pixels */ \
- \
- \
- for ( i = 0; i < pic->dim; i++ ) \
- { \
- anf[i] = 0; \
- end[i] = pic->n[i]; \
- } \
- for ( i = pic->dim; i < _mitkIpPicNDIM; i++ ) \
- { \
- anf[i] = 0; \
- end[i] = 1; \
- pic->n[i] = 1; \
- } \
- for ( i = 0; i < pic->dim; i++ ) \
- { \
- anf[i] = pic->n[i] - edge[i]; \
- end[i] = edge[i]; \
- for ( ind[7] = 0; ind[7] < end[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = 0; ind[6] < end[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = 0; ind[5] < end[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = 0; ind[4] < end[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = 0; ind[3] < end[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = 0; ind[2] < end[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = 0; ind[1] < end[1]; ind[1]++ ) \
- { \
- off[1] = size[1] * ind[1] + off[2]; \
- for ( ind[0] = 0; ind[0] < end[0]; ind[0]++ ) \
- { \
- (( type * ) pic_new->data )[off[1]] = ( type ) value; \
- off[1]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- for ( ind[7] = anf[7]; ind[7] < pic->n[7]; ind[7]++ ) \
- { \
- off[7] = size[7] * ind[7]; \
- for ( ind[6] = anf[6]; ind[6] < pic->n[6]; ind[6]++ ) \
- { \
- off[6] = size[6] * ind[6] + off[7]; \
- for ( ind[5] = anf[5]; ind[5] < pic->n[5]; ind[5]++ ) \
- { \
- off[5] = size[5] * ind[5] + off[6]; \
- for ( ind[4] = anf[4]; ind[4] < pic->n[4]; ind[4]++ ) \
- { \
- off[4] = size[4] * ind[4] + off[5]; \
- for ( ind[3] = anf[3]; ind[3] < pic->n[3]; ind[3]++ ) \
- { \
- off[3] = size[3] * ind[3] + off[4]; \
- for ( ind[2] = anf[2]; ind[2] < pic->n[2]; ind[2]++ ) \
- { \
- off[2] = size[2] * ind[2] + off[3]; \
- for ( ind[1] = anf[1]; ind[1] < pic->n[1]; ind[1]++ ) \
- { \
- off[1] = size[1] * ind[1] + off[2]; \
- off[0] = off[1] + anf[0]; \
- for ( ind[0] = anf[0]; ind[0] < pic->n[0]; ind[0]++ ) \
- { \
- (( type * ) pic_new->data )[off[0]] = ( type ) value; \
- off[0]++; \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- } \
- end[i] = pic->n[i]; \
- anf[i] = 0; \
- } \
-}
-
-/* ------------------------------------------------------------------------------ */
-/*
-*/
-/* ------------------------------------------------------------------------------ */
-
-mitkIpPicDescriptor *_mitkIpFuncBorderX ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *edge,
- mitkIpFloat8_t value )
-{
- mitkIpPicDescriptor *pic_new; /* pointer to transformed image */
- mitkIpUInt4_t i; /* loop index */
- mitkIpUInt4_t end[_mitkIpPicNDIM]; /* end of image */
- mitkIpUInt4_t size[_mitkIpPicNDIM]; /* */
- mitkIpFloat8_t max_gv, min_gv;
-
- /* check whether data are correct */
-
- if ( _mitkIpFuncError ( pic_old ) != mitkIpFuncOK ) return ( mitkIpFuncERROR );
-
- pic_new = mitkIpPicCopyHeader ( pic_old, NULL );
- if ( pic_new == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
- else
- {
- for ( i = pic_new->dim; i < _mitkIpPicNDIM; i++ )
- pic_new->n[i] = 0;
-
- for ( i = 0; i < pic_old->dim; i++ )
- pic_new->n[i] = pic_old->n[i] + 2 * edge[i];
- pic_new->data = calloc ( _mitkIpPicElements ( pic_new ), pic_new->bpe/8 );
- if ( pic_new->data == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- mitkIpPicFree ( pic_new );
- return ( mitkIpFuncERROR );
- }
- }
-
-
- if ( _mitkIpFuncExtT ( pic_old->type, pic_old->bpe, &min_gv, &max_gv ) != mitkIpFuncOK )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
- if ( ( value > max_gv ) || ( value < min_gv ) )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncDATA_ERROR );
- return ( mitkIpFuncERROR );
- }
-
-
- /* initialize vectors and variables */
-
- size[0] = 1;
- for ( i = 1; i < _mitkIpPicNDIM; i++ )
- size[i] = size[i-1] * pic_new->n[i-1];
- size[pic_new->dim] = 0;
-
- mitkIpPicFORALL_2 ( BORDER, pic_new, size, value )
-
- return ( pic_new );
-}
diff --git a/Utilities/IpFunc/_DrawPoly.c b/Utilities/IpFunc/_DrawPoly.c
deleted file mode 100644
index dedc848416..0000000000
--- a/Utilities/IpFunc/_DrawPoly.c
+++ /dev/null
@@ -1,278 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
- *
- *---------------------------------------------------------------------
- * DESCRIPTION
- * this function draws the edge of an ROI to an image
- *
- * FUNCTION DECLARATION
- * mitkIpPicDescriptor *_mitkIpFuncDrawPoly( mitkIpPicDescriptor *pic_old,
- * mitkIpUInt4_t *pol_x,
- * mitkIpUInt4_t *pol_y,
- * mitkIpUInt4_t no_pts,
- * mitkIpFloat8_t *a,
- * mitkIpFloat8_t *b);
- *
- * PARAMETERS
- * pic_old - pointer to original image
- * pol_x - vector with the x-coordinates of the points which form
- * form the roi
- * pol_y - vector with the y-coordinates of the points which form
- * form the roi
- * no_pts - number of points used to describe ROI
- * a -
- * b -
- *
- * REMARKS
- * this function could just be used for 2D images
- *
- * RETURN VALUES
- * pic_help - image with roi
- *
- * AUTHOR & DATE
- * Antje Schroeder 08.11.95
- *
- * UPDATES
- * a short history of the file
- *
- *---------------------------------------------------------------------
- */
-#ifndef lint
- static char *what = { "@(#)_mitkIpFuncDrawPoly\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__ };
-#endif
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-
-/* -------------------------------------------------------------------- */
-
-/*
-** mitkIpFuncDrawPoly
-*/
-
-mitkIpPicDescriptor *_mitkIpFuncDrawPoly ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts,
- mitkIpFloat8_t *a,
- mitkIpFloat8_t *b )
-{
-
- mitkIpPicDescriptor *pic_help;
- mitkIpUInt4_t i, j;
- mitkIpUInt4_t y;
- mitkIpUInt4_t beg, end;
-
- /* allocate memory for pic help */
-
- pic_help = mitkIpPicCopyHeader ( pic_old, NULL );
- if ( pic_help == NULL )
- {
- _mitkIpFuncSetErrno ( mitkIpFuncPICNEW_ERROR );
- return ( mitkIpFuncERROR );
- }
- pic_help->type = mitkIpPicUInt;
- pic_help->bpe = 8;
- pic_help->data = calloc ( _mitkIpPicElements ( pic_help ), pic_help->bpe / 8 );
- if ( pic_help->data == NULL )
- {
- mitkIpPicFree ( pic_help );
- _mitkIpFuncSetErrno ( mitkIpFuncMALLOC_ERROR );
- return ( mitkIpFuncERROR );
- }
-
- /* draw polygon to pic_help */
-
- for ( i = 0; i < no_pts-1; i++ )
- {
- if ( pol_x[i] == pol_x[i+1] )
- {
- if ( pol_y[i] < pol_y[i+1] )
- {
- beg = pol_y[i];
- end = pol_y[i+1];
- }
- else
- {
- end = pol_y[i];
- beg = pol_y[i+1];
- }
- for ( j = beg; j < end; j++ )
- (( mitkIpUInt1_t * )pic_help->data )[ j * pic_help->n[1] + pol_x[i]] = 100;
- }
- else
- {
- if ( pol_x[i] < pol_x[i+1] )
- {
- beg = pol_x[i];
- end = pol_x[i+1];
- }
- else
- {
- end = pol_x[i];
- beg = pol_x[i+1];
- }
- if ( pol_y[i] == pol_y[i+1] ) end = beg -1;
-
- for ( j = beg; j <= end; j++ )
- {
- y = a[i] * j + b[i];
- (( mitkIpUInt1_t * )pic_help->data )[ y * pic_help->n[1] + j ] = 100;
- }
- }
-
- if ( pol_y[i] == pol_y[i+1] )
- {
- if ( pol_x[i] < pol_x[i+1] )
- {
- beg = pol_x[i];
- end = pol_x[i+1];
- }
- else
- {
- end = pol_x[i];
- beg = pol_x[i+1];
- }
-
- for ( j = beg; j < end; j++ )
- (( mitkIpUInt1_t * )pic_help->data )[ j + pic_help->n[1] * pol_y[i]] = 100;
- }
- else
- {
- if ( pol_y[i] < pol_y[i+1] )
- {
- beg = pol_y[i];
- end = pol_y[i+1];
- }
- else
- {
- end = pol_y[i+1];
- beg = pol_y[i];
- }
- if ( pol_x[i] == pol_x[i+1] ) end = beg - 1;
-
- for ( j = beg; j <= end; j++ )
- {
- y = ( j - b[i] ) / a[i];
- (( mitkIpUInt1_t * )pic_help->data )[ j * pic_help->n[1] + y ] = 100;
- }
- }
- }
-
- if ( pol_x[no_pts-1] == pol_x[0] )
- {
- if ( pol_y[no_pts-1] < pol_y[0] )
- {
- beg = pol_y[no_pts-1];
- end = pol_y[0];
- }
- else
- {
- end = pol_y[no_pts-1];
- beg = pol_y[0];
- }
-
- for ( j = beg; j < end; j++ )
- (( mitkIpUInt1_t * )pic_help->data )[ j * pic_help->n[1] + pol_x[no_pts-1]] = 100;
- }
- else
- {
- if ( pol_x[no_pts-1] < pol_x[0] )
- {
- beg = pol_x[no_pts-1];
- end = pol_x[0];
- }
- else
- {
- end = pol_x[no_pts-1];
- beg = pol_x[0];
- }
- if ( pol_y[no_pts-1] == pol_y[0] ) end = beg -1;
-
- for ( j = beg; j <= end; j++ )
- {
- y = a[no_pts-1] * j + b[no_pts-1];
- (( mitkIpUInt1_t * )pic_help->data )[ y * pic_help->n[1] + j ] = 100;
- }
- }
-
- if ( pol_y[no_pts-1] == pol_y[0] )
- {
- if ( pol_x[no_pts-1] < pol_x[0] )
- {
- beg = pol_x[no_pts-1];
- end = pol_x[0];
- }
- else
- {
- end = pol_x[no_pts-1];
- beg = pol_x[0];
- }
-
- for ( j = beg; j < end; j++ )
- (( mitkIpUInt1_t * )pic_help->data )[ j + pic_help->n[1] * pol_y[no_pts-1]] = 100;
- }
- else
- {
- if ( pol_y[no_pts-1] < pol_y[0] )
- {
- beg = pol_y[no_pts-1];
- end = pol_y[0];
- }
- else
- {
- end = pol_y[no_pts-1];
- beg = pol_y[0];
- }
- if ( pol_x[no_pts-1] == pol_x[0] ) end = beg - 1;
-
- for ( j = beg; j <= end; j++ )
- {
- y = ( j - b[no_pts-1] ) / a[no_pts-1];
- (( mitkIpUInt1_t * )pic_help->data )[ j * pic_help->n[1] + y ] = 100;
- }
- }
-
- return ( pic_help );
-}
diff --git a/Utilities/IpFunc/files.cmake b/Utilities/IpFunc/files.cmake
deleted file mode 100644
index 72153f8bec..0000000000
--- a/Utilities/IpFunc/files.cmake
+++ /dev/null
@@ -1,105 +0,0 @@
-set(CPP_FILES
- AddC.c
- AddI.c
- AddSl.c
- And.c
- Border.c
- BorderX.c
- Box.c
- Box2d.c
- Box3d.c
- Canny.c
- Close.c
- CompressM.c
- Conv.c
- Convert.c
- CopyTags.c
- Curtosis.c
- CurtosisR.c
- Dila.c
- DivC.c
- DivI.c
- DrawPoly.c
- Equal.c
- Ero.c
- Error.c
- Exp.c
- ExtT.c
- ExtrC.c
- ExtrR.c
- ExtrROI.c
- Extrema.c
- FillArea.c
- Frame.c
- GaussF.c
- Grad.c
- Grav.c
- Hist.c
- Histo.c
- HitMiss.c
- HitMissI.c
- Inertia.c
- Inv.c
- LN.c
- Label.c
- Laplace.c
- LevWind.c
- Log.c
- MakePicName.c
- Malloc.c
- Mean.c
- MeanC.c
- MeanF.c
- MeanR.c
- MeanROI.c
- Median.c
- Morph.c
- MultC.c
- MultI.c
- Norm.c
- NormXY.c
- Not.c
- OpCl.c
- Open.c
- Or.c
- Pot.c
- Range.c
- Rank.c
- Refl.c
- RegGrow.c
- Roberts.c
- Rotate.c
- SDev.c
- SDevC.c
- SDevR.c
- SDevROI.c
- ScBl.c
- ScFact.c
- ScNN.c
- Scale.c
- SelInv.c
- SelMM.c
- Select.c
- SetErrno.c
- SetTag.c
- Shp.c
- Skewness.c
- SkewnessR.c
- Sobel.c
- Sqrt.c
- SubC.c
- SubI.c
- Thresh.c
- Transpose.c
- Var.c
- VarC.c
- VarR.c
- VarROI.c
- Window.c
- WindowR.c
- Xchange.c
- ZeroCr.c
- _BorderX.c
- _DrawPoly.c
- ipGetANew.c
-)
diff --git a/Utilities/IpFunc/gradient.h b/Utilities/IpFunc/gradient.h
deleted file mode 100644
index a4e348bfda..0000000000
--- a/Utilities/IpFunc/gradient.h
+++ /dev/null
@@ -1,97 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
- mitkIpInt2_t mask2[] =
- { 1, 1, 1, 0, 0, 0, -1, -1, -1,
- 1, 0, -1, 1, 0, -1, 1, 0, -1 };
-
- mitkIpInt2_t mask3[] =
- { 1, 1, 1, 0, 0, 0, -1, -1, -1,
- 1, 1, 1, 0, 0, 0, -1, -1, -1,
- 1, 1, 1, 0, 0, 0, -1, -1, -1,
-
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
-
- 1, 1, 1, 1, 1, 1, 1, 1, 1,
- 0, 0, 0, 0, 0, 0, 0, 0, 0,
- -1, -1, -1, -1, -1, -1, -1, -1, -1 };
-
-mitkIpInt2_t mask4[] =
- { 1, 1, 1, 0, 0, 0, -1, -1, -1,
- 1, 1, 1, 0, 0, 0, -1, -1, -1,
- 1, 1, 1, 0, 0, 0, -1, -1, -1,
- 1, 1, 1, 0, 0, 0, -1, -1, -1,
- 1, 1, 1, 0, 0, 0, -1, -1, -1,
- 1, 1, 1, 0, 0, 0, -1, -1, -1,
- 1, 1, 1, 0, 0, 0, -1, -1, -1,
- 1, 1, 1, 0, 0, 0, -1, -1, -1,
- 1, 1, 1, 0, 0, 0, -1, -1, -1,
-
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
- 1, 0, -1, 1, 0, -1, 1, 0, -1,
-
- 1, 1, 1, 1, 1, 1, 1, 1, 1,
- 0, 0, 0, 0, 0, 0, 0, 0, 0,
- -1, -1, -1, -1, -1, -1, -1, -1, -1,
- 1, 1, 1, 1, 1, 1, 1, 1, 1,
- 0, 0, 0, 0, 0, 0, 0, 0, 0,
- -1, -1, -1, -1, -1, -1, -1, -1, -1,
- 1, 1, 1, 1, 1, 1, 1, 1, 1,
- 0, 0, 0, 0, 0, 0, 0, 0, 0,
- -1, -1, -1, -1, -1, -1, -1, -1, -1,
-
- 1, 1, 1, 1, 1, 1, 1, 1, 1,
- 1, 1, 1, 1, 1, 1, 1, 1, 1,
- 1, 1, 1, 1, 1, 1, 1, 1, 1,
- 0, 0, 0, 0, 0, 0, 0, 0, 0,
- 0, 0, 0, 0, 0, 0, 0, 0, 0,
- 0, 0, 0, 0, 0, 0, 0, 0, 0,
- -1, -1, -1, -1, -1, -1, -1, -1, -1,
- -1, -1, -1, -1, -1, -1, -1, -1, -1,
- -1, -1, -1, -1, -1, -1, -1, -1, -1 };
diff --git a/Utilities/IpFunc/ipAdministrative.h b/Utilities/IpFunc/ipAdministrative.h
deleted file mode 100644
index e6b4eb3921..0000000000
--- a/Utilities/IpFunc/ipAdministrative.h
+++ /dev/null
@@ -1,80 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * Administrative Functions
- * This header is for grouping purposes for the
- * documentation only. Don't use it, use mitkIpFunc.h instead.
- */
-
-#ifndef DOXYGEN_IGNORE
-#include <mitkIpFunc.h>
-#endif
-
-#ifndef _mitkIpFunc_h
-#define _mitkIpFunc_h
-
-/* function prototypes */
-
-#if defined(__cplusplus) || defined(c_plusplus)
-extern "C" {
-#endif
-
-char *mitkIpFuncMakePicName ( char *pic_name, char *extension );
-
-void mitkIpFuncCopyTags(mitkIpPicDescriptor *pic_new, mitkIpPicDescriptor *pic_old);
-
-mitkIpPicDescriptor *mitkIpFuncConvert( mitkIpPicDescriptor *pic_old,
- mitkIpPicType_t type,
- mitkIpUInt4_t bpe );
-
-void mitkIpFuncXchange ( mitkIpPicDescriptor **pic1,
- mitkIpPicDescriptor **pic2 );
-
-void mitkIpFuncPError ( char *string );
-
-#if defined(__cplusplus) || defined(c_plusplus)
-}
-#endif
-
-
-#endif /* _mitkIpFunc_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
-
diff --git a/Utilities/IpFunc/ipArithmeticAndLogical.h b/Utilities/IpFunc/ipArithmeticAndLogical.h
deleted file mode 100644
index d4a8cb41cd..0000000000
--- a/Utilities/IpFunc/ipArithmeticAndLogical.h
+++ /dev/null
@@ -1,128 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * Arithmetic and Logical Operators.
- * This header is for grouping purposes for the
- * documentation only. Don't use it, use mitkIpFunc.h instead.
- */
-
-#ifndef DOXYGEN_IGNORE
-#include <mitkIpFunc.h>
-#endif
-
-#ifndef _mitkIpFunc_h
-#define _mitkIpFunc_h
-
-/* function prototypes */
-
-#if defined(__cplusplus) || defined(c_plusplus)
-extern "C" {
-#endif
-
-mitkIpPicDescriptor *mitkIpFuncInv ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncEqual ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t kind,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncAddC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncSubC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncMultC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncDivC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncMultI ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncDivI ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncAddI ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncAddSl ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t keep );
-
-mitkIpPicDescriptor *mitkIpFuncSubI ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncAnd ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncOr ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncNot ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return );
-
-#if defined(__cplusplus) || defined(c_plusplus)
-}
-#endif
-
-
-#endif /* _mitkIpFunc_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
-
diff --git a/Utilities/IpFunc/ipFunc.c b/Utilities/IpFunc/ipFunc.c
deleted file mode 100644
index df281b7aa0..0000000000
--- a/Utilities/IpFunc/ipFunc.c
+++ /dev/null
@@ -1,1366 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/* include files */
-
-#include "mitkIpFuncP.h"
-
-#ifdef _WIN32
-#define strcasecmp _stricmp
-#define PATH_MAX 255
-#endif
-
-/* main function */
-
-int
-main (int argc, char **argv)
-{
- /* variables */
-
- mitkIpPicDescriptor *pic_new=NULL; /* image descriptors */
- mitkIpPicDescriptor *pic_ret=NULL; /* image descriptors */
- mitkIpPicDescriptor *pic_hlp=NULL; /* image descriptors */
- mitkIpPicDescriptor *pic_old=NULL; /* image descriptors */
- mitkIpPicDescriptor *pic_mask=NULL; /* convolution mask */
- mitkIpPicDescriptor *mask_1=NULL, *mask_2=NULL; /* convolution mask */
- char operation[PATH_MAX]; /* image processing operation */
- char pic_name[PATH_MAX]; /* file name of original image */
- char pic_name_t[PATH_MAX]; /* file name of transformed im. */
- char mask_name[PATH_MAX]; /* file name of transformed im. */
- char error_nr[PATH_MAX]; /* file name of transformed im. */
- mitkIpPicType_t type;
- mitkIpUInt4_t range; /* result of range function */
- mitkIpUInt4_t no_label;
- mitkIpUInt4_t border; /* handling of the borders */
- mitkIpUInt4_t rank; /* */
- mitkIpUInt4_t keep; /* */
- mitkIpUInt4_t radius; /* */
- mitkIpUInt4_t *begin; /* start of window */
- mitkIpUInt4_t *length; /* length of window */
- mitkIpUInt4_t len_mask; /* length of mask */
- mitkIpUInt4_t dim_mask; /* dimension of mask */
- mitkIpInt4_t axis; /* reflection axis */
- mitkIpUInt4_t i;
- mitkIpFloat8_t min, max; /* extreme greyvalues */
- mitkIpFloat8_t min_gv, max_gv; /* extreme greyvalues */
- mitkIpFloat8_t gv_low, gv_up; /* */
- mitkIpFloat8_t threshold;
- mitkIpFloat8_t value; /* value that is added to image */
- mitkIpFloat8_t mean; /* mean greyvalue */
- mitkIpFloat8_t var; /* variance of greyvalues */
- mitkIpFloat8_t gv; /* new greyvalue */
- mitkIpFloat8_t s_der; /* standard derivation */
- mitkIpFloat8_t *sc; /* standard derivation */
- int *perm; /* permutation vector for transpose */
- mitkIpFloat8_t *grav; /* center of gravity */
- mitkIpFloat8_t *inertia, *ev;
- mitkIpUInt4_t *hist; /* greylevel histogram */
- mitkIpUInt4_t size_hist; /* no. of elements in histogram */
- mitkIpUInt4_t mask_size; /* size of transformation mask */
- mitkIpBool_t picput_flag=mitkIpTrue; /* */
- int *grad, *order;
-
- /* input of operation and image file name */
-
-
- if ( ((unsigned int) argc == 1) || ( ((unsigned int) argc == 2 ) && (strcasecmp (argv[1], "-h") == 0)))
- {
- printf("Usage: ipFunc operation infile outfile parameterlist\n");
- printf(" Arithmetic: AddC, AddI, DivC, DivI, MultC, MultI, SubC, SubI\n");
- printf(" Logic: And, Not, Or\n");
- printf(" Geometric: Refl, Rotate, Scale, Transpose, Window, WindowR\n");
- printf(" Point: Equal, Exp, Inv, LevWin, LN, Log, Norm, NormY\n");
- printf(" Pot, Select, SelInv, SelMM, Sqrt, Thresh, ZeroCr\n");
- printf(" Locale: Canny, Conv, GaussF, Grad, Laplace, Mean\n");
- printf(" Rank, Roberts, Shp, Sobel\n");
- printf(" Morpho: Close, Dila, Ero, Open\n");
- printf(" Statistic: Extr, ExtrC, ExtrR, ExtrROI, Mean, MeanC, MeanR\n");
- printf(" MeanROI, Median, SDev, SDevC, SDevR, SDevROI\n");
- printf(" Var, VarC, VarR, VarROI\n");
- printf(" Segmentation: Label, RegGrow\n");
- printf(" Misc: Border, BorderX, DrawPoly, Frame, Convert, MakeMorphSquareMask\n");
- exit(1);
- }
-
- strcpy ( operation , argv[1]);
- if( ((unsigned int) argc != 2) && (strcasecmp (argv[2], "-h") != 0))
- {
- strcpy ( pic_name, argv[2]);
- pic_old = mitkIpPicGet ( pic_name, NULL );
- pic_ret = pic_old;
- if ( pic_old == NULL )
- {
- printf("could not open file\n");
- exit(1);
- }
- }
- if ( strcasecmp ( operation, "Inv" ) == 0 )
- {
- if ( (unsigned int) argc != 4 )
- {
- printf ( " usage: ipFunc Inv infile outfile \n" );
- exit ( 1 );
- }
- pic_new = mitkIpFuncInv ( pic_old, pic_ret );
- }
- else if ( strcasecmp ( operation, "Label" ) == 0 )
- {
- if ( (unsigned int) argc != 4 )
- {
- printf ( " ipFunc Label infile outfile \n" );
- exit ( 1 );
- }
- pic_new = mitkIpFuncLabel ( pic_old, &no_label );
- printf ("Number of Labels: %d \n", no_label );
- }
- else if ( strcasecmp ( operation, "RegGrow" ) == 0 )
- {
- mitkIpUInt4_t blabel, rlabel, kind;
-
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != pic_old->dim * 2 + 8 ) )
- {
- printf ( " usage: ipFunc RegGrow infile outfile beg_seed1...beg_seedn end_seed1...end_seedn border_label region_label std_dev_factor(double!!) kind(0=show border,1=show region)\n" );
- exit ( 1 );
- }
- begin = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpUInt4_t ) );
- length = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+i], "%d", &begin[i] );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+pic_old->dim+i], "%d", &length[i] );
- printf ( " %d %d %d %d %d %d \n", begin[0], begin[1], begin[2], length[0], length[1], length[2] );
-
- sscanf ( argv[4+pic_old->dim*2], "%d", &blabel );
- sscanf ( argv[5+pic_old->dim*2], "%d", &rlabel );
- s_der=atof(argv[6+pic_old->dim*2]);
- sscanf ( argv[7+pic_old->dim*2], "%d", &kind );
-
- pic_new = mitkIpFuncRegGrow ( pic_old, pic_old->dim, begin, length, blabel, rlabel, s_der, kind );
- free ( begin );
- free ( length );
- }
- else if ( strcasecmp ( operation, "Convert" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0) ) ||
- ( (unsigned int) argc != 6 ) )
- {
- printf("Usage: ipFunc convert infile outfile type bpe \n");
- printf("type must be given as number\n");
- printf("type: mitkIpPicInt = 3\n");
- printf(" mitkIpPicUInt = 4\n");
- printf(" mitkIpPicFloat = 5\n");
- exit(1);
- }
- sscanf ( argv[4],"%d", &rank );
- sscanf ( argv[5],"%d", &range );
- type = rank;
- pic_new = mitkIpFuncConvert ( pic_old, rank, range );
- }
- else if ( strcasecmp ( operation, "Refl" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Refl infile outfile axis \n");
- printf("axis must be given as number\n");
- printf(" x-axis = 0\n");
- printf(" y-axis = 1\n");
- printf(" z-axis = 2\n");
- exit(1);
- }
- sscanf ( argv[4], "%d", &axis );
- pic_new = mitkIpFuncRefl ( pic_old, axis );
- }
- else if ( strcasecmp ( operation, "Sqrt" ) == 0 )
- {
- if ( (unsigned int) argc != 4 )
- {
- printf ( " ipFunc Sqrt infile outfile \n" );
- exit ( 1 );
- }
- keep = mitkIpFuncKeep;
- pic_new = mitkIpFuncSqrt ( pic_old, keep, pic_ret );
- }
- else if ( strcasecmp ( operation, "Pot" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Pot infile outfile exponent \n");
- exit(1);
- }
- keep = mitkIpFuncKeep;
- sscanf ( argv[4], "%lf", &value );
- pic_new = mitkIpFuncPot ( pic_old, value, keep, pic_ret );
- printf ( " Fehler : %d \n", mitkIpFuncErrno );
- }
- else if ( strcasecmp ( operation, "DivC" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc DivC infile outfile value \n");
- exit(1);
- }
- keep = mitkIpFuncKeep;
- sscanf ( argv[4], "%lf", &value );
- pic_new = mitkIpFuncDivC ( pic_old, value, keep, pic_ret );
- }
- else if ( strcasecmp ( operation, "MultC" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc MultC infile outfile value \n");
- exit(1);
- }
- keep = mitkIpFuncKeep;
- sscanf ( argv[4], "%lf", &value );
- pic_new = mitkIpFuncMultC ( pic_old, value, keep, pic_ret );
- }
- else if ( strcasecmp ( operation, "SubC" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc SubC infile outfile value \n");
- exit(1);
- }
- keep = mitkIpFuncKeep;
- sscanf ( argv[4], "%lf", &value );
- pic_new = mitkIpFuncSubC ( pic_old, value, keep, pic_ret );
- }
- else if ( strcasecmp ( operation, "AddC" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc AddC infile outfile value \n");
- exit(1);
- }
- keep = mitkIpFuncKeep;
- sscanf ( argv[4], "%lf", &value );
- pic_new = mitkIpFuncAddC ( pic_old, value, keep, pic_ret );
- }
- else if ( strcasecmp ( operation, "AddSl" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 4 ) )
- {
- printf("Usage: ipFunc AddSl infile outfile \n");
- exit(1);
- }
- keep = mitkIpFuncKeep;
- pic_new = mitkIpFuncAddSl ( pic_old, keep );
- }
- else if ( strcasecmp ( operation, "DivI" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc DivI infile outfile image \n");
- exit(1);
- }
- keep = mitkIpFuncKeep;
- strcpy ( mask_name, "" );
- sscanf ( argv[4], "%s", mask_name );
- pic_hlp = mitkIpPicGet ( mask_name, NULL );
- if ( pic_hlp != NULL )
- pic_new = mitkIpFuncDivI ( pic_old, pic_hlp, keep, pic_ret );
- else
- printf ( " iamge doesn't exist \n" );
- }
- else if ( strcasecmp ( operation, "MultI" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc MultI infile outfile image \n");
- exit(1);
- }
- keep = mitkIpFuncKeep;
- strcpy ( mask_name, "" );
- sscanf ( argv[4], "%s", mask_name );
- pic_hlp = mitkIpPicGet ( mask_name, NULL );
- if ( pic_hlp != NULL )
- pic_new = mitkIpFuncMultI ( pic_old, pic_hlp, keep, pic_ret );
- else
- printf ( " iamge doesn't exist \n" );
- }
- else if ( strcasecmp ( operation, "AddI" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc AddI infile outfile image \n");
- exit(1);
- }
- keep = mitkIpFuncKeep;
- strcpy ( mask_name, "" );
- sscanf ( argv[4], "%s", mask_name );
- pic_hlp = mitkIpPicGet ( mask_name, NULL );
- if ( pic_hlp != NULL )
- pic_new = mitkIpFuncAddI ( pic_old, pic_hlp, keep, pic_ret );
- else
- printf ( " iamge doesn't exist \n" );
- }
- else if ( strcasecmp ( operation, "SubI" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc SubI infile outfile image \n");
- exit(1);
- }
- keep = mitkIpFuncKeep;
- strcpy ( mask_name, "" );
- sscanf ( argv[4], "%s", mask_name );
- pic_hlp = mitkIpPicGet ( mask_name, NULL );
- if ( pic_hlp != NULL )
- pic_new = mitkIpFuncSubI ( pic_old, pic_hlp, keep, pic_ret );
- else
- printf ( " iamge doesn't exist \n" );
- }
- else if ( strcasecmp ( operation, "Or" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Or infile outfile image \n");
- exit(1);
- }
- strcpy ( mask_name, "" );
- sscanf ( argv[4], "%s", mask_name );
- pic_hlp = mitkIpPicGet ( mask_name, NULL );
- if ( pic_hlp != NULL )
- pic_new = mitkIpFuncOr ( pic_old, pic_hlp, pic_ret );
- else
- printf ( " iamge doesn't exist \n" );
- }
- else if ( strcasecmp ( operation, "And" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc And infile outfile image \n");
- exit(1);
- }
- strcpy ( mask_name, "" );
- sscanf ( argv[4], "%s", mask_name );
- pic_hlp = mitkIpPicGet ( mask_name, NULL );
- if ( pic_hlp != NULL )
- pic_new = mitkIpFuncAnd ( pic_old, pic_hlp, pic_ret );
- else
- printf ( " iamge doesn't exist \n" );
- }
- else if ( strcasecmp ( operation, "Not" ) == 0 )
- {
- if ( (unsigned int) argc != 4 )
- {
- printf ( " ipFunc Not infile outfile \n" );
- exit ( 1 );
- }
- pic_new = mitkIpFuncNot ( pic_old, NULL );
- }
- else if ( strcasecmp ( operation, "Close" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Close infile outfile mask \n");
- printf(" mask must be the name of a PIC-file containing the mask \n" );
- exit(1);
- }
- border = mitkIpFuncBorderZero;
- strcpy ( mask_name, "" );
- sscanf ( argv[4], "%s", mask_name );
- pic_mask = mitkIpPicGet ( mask_name, NULL );
- mitkIpPicPut ( "Test.mask", pic_mask );
- if ( pic_mask != NULL )
- {
- pic_new = mitkIpFuncClose( pic_old, pic_mask, border );
- mitkIpPicFree ( pic_mask );
- }
- else
- printf ( " iamge doesn't exist \n" );
- }
- else if ( strcasecmp ( operation, "Open" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Open infile outfile mask \n");
- printf(" mask must be the name of a PIC-file containing the mask \n" );
- exit(1);
- }
- border = mitkIpFuncBorderZero;
- strcpy ( mask_name, "" );
- sscanf ( argv[4], "%s", mask_name );
- pic_mask = mitkIpPicGet ( mask_name, NULL );
- if ( pic_mask != NULL )
- {
- pic_new = mitkIpFuncOpen ( pic_old, pic_mask, border );
- mitkIpPicFree ( pic_mask );
- }
- else
- printf ( " iamge doesn't exist \n" );
- }
- else if ( strcasecmp ( operation, "Dila" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Dila infile outfile mask \n");
- printf(" mask must be the name of a PIC-file containing the mask \n" );
- exit(1);
- }
- border = mitkIpFuncBorderZero;
- strcpy ( mask_name, "" );
- sscanf ( argv[4], "%s", mask_name );
- pic_mask = mitkIpPicGet ( mask_name, NULL );
- if ( pic_mask != NULL )
- {
- pic_new = mitkIpFuncDila ( pic_old, pic_mask, border );
- mitkIpPicFree ( pic_mask );
- }
- else
- printf ( " iamge doesn't exist \n" );
- }
- else if ( strcasecmp ( operation, "Ero" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Ero infile outfile mask \n");
- printf(" mask must be the name of a PIC-file containing the mask \n" );
- exit(1);
- }
- border = mitkIpFuncBorderZero;
- strcpy ( mask_name, "" );
- sscanf ( argv[4], "%s", mask_name );
- pic_mask = mitkIpPicGet ( mask_name, NULL );
- if ( pic_mask != NULL )
- {
- pic_new = mitkIpFuncEro ( pic_old, pic_mask, border );
- mitkIpPicFree ( pic_mask );
- }
- else
- printf ( " iamge doesn't exist \n" );
- }
- /* else if ( strcasecmp ( operation, "hitmiss" ) == 0 )
- {
- strcpy ( mask_name, "" );
- printf ( " mask name 1 : " );
- scanf ( "%s", mask_name );
- mask_1 = mitkIpPicGet ( mask_name, NULL );
- if ( mask_1 != NULL )
- {
- pic_new = mitkIpFuncHitMissI( pic_old, mask_1, mitkIpFuncBorderZero );
- mitkIpPicFree ( mask_1 );
- }
- else
- printf ( " iamge doesn't exist \n" );
- }*/
- else if ( strcasecmp ( operation, "Scale" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != pic_old->dim + 5 ) )
- {
- printf("Usage: ipFunc Scale infile outfile sc_fact1 ... sc_factn kind \n");
- printf(" sc_factx must contain a positive float number \n" );
- printf(" kind describes the interpolation used to scale :\n" );
- printf(" next neighbour : 7 \n" );
- printf(" bilinear : 6 \n" );
- exit(1);
- }
- sc = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpFloat8_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- {
- sscanf ( argv[4+i], "%lf", &sc[i] );
- }
- sscanf ( argv[4+pic_old->dim], "%d", &keep );
- pic_new = mitkIpFuncScale ( pic_old, sc, keep );
- pic_ret = NULL;
- free(sc);
- }
- else if ( strcasecmp ( operation, "Transpose" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != pic_old->dim + 4 ) )
- {
- printf("Usage: ipFunc Transpose infile outfile perm_1 ... perm_n \n");
- printf(" perm_1 ... perm_n must be a permutation vector, e.g., 4 2 1 3 \n" );
- exit(1);
- }
- perm = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpFloat8_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- {
- sscanf ( argv[4+i], "%d", &perm[i] );
- }
- pic_new = mitkIpFuncTranspose ( pic_old, NULL, perm );
- pic_ret = NULL;
- free(perm);
- }
- else if ( strcasecmp ( operation, "Roberts" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Roberts infile outfile dim_mask \n");
- exit(1);
- }
- sscanf ( argv[4], "%d", &dim_mask );
- border = 3;
- pic_new = mitkIpFuncRoberts ( pic_old, dim_mask, border );
- }
- else if ( strcasecmp ( operation, "GaussF" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 6 ) )
- {
- printf("Usage: ipFunc GaussF infile outfile len_mask dim_mask \n");
- exit(1);
- }
- sscanf ( argv[4], "%d", &len_mask );
- sscanf ( argv[5], "%d", &dim_mask );
- border = 3;
- pic_new = mitkIpFuncGausF ( pic_old, len_mask, dim_mask, border );
- }
- else if ( strcasecmp ( operation, "Canny" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 7 ) )
- {
- printf("Usage: ipFunc Canny infile outfile len_mask dim_mask threshold \n");
- exit(1);
- }
- sscanf ( argv[4], "%d", &len_mask );
- sscanf ( argv[5], "%d", &dim_mask );
- sscanf ( argv[6], "%lf", &threshold );
- border = 3;
- if ( pic_new != NULL ) mitkIpPicFree ( pic_new );
- pic_new = mitkIpFuncCanny ( pic_old, dim_mask, len_mask,
- threshold, border );
- }
- else if ( strcasecmp ( operation, "Rank" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 7 ) )
- {
- printf("Usage: ipFunc Rank infile outfile len_mask dim_mask rank \n");
- exit(1);
- }
- sscanf ( argv[4], "%d", &len_mask );
- sscanf ( argv[5], "%d", &dim_mask );
- sscanf ( argv[6], "%d", &rank );
- border = 3;
- pic_new = mitkIpFuncRank ( pic_old, rank, dim_mask, len_mask, border );
- }
- else if ( strcasecmp ( operation, "MeanF" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 6 ) )
- {
- printf("Usage: ipFunc MeanF infile outfile len_mask dim_mask \n");
- exit(1);
- }
- sscanf ( argv[4], "%d", &len_mask );
- sscanf ( argv[5], "%d", &dim_mask );
- border = 3;
- pic_new = mitkIpFuncMeanF ( pic_old, len_mask, dim_mask, border );
- }
- else if ( strcasecmp ( operation, "Shp" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 6 ) )
- {
- printf("Usage: ipFunc Shp infile outfile len_mask dim_mask \n");
- exit(1);
- }
- sscanf ( argv[4], "%d", &len_mask );
- sscanf ( argv[5], "%d", &dim_mask );
- border = 3;
- pic_new = mitkIpFuncShp ( pic_old, dim_mask, border, len_mask );
- }
- else if ( strcasecmp ( operation, "Laplace" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Laplace infile outfile dim_mask \n");
- exit(1);
- }
- sscanf ( argv[4], "%d", &dim_mask );
- border = 3;
- pic_new = mitkIpFuncLaplace ( pic_old, dim_mask, border );
- }
- else if ( strcasecmp ( operation, "Sobel" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Sobel infile outfile dim_mask \n");
- exit(1);
- }
- sscanf ( argv[4], "%d", &dim_mask );
- border = 3;
- pic_new = mitkIpFuncSobel ( pic_old, dim_mask, border );
- }
- else if ( strcasecmp ( operation, "Grad" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Grad infile outfile dim_mask \n");
- exit(1);
- }
- sscanf ( argv[4], "%d", &dim_mask );
- border = 3;
- pic_new = mitkIpFuncGrad ( pic_old, dim_mask, border );
- }
- else if ( strcasecmp ( operation, "Thresh" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Thresh infile outfile threshold \n");
- exit(1);
- }
- sscanf ( argv[4], "%lf", &threshold );
- pic_new = mitkIpFuncThresh ( pic_old, threshold, pic_ret );
- }
- else if ( strcasecmp ( operation, "Conv" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 5 ) )
- {
- printf("Usage: ipFunc Conv infile outfile mask \n");
- printf(" mask must be the name of a PIC-file containing the mask \n" );
- exit(1);
- }
- strcpy ( mask_name, "" );
- sscanf ( argv[4], "%s", mask_name );
- border = mitkIpFuncBorderZero;
-
- pic_mask = mitkIpPicGet ( mask_name, NULL );
- if ( pic_mask != NULL )
- {
- pic_new = mitkIpFuncConv ( pic_old, pic_mask, border );
- mitkIpPicFree ( pic_mask );
- }
- }
- else if ( strcasecmp ( operation, "ZeroCr" ) == 0 )
- {
- if ( (unsigned int) argc != 4 )
- {
- printf ( " ipFunc ZeroCr infile outfile \n" );
- exit ( 1 );
- }
- pic_new = mitkIpFuncZeroCr ( pic_old );
- }
- else if ( strcasecmp ( operation, "Exp" ) == 0 )
- {
- if ( (unsigned int) argc != 4 )
- {
- printf ( " ipFunc Exp infile outfile \n" );
- exit ( 1 );
- }
- pic_new = mitkIpFuncExp ( pic_old, mitkIpFuncMinMax, pic_ret );
- }
- else if ( strcasecmp ( operation, "Log" ) == 0 )
- {
- if ( (unsigned int) argc != 4 )
- {
- printf ( " ipFunc Log infile outfile \n" );
- exit ( 1 );
- }
- pic_new = mitkIpFuncLog ( pic_old );
- }
- else if ( strcasecmp ( operation, "LN" ) == 0 )
- {
- if ( (unsigned int) argc != 4 )
- {
- printf ( " ipFunc LN infile outfile \n" );
- exit ( 1 );
- }
- pic_new = mitkIpFuncLN ( pic_old );
- }
- else if ( strcasecmp ( operation, "Norm" ) == 0 )
- {
- if ( (unsigned int) argc != 4 )
- {
- printf ( " ipFunc Norm infile outfile \n" );
- exit ( 1 );
- }
- pic_new = mitkIpFuncNorm ( pic_old, pic_ret );
- }
- else if ( strcasecmp ( operation, "NormXY" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 6 ) )
- {
- printf("Usage: ipFunc NormXY infile outfile lower_value upper_value\n");
- exit(1);
- }
- sscanf ( argv[4],"%lf", &min_gv );
- sscanf ( argv[5],"%lf", &max_gv );
- pic_new = mitkIpFuncNormXY ( pic_old, min_gv, max_gv, pic_ret );
- }
- else if ( strcasecmp ( operation, "Equal" ) == 0 )
- {
- if ( (unsigned int) argc != 4 )
- {
- printf ( " ipFunc Equal infile outfile \n" );
- exit ( 1 );
- }
- keep = mitkIpFuncMinMax;
- pic_new = mitkIpFuncEqual ( pic_old, keep, pic_ret );
- }
- else if ( strcasecmp ( operation, "Extr" ) == 0 )
- {
- if ( ( (unsigned int) argc != 3 ) || ( strcasecmp (argv[2], "-h") == 0 ) )
- {
- printf ( " ipFunc Extr infile \n" );
- exit ( 1 );
- }
- mitkIpFuncExtr ( pic_old, &min, &max );
- picput_flag = mitkIpFalse;
- printf ( " min: %12.2lf max: %12.2lf \n", min, max );
- }
-#ifdef MESCHACH
- else if ( strcasecmp ( operation, "Inertia" ) == 0 )
- {
- if ( ( (unsigned int) argc != 3 ) || ( strcasecmp (argv[2], "-h") == 0 ) )
- {
- printf ( " ipFunc Inertia infile \n" );
- exit ( 1 );
- }
- mitkIpFuncInertia ( pic_old, &inertia, &ev );
- picput_flag = mitkIpFalse;
- for ( i = 0; i < pic_old->dim; i++ )
- printf ( " eigenvalue[%d] = %lf \n", i, ev[i] );
- for ( i = 0; i < pic_old->dim * pic_old->dim; i++ )
- printf ( " inertia[%d] = %lf \n", i, inertia[i] );
- }
-#endif
- else if ( strcasecmp ( operation, "Grav" ) == 0 )
- {
- if ( ( (unsigned int) argc != 3 ) || ( strcasecmp (argv[2], "-h") == 0 ) )
- {
- printf ( " ipFunc Grav infile \n" );
- exit ( 1 );
- }
- grav = mitkIpFuncGrav ( pic_old );
- picput_flag = mitkIpFalse;
- for ( i = 0; i < pic_old->dim; i++ )
- printf ( " center of gravity[%d] = %lf \n", i, grav[i] );
- }
- else if ( strcasecmp ( operation, "Median" ) == 0 )
- {
- if ( ( (unsigned int) argc != 3 ) || ( strcasecmp (argv[2], "-h") == 0 ) )
- {
- printf ( " ipFunc Median infile \n" );
- exit ( 1 );
- }
- mean = mitkIpFuncMedI ( pic_old );
- printf ( " median: %lf\n", mean );
- }
- else if ( strcasecmp ( operation, "Mean" ) == 0 )
- {
- if ( ( (unsigned int) argc != 3 ) || ( strcasecmp (argv[2], "-h") == 0 ) )
- {
- printf ( " ipFunc Mean infile \n" );
- exit ( 1 );
- }
- mean = mitkIpFuncMean ( pic_old );
- printf ( " mean: %lf\n", mean );
- }
- else if ( strcasecmp ( operation, "Var" ) == 0 )
- {
- if ( ( (unsigned int) argc != 3 ) || ( strcasecmp (argv[2], "-h") == 0 ) )
- {
- printf ( " ipFunc Var infile \n" );
- exit ( 1 );
- }
- var = mitkIpFuncVar ( pic_old );
- printf ( " variance : %lf\n", var );
- }
- else if ( strcasecmp ( operation, "SDev" ) == 0 )
- {
- if ( ( (unsigned int) argc != 3 ) || ( strcasecmp (argv[2], "-h") == 0 ) )
- {
- printf ( " ipFunc SDev infile \n" );
- exit ( 1 );
- }
- s_der = mitkIpFuncSDev ( pic_old );
- printf ( " standard derivation : %lf\n", s_der );
- }
- else if ( strcasecmp ( operation, "SelMM" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 6 ) )
- {
- printf("Usage: ipFunc SelMM infile outfile lower_value upper_value \n");
- exit(1);
- }
- sscanf ( argv[4], "%lf", &gv_low );
- sscanf ( argv[5], "%lf", &gv_up );
- pic_new = mitkIpFuncSelMM ( pic_old, gv_low, gv_up, pic_ret );
- }
- /*
- else if ( strcasecmp ( operation, "sel_mm_inv" ) == 0 )
- {
- printf ( " lower greyvalue : " );
- scanf ( "%lf", &gv_low );
- printf ( " upper greyvalue : " );
- scanf ( "%lf", &gv_up );
- printf ( " lower greyvalue (new): " );
- scanf ( "%lf", &gv_new_low );
- printf ( " upper greyvalue (new): " );
- scanf ( "%lf", &gv_new_up );
- pic_new = mitkIpFuncSelMM_Inv ( pic_old, gv_low, gv_up, gv_new_low, gv_new_up, pic_ret );
- }
- */
- else if ( strcasecmp ( operation, "Select" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 7 ) )
- {
- printf("Usage: ipFunc Select infile outfile lower_value upper_value new_value\n");
- exit(1);
- }
- sscanf ( argv[4], "%lf", &gv_low );
- sscanf ( argv[5], "%lf", &gv_up );
- sscanf ( argv[6], "%lf", &gv );
- pic_new = mitkIpFuncSelect ( pic_old, gv_low, gv_up, gv, pic_ret );
- }
- else if ( strcasecmp ( operation, "SelInv" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 7 ) )
- {
- printf("Usage: ipFunc SelInv infile outfile lower_value upper_value new_value\n");
- exit(1);
- }
- sscanf ( argv[4], "%lf", &gv_low );
- sscanf ( argv[5], "%lf", &gv_up );
- sscanf ( argv[6], "%lf", &gv );
- pic_new = mitkIpFuncSelInv ( pic_old, gv_low, gv_up, gv, pic_ret );
- }
- else if ( strcasecmp ( operation, "LevWin" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 6 ) )
- {
- printf("Usage: ipFunc LevWin infile outfile level window \n" );
- exit(1);
- }
- sscanf ( argv[4], "%lf", &gv_low );
- sscanf ( argv[5], "%lf", &gv_up );
- pic_new = mitkIpFuncLevWin ( pic_old, gv_low, gv_up, pic_ret );
- }
- else if ( strcasecmp ( operation, "Box" ) == 0 )
- {
- if ( ( (unsigned int) argc != 3 ) || ( strcasecmp (argv[2], "-h") == 0 ) )
- {
- printf ( " usage: ipFunc Box infile \n" );
- exit ( 1 );
- }
- picput_flag = mitkIpFalse; length=NULL;
- mitkIpFuncBox ( pic_old, &begin, &length );
- for ( i =0; i < pic_old->dim; i++ )
- printf ( " [%d]\t links oben %d \t\t rechts unten: %d \n", i, begin[i], length[i] );
- }
- else if ( strcasecmp ( operation, "BorderX" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != pic_old->dim + 5 ) )
- {
- printf ( " usage: ipFunc BorderX infile outfile edge1...edgen value\n" );
- exit ( 1 );
- }
- begin = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- {
- sscanf ( argv[4+i], "%d", &begin[i] );
- }
- sscanf ( argv[4+pic_old->dim], "%lf", &value );
- pic_mask = mitkIpPicNew ();
- pic_mask->type = 3;
- pic_mask->bpe = 16;
- pic_mask->dim = pic_old->dim;
- for ( i = 0; i < pic_old->dim; i++ )
- pic_mask->n[i] = begin[i] *2 + 1;
- pic_new = mitkIpFuncBorderX ( pic_old, pic_mask, value, NULL );
- mitkIpPicFree ( pic_mask );
- free ( begin );
- }
- else if ( strcasecmp ( operation, "Frame" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != pic_old->dim + 5 ) )
- {
- printf ( " usage: ipFunc Edge infile outfile edge1...edgen value\n" );
- exit ( 1 );
- }
- begin = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- {
- sscanf ( argv[4+i], "%d", &begin[i] );
- }
- sscanf ( argv[4+pic_old->dim], "%lf", &value );
- pic_new = mitkIpFuncFrame ( pic_old, begin, value );
- free ( begin );
- }
- else if ( strcasecmp ( operation, "WindowR" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != pic_old->dim + 5 ) )
- {
- printf ( " usage: ipFunc WindowR infile outfile image beg1...begn \n" );
- exit ( 1 );
- }
- keep = mitkIpFuncKeep;
- strcpy ( mask_name, "" );
- sscanf ( argv[4], "%s", mask_name );
- pic_hlp = mitkIpPicGet ( mask_name, NULL );
- begin = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- {
- sscanf ( argv[5+i], "%d", &begin[i] );
- }
- pic_new = mitkIpFuncWindowR ( pic_old, pic_hlp, begin, mitkIpFuncNoKeep );
- free ( begin );
- }
- else if ( strcasecmp ( operation, "Rotate" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != pic_old->dim * 2 + 4 ) )
- {
- printf ( " usage: ipFunc Rotate infile outfile grad1...gradn order1...ordern \n" );
- exit ( 1 );
- }
- grad = malloc ( _mitkIpPicNDIM * sizeof ( int ) );
- order = malloc ( _mitkIpPicNDIM * sizeof ( int ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+i], "%d", &grad[i] );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+pic_old->dim+i], "%d", &order[i] );
- pic_new = mitkIpFuncRotate ( pic_old, NULL, grad, order );
- free ( grad );
- free ( order );
- }
- else if ( strcasecmp ( operation, "Window" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != pic_old->dim * 2 + 4 ) )
- {
- printf ( " usage: ipFunc Window infile outfile beg1...begn length1...lengthn \n" );
- exit ( 1 );
- }
- begin = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpUInt4_t ) );
- length = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+i], "%d", &begin[i] );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+pic_old->dim+i], "%d", &length[i] );
- printf ( " %d %d %d %d %d %d \n", begin[0], begin[1], begin[2], length[0], length[1], length[2] );
- pic_new = mitkIpFuncWindow ( pic_old, begin, length );
- free ( begin );
- free ( length );
- }
- else if ( strcasecmp ( operation, "DrawPoly" ) == 0 )
- {
- /*
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 2 * pic_old->dim + 5 ) )
- */
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) )
- {
- printf ( " usage: ipFunc Window infile outfile nr_points x1...xn y1...yn \n" );
- exit ( 1 );
- }
- sscanf ( argv[4], "%d", &radius );
- begin = malloc ( radius * sizeof ( mitkIpUInt4_t ) );
- length = malloc ( radius * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < radius; i++ )
- sscanf ( argv[5+i], "%d", &begin[i] );
- for ( i = 0; i < radius; i++ )
- sscanf ( argv[5+radius+i], "%d", &length[i] );
- pic_new = mitkIpFuncDrawPoly ( pic_old, begin, length, radius );
- free ( begin );
- free ( length );
- }
- else if ( strcasecmp ( operation, "MeanROI" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 4 + pic_old->dim * 2 ) )
- {
- printf ( " usage: ipFunc MeanROI infile nr_points x1...xn y1...yn \n" );
- exit ( 1 );
- }
- sscanf ( argv[3], "%d", &radius );
- begin = malloc ( radius * sizeof ( mitkIpUInt4_t ) );
- length = malloc ( radius * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+i], "%d", &begin[i] );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+pic_old->dim+i], "%d", &length[i] );
- mean = mitkIpFuncMeanROI ( pic_old, begin, length, radius );
- printf ( " mean: %lf \n", mean );
- free ( begin );
- free ( length );
- }
- else if ( strcasecmp ( operation, "VarROI" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 4 + pic_old->dim * 2 ) )
- {
- printf ( " usage: ipFunc VarROI infile nr_points x1...xn y1...yn \n" );
- exit ( 1 );
- }
- sscanf ( argv[3], "%d", &radius );
- begin = malloc ( radius * sizeof ( mitkIpUInt4_t ) );
- length = malloc ( radius * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+i], "%d", &begin[i] );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+pic_old->dim+i], "%d", &length[i] );
- var = mitkIpFuncVarROI ( pic_old, begin, length, radius );
- printf ( " var: %lf \n", var );
- free ( begin );
- free ( length );
- }
- else if ( strcasecmp ( operation, "SDevROI" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 4 + pic_old->dim * 2 ) )
- {
- printf ( " usage: ipFunc SDevROI infile nr_points x1...xn y1...yn \n" );
- exit ( 1 );
- }
- sscanf ( argv[3], "%d", &radius );
- begin = malloc ( radius * sizeof ( mitkIpUInt4_t ) );
- length = malloc ( radius * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+i], "%d", &begin[i] );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+pic_old->dim+i], "%d", &length[i] );
- var = mitkIpFuncSDevROI ( pic_old, begin, length, radius );
- printf ( " var: %lf \n", var );
- free ( begin );
- free ( length );
- }
- else if ( strcasecmp ( operation, "ExtrROI" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 4 + pic_old->dim * 2 ) )
- {
- printf ( " usage: ipFunc ExtrROI infile nr_points x1...xn y1...yn \n" );
- exit ( 1 );
- }
- sscanf ( argv[3], "%d", &radius );
- begin = malloc ( radius * sizeof ( mitkIpUInt4_t ) );
- length = malloc ( radius * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+i], "%d", &begin[i] );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+pic_old->dim+i], "%d", &length[i] );
- mitkIpFuncExtrROI ( pic_old, &min, &max, begin, length, radius );
- printf ( " min: %lf max: %lf\n", min, max );
- free ( begin );
- free ( length );
- }
- else if ( strcasecmp ( operation, "VarR" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 3 + 2 * pic_old->dim ) )
- {
- printf ( " usage: ipFunc VarR infile beg1...begn length1...lengthn \n" );
- exit ( 1 );
- }
- begin = malloc ( pic_old->dim * sizeof ( mitkIpUInt4_t ) );
- length = malloc ( pic_old->dim * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[3+i], "%d", &begin[i] );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[3+pic_old->dim+i], "%d", &length[i] );
- var = mitkIpFuncVarR ( pic_old, begin, length );
- printf ( " var: %lf \n", var );
- free ( begin );
- free ( length );
- }
- else if ( strcasecmp ( operation, "SDevR" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 3 + 2 * pic_old->dim ) )
- {
- printf ( " usage: ipFunc SDevR infile beg1...begn length1...lengthn \n" );
- exit ( 1 );
- }
- begin = malloc ( pic_old->dim * sizeof ( mitkIpUInt4_t ) );
- length = malloc ( pic_old->dim * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[3+i], "%d", &begin[i] );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[3+pic_old->dim+i], "%d", &length[i] );
- var = mitkIpFuncVarR ( pic_old, begin, length );
- s_der = mitkIpFuncSDevR ( pic_old, begin, length );
- printf ( " s_der: %lf \n", s_der );
- free ( begin );
- free ( length );
- }
- else if ( strcasecmp ( operation, "MeanR" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 3 + 2 * pic_old->dim ) )
- {
- printf ( " usage: ipFunc MeanR infile beg1...begn length1...lengthn \n" );
- exit ( 1 );
- }
- begin = malloc ( pic_old->dim * sizeof ( mitkIpUInt4_t ) );
- length = malloc ( pic_old->dim * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[3+i], "%d", &begin[i] );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[3+pic_old->dim+i], "%d", &length[i] );
- var = mitkIpFuncVarR ( pic_old, begin, length );
- mean = mitkIpFuncMeanR ( pic_old, begin, length );
- printf ( " mean: %lf \n", mean );
- free ( begin );
- free ( length );
- }
- else if ( strcasecmp ( operation, "ExtrR" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 3 + 2 * pic_old->dim ) )
- {
- printf ( " usage: ipFunc ExtrR infile beg1...begn length1...lengthn \n" );
- exit ( 1 );
- }
- begin = malloc ( pic_old->dim * sizeof ( mitkIpUInt4_t ) );
- length = malloc ( pic_old->dim * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[3+i], "%d", &begin[i] );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[3+pic_old->dim+i], "%d", &length[i] );
- var = mitkIpFuncVarR ( pic_old, begin, length );
- mitkIpFuncExtrR ( pic_old, &min, &max, begin, length );
- printf ( " min: %lf max: %lf \n", min, max );
- free ( begin );
- free ( length );
- }
- else if ( strcasecmp ( operation, "SDevC" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 4 + pic_old->dim ) )
- {
- printf ( " usage: ipFunc SDevR infile radius begin1...beginn \n" );
- exit ( 1 );
- }
- begin = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+i], "%d", &begin[i] );
- sscanf ( argv[3], "%d", &radius );
- s_der = mitkIpFuncSDevC ( pic_old, begin, radius );
- printf ( " s_dev: %lf \n", s_der );
- free ( begin );
- }
- else if ( strcasecmp ( operation, "VarC" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 4 + pic_old->dim ) )
- {
- printf ( " usage: ipFunc VarC infile radius begin1...beginn \n" );
- exit ( 1 );
- }
- begin = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+i], "%d", &begin[i] );
- sscanf ( argv[3], "%d", &radius );
- var = mitkIpFuncVarC ( pic_old, begin, radius );
- printf ( " var: %lf \n", var );
- free ( begin );
- }
- else if ( strcasecmp ( operation, "MeanC" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 4 + pic_old->dim ) )
- {
- printf ( " usage: ipFunc MeanC infile radius begin1...beginn \n" );
- exit ( 1 );
- }
- begin = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- sscanf ( argv[4+i], "%d", &begin[i] );
- sscanf ( argv[3], "%d", &radius );
- mean = mitkIpFuncMeanC ( pic_old, begin, radius );
- printf ( " mean: %lf \n", mean );
- free ( begin );
- }
- else if ( strcasecmp ( operation, "ExtrC" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 4 + pic_old->dim ) )
- {
- printf ( " usage: ipFunc ExtrC infile radius begin1...beginn \n" );
- exit ( 1 );
- }
- begin = malloc ( _mitkIpPicNDIM * sizeof ( mitkIpUInt4_t ) );
- for ( i = 0; i < pic_old->dim; i++ )
- scanf ( argv[4+i], "%d", &begin[i] );
- sscanf ( argv[3], "%d", &radius );
- mitkIpFuncExtrC ( pic_old, &min, &max, begin, radius );
- printf ( " min: %lf max: %lf \n", min, max );
- free ( begin );
- }
- else if ( strcasecmp ( operation, "MakeMorphSquareMask" ) == 0 )
- {
- if ( ( (unsigned int) argc == 2 ) ||
- ( ( (unsigned int) argc == 3 ) && ( strcasecmp (argv[2], "-h") == 0 ) ) ||
- ( (unsigned int) argc != 6 ) )
- {
- printf ( " usage: ipFunc MakeMorphSquareMask infile outfile dim size\n" );
- exit ( 1 );
- }
- sscanf ( argv[4], "%d", &dim_mask );
- sscanf ( argv[5], "%d", &mask_size );
-
- pic_new=mitkIpPicCopyHeader(pic_old,NULL);
- pic_new->dim=dim_mask;
- for ( i = 0; i < pic_old->dim; i++ )
- pic_new->n[i]=mask_size;
- pic_new->data = calloc ( _mitkIpPicSize(pic_new), 1 );
- mitkIpFuncAddC(pic_new, 1.0, mitkIpFuncKeep, pic_new);
- }
- else
- printf ( " illegal operation \n" );
-
-
- if ( mitkIpFuncErrno > mitkIpOK )
- {
- mitkIpFuncPError ( error_nr );
- exit ( 1 );
- }
- if ( ( pic_new != 0 ) && ( picput_flag ) )
- {
- strcpy ( pic_name_t, argv[3] );
- mitkIpPicPut ( pic_name_t, pic_new );
- picput_flag = mitkIpTrue;
- }
-
-
- if ( pic_ret )
- {
- mitkIpPicFree ( pic_ret );
- pic_old = NULL;
- pic_ret = NULL;
- pic_new = NULL;
- }
- else
- {
- if ( pic_old != NULL ) mitkIpPicFree ( pic_old );
- pic_old = NULL;
- if ( pic_new != NULL ) mitkIpPicFree ( pic_new );
- pic_new = NULL;
- if ( pic_hlp != NULL ) mitkIpPicFree ( pic_hlp );
- pic_hlp = NULL;
- }
-
- return 0;
-}
-
diff --git a/Utilities/IpFunc/ipFunc.dox b/Utilities/IpFunc/ipFunc.dox
deleted file mode 100644
index fb21dbba85..0000000000
--- a/Utilities/IpFunc/ipFunc.dox
+++ /dev/null
@@ -1,408 +0,0 @@
-# Doxyfile 0.49-990829
-
-# This file describes the settings to be used by doxygen for a project
-#
-# All text after a hash (#) is considered a comment and will be ignored
-# The format is:
-# TAG = value [value, ...]
-# Values that contain spaces should be placed between quotes (" ")
-
-#---------------------------------------------------------------------------
-# General configuration options
-#---------------------------------------------------------------------------
-
-# The PROJECT_NAME tag is a single word (or a sequence of word surrounded
-# by quotes) that should identify the project.
-
-PROJECT_NAME = ipFunc
-
-# The PROJECT_NUMBER tag can be used to enter a project or revision number.
-# This could be handy for archiving the generated documentation or
-# if some version control system is used.
-
-PROJECT_NUMBER = 0.6.0
-
-# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute)
-# base path where the generated documentation will be put.
-# If a relative path is entered, it will be relative to the location
-# where doxygen was started. If left blank the current directory will be used.
-
-OUTPUT_DIRECTORY = ../doc
-
-# The OUTPUT_LANGUAGE tag is used to specify the language in which all
-# documentation generated by doxygen is written. Doxygen will use this
-# information to generate all constant output in the proper language.
-# The default language is English, other supported languages are:
-# Dutch, French, Italian, Czech, Swedish, German and Japanese
-
-OUTPUT_LANGUAGE = English
-
-# The QUIET tag can be used to turn on/off the messages that are generated
-# by doxygen. Possible values are YES and NO. If left blank NO is used.
-
-QUIET = NO
-
-# The WARNINGS tag can be used to turn on/off the warning messages that are
-# generated by doxygen. Possible values are YES and NO. If left blank
-# NO is used.
-
-WARNINGS = YES
-
-# The DISABLE_INDEX tag can be used to turn on/off the condensed index at
-# top of each HTML page. The value NO (the default) enables the index and
-# the value YES disables it.
-
-DISABLE_INDEX = NO
-
-# If the EXTRACT_ALL tag is set to YES all classes and functions will be
-# included in the documentation, even if no documentation was available.
-
-EXTRACT_ALL = NO
-
-# If the EXTRACT_PRIVATE tag is set to YES all private members of a class
-# will be included in the documentation.
-
-EXTRACT_PRIVATE = NO
-
-# If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all
-# undocumented members inside documented classes or files.
-
-HIDE_UNDOC_MEMBERS = YES
-
-# If the HIDE_UNDOC_CLASSESS tag is set to YES, Doxygen will hide all
-# undocumented classes.
-
-HIDE_UNDOC_CLASSES = YES
-
-# If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will
-# include brief member descriptions after the members that are listed in
-# the file and class documentation (similar to JavaDoc).
-# Set to NO to disable this.
-
-BRIEF_MEMBER_DESC = YES
-
-# The INTERNAL_DOCS tag determines if documentation
-# that is typed after a \internal command is included. If the tag is set
-# to NO (the default) then the documentation will be excluded.
-# Set it to YES to include the internal documentation.
-
-INTERNAL_DOCS = NO
-
-# If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend
-# the brief description of a member or function before the detailed description.
-# Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
-# brief descriptions will be completely suppressed.
-
-REPEAT_BRIEF = YES
-
-# If the FULL_PATH_NAMES tag is set to YES Doxygen will prepend the full
-# path before files name in the file list and in the header files. If set
-# to NO the shortest path that makes the file name unique will be used.
-
-FULL_PATH_NAMES = NO
-
-# If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag
-# can be used to strip a user defined part of the path. Stripping is
-# only done if one of the specified strings matches the left-hand part of
-# the path.
-
-STRIP_FROM_PATH =
-
-# If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will
-# generate a class diagram (in Html and LaTeX) for classes with base or
-# super classes. Setting the tag to NO turns the diagrams off.
-
-CLASS_DIAGRAMS = YES
-
-# If the SOURCE_BROWSER tag is set to YES than the body of a member or
-# function will be appended as a block of code to the documentation of.
-# that member or function.
-
-SOURCE_BROWSER = NO
-
-# If the CASE_SENSE_NAMES tag is set to NO (the default) then Doxygen
-# will only generate file names in lower case letters. If set to
-# YES upper case letters are also allowed. This is useful if you have
-# classes or files whose names only differ in case and if your file system
-# supports case sensitive file names.
-
-CASE_SENSE_NAMES = NO
-
-# If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen
-# will generate a verbatim copy of the header file for each class for
-# which an include is specified. Set to NO to disable this.
-
-VERBATIM_HEADERS = NO
-
-# If the JAVADOC_NO_AUTOBRIEF is set to YES (the default) then Doxygen
-# will interpret the first line (until the first dot) of a JavaDoc-style
-# comment as the brief description. If set to NO, the Javadoc-style will
-# behave just like the Qt-style comments.
-
-JAVADOC_AUTOBRIEF = YES
-
-#---------------------------------------------------------------------------
-# configuration options related to the input files
-#---------------------------------------------------------------------------
-
-# The INPUT tag can be used to specify the files and/or directories that contain
-# documented source files. You may enter file names like "myfile.cpp" or
-# directories like "/usr/src/myproject". Separate the files or directories
-# with spaces.
-
-INPUT = . mitkIpFunc.h ipArithmeticAndLogical.h ipGeometrical.h ipLocal.h ipStatistical.h ipMorphological.h ipPointOperators.h ipAdministrative.h
-
-
-# If the value of the INPUT tag contains directories, you can use the
-# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
-# and *.h) to filter out the source-files in the directories. If left
-# blank all files are included.
-
-FILE_PATTERNS = *.c
-
-# The RECURSIVE tag can be used to turn specify whether or not subdirectories
-# should be searched for input files as well. Possible values are YES and NO.
-# If left blank NO is used.
-
-RECURSIVE = NO
-
-# The EXCLUDE tag can be used to specify files and/or directories that should
-# excluded from the INPUT source files. This way you can easily exclude a
-# subdirectory from a directory tree whose root is specified with the INPUT tag.
-
-EXCLUDE =
-
-# If the value of the INPUT tag contains directories, you can use the
-# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
-# certain files from those directories.
-
-EXCLUDE_PATTERNS =
-
-# The EXAMPLE_PATH tag can be used to specify one or more files or
-# directories that contain example code fragments that are included (see
-# the \include command).
-
-EXAMPLE_PATH =
-
-# The INPUT_FILTER tag can be used to specify a program that doxygen should
-# invoke to filter for each input file. Doxygen will invoke the filter program
-# by executing (via popen()) the command <filter> <input-file>, where <filter>
-# is the value of the INPUT_FILTER tag, and <input-file> is the name of an
-# input file. Doxygen will then use the output that the filter program writes
-# to standard output.
-
-INPUT_FILTER =
-
-#---------------------------------------------------------------------------
-# configuration options related to the HTML output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_HTML tag is set to YES (the default) Doxygen will
-# generate HTML output
-
-GENERATE_HTML = YES
-
-# The HTML_OUTPUT tag is used to specify where the HTML docs will be put.
-# If a relative path is entered the value of OUTPUT_DIRECTORY will be
-# put in front of it. If left blank `html' will be used as the default path.
-
-HTML_OUTPUT =
-
-# The HTML_HEADER tag can be used to specify a personal HTML header for
-# each generated HTML page. If it is left blank doxygen will generate a
-# standard header.
-
-HTML_HEADER =
-
-# The HTML_FOOTER tag can be used to specify a personal HTML footer for
-# each generated HTML page. If it is left blank doxygen will generate a
-# standard footer.
-
-HTML_FOOTER =
-
-# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes,
-# files or namespaces will be aligned in HTML using tables. If set to
-# NO a bullet list will be used.
-
-HTML_ALIGN_MEMBERS = YES
-
-# If the GENERATE_HTMLHELP tag is set to YES, additional index files
-# will be generated that can be used as input for tools like the
-# Microsoft HTML help workshop to generate a compressed HTML help file (.chm)
-# of the generated HTML documentation.
-
-GENERATE_HTMLHELP = NO
-
-# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index
-# of all compounds will be generated. Enable this if the project
-# contains a lot of classes, structs, unions or interfaces.
-
-ALPHABETICAL_INDEX = NO
-
-#---------------------------------------------------------------------------
-# configuration options related to the LaTeX output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will
-# generate Latex output.
-
-GENERATE_LATEX = NO
-
-# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put.
-# If a relative path is entered the value of OUTPUT_DIRECTORY will be
-# put in front of it. If left blank `latex' will be used as the default path.
-
-LATEX_OUTPUT =
-
-# If the COMPACT_LATEX tag is set to YES Doxygen generates more compact
-# LaTeX documents. This may be useful for small projects and may help to
-# save some trees in general.
-
-COMPACT_LATEX = NO
-
-# The PAPER_TYPE tag can be used to set the paper type that is used
-# by the printer. Possible values are: a4, a4wide, letter, legal and
-# executive. If left blank a4wide will be used.
-
-PAPER_TYPE = a4wide
-
-# The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX
-# packages that should be included in the LaTeX output.
-
-EXTRA_PACKAGES =
-
-#---------------------------------------------------------------------------
-# configuration options related to the RTF output
-#---------------------------------------------------------------------------
-
-GENERATE_RTF = NO
-
-#---------------------------------------------------------------------------
-# configuration options related to the man page output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_MAN tag is set to YES (the default) Doxygen will
-# generate man pages
-
-GENERATE_MAN = NO
-
-# The MAN_OUTPUT tag is used to specify where the man pages will be put.
-# If a relative path is entered the value of OUTPUT_DIRECTORY will be
-# put in front of it. If left blank `man' will be used as the default path.
-
-MAN_OUTPUT =
-
-# The MAN_EXTENSION tag determines the extension that is added to
-# the generated man pages (default is the subroutine's section .3)
-
-MAN_EXTENSION = .3
-
-#---------------------------------------------------------------------------
-# Configuration options related to the preprocessor
-#---------------------------------------------------------------------------
-
-# If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will
-# evaluate all C-preprocessor directives found in the sources and include
-# files.
-
-ENABLE_PREPROCESSING = YES
-
-# If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro
-# names in the source code. If set to NO (the default) only conditional
-# compilation will be performed.
-
-MACRO_EXPANSION = NO
-
-# If the SEARCH_INCLUDES tag is set to YES (the default) the includes files
-# in the INCLUDE_PATH (see below) will be search if a #include is found.
-
-SEARCH_INCLUDES = YES
-
-# The INCLUDE_PATH tag can be used to specify one or more directories that
-# contain include files that are not input files but should be processed by
-# the preprocessor.
-
-INCLUDE_PATH =
-
-# The PREDEFINED tag can be used to specify one or more macro names that
-# are defined before the preprocessor is started (similar to the -D option of
-# gcc). The argument of the tag is a list of macros of the form: name
-# or name=definition (no spaces). If the definition and the = are
-# omitted =1 is assumed.
-
-PREDEFINED = DOXYGEN_IGNORE
-
-# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES
-# then the macro expansion is limited to the macros specified with the
-# PREDEFINED tag.
-
-EXPAND_ONLY_PREDEF = NO
-
-#---------------------------------------------------------------------------
-# Configuration options related to external references
-#---------------------------------------------------------------------------
-
-# The TAGFILES tag can be used to specify one or more tagfiles.
-
-TAGFILES =
-
-# When a file name is specified after GENERATE_TAGFILE, doxygen will create
-# a tag file that is based on the input files it reads.
-
-GENERATE_TAGFILE =
-
-# If the ALLEXTERNALS tag is set to YES all external classes will be listed
-# in the class index. If set to NO only the inherited external classes
-# will be listed.
-
-ALLEXTERNALS = NO
-
-# The PERL_PATH should be the absolute path and name of the perl script
-# interpreter (i.e. the result of `which perl').
-
-PERL_PATH = /usr/bin/perl
-
-#---------------------------------------------------------------------------
-# Configuration options related to the search engine
-#---------------------------------------------------------------------------
-
-# The SEARCHENGINE tag specifies whether or not a search engine should be
-# used. If set to NO the values of all tags below this one will be ignored.
-
-SEARCHENGINE = NO
-
-# The CGI_NAME tag should be the name of the CGI script that
-# starts the search engine (doxysearch) with the correct parameters.
-# A script with this name will be generated by doxygen.
-
-CGI_NAME = search.cgi
-
-# The CGI_URL tag should be the absolute URL to the directory where the
-# cgi binaries are located. See the documentation of your http daemon for
-# details.
-
-CGI_URL =
-
-# The DOC_URL tag should be the absolute URL to the directory where the
-# documentation is located. If left blank the absolute path to the
-# documentation, with file:// prepended to it, will be used.
-
-DOC_URL =
-
-# The DOC_ABSPATH tag should be the absolute path to the directory where the
-# documentation is located. If left blank the directory on the local machine
-# will be used.
-
-DOC_ABSPATH =
-
-# The BIN_ABSPATH tag must point to the directory where the doxysearch binary
-# is installed.
-
-BIN_ABSPATH = /usr/local/bin/
-
-# The EXT_DOC_PATHS tag can be used to specify one or more paths to
-# documentation generated for other projects. This allows doxysearch to search
-# the documentation for these projects as well.
-
-EXT_DOC_PATHS =
-
diff --git a/Utilities/IpFunc/ipGeometrical.h b/Utilities/IpFunc/ipGeometrical.h
deleted file mode 100644
index 2ce7016844..0000000000
--- a/Utilities/IpFunc/ipGeometrical.h
+++ /dev/null
@@ -1,117 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * Geometrical Operators.
- * This header is for grouping purposes for the
- * documentation only. Don't use it, use mitkIpFunc.h instead.
- */
-
-#ifndef DOXYGEN_IGNORE
-#include <mitkIpFunc.h>
-#endif
-
-#ifndef _mitkIpFunc_h
-#define _mitkIpFunc_h
-
-/* function prototypes */
-
-#if defined(__cplusplus) || defined(c_plusplus)
-extern "C" {
-#endif
-
-mitkIpUInt4_t mitkIpFuncBox ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t **beg,
- mitkIpUInt4_t **end );
-
-mitkIpPicDescriptor *mitkIpFuncRefl ( mitkIpPicDescriptor *pic_old,
- mitkIpInt4_t axis );
-
-mitkIpPicDescriptor *mitkIpFuncFrame ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *edge,
- mitkIpFloat8_t value );
-
-mitkIpPicDescriptor *mitkIpFuncBorder ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *mask,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncBorderX ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *mask,
- mitkIpFloat8_t value,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncScale ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t sc_fact[_mitkIpPicNDIM],
- mitkIpFuncFlagI_t sc_kind );
-
-mitkIpPicDescriptor *mitkIpFuncScFact ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t factor,
- mitkIpFuncFlagI_t sc_kind );
-
-mitkIpPicDescriptor *mitkIpFuncWindow ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-mitkIpPicDescriptor *mitkIpFuncWindowR( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpUInt4_t *begin,
- mitkIpFuncFlagI_t keep );
-
-mitkIpPicDescriptor *mitkIpFuncRotate ( mitkIpPicDescriptor *pic,
- mitkIpPicDescriptor *pic_old,
- int *grad, int *order );
-
-mitkIpPicDescriptor *mitkIpFuncTranspose( mitkIpPicDescriptor *pic,
- mitkIpPicDescriptor *pic_old,
- int *permutations_vector);
-
-mitkIpPicDescriptor *mitkIpFuncDrawPoly( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts );
-
-#if defined(__cplusplus) || defined(c_plusplus)
-}
-#endif
-
-
-#endif /* _mitkIpFunc_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
-
diff --git a/Utilities/IpFunc/ipGetANew.c b/Utilities/IpFunc/ipGetANew.c
deleted file mode 100644
index 4bb0c2b504..0000000000
--- a/Utilities/IpFunc/ipGetANew.c
+++ /dev/null
@@ -1,56 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-#include "mitkIpFuncP.h"
-
-mitkIpUInt4_t _ipGetANew( mitkIpUInt4_t aNew[], mitkIpUInt4_t Index)
-{
-mitkIpUInt4_t NewIndex;
-
- /* return original Index */
- if (aNew[Index] == Index) return (Index);
-
- for (;;)
- {
- NewIndex = aNew[Index];
- if (NewIndex == aNew[NewIndex]) return(NewIndex);
- Index = NewIndex;
- }
-}
diff --git a/Utilities/IpFunc/ipLocal.h b/Utilities/IpFunc/ipLocal.h
deleted file mode 100644
index 3c778e7398..0000000000
--- a/Utilities/IpFunc/ipLocal.h
+++ /dev/null
@@ -1,114 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * Local Operators.
- * This header is for grouping purposes for the
- * documentation only. Don't use it, use mitkIpFunc.h instead.
- */
-
-#ifndef DOXYGEN_IGNORE
-#include <mitkIpFunc.h>
-#endif
-
-#ifndef _mitkIpFunc_h
-#define _mitkIpFunc_h
-
-/* function prototypes */
-
-#if defined(__cplusplus) || defined(c_plusplus)
-extern "C" {
-#endif
-
-mitkIpPicDescriptor *mitkIpFuncConv ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncGausF ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t len_mask,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncCanny ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpUInt4_t len_mask,
- mitkIpFloat8_t threshold,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncRank ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t rank,
- mitkIpUInt4_t dim_mask,
- mitkIpUInt4_t len_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncMeanF ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t len_mask,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncShp ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border,
- mitkIpUInt4_t mask_nr );
-
-mitkIpPicDescriptor *mitkIpFuncLaplace( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncSobel ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncGrad ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncRoberts( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-#if defined(__cplusplus) || defined(c_plusplus)
-}
-#endif
-
-
-#endif /* _mitkIpFunc_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
-
diff --git a/Utilities/IpFunc/ipMorphological.h b/Utilities/IpFunc/ipMorphological.h
deleted file mode 100644
index 697d84cf8c..0000000000
--- a/Utilities/IpFunc/ipMorphological.h
+++ /dev/null
@@ -1,104 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * Morphological Operators.
- * This header is for grouping purposes for the
- * documentation only. Don't use it, use mitkIpFunc.h instead.
- */
-
-#ifndef DOXYGEN_IGNORE
-#include <mitkIpFunc.h>
-#endif
-
-#ifndef _mitkIpFunc_h
-#define _mitkIpFunc_h
-
-/* function prototypes */
-
-#if defined(__cplusplus) || defined(c_plusplus)
-extern "C" {
-#endif
-
-mitkIpPicDescriptor *mitkIpFuncEro ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncDila ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncOpen ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncClose ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncHitMiss( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_masks,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncLabel ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *no_label );
-
-mitkIpPicDescriptor *mitkIpFuncRegGrow ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_seed,
- mitkIpUInt4_t *beg_seed,
- mitkIpUInt4_t *end_seed,
- mitkIpUInt4_t border_label,
- mitkIpUInt4_t region_label,
- mitkIpFloat8_t std_fact,
- mitkIpUInt4_t kind );
-
-mitkIpPicDescriptor *mitkIpFuncDrawPoly( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts );
-
-#if defined(__cplusplus) || defined(c_plusplus)
-}
-#endif
-
-
-#endif /* _mitkIpFunc_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
-
diff --git a/Utilities/IpFunc/ipPointOperators.h b/Utilities/IpFunc/ipPointOperators.h
deleted file mode 100644
index 6971f809ad..0000000000
--- a/Utilities/IpFunc/ipPointOperators.h
+++ /dev/null
@@ -1,135 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * Point-Operators.
- * This header is for grouping purposes for the
- * documentation only. Don't use it, use mitkIpFunc.h instead.
- */
-
-#ifndef DOXYGEN_IGNORE
-#include <mitkIpFunc.h>
-#endif
-
-#ifndef _mitkIpFunc_h
-#define _mitkIpFunc_h
-
-/* function prototypes */
-
-#if defined(__cplusplus) || defined(c_plusplus)
-extern "C" {
-#endif
-
-mitkIpPicDescriptor *mitkIpFuncInv ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncEqual ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t kind,
- mitkIpPicDescriptor *pic_return );
-
-
-mitkIpPicDescriptor *mitkIpFuncPot ( mitkIpPicDescriptor *pic_1,
- mitkIpFloat8_t exponent,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncSqrt ( mitkIpPicDescriptor *pic_1,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncThresh ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t threshold,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncZeroCr ( mitkIpPicDescriptor *pic_old );
-
-mitkIpPicDescriptor *mitkIpFuncExp ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t kind,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncLN ( mitkIpPicDescriptor *pic_old );
-
-mitkIpPicDescriptor *mitkIpFuncLog ( mitkIpPicDescriptor *pic_old );
-
-mitkIpPicDescriptor *mitkIpFuncNorm ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncNormXY ( mitkIpPicDescriptor *pic,
- mitkIpFloat8_t min_gv,
- mitkIpFloat8_t max_gv,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncSelInv ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up,
- mitkIpFloat8_t gv,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncSelect ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up,
- mitkIpFloat8_t gv,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncSelMM ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncLevWin ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t level,
- mitkIpFloat8_t window,
- mitkIpPicDescriptor *pic_return );
-
-void mitkIpFuncXchange ( mitkIpPicDescriptor **pic1,
- mitkIpPicDescriptor **pic2 );
-
-mitkIpPicDescriptor *mitkIpFuncConvert( mitkIpPicDescriptor *pic_old,
- mitkIpPicType_t type,
- mitkIpUInt4_t bpe );
-
-#if defined(__cplusplus) || defined(c_plusplus)
-}
-#endif
-
-
-#endif /* _mitkIpFunc_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
-
diff --git a/Utilities/IpFunc/ipStatistical.h b/Utilities/IpFunc/ipStatistical.h
deleted file mode 100644
index 847d51a9a8..0000000000
--- a/Utilities/IpFunc/ipStatistical.h
+++ /dev/null
@@ -1,169 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * Operators to calculate statistical values.
- * This header is for grouping purposes for the
- * documentation only. Don't use it, use mitkIpFunc.h instead.
- */
-
-#ifndef DOXYGEN_IGNORE
-#include <mitkIpFunc.h>
-#endif
-
-#ifndef _mitkIpFunc_h
-#define _mitkIpFunc_h
-
-/* function prototypes */
-
-#if defined(__cplusplus) || defined(c_plusplus)
-extern "C" {
-#endif
-
-mitkIpUInt4_t mitkIpFuncBox ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t **beg,
- mitkIpUInt4_t **end );
-
-mitkIpFloat8_t mitkIpFuncMedI ( mitkIpPicDescriptor *pic_old );
-
-mitkIpFloat8_t mitkIpFuncMean ( mitkIpPicDescriptor *pic_old );
-
-mitkIpFloat8_t mitkIpFuncVar ( mitkIpPicDescriptor *pic_old );
-
-mitkIpFloat8_t mitkIpFuncSDev ( mitkIpPicDescriptor *pic_old );
-
-mitkIpFloat8_t *mitkIpFuncGrav ( mitkIpPicDescriptor *pic_old );
-
-mitkIpFloat8_t mitkIpFuncMeanC ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t radius );
-
-mitkIpFloat8_t mitkIpFuncVarC ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t radius );
-
-mitkIpFloat8_t mitkIpFuncSDevC ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t radius );
-
-mitkIpUInt4_t mitkIpFuncExtrC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max,
- mitkIpUInt4_t *center,
- mitkIpUInt4_t radius );
-
-mitkIpFloat8_t mitkIpFuncMeanROI( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts );
-
-mitkIpFloat8_t mitkIpFuncVarROI( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts );
-
-mitkIpFloat8_t mitkIpFuncSDevROI( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts );
-
-mitkIpFloat8_t mitkIpFuncSkewness ( mitkIpPicDescriptor *pic );
-
-mitkIpFloat8_t mitkIpFuncCurtosis ( mitkIpPicDescriptor *pic );
-
-mitkIpFloat8_t mitkIpFuncSkewnessR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-double mitkIpFuncCurtosisR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-mitkIpUInt4_t mitkIpFuncExtrROI( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts );
-
-mitkIpFloat8_t mitkIpFuncMeanR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-mitkIpFloat8_t mitkIpFuncVarR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-mitkIpFloat8_t mitkIpFuncSDevR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-mitkIpUInt4_t mitkIpFuncExtrR ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-mitkIpUInt4_t mitkIpFuncRange ( mitkIpPicDescriptor *pic,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up );
-
-mitkIpInt4_t mitkIpFuncExtr ( mitkIpPicDescriptor *pic,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max );
-
-mitkIpInt4_t mitkIpFuncInertia ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t **eigen_vect,
- mitkIpFloat8_t **eigen_val );
-
-mitkIpInt4_t mitkIpFuncHist ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t min_gv,
- mitkIpFloat8_t max_gv,
- mitkIpUInt4_t **hist,
- mitkIpUInt4_t *size_hist );
-
-#if defined(__cplusplus) || defined(c_plusplus)
-}
-#endif
-
-
-#endif /* _mitkIpFunc_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
-
diff --git a/Utilities/IpFunc/mitkIpFunc.h b/Utilities/IpFunc/mitkIpFunc.h
deleted file mode 100644
index cec8e1266c..0000000000
--- a/Utilities/IpFunc/mitkIpFunc.h
+++ /dev/null
@@ -1,581 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * contains the function prototypes, type definitions and
- * includes for the image processing functions
- */
-
-/** @mainpage
- * @section QuickReference Quick Reference
- *
- * @link mitkIpFunc.h List of all functions @endlink
- *
- * @link ipArithmeticAndLogical.h Arithmetic and Logical Operators @endlink
- *
- * @link ipGeometrical.h Geometrical Operators @endlink
- *
- * @link ipLocal.h Local Operators @endlink
- *
- * @link ipStatistical.h Operators to calculate statistical values @endlink
- *
- * @link ipMorphological.h Morphological Operators @endlink
- *
- * @link ipPointOperators.h Point-Operators @endlink
- *
- * @link ipAdministrative.h Administrative Functions @endlink
-
- * @section Introduction Introduction
- *
- * This library contains a huge set of image processing functions. It includes
- * operators of the following classes:
- * @arg Arithmetical and logical operators. This class contains as well functions
- * to add, subtract, divide or multiply two images or images and constants
- * as functions to connect two images using the logical "and" or "or" operator.
- * @arg Operators to transform the greyvalue of each pixel indepently of its surrounding
- * pixels. In this class operators for brightness correction, contrast
- * correction or to fade out single greyvalues are included
- * @arg Local operators which use the surrounding pixel for the transformation.
- * This could be a convolution or a filtering operation to detect edges or to
- * perform a smoothing.
- * @arg Geometrical functions which change the geometrie of the image like a
- * rotation, a reflection, a transposition or a scaling.
- * @arg Operators to calculate statistical values. The extreme greyvalues, the
- * mean, the variance or the standard deviation of all greyvalues in an image
- * or a region of interest (rectangle, circle or an area included by a polygon)
- * are calculated.
- * @arg Segmentation functions to find objects in an image.
- * @arg Morphological operators which change the shape of the the objects
- * shown in an image. This could be a dilation, an erosion, an opening or a
- * closing.
- * All images and convolution masks needed in theses functions have to be stored
- * in the PIC image format. Because this image format allows to handle images of
- * different datatypes and images of up to eight dimensions, the functions could
- * be used to transform all these different kind of images.
- *
- * There's also an executable included to invoke the image processing functions from the
- * command line.
- *
- * @section Installation Installation
- * @subsection PlatformIndependent Platform Independent
- * There is a platform independent tmake-makefile called ipFunc.pro. You need to get
- * the free tmake-utility to use it from @htmlonly <a href="ftp://ftp.troll.no/freebies/tmake/
-"> ftp://ftp.troll.no/freebies/tmake/ </a> @endhtmlonly.
- *
- * @subsection Windows Windows
- * The library as well as the executable are precomiled using the Microsoft Developer Studio 6.0:
- * libipFuncD.lib and ipFunc.exe. The corresponding project file is ipFunc.dsw.
- *
- * @subsection Unix Unix
- * There is a makefile, which should work on most unix platforms. There is also a special
- * makefile for Sun Solaris.
-*/
-
-#ifndef _mitkIpFunc_h
-#define _mitkIpFunc_h
-
-/* include files */
-
-#include <limits.h>
-#include <math.h>
-#include <stdio.h>
-#include <string.h>
-#include <stdlib.h>
-#ifdef _WIN32
-#include <time.h>
-#include <sys/timeb.h>
-#else
-#include <float.h>
-#include <sys/time.h>
-#include <sys/resource.h>
-#endif
-#include <mitkIpPic.h>
-/*
- Diese Datei wird in der mitkIpFuncP.h includet
- #include <meschach/matrix2.h>
-*/
-#ifndef M_PI
-#define M_PI 3.14159265358979323846
-#endif
-
-/* definition of constants */
-
-#define mitkIpFuncERROR 0
-#define mitkIpFuncOK 1
-#define mitkIpFuncNOPIC_ERROR 2
-#define mitkIpFuncDIM_ERROR 3
-#define mitkIpFuncSIZE_ERROR 4
-#define mitkIpFuncFLAG_ERROR 5
-#define mitkIpFuncMALLOC_ERROR 6
-#define mitkIpFuncPICNEW_ERROR 7
-#define mitkIpFuncTYPE_ERROR 8
-#define mitkIpFuncUNFIT_ERROR 9
-#define mitkIpFuncDIMMASC_ERROR 10
-#define mitkIpFuncDATA_ERROR 11
-#define mitkIpFunc_ERROR 12
-#define mitkIpERO 0
-#define mitkIpDILA 1
-#define mitkIpOPEN 0
-#define mitkIpCLOSE 1
-#define mitkIpREFLECT 0
-#define mitkIpNOREFLECT 1
-#define mitkIpOVERWRITE 1
-
-/* type definitions */
-
-typedef enum /* mitkIpFuncFlagI_t */
- {
- mitkIpFuncReflect = 0,
- mitkIpFuncNoReflect = 1,
- mitkIpFuncBorderZero = 2,
- mitkIpFuncBorderOld = 3,
- mitkIpFuncKeep = 4,
- mitkIpFuncNoKeep = 5,
- mitkIpFuncScaleBl = 6,
- mitkIpFuncScaleNN = 7,
- mitkIpFuncTotal = 8,
- mitkIpFuncMinMax = 9,
- mitkIpFuncAbove = 10,
- mitkIpFuncBeneath = 11,
- mitkIpFuncFlagI_MAX
- } mitkIpFuncFlagI_t;
-
-typedef struct
- {
- mitkIpUInt4_t x0;
- mitkIpUInt4_t x1;
- mitkIpUInt4_t y0;
- mitkIpUInt4_t y1;
- mitkIpUInt4_t z0;
- mitkIpUInt4_t z1;
- } mitkIpFuncBox_t;
-
-
-/* macros */
-#define IPFUNCMAX( x, y ) ( ( (x) > (y) ) ? (x) : (y) )
-#define IPFUNCMIN( x, y ) ( ( (x) < (y) ) ? (x) : (y) )
-
-#if defined(__cplusplus) || defined(c_plusplus)
-extern "C" {
-#endif
-/* extern gloabal variables */
-
-extern int mitkIpFuncErrno;
-
-
-/* function prototypes */
-
-mitkIpUInt4_t mitkIpFuncBox ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t **beg,
- mitkIpUInt4_t **end );
-
-mitkIpPicDescriptor *mitkIpFuncConvert( mitkIpPicDescriptor *pic_old,
- mitkIpPicType_t type,
- mitkIpUInt4_t bpe );
-
-void mitkIpFuncCopyTags(mitkIpPicDescriptor *pic_new, mitkIpPicDescriptor *pic_old);
-
-int mitkIpFuncSetTag( mitkIpPicDescriptor *pic, char *name, int type, int size,
- int el_size, void *data );
-
-mitkIpPicDescriptor *mitkIpFuncInv ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncEqual ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t kind,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncRefl ( mitkIpPicDescriptor *pic_old,
- mitkIpInt4_t axis );
-
-mitkIpFloat8_t mitkIpFuncMedI ( mitkIpPicDescriptor *pic_old );
-
-mitkIpFloat8_t mitkIpFuncMean ( mitkIpPicDescriptor *pic_old );
-
-mitkIpFloat8_t mitkIpFuncVar ( mitkIpPicDescriptor *pic_old );
-
-mitkIpFloat8_t mitkIpFuncSDev ( mitkIpPicDescriptor *pic_old );
-
-mitkIpFloat8_t *mitkIpFuncGrav ( mitkIpPicDescriptor *pic_old );
-
-mitkIpFloat8_t mitkIpFuncMeanC ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t radius );
-
-mitkIpFloat8_t mitkIpFuncVarC ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t radius );
-
-mitkIpFloat8_t mitkIpFuncSDevC ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t radius );
-
-mitkIpUInt4_t mitkIpFuncExtrC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max,
- mitkIpUInt4_t *center,
- mitkIpUInt4_t radius );
-
-mitkIpPicDescriptor *mitkIpFuncDrawPoly( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts );
-
-mitkIpFloat8_t mitkIpFuncMeanROI( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts );
-
-mitkIpFloat8_t mitkIpFuncVarROI( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts );
-
-mitkIpFloat8_t mitkIpFuncSDevROI( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts );
-
-mitkIpUInt4_t mitkIpFuncExtrROI( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts );
-
-mitkIpFloat8_t mitkIpFuncMeanR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-mitkIpFloat8_t mitkIpFuncVarR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-mitkIpFloat8_t mitkIpFuncSDevR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-mitkIpUInt4_t mitkIpFuncExtrR ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-mitkIpPicDescriptor *mitkIpFuncFrame ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *edge,
- mitkIpFloat8_t value );
-
-mitkIpPicDescriptor *mitkIpFuncBorder ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *mask,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncBorderX ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *mask,
- mitkIpFloat8_t value,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncAddC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncSubC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncMultC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncDivC ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncMultI ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncDivI ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncAddI ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncAddSl ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t keep );
-
-mitkIpPicDescriptor *mitkIpFuncSubI ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncPot ( mitkIpPicDescriptor *pic_1,
- mitkIpFloat8_t exponent,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncSqrt ( mitkIpPicDescriptor *pic_1,
- mitkIpFuncFlagI_t keep,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncAnd ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncOr ( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncNot ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncLabel ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *no_label );
-
-mitkIpPicDescriptor *mitkIpFuncThresh ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t threshold,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncConv ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncEro ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncDila ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncOpen ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncClose ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncHitMiss( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_masks,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncScale ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t sc_fact[_mitkIpPicNDIM],
- mitkIpFuncFlagI_t sc_kind );
-
-mitkIpPicDescriptor *mitkIpFuncScFact ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t factor,
- mitkIpFuncFlagI_t sc_kind );
-
-mitkIpPicDescriptor *mitkIpFuncGausF ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t len_mask,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncCanny ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpUInt4_t len_mask,
- mitkIpFloat8_t threshold,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncRank ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t rank,
- mitkIpUInt4_t dim_mask,
- mitkIpUInt4_t len_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncMeanF ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t len_mask,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncShp ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border,
- mitkIpUInt4_t mask_nr );
-
-mitkIpPicDescriptor *mitkIpFuncLaplace( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncSobel ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncGrad ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncRoberts( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_mask,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *mitkIpFuncZeroCr ( mitkIpPicDescriptor *pic_old );
-
-mitkIpPicDescriptor *mitkIpFuncExp ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t kind,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncLN ( mitkIpPicDescriptor *pic_old );
-
-mitkIpPicDescriptor *mitkIpFuncLog ( mitkIpPicDescriptor *pic_old );
-
-mitkIpPicDescriptor *mitkIpFuncNorm ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncNormXY ( mitkIpPicDescriptor *pic,
- mitkIpFloat8_t min_gv,
- mitkIpFloat8_t max_gv,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpUInt4_t mitkIpFuncRange ( mitkIpPicDescriptor *pic,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up );
-
-mitkIpInt4_t mitkIpFuncExtr ( mitkIpPicDescriptor *pic,
- mitkIpFloat8_t *min,
- mitkIpFloat8_t *max );
-
-mitkIpInt4_t mitkIpFuncInertia ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t **eigen_vect,
- mitkIpFloat8_t **eigen_val );
-
-mitkIpInt4_t mitkIpFuncHist ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t min_gv,
- mitkIpFloat8_t max_gv,
- mitkIpUInt4_t **hist,
- mitkIpUInt4_t *size_hist );
-
-mitkIpInt4_t mitkIpFuncHisto ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t *min_gv,
- mitkIpFloat8_t *max_gv,
- mitkIpUInt4_t **hist,
- mitkIpUInt4_t *size_hist );
-
-mitkIpPicDescriptor *mitkIpFuncSelInv ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up,
- mitkIpFloat8_t gv,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncSelect ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up,
- mitkIpFloat8_t gv,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncSelMM ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t gv_low,
- mitkIpFloat8_t gv_up,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncLevWin ( mitkIpPicDescriptor *pic_old,
- mitkIpFloat8_t level,
- mitkIpFloat8_t window,
- mitkIpPicDescriptor *pic_return );
-
-mitkIpPicDescriptor *mitkIpFuncWindow ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-mitkIpPicDescriptor *mitkIpFuncWindowR( mitkIpPicDescriptor *pic_1,
- mitkIpPicDescriptor *pic_2,
- mitkIpUInt4_t *begin,
- mitkIpFuncFlagI_t keep );
-
-
-mitkIpPicDescriptor *mitkIpFuncRegGrow ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t dim_seed,
- mitkIpUInt4_t *beg_seed,
- mitkIpUInt4_t *end_seed,
- mitkIpUInt4_t border_label,
- mitkIpUInt4_t region_label,
- mitkIpFloat8_t std_fact,
- mitkIpUInt4_t kind );
-
-void mitkIpFuncPError ( char *string );
-
-mitkIpPicDescriptor *mitkIpFuncRotate ( mitkIpPicDescriptor *pic,
- mitkIpPicDescriptor *pic_old,
- int *grad, int *order );
-
-mitkIpPicDescriptor *mitkIpFuncTranspose( mitkIpPicDescriptor *pic,
- mitkIpPicDescriptor *pic_old,
- int *permutations_vector);
-
-void mitkIpFuncXchange ( mitkIpPicDescriptor **pic1,
- mitkIpPicDescriptor **pic2 );
-
-mitkIpFloat8_t mitkIpFuncSkewness ( mitkIpPicDescriptor *pic );
-mitkIpFloat8_t mitkIpFuncCurtosis ( mitkIpPicDescriptor *pic );
-
-mitkIpFloat8_t mitkIpFuncSkewnessR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-double mitkIpFuncCurtosisR ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *begin,
- mitkIpUInt4_t *length );
-
-mitkIpPicDescriptor *mitkIpFuncFillArea ( mitkIpPicDescriptor *pic_old,
- mitkIpFuncBox_t box,
- mitkIpFloat8_t value,
- mitkIpFuncFlagI_t over,
- mitkIpPicDescriptor *pic_return );
-
-char *mitkIpFuncMakePicName ( char *pic_name, char *extension );
-
-#if defined(__cplusplus) || defined(c_plusplus)
-}
-#endif
-
-
-#endif /* _mitkIpFunc_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
-
diff --git a/Utilities/IpFunc/mitkIpFuncP.h b/Utilities/IpFunc/mitkIpFuncP.h
deleted file mode 100644
index 63f5a57a7a..0000000000
--- a/Utilities/IpFunc/mitkIpFuncP.h
+++ /dev/null
@@ -1,191 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * mitkIpFuncP.h
- *---------------------------------------------------------------
- * DESCRIPTION
- * contains the function prototypes, type definitions and
- * includes for the image processing functions
- *
- * AUTHOR
- * Antje Schroeder
- *
- * UPDATES
- *
- *---------------------------------------------------------------
- *
- */
-
-
-#ifndef _mitkIpFuncP_h
-#define _mitkIpFuncP_h
-
-/* include files */
-
-#include "mitkIpFunc.h"
-
-/* type definitions */
-
-typedef enum
- {
- mitkIpFuncEroF = 0,
- mitkIpFuncDilaF = 1,
- mitkIpFuncOpenF = 2,
- mitkIpFuncCloseF = 3,
- mitkIpFuncFlagF_MAX
- } _mitkIpFuncFlagF_t;
-
-typedef struct
- {
- mitkIpUInt4_t length;
- mitkIpInt4_t *off_vekt;
- mitkIpFloat8_t *mask_vekt;
- } mitkIpFuncMasc_t;
-
-/* definition of macros */
-
-#define mitkIpFuncCASE_FOR( pic, dim, mitkIpFuncSourceIndex )\
- case dim: for( mitkIpFuncSourceIndex[dim-1]=0; \
- mitkIpFuncSourceIndex[dim-1] < pic->n[dim-1]; \
- mitkIpFuncSourceIndex[dim-1]++ \
- )
-
-#define mitkIpFuncFORALL( type, pic, pic_return, \
- mitkIpFuncSourceIndex, mitkIpFuncResultOffset, mitkIpFuncResultFunction )\
- {\
- mitkIpUInt4_t mitkIpFuncSourceOffset=0;\
- mitkIpUInt4_t i;\
- for( i=0; i<_mitkIpPicNDIM; i++) index[i] = 0;\
- for( i=pic->dim; i<_mitkIpPicNDIM; i++) pic->n[i] = 0;\
- for( i=pic_return->dim; i<_mitkIpPicNDIM; i++) pic_return->n[i] = 0;\
- switch( pic->dim )\
- {\
- default:\
- { \
- fprintf( stderr,\
- "sorry, only 1 to 8 dimensional data are supported.\n"); \
- pic_return = NULL;\
- break;\
- }\
- mitkIpFuncCASE_FOR( pic, 8, mitkIpFuncSourceIndex )\
- mitkIpFuncCASE_FOR( pic, 7, mitkIpFuncSourceIndex )\
- mitkIpFuncCASE_FOR( pic, 6, mitkIpFuncSourceIndex )\
- mitkIpFuncCASE_FOR( pic, 5, mitkIpFuncSourceIndex )\
- mitkIpFuncCASE_FOR( pic, 4, mitkIpFuncSourceIndex )\
- mitkIpFuncCASE_FOR( pic, 3, mitkIpFuncSourceIndex )\
- mitkIpFuncCASE_FOR( pic, 2, mitkIpFuncSourceIndex )\
- mitkIpFuncCASE_FOR( pic, 1, mitkIpFuncSourceIndex )\
- {\
- mitkIpFuncResultFunction;\
- ((type *)pic_return->data)[ mitkIpFuncResultOffset ] \
- = ((type *)pic->data)[ mitkIpFuncSourceOffset ] ; \
- mitkIpFuncSourceOffset++;\
- }\
- }\
- }
-
-
-/* function prototypes */
-
-
-mitkIpUInt4_t _mitkIpFuncBox2d ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t **beg,
- mitkIpUInt4_t **end );
-
-mitkIpUInt4_t _mitkIpFuncBox3d ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t **beg,
- mitkIpUInt4_t **end );
-
-mitkIpUInt4_t _mitkIpFuncError ( mitkIpPicDescriptor *pic );
-
-mitkIpPicDescriptor *_mitkIpFuncDrawPoly( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *pol_x,
- mitkIpUInt4_t *pol_y,
- mitkIpUInt4_t no_pts,
- mitkIpFloat8_t *a,
- mitkIpFloat8_t *b );
-
-mitkIpPicDescriptor *_mitkIpFuncOpCl ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- _mitkIpFuncFlagF_t kind,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *_mitkIpFuncMorph ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_mask,
- _mitkIpFuncFlagF_t kind,
- mitkIpFuncFlagI_t border );
-
-mitkIpFuncMasc_t *_mitkIpFuncCompressM ( mitkIpPicDescriptor *mask,
- mitkIpPicDescriptor *pic_old,
- mitkIpFuncFlagI_t kind,
- mitkIpInt4_t beg[_mitkIpPicNDIM],
- mitkIpInt4_t end[_mitkIpPicNDIM] );
-
-mitkIpInt4_t _mitkIpFuncExtT ( mitkIpPicType_t type,
- mitkIpUInt4_t bpe,
- mitkIpFloat8_t *min_gv,
- mitkIpFloat8_t *max_gv );
-
-
-mitkIpPicDescriptor *_mitkIpFuncScNN ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new );
-
-mitkIpPicDescriptor *_mitkIpFuncScBL ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new );
-
-mitkIpPicDescriptor *_mitkIpFuncHitMissI( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_masks,
- mitkIpFuncFlagI_t border );
-
-mitkIpPicDescriptor *_mitkIpFuncBorderX ( mitkIpPicDescriptor *pic_old,
- mitkIpUInt4_t *edge,
- mitkIpFloat8_t value );
-
-void _mitkIpFuncSetErrno( int error_no );
-
-mitkIpUInt4_t _ipGetANew( mitkIpUInt4_t aNew[], mitkIpUInt4_t Index );
-
-mitkIpPicDescriptor *_mitkIpFuncMalloc ( mitkIpPicDescriptor *pic_old,
- mitkIpPicDescriptor *pic_new,
- mitkIpBool_t over_write );
-#endif /* _mitkIpFuncP_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
diff --git a/Utilities/IpPic/CMakeLists.txt b/Utilities/IpPic/CMakeLists.txt
deleted file mode 100644
index 718ec78ce8..0000000000
--- a/Utilities/IpPic/CMakeLists.txt
+++ /dev/null
@@ -1,14 +0,0 @@
-set(_options NO_INIT GCC_DEFAULT_VISIBILITY)
-
-if(MITK_WIN32_FORCE_STATIC)
- list(APPEND _options FORCE_STATIC)
-endif()
-
-mitk_create_module(
- C_MODULE
- WARNINGS_NO_ERRORS
- ${_options}
- PACKAGE_DEPENDS PRIVATE ITK|ZLIB
-)
-
-target_compile_definitions(${MODULE_TARGET} PRIVATE -DMITK_IPPIC_COMPILE)
diff --git a/Utilities/IpPic/ChangeLog b/Utilities/IpPic/ChangeLog
deleted file mode 100755
index 6a887158eb..0000000000
--- a/Utilities/IpPic/ChangeLog
+++ /dev/null
@@ -1,23 +0,0 @@
-Tue Sep 16 09:03:36 1997 Andre Schroeter <andre@happy>
-
- * ipPic:
- moved encryption to sepperate branch
-
-Fri Sep 12 09:02:34 1997 Andre Schroeter <andre@timor.dkfz-heidelberg.de>
-
- * mitkIpPicClone.c:
- now can also clone if pic->data is NULL
-
-Sat Sep 6 21:28:48 1997 Andre Schroeter <andre@happy>
-
- * mitkIpPicPut.c (mitkIpPicPut):
- now with return value
-
- * mitkIpPicGet.c (_mitkIpPicReadTags):
- new parameter: encryption_type
-
- * mitkIpPicPut.c (_mitkIpPicWriteTags):
- new parameter: encryption_type
-
- * mitkIpPic.h (mitkIpPicVersionEncryption):
- new macro to check for encryption type
diff --git a/Utilities/IpPic/annotation/Annotation.c b/Utilities/IpPic/annotation/Annotation.c
deleted file mode 100755
index be51797736..0000000000
--- a/Utilities/IpPic/annotation/Annotation.c
+++ /dev/null
@@ -1,418 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
- * Annotation.c
- *---------------------------------------------------------------
- * DESCRIPTION
- * the annotation widget methods
- *
- * Author
- * a.schroeter
- *
- *---------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)XipAnnotationWidget\tGerman Cancer Research Center (DKFZ)\t1993/09/17" };
-#endif
-
-
-#include <X11/StringDefs.h>
-#include <X11/cursorfont.h>
-
-#include "AnnotationP.h"
-#include "icon_text.xbm"
-
-#ifdef SHAPE
-#include <X11/extensions/shape.h>
-#endif
-
-static void Initialize();
-static void Realize();
-static void Redisplay();
-static void Resize();
-static XtGeometryResult QueryGeometry();
-static void Destroy();
-static Boolean SetValues();
-
-static void activate();
-
-static void getDrawGC();
-
-
-static XtResource resources[] =
-{
- { XipNactivateCallback, XtCCallback, XtRCallback,
- sizeof(XtPointer),
- XtOffset (XipAnnotationWidget, annotation.activate_CB),
- XtRCallback, NULL },
-
- /* change parent class defaults */
- { XmNtopShadowColor, XmCTopShadowColor, XmRPixel,
- sizeof(Pixel),
- XtOffset(XipAnnotationWidget, primitive.top_shadow_color),
- XtRString, "black" },
-
- { XmNbottomShadowColor, XmCBottomShadowColor, XmRPixel,
- sizeof(Pixel),
- XtOffset(XipAnnotationWidget, primitive.bottom_shadow_color),
- XtRString, "black" },
-
- { XmNbackground, XmCBackground, XmRPixel,
- sizeof(Pixel),
- XtOffset(XipAnnotationWidget, core.background_pixel),
- XtRString, "Yellow" },
-
- { XmNtraversalOn, XmCTraversalOn, XmRBoolean,
- sizeof(Boolean),
- XtOffset (XipAnnotationWidget, primitive.traversal_on),
- XmRImmediate, (XtPointer)False },
-};
-
-static char defaultTranslations[] =
-" <Btn1Down>: activate()\n\
-";
-
-static XtActionsRec actions[] =
-{
- { "activate", (XtActionProc)activate },
-};
-
-XipAnnotationClassRec xipAnnotationClassRec =
-{
- { /* core_class fields */
- (WidgetClass)&xmPrimitiveClassRec, /* superclass */
- "XipAnnotation", /* class_name */
- sizeof(XipAnnotationRec), /* widget_size */
- NULL, /* class_initialize */
- NULL, /* class_part_initialize */
- False, /* class_inited */
- Initialize, /* initialize */
- NULL, /* initialize_hook */
- Realize, /* realize */
- /*XtInheritRealize, /* realize */
- actions, /* actions */
- XtNumber(actions), /* num_actions */
- resources, /* resources */
- XtNumber(resources), /* num_resources */
- NULLQUARK, /* xrm_class */
- True, /* compress_motion */
- False, /* compress_exposure */
- True, /* compress_enterleave */
- False, /* visible_interest */
- Destroy, /* destroy */
- Resize, /* resize */
- Redisplay, /* expose */
- SetValues, /* set_values */
- NULL, /* set_values_hook */
- XtInheritSetValuesAlmost, /* set_values_almost */
- NULL, /* get_values_hook */
- NULL, /* accept_focus */
- XtVersion, /* version */
- NULL, /* callback private */
- defaultTranslations, /* tm_table */
- QueryGeometry, /* query_geometry */
- XtInheritDisplayAccelerator, /* display_accelerator */
- NULL, /* extension */
- },
- { /* primitive_class fields */
- (XtWidgetProc)_XtInherit, /* border highlight */
- (XtWidgetProc)_XtInherit, /* border unhiglight */
- XtInheritTranslations, /* translations */
- NULL, /* arm_and_activate */
- NULL, /* syn resources */
- 0, /* num_sysresources */
- NULL, /* extensions */
- },
- { /* annotation_class fields */
- 0, /* extension */
- },
-};
-
-WidgetClass xipAnnotationWidgetClass = (WidgetClass) &xipAnnotationClassRec;
-
-
-static void Initialize( request, new, args, num_args )
- XipAnnotationWidget request, new;
- ArgList args;
- Cardinal *num_args;
-{
- /*printf( "init\n" );*/
-
- getDrawGC( new );
-
- new->annotation.cursor = XCreateFontCursor( XtDisplay(new),
- XC_hand1 );
-
- new->annotation.icon_text = 0;
-
- if( request->core.width == 0 )
- new->core.width = 25;
- if( request->core.height == 0 )
- new->core.height = 30;
-}
-
-static void getDrawGC( w )
- XipAnnotationWidget w;
-{
- XGCValues values;
- XtGCMask valueMask;
-
- values.foreground = w->primitive.foreground;
- values.background = w->core.background_pixel;
- valueMask = GCForeground | GCBackground;
-
- w->annotation.draw_GC = XtGetGC ( (Widget)w, valueMask, &values );
-}
-
-static void Realize( w, valueMask, attributes )
- XipAnnotationWidget w;
- Mask *valueMask;
- XSetWindowAttributes *attributes;
-{
- /*(*xipAnnotationClassRec.core_class.superclass->core_class.realize)
- (w, valueMask, attributes);*/
-
- XtCreateWindow( (Widget)w,
- InputOutput,
- CopyFromParent,
- *valueMask,
- attributes);
-
-#ifdef SHAPE
- {
- GC shape_gc;
- Pixmap shape_mask;
- XGCValues xgcv;
-
- shape_mask = XCreatePixmap( XtDisplay(w),
- XtWindow(w),
- w->core.width,
- w->core.height,
- 1 );
- shape_gc = XCreateGC( XtDisplay(w),
- shape_mask,
- 0,
- &xgcv);
-
- XSetForeground( XtDisplay(w),
- shape_gc,
- 0);
- XFillRectangle( XtDisplay(w),
- shape_mask,
- shape_gc,
- 0, 0,
- w->core.width, w->core.height );
- XSetForeground( XtDisplay(w),
- shape_gc,
- 1);
- XFillRectangle( XtDisplay(w),
- shape_mask,
- shape_gc,
- 1, 1,
- w->core.width-4, w->core.height-4 );
- XSetForeground( XtDisplay(w),
- shape_gc,
- 0);
- {
- int i;
-
- for( i = 0; i < w->core.width/6; i++ )
- XDrawLine( XtDisplay(w),
- shape_mask,
- shape_gc,
- w->core.width-4-i, w->core.height-4,
- w->core.width-4, w->core.height-4-i );
-
- XDrawLine( XtDisplay(w),
- shape_mask,
- shape_gc,
- w->core.width-4-i, w->core.height-4-i,
- w->core.width-4-i, w->core.height-4 );
- XDrawLine( XtDisplay(w),
- shape_mask,
- shape_gc,
- w->core.width-4-i, w->core.height-4-i,
- w->core.width-4, w->core.height-4-i );
- }
- XShapeCombineMask( XtDisplay(w),
- XtWindow(w),
- ShapeClip,
- 0, 0,
- shape_mask,
- ShapeSet);
-
- XSetForeground( XtDisplay(w),
- shape_gc,
- 0);
- XFillRectangle( XtDisplay(w),
- shape_mask,
- shape_gc,
- 0, 0,
- w->core.width, w->core.height );
- XSetForeground( XtDisplay(w),
- shape_gc,
- 1);
- XFillRectangle( XtDisplay(w),
- shape_mask,
- shape_gc,
- 0, 0,
- w->core.width-2, w->core.height-2 );
- XFillRectangle( XtDisplay(w),
- shape_mask,
- shape_gc,
- 2, 2,
- w->core.width-2, w->core.height-2 );
- XSetForeground( XtDisplay(w),
- shape_gc,
- 0);
- {
- int i;
-
- for( i = 0; i < w->core.width/6; i++ )
- XDrawLine( XtDisplay(w),
- shape_mask,
- shape_gc,
- w->core.width-1-i, w->core.height-1,
- w->core.width-1, w->core.height-1-i );
- }
- XShapeCombineMask( XtDisplay(w),
- XtWindow(w),
- ShapeBounding,
- 0, 0,
- shape_mask,
- ShapeSet);
-
- XFreePixmap( XtDisplay(w),
- shape_mask );
- }
-#endif
-
- XDefineCursor( XtDisplay(w),
- XtWindow(w),
- w->annotation.cursor );
-}
-
-static XtGeometryResult QueryGeometry( w, proposed, answer )
- XipAnnotationWidget w;
- XtWidgetGeometry *proposed;
- XtWidgetGeometry *answer;
-{
-
- answer->width = (Dimension)256;
- answer->height = (Dimension)120;
- answer->request_mode = CWWidth || CWHeight;
-
- return( XtGeometryAlmost );
-}
-
-static void Destroy( w )
- XipAnnotationWidget w;
-{
- XtReleaseGC( (Widget)w, w->annotation.draw_GC );
-
- XtRemoveAllCallbacks ( (Widget)w, XipNactivateCallback );
-}
-
-static void Resize( w )
- XipAnnotationWidget w;
-{
- /*if( w->core.width > w->annotation.image->width
- || w->core.height > w->annotation.image->height )
- XtWarning( "XipAnnotationWidget resized" );*/
-
-}
-
-
-static void Redisplay( w, event, region)
- XipAnnotationWidget w;
- XExposeEvent *event;
- Region region;
-{
- if( w->core.visible )
- {
- if( w->annotation.icon_text == 0 )
- w->annotation.icon_text = XCreateBitmapFromData( XtDisplay(w),
- XtWindow(w),
- icon_text_bits,
- icon_text_width,
- icon_text_height );
-
- XCopyPlane( XtDisplay(w),
- w->annotation.icon_text,
- XtWindow(w),
- w->annotation.draw_GC,
- 0, 0,
- icon_text_width, icon_text_height,
- 0, 0,
- 1 );
- /*XDrawLine( XtDisplay(w),
- XtWindow(w),
- w->annotation.draw_GC,
- 0, 0,
- 200, 200 );*/
- }
-}
-
-static Boolean SetValues( current, request, new, args, num_args )
- XipAnnotationWidget current, request, new;
- ArgList args;
- Cardinal *num_args;
-{
- Cardinal i;
-
- Boolean redraw = False;
-
- /*printf( "setv\n" );*/
-
- return( redraw );
-}
-
-static void activate( w, event )
- XipAnnotationWidget w;
- XEvent *event;
-{
- if( event->xbutton.x < w->core.width
- && event->xbutton.y < w->core.height )
- XtCallCallbacks( (Widget)w,
- XipNactivateCallback,
- (XtPointer) event );
-}
diff --git a/Utilities/IpPic/annotation/Annotation.h b/Utilities/IpPic/annotation/Annotation.h
deleted file mode 100755
index 4c3bdc8b49..0000000000
--- a/Utilities/IpPic/annotation/Annotation.h
+++ /dev/null
@@ -1,79 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
- * Annotation.h
- *---------------------------------------------------------------
- * DESCRIPTION
- * public header for the annotation widget
- *
- * Author
- * a.schroeter
- *
- *---------------------------------------------------------------
- *
- */
-
-#ifndef _XipAnnotationWidget_h
-#define _XipAnnotationWidget_h
-
-extern WidgetClass xipAnnotationWidgetClass;
-
-typedef struct _XipAnnotationClassRec *XipAnnotationWidgetClass;
-typedef struct _XipAnnotationRec *XipAnnotationWidget;
-
-#ifndef XipIsAnnotation
-#define XipIsAnnotation(w) XtIsSubclass(w, xipAnnotationWidgetClass)
-#endif
-
-/*
-** resource strings
-*/
-#define XipNactivateCallback XmNactivateCallback
-
-#define XipCActivateCallback XmCActivateCallback
-
-/*
-** new data types
-*/
-
-
-#endif /* _XipAnnotationWidget_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
diff --git a/Utilities/IpPic/annotation/AnnotationP.h b/Utilities/IpPic/annotation/AnnotationP.h
deleted file mode 100755
index f155393245..0000000000
--- a/Utilities/IpPic/annotation/AnnotationP.h
+++ /dev/null
@@ -1,119 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
- * AnnotationP.h
- *---------------------------------------------------------------
- * DESCRIPTION
- * private header file for the annotation widget
- *
- * Author
- * a.schroeter
- *
- *---------------------------------------------------------------
- *
- */
-
-#ifndef _XipAnnotationP_h
-#define _XipAnnotationP_h
-
-/* superclass */
-#include <Xm/XmP.h>
-
-#if( XmVersion >= 1002 )
-#include <Xm/PrimitiveP.h>
-#endif
-
-
-/* public header for this widget */
-#include "Annotation.h"
-
-/* other headers */
-
-
-#ifndef XlibSpecificationRelease
-#define XrmPermStringToQuark XrmStringToQuark
-#endif
-
-/*private macros */
-#ifndef Min
-#define Min(x, y) (((x) < (y)) ? (x) : (y))
-#endif
-#ifndef Max
-#define Max(x, y) (((x) > (y)) ? (x) : (y))
-#endif
-
-/* new fields for this widget's class record */
-typedef struct _XipAnnotationClassPart
- {
- XtPointer extension;
- } XipAnnotationClassPart;
-
-/* full class record declaration */
-typedef struct _XipAnnotationClassRec
- {
- CoreClassPart core_class;
- XmPrimitiveClassPart primitive_class;
- XipAnnotationClassPart annotation_class;
- } XipAnnotationClassRec;
-
-extern XipAnnotationClassRec xipAnnotationClassRec;
-
-/* new fields for this widget's instance record */
-typedef struct _XipAnnotationPart
- { /* resources */
-
- Cursor cursor;
- XtCallbackList activate_CB;
- Pixmap icon_text;
-
- /* private variables */
- GC draw_GC;
- } XipAnnotationPart;
-
-/* full instance record declaration */
-typedef struct _XipAnnotationRec
- { CorePart core;
- XmPrimitivePart primitive;
- XipAnnotationPart annotation;
- } XipAnnotationRec;
-
-#endif /* _XipAnnotationP_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
diff --git a/Utilities/IpPic/annotation/ad.h b/Utilities/IpPic/annotation/ad.h
deleted file mode 100755
index 4db90a1a50..0000000000
--- a/Utilities/IpPic/annotation/ad.h
+++ /dev/null
@@ -1,2 +0,0 @@
-"*background: gray75",
-"*annotation.background: yellow",
diff --git a/Utilities/IpPic/annotation/icon_text.xbm b/Utilities/IpPic/annotation/icon_text.xbm
deleted file mode 100755
index d38f1e15a5..0000000000
--- a/Utilities/IpPic/annotation/icon_text.xbm
+++ /dev/null
@@ -1,13 +0,0 @@
-#define icon_text_width 25
-#define icon_text_height 30
-static char icon_text_bits[] = {
- 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x80, 0xff, 0x01, 0x00,
- 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0xfc, 0xff, 0x00, 0x00,
- 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0xfc, 0xff, 0x03, 0x00,
- 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0xfc, 0xff, 0x00, 0x00,
- 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0xfc, 0xff, 0x07, 0x00,
- 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00,
- 0xfc, 0xff, 0x0f, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00,
- 0xfc, 0xff, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00,
- 0xfc, 0x3f, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00,
- 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00, 0x00};
diff --git a/Utilities/IpPic/annotation/main.ad b/Utilities/IpPic/annotation/main.ad
deleted file mode 100755
index 25cb50de92..0000000000
--- a/Utilities/IpPic/annotation/main.ad
+++ /dev/null
@@ -1,3 +0,0 @@
-
-*background: gray75
-*annotation.background: yellow
diff --git a/Utilities/IpPic/annotation/main.c b/Utilities/IpPic/annotation/main.c
deleted file mode 100755
index ad280d5dda..0000000000
--- a/Utilities/IpPic/annotation/main.c
+++ /dev/null
@@ -1,181 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-#include <Xm/Xm.h>
-#include <Xm/BulletinB.h>
-#include <Xm/DrawingA.h>
-#include <Xm/PushB.h>
-#include <Xm/Frame.h>
-
-#include <mitkIpPic.h>
-
-#include <pic/Pic.h>
-
-#include "Annotation.h"
-
-/*#include <X11/Editres.h>*/
-
-static String fallback_resources[] = {
-#include "ad.h"
-NULL
-};
-
-
-static int n;
-static Arg args[20];
-
-void activate( Widget w, XtPointer data, XtPointer call_data );
-
-extern void _XEditResCheckMessages();
-
-Widget button1;
-Widget button2;
-
-Position x, y;
-char* text;
-
-main( int argc, char *argv[] )
-{
- XtAppContext app_context;
- Widget toplevel, bb, pic, annotation;
- /*Widget button;*/
-
-
- toplevel = XtVaAppInitialize( &app_context,
- "Test",
- NULL, 0,
- &argc, argv,
- fallback_resources,
- NULL );
-
- XtAddEventHandler( toplevel,
- (EventMask)0,
- True,_XEditResCheckMessages,
- NULL );
-
- n = 0;
- XtSetArg( args[n], XmNheight, 400 ); n++;
- XtSetArg( args[n], XmNwidth, 400 ); n++;
-
- XtSetValues( toplevel, args, n );
-
- bb = XmCreateDrawingArea( toplevel, "bb", args, n );
- XtManageChild( bb );
-
-
- n = 0;
- XtSetArg( args[n], XmNx, 200 ); n++;
- XtSetArg( args[n], XmNy, 100 ); n++;
- annotation = XtCreateManagedWidget( "annotation",
- xipAnnotationWidgetClass,
- bb,
- args, n );
- XtAddCallback( annotation, XipNactivateCallback, activate, NULL );
-
- n = 0;
- XtSetArg( args[n], XmNx, 0 ); n++;
- XtSetArg( args[n], XmNy, 0 ); n++;
- XtSetArg( args[n], XipNquantisation, True ); n++;
- XtSetArg( args[n], XipNpic, mitkIpPicGet( "../b.pic", NULL ) ); n++;
- pic = XtCreateManagedWidget( "pic",
- xipPicWidgetClass,
- bb,
- args, n );
-/**************/
- XtRealizeWidget( toplevel );
-/**************/
- {
- mitkIpPicDescriptor *pic;
- _mitkIpPicTagsElement_t *head;
- mitkIpPicTSV_t *tsv;
-
- pic = mitkIpPicGetTags( "../b.pic",
- NULL );
- tsv = mitkIpPicQueryTag( pic, "ANNOTATION" );
- if( tsv != NULL )
- {
- head = tsv->value;
-
- tsv = _mitkIpPicFindTag( head, "TEXT" )->tsv;
- text = malloc( strlen(tsv->value) );
- strcpy( text, tsv->value );
- printf( "%s\n", text );
-
- tsv = _mitkIpPicFindTag( head, "POSITION" )->tsv;
- x = ((mitkIpUInt4_t *)(tsv->value))[0];
- y = ((mitkIpUInt4_t *)(tsv->value))[1];
- printf( "%i %i\n", x, y );
- }
-
- mitkIpPicFree( pic );
- }
-/**************/
- XtVaSetValues( annotation,
- XmNx, x,
- XmNy, y,
- NULL );
-/**************/
- XtAppMainLoop(app_context);
-}
-
-void activate( Widget w, XtPointer data, XtPointer call_data )
-{
- static Widget box = 0;
-
- /*printf( "activated\n" );*/
-
- if( box == 0 )
- box = XmCreateInformationDialog( w, "info", NULL, 0 );
-
- XtVaSetValues( box,
- XmNnoResize, True,
- XtVaTypedArg,
- XmNdialogTitle, XmRString, "HELP", sizeof( char *),
- XtVaTypedArg,
- XmNmessageString, XmRString, text, sizeof( char *),
- XtVaTypedArg,
- XmNokLabelString, XmRString, " Close ", sizeof( char *),
- NULL );
-
- XtUnmanageChild( XmMessageBoxGetChild( box, XmDIALOG_CANCEL_BUTTON ) );
- XtUnmanageChild( XmMessageBoxGetChild( box, XmDIALOG_HELP_BUTTON ) );
-
- XtManageChild( box );
-}
diff --git a/Utilities/IpPic/doc/ipPic.pdf b/Utilities/IpPic/doc/ipPic.pdf
deleted file mode 100644
index c43cce9032..0000000000
--- a/Utilities/IpPic/doc/ipPic.pdf
+++ /dev/null
@@ -1,2879 +0,0 @@
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-trailer
-<<
-/Size 183
-/Root 3 0 R
-/Info 1 0 R
->>
-startxref
-119541
-%%EOF
diff --git a/Utilities/IpPic/endian.c b/Utilities/IpPic/endian.c
deleted file mode 100755
index 31ddd1f570..0000000000
--- a/Utilities/IpPic/endian.c
+++ /dev/null
@@ -1,57 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-union {
- unsigned short s;
- unsigned char b;
-} t = { 0x1234 };
-
-void main( void )
-{
-
- /*t.s = 0x1234;*/
-
- if( t.b == 0x12 )
- printf( "big\n" );
- else
- printf( "little\n" );
-
-}
diff --git a/Utilities/IpPic/files.cmake b/Utilities/IpPic/files.cmake
deleted file mode 100644
index ef022fffa9..0000000000
--- a/Utilities/IpPic/files.cmake
+++ /dev/null
@@ -1,15 +0,0 @@
-set(CPP_FILES
- ipPicInfo.c ipPicType.c
- ipPicAddT.c ipPicQueryT.c ipPicDelT.c ipPicGetT.c
- ipPicOldGet.c ipPicOldGetH.c ipPicOldGetS.c
- ipPicGet.c ipPicGetH.c ipPicGetS.c
- ipPicPut.c ipPicPutS.c
- ipPicGetMem.c ipPicPutMem.c
- ipPicCopyS.c ipPicCopyH.c
- ipPicNew.c ipPicClear.c ipPicFree.c ipPicClone.c
- ipEndian.c ipFRead.c ipFWrite.c
- ipError.c
- ipPicSize.c ipPicElements.c
- ipPicTSVSize.c ipPicTSVElements.c
- )
-
diff --git a/Utilities/IpPic/ipEndian.c b/Utilities/IpPic/ipEndian.c
deleted file mode 100755
index c1c2ed6193..0000000000
--- a/Utilities/IpPic/ipEndian.c
+++ /dev/null
@@ -1,149 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
- * $RCSfile$
- *---------------------------------------------------------------
- * DESCRIPTION
- * Routines for the conversion of Data
- * between different machine representations
- *
- * $Log$
- * Revision 1.10 2004/01/17 22:58:18 andre
- * big endian fixes
- *
- * Revision 1.6 2004/01/17 22:56:18 uid9277
- * big endian fixes
- *
- * Revision 1.5 1999/11/27 23:59:45 andre
- * *** empty log message ***
- *
- * Revision 1.4 1999/11/27 19:15:08 andre
- * *** empty log message ***
- *
- * Revision 1.3 1998/11/11 11:11:26 andre
- * *** empty log message ***
- *
- * Revision 1.2 1997/09/15 13:21:07 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:58 andre
- * initial import
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision, NO error checking
- *
- *
- *---------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)ipEndian\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include <stdio.h>
-
-#include "mitkIpPic.h"
-
-_mitkIpEndian_t _mitkIpEndian( void )
-{
- static union
- { mitkIpUInt2_t s;
- mitkIpUInt1_t b;
- } t = { 0x1234 };
-
- if( t.b == 0x12 )
- return( _mitkIpEndianBig );
- if( t.b == 0x34 )
- return( _mitkIpEndianLittle );
- else
- {
- fprintf( stderr, "%s:_mitkIpEndian: WARNING: unknown endian !!!\n", __FILE__ );
- return( _mitkIpEndianUnknown );
- }
-}
-
-void _mitkIpCp( void *source, void *destination, unsigned long int len )
-{
- if( !source )
- return;
- if( !destination )
- return;
-
- memmove( destination, source, len );
-}
-
-void _mitkIpCvtEndian( void *data, unsigned long int len, unsigned char bytes )
-{
- unsigned long int i;
- unsigned char i2;
- char buff;
-
- if( !data )
- return;
-
- for( i=0; i<len; i+=bytes )
- for( i2=0; i2<bytes/2; i2++ )
- {
- buff = ((char *)data)[i+i2];
- ((char *)data)[i+i2] = ((char *)data)[i+bytes-i2-1];
- ((char *)data)[i+bytes-i2-1] = buff;
- }
-}
-
-void _mitkIpCpCvtEndian( void *source, void *destination, unsigned long int len, unsigned char bytes )
-{
- unsigned long int i;
- unsigned char i2;
-
- if( !source )
- return;
- if( !destination )
- return;
-
- if( bytes == 1 )
- memmove( destination, source, len );
- else
- for( i=0; i<len; i+=bytes )
- for( i2=0; i2<bytes; i2++ )
- {
- ((char *)destination)[i+i2] = ((char *)source)[i+bytes-i2-1];
- }
-}
diff --git a/Utilities/IpPic/ipError.c b/Utilities/IpPic/ipError.c
deleted file mode 100755
index 815215a529..0000000000
--- a/Utilities/IpPic/ipError.c
+++ /dev/null
@@ -1,79 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * maps @c mitkIpError_t type values to printable strings
-*/
-
-#ifndef lint
- static char *what = { "@(#)mitkIpError\t\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include <stdio.h>
-
-#include "mitkIpTypes.h"
-
-/** maps mitkIpError_t type values to printable strings
- * @param error the error number
- * @return the printable string
- *
- * AUTHOR & DATE
- */
-
-char *mitkIpErrorStr( mitkIpError_t error )
-{
- char *str;
-
- switch( error )
- {
- case mitkIpError :
- str = "generic error";
- break;
- case mitkIpOK :
- str = "No Error";
- break;
- default:
- str = "mitkIpError: Unknown Error";
- fprintf( stderr, "mitkIpErrorStr: sorry, unknown error (#%i)\n", error );
- break;
- }
-
- return( str );
-}
diff --git a/Utilities/IpPic/ipFRead.c b/Utilities/IpPic/ipFRead.c
deleted file mode 100755
index 19a42042c0..0000000000
--- a/Utilities/IpPic/ipFRead.c
+++ /dev/null
@@ -1,174 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * reads big- and litle- endian from disk
- * and swaps to the other endianess
- *
- * $Log$
- * Revision 1.14 2005/09/09 09:14:45 ivo
- * FIX: warnings on windows
- *
- * Revision 1.13 2003/03/06 10:53:08 andre
- * *** empty log message ***
- *
- * Revision 1.12 2002/11/13 17:52:59 ivo
- * new ipPic added.
- *
- * Revision 1.10 2002/02/27 08:54:43 andre
- * zlib changes
- *
- * Revision 1.9 2000/05/04 12:52:35 ivo
- * inserted BSD style license
- *
- * Revision 1.8 2000/01/17 18:31:59 andre
- * *** empty log message ***
- *
- * Revision 1.7 1999/12/09 19:12:09 andre
- * *** empty log message ***
- *
- * Revision 1.5 1999/11/29 09:34:34 andre
- * *** empty log message ***
- *
- * Revision 1.4 1999/11/28 16:27:20 andre
- * *** empty log message ***
- *
- * Revision 1.3 1999/11/27 19:15:08 andre
- * *** empty log message ***
- *
- * Revision 1.2 1997/09/15 13:21:08 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:58 andre
- * initial import
- *
- * Revision 0.1 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)_ipFRead\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include <stdio.h>
-#include <stdlib.h>
-#ifdef WIN32
-#include <io.h>
-#else
-#include <unistd.h>
-#endif
-
-#include "mitkIpPic.h"
-
-size_t
-mitkIpFReadCvt( void *ptr, size_t size, size_t nitems, FILE *stream )
-{
- size_t bytes_return;
-
- bytes_return = fread( ptr, size, nitems, stream );
- _mitkIpCvtEndian( ptr, size*nitems, size );
-
- return( bytes_return );
-}
-
-#ifdef USE_ZLIB
-mitkIpBool_t _mitkIpPicCanReadCompressed = mitkIpTrue;
-#else
-mitkIpBool_t _mitkIpPicCanReadCompressed = mitkIpFalse;
-#endif
-
-size_t
-mitkIpPicFReadCvt( void *ptr, size_t size, size_t nitems, mitkIpPicFile_t stream )
-{
- size_t bytes_return;
-
- bytes_return = mitkIpPicFRead( ptr, size, nitems, stream );
-
- _mitkIpCvtEndian( ptr, size*nitems, size );
-
- return( bytes_return );
-}
-
-int
-mitkIpPicAccess( const char *path, int mode )
-{
- int status;
-
- status = access( path, mode );
-
- if( status == -1 )
- {
- char buff[1024];
-
- sprintf( buff, "%s.gz", path );
-
- status = access( buff, mode );
- }
-
- return( status );
-}
-int
-mitkIpPicRemoveFile( const char *path )
-{
- int status;
-
- status = remove( path );
-
- if( status != 0 )
- {
- char buff[1024];
-
- sprintf( buff, "%s.gz", path );
-
- status = remove( buff );
- }
-
- return( status );
-}
diff --git a/Utilities/IpPic/ipFWrite.c b/Utilities/IpPic/ipFWrite.c
deleted file mode 100755
index cc17208106..0000000000
--- a/Utilities/IpPic/ipFWrite.c
+++ /dev/null
@@ -1,156 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * writes big- and litle- endian to disk
- * and swaps to the other endianess
- *
- * $Log$
- * Revision 1.8 2003/02/18 12:28:23 andre
- * write compressed pic files
- *
- * Revision 1.7 2002/11/13 17:52:59 ivo
- * new ipPic added.
- *
- * Revision 1.5 2000/05/04 12:52:35 ivo
- * inserted BSD style license
- *
- * Revision 1.4 2000/05/04 12:35:57 ivo
- * some doxygen comments.
- *
- * Revision 1.3 1997/09/15 13:22:32 andre
- * *** empty log message ***
- *
- * Revision 1.2 1997/09/15 13:21:09 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:58 andre
- * initial import
- *
- * Revision 0.1 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)_mitkIpFWrite\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include <stdio.h>
-#include <stdlib.h>
-
-#include "mitkIpPic.h"
-
-#ifdef USE_ZLIB
-mitkIpBool_t _mitkIpPicCanWriteCompressed = mitkIpTrue;
-#else
-mitkIpBool_t _mitkIpPicCanWriteCompressed = mitkIpFalse;
-#endif
-
-
-static mitkIpBool_t mitk_write_compressed = mitkIpFalse;
-
-mitkIpBool_t
-mitkIpPicGetWriteCompression( void )
-{
- return( mitk_write_compressed );
-}
-
-mitkIpBool_t
-mitkIpPicSetWriteCompression( mitkIpBool_t compression )
-{
- mitkIpBool_t compression_old = mitk_write_compressed;
-
- mitk_write_compressed = compression;
-
- return( compression_old );
-}
-
-size_t
-mitkIpFWriteCvt( void *ptr, size_t size, size_t nitems, FILE *stream )
-{
- size_t bytes_return;
-
- void *buff;
- buff = malloc( size * nitems );
- _mitkIpCpCvtEndian( ptr, buff, size*nitems, size );
- bytes_return = fwrite( buff, size, nitems, stream);
- free( buff );
-
- return( bytes_return );
-}
-
-size_t
-_mitkIpPicFWrite( const void *ptr, size_t size, size_t nitems, mitkIpPicFile_t stream)
-{
- size_t bytes_return;
-
-#ifdef USE_ZLIB
- if( mitk_write_compressed )
- bytes_return = gzwrite( stream, (void *)ptr, size*nitems);
- else
-#endif
- bytes_return = fwrite( ptr, size, nitems, (FILE *)stream );
-
- return( bytes_return );
-}
-
-size_t
-mitkIpPicFWriteCvt( void *ptr, size_t size, size_t nitems, mitkIpPicFile_t stream )
-{
- size_t bytes_return;
-
- void *buff;
- buff = malloc( size * nitems );
- _mitkIpCpCvtEndian( ptr, buff, size*nitems, size );
- bytes_return = mitkIpPicFWrite( buff, size, nitems, stream);
- free( buff );
-
- return( bytes_return );
-}
diff --git a/Utilities/IpPic/ipPic.dox b/Utilities/IpPic/ipPic.dox
deleted file mode 100755
index 03d8f45c64..0000000000
--- a/Utilities/IpPic/ipPic.dox
+++ /dev/null
@@ -1,401 +0,0 @@
-# Doxyfile 0.49-990829
-
-# This file describes the settings to be used by doxygen for a project
-#
-# All text after a hash (#) is considered a comment and will be ignored
-# The format is:
-# TAG = value [value, ...]
-# Values that contain spaces should be placed between quotes (" ")
-
-#---------------------------------------------------------------------------
-# General configuration options
-#---------------------------------------------------------------------------
-
-# The PROJECT_NAME tag is a single word (or a sequence of word surrounded
-# by quotes) that should identify the project.
-
-PROJECT_NAME = ipPic
-
-# The PROJECT_NUMBER tag can be used to enter a project or revision number.
-# This could be handy for archiving the generated documentation or
-# if some version control system is used.
-
-PROJECT_NUMBER = 1
-
-# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute)
-# base path where the generated documentation will be put.
-# If a relative path is entered, it will be relative to the location
-# where doxygen was started. If left blank the current directory will be used.
-
-OUTPUT_DIRECTORY = doc
-
-# The OUTPUT_LANGUAGE tag is used to specify the language in which all
-# documentation generated by doxygen is written. Doxygen will use this
-# information to generate all constant output in the proper language.
-# The default language is English, other supported languages are:
-# Dutch, French, Italian, Czech, Swedish, German and Japanese
-
-OUTPUT_LANGUAGE = English
-
-# The QUIET tag can be used to turn on/off the messages that are generated
-# by doxygen. Possible values are YES and NO. If left blank NO is used.
-
-QUIET = NO
-
-# The WARNINGS tag can be used to turn on/off the warning messages that are
-# generated by doxygen. Possible values are YES and NO. If left blank
-# NO is used.
-
-WARNINGS = YES
-
-# The DISABLE_INDEX tag can be used to turn on/off the condensed index at
-# top of each HTML page. The value NO (the default) enables the index and
-# the value YES disables it.
-
-DISABLE_INDEX = NO
-
-# If the EXTRACT_ALL tag is set to YES all classes and functions will be
-# included in the documentation, even if no documentation was available.
-
-EXTRACT_ALL = YES
-
-# If the EXTRACT_PRIVATE tag is set to YES all private members of a class
-# will be included in the documentation.
-
-EXTRACT_PRIVATE = NO
-
-# If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all
-# undocumented members inside documented classes or files.
-
-HIDE_UNDOC_MEMBERS = YES
-
-# If the HIDE_UNDOC_CLASSESS tag is set to YES, Doxygen will hide all
-# undocumented classes.
-
-HIDE_UNDOC_CLASSES = YES
-
-# If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will
-# include brief member descriptions after the members that are listed in
-# the file and class documentation (similar to JavaDoc).
-# Set to NO to disable this.
-
-BRIEF_MEMBER_DESC = YES
-
-# The INTERNAL_DOCS tag determines if documentation
-# that is typed after a \internal command is included. If the tag is set
-# to NO (the default) then the documentation will be excluded.
-# Set it to YES to include the internal documentation.
-
-INTERNAL_DOCS = NO
-
-# If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend
-# the brief description of a member or function before the detailed description.
-# Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
-# brief descriptions will be completely suppressed.
-
-REPEAT_BRIEF = YES
-
-# If the FULL_PATH_NAMES tag is set to YES Doxygen will prepend the full
-# path before files name in the file list and in the header files. If set
-# to NO the shortest path that makes the file name unique will be used.
-
-FULL_PATH_NAMES = NO
-
-# If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag
-# can be used to strip a user defined part of the path. Stripping is
-# only done if one of the specified strings matches the left-hand part of
-# the path.
-
-STRIP_FROM_PATH =
-
-# If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will
-# generate a class diagram (in Html and LaTeX) for classes with base or
-# super classes. Setting the tag to NO turns the diagrams off.
-
-CLASS_DIAGRAMS = YES
-
-# If the SOURCE_BROWSER tag is set to YES than the body of a member or
-# function will be appended as a block of code to the documentation of.
-# that member or function.
-
-SOURCE_BROWSER = NO
-
-# If the CASE_SENSE_NAMES tag is set to NO (the default) then Doxygen
-# will only generate file names in lower case letters. If set to
-# YES upper case letters are also allowed. This is useful if you have
-# classes or files whose names only differ in case and if your file system
-# supports case sensitive file names.
-
-CASE_SENSE_NAMES = NO
-
-# If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen
-# will generate a verbatim copy of the header file for each class for
-# which an include is specified. Set to NO to disable this.
-
-VERBATIM_HEADERS = NO
-
-# If the JAVADOC_NO_AUTOBRIEF is set to YES (the default) then Doxygen
-# will interpret the first line (until the first dot) of a JavaDoc-style
-# comment as the brief description. If set to NO, the Javadoc-style will
-# behave just like the Qt-style comments.
-
-JAVADOC_AUTOBRIEF = YES
-
-#---------------------------------------------------------------------------
-# configuration options related to the input files
-#---------------------------------------------------------------------------
-
-# The INPUT tag can be used to specify the files and/or directories that contain
-# documented source files. You may enter file names like "myfile.cpp" or
-# directories like "/usr/src/myproject". Separate the files or directories
-# with spaces.
-
-INPUT = . mitkIpPic.h
-
-# If the value of the INPUT tag contains directories, you can use the
-# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
-# and *.h) to filter out the source-files in the directories. If left
-# blank all files are included.
-
-FILE_PATTERNS = *.c
-
-# The RECURSIVE tag can be used to turn specify whether or not subdirectories
-# should be searched for input files as well. Possible values are YES and NO.
-# If left blank NO is used.
-
-RECURSIVE = NO
-
-# The EXCLUDE tag can be used to specify files and/or directories that should
-# excluded from the INPUT source files. This way you can easily exclude a
-# subdirectory from a directory tree whose root is specified with the INPUT tag.
-
-EXCLUDE =
-
-# If the value of the INPUT tag contains directories, you can use the
-# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
-# certain files from those directories.
-
-EXCLUDE_PATTERNS =
-
-# The EXAMPLE_PATH tag can be used to specify one or more files or
-# directories that contain example code fragments that are included (see
-# the \include command).
-
-EXAMPLE_PATH =
-
-# The INPUT_FILTER tag can be used to specify a program that doxygen should
-# invoke to filter for each input file. Doxygen will invoke the filter program
-# by executing (via popen()) the command <filter> <input-file>, where <filter>
-# is the value of the INPUT_FILTER tag, and <input-file> is the name of an
-# input file. Doxygen will then use the output that the filter program writes
-# to standard output.
-
-INPUT_FILTER =
-
-#---------------------------------------------------------------------------
-# configuration options related to the HTML output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_HTML tag is set to YES (the default) Doxygen will
-# generate HTML output
-
-GENERATE_HTML = YES
-
-# The HTML_OUTPUT tag is used to specify where the HTML docs will be put.
-# If a relative path is entered the value of OUTPUT_DIRECTORY will be
-# put in front of it. If left blank `html' will be used as the default path.
-
-HTML_OUTPUT =
-
-# The HTML_HEADER tag can be used to specify a personal HTML header for
-# each generated HTML page. If it is left blank doxygen will generate a
-# standard header.
-
-HTML_HEADER =
-
-# The HTML_FOOTER tag can be used to specify a personal HTML footer for
-# each generated HTML page. If it is left blank doxygen will generate a
-# standard footer.
-
-HTML_FOOTER =
-
-# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes,
-# files or namespaces will be aligned in HTML using tables. If set to
-# NO a bullet list will be used.
-
-HTML_ALIGN_MEMBERS = YES
-
-# If the GENERATE_HTMLHELP tag is set to YES, additional index files
-# will be generated that can be used as input for tools like the
-# Microsoft HTML help workshop to generate a compressed HTML help file (.chm)
-# of the generated HTML documentation.
-
-GENERATE_HTMLHELP = NO
-
-# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index
-# of all compounds will be generated. Enable this if the project
-# contains a lot of classes, structs, unions or interfaces.
-
-ALPHABETICAL_INDEX = NO
-
-#---------------------------------------------------------------------------
-# configuration options related to the LaTeX output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will
-# generate Latex output.
-
-GENERATE_LATEX = NO
-
-# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put.
-# If a relative path is entered the value of OUTPUT_DIRECTORY will be
-# put in front of it. If left blank `latex' will be used as the default path.
-
-LATEX_OUTPUT =
-
-# If the COMPACT_LATEX tag is set to YES Doxygen generates more compact
-# LaTeX documents. This may be useful for small projects and may help to
-# save some trees in general.
-
-COMPACT_LATEX = NO
-
-# The PAPER_TYPE tag can be used to set the paper type that is used
-# by the printer. Possible values are: a4, a4wide, letter, legal and
-# executive. If left blank a4wide will be used.
-
-PAPER_TYPE = a4wide
-
-# The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX
-# packages that should be included in the LaTeX output.
-
-EXTRA_PACKAGES =
-
-#---------------------------------------------------------------------------
-# configuration options related to the man page output
-#---------------------------------------------------------------------------
-
-# If the GENERATE_MAN tag is set to YES (the default) Doxygen will
-# generate man pages
-
-GENERATE_MAN = NO
-
-# The MAN_OUTPUT tag is used to specify where the man pages will be put.
-# If a relative path is entered the value of OUTPUT_DIRECTORY will be
-# put in front of it. If left blank `man' will be used as the default path.
-
-MAN_OUTPUT =
-
-# The MAN_EXTENSION tag determines the extension that is added to
-# the generated man pages (default is the subroutine's section .3)
-
-MAN_EXTENSION = .3
-
-#---------------------------------------------------------------------------
-# Configuration options related to the preprocessor
-#---------------------------------------------------------------------------
-
-# If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will
-# evaluate all C-preprocessor directives found in the sources and include
-# files.
-
-ENABLE_PREPROCESSING = YES
-
-# If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro
-# names in the source code. If set to NO (the default) only conditional
-# compilation will be performed.
-
-MACRO_EXPANSION = NO
-
-# If the SEARCH_INCLUDES tag is set to YES (the default) the includes files
-# in the INCLUDE_PATH (see below) will be search if a #include is found.
-
-SEARCH_INCLUDES = YES
-
-# The INCLUDE_PATH tag can be used to specify one or more directories that
-# contain include files that are not input files but should be processed by
-# the preprocessor.
-
-INCLUDE_PATH =
-
-# The PREDEFINED tag can be used to specify one or more macro names that
-# are defined before the preprocessor is started (similar to the -D option of
-# gcc). The argument of the tag is a list of macros of the form: name
-# or name=definition (no spaces). If the definition and the = are
-# omitted =1 is assumed.
-
-PREDEFINED = DOXYGEN_IGNORE
-
-# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES
-# then the macro expansion is limited to the macros specified with the
-# PREDEFINED tag.
-
-EXPAND_ONLY_PREDEF = NO
-
-#---------------------------------------------------------------------------
-# Configuration options related to external references
-#---------------------------------------------------------------------------
-
-# The TAGFILES tag can be used to specify one or more tagfiles.
-
-TAGFILES =
-
-# When a file name is specified after GENERATE_TAGFILE, doxygen will create
-# a tag file that is based on the input files it reads.
-
-GENERATE_TAGFILE =
-
-# If the ALLEXTERNALS tag is set to YES all external classes will be listed
-# in the class index. If set to NO only the inherited external classes
-# will be listed.
-
-ALLEXTERNALS = NO
-
-# The PERL_PATH should be the absolute path and name of the perl script
-# interpreter (i.e. the result of `which perl').
-
-PERL_PATH = /usr/bin/perl
-
-#---------------------------------------------------------------------------
-# Configuration options related to the search engine
-#---------------------------------------------------------------------------
-
-# The SEARCHENGINE tag specifies whether or not a search engine should be
-# used. If set to NO the values of all tags below this one will be ignored.
-
-SEARCHENGINE = NO
-
-# The CGI_NAME tag should be the name of the CGI script that
-# starts the search engine (doxysearch) with the correct parameters.
-# A script with this name will be generated by doxygen.
-
-CGI_NAME = search.cgi
-
-# The CGI_URL tag should be the absolute URL to the directory where the
-# cgi binaries are located. See the documentation of your http daemon for
-# details.
-
-CGI_URL =
-
-# The DOC_URL tag should be the absolute URL to the directory where the
-# documentation is located. If left blank the absolute path to the
-# documentation, with file:// prepended to it, will be used.
-
-DOC_URL =
-
-# The DOC_ABSPATH tag should be the absolute path to the directory where the
-# documentation is located. If left blank the directory on the local machine
-# will be used.
-
-DOC_ABSPATH =
-
-# The BIN_ABSPATH tag must point to the directory where the doxysearch binary
-# is installed.
-
-BIN_ABSPATH = /usr/local/bin/
-
-# The EXT_DOC_PATHS tag can be used to specify one or more paths to
-# documentation generated for other projects. This allows doxysearch to search
-# the documentation for these projects as well.
-
-EXT_DOC_PATHS =
-
diff --git a/Utilities/IpPic/ipPicAddT.c b/Utilities/IpPic/ipPicAddT.c
deleted file mode 100755
index 35bec09865..0000000000
--- a/Utilities/IpPic/ipPicAddT.c
+++ /dev/null
@@ -1,103 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/** @file
- * inserts a tsv into the pic
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicAddTag\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-
-void
-mitkIpPicAddTag( mitkIpPicDescriptor *pic, mitkIpPicTSV_t *tsv )
-{
- pic->info->tags_head = _mitkIpPicInsertTag( pic->info->tags_head, tsv );
-}
-
-void
-mitkIpPicAddSubTag( mitkIpPicTSV_t *parent, mitkIpPicTSV_t *tsv )
-{
- if( parent->type != mitkIpPicTSV )
- return;
-
- parent->n[0]++;
- parent->value = _mitkIpPicInsertTag( parent->value, tsv );
-}
-
-_mitkIpPicTagsElement_t *
-_mitkIpPicInsertTag( _mitkIpPicTagsElement_t *head, mitkIpPicTSV_t *tsv )
-{
- int i;
- _mitkIpPicTagsElement_t *new;
- _mitkIpPicTagsElement_t *current;
-
- tsv->tag[_mitkIpPicTAGLEN] = '\0';
- for( i=strlen(tsv->tag); i<_mitkIpPicTAGLEN; i++ )
- tsv->tag[i] = ' ';
-
- new = malloc( sizeof(_mitkIpPicTagsElement_t) );
-
- new->tsv = tsv;
- new->prev = NULL;
- new->next = NULL;
-
- if( head == NULL )
- {
- head = new;
- }
- else
- {
- current = head;
-
- while( current->next != NULL )
- {
- current = current->next;
- }
-
- new->prev = current;
- current->next = new;
- }
-
- return( head );
-}
diff --git a/Utilities/IpPic/ipPicAnnotation.h b/Utilities/IpPic/ipPicAnnotation.h
deleted file mode 100755
index 64aa9d944d..0000000000
--- a/Utilities/IpPic/ipPicAnnotation.h
+++ /dev/null
@@ -1,81 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
- * mitkIpPicAnnotation.h
- *---------------------------------------------------------------------
- * DESCRIPTION
- * declarations for the annotations in the pic format
- *
- * AUTHOR & DATE
- * Andre Schroeter 09.01.95
- *
- * UPDATES
- * a short history of the file
- *
- *---------------------------------------------------------------------
- */
-
-#ifndef _mitkIpPicAnnotation_h
-#define _mitkIpPicAnnotation_h
-
-typedef enum
- {
- mitkIpPicAUnknown = 0,
- mitkIpPicAText = 1
- } mitkIpPicAnnotationType_t;
-
-typedef struct
- {
- mitkIpUInt4_t _magic;
-
- mitkIpPicAnnotationType_t type;
-
- mitkIpUInt4_t location_x;
- mitkIpUInt4_t location_y;
-
- mitkIpUInt4_t position_x;
- mitkIpUInt4_t position_y;
- char *text;
- } mitkIpPicAnnotation_t;
-
-#endif /* _mitkIpPicAnnotation_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
-
diff --git a/Utilities/IpPic/ipPicAnnotations.h b/Utilities/IpPic/ipPicAnnotations.h
deleted file mode 100755
index edcd5b2795..0000000000
--- a/Utilities/IpPic/ipPicAnnotations.h
+++ /dev/null
@@ -1,73 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
- * mitkIpPicAnnotations.h
- *---------------------------------------------------------------------
- * DESCRIPTION
- * declarations for the annotations in the pic format
- *
- * AUTHOR & DATE
- * Andre Schroeter 09.01.95
- *
- * UPDATES
- * a short history of the file
- *
- *---------------------------------------------------------------------
- */
-
-#ifndef _mitkIpPicAnnotations_h
-#define _mitkIpPicAnnotations_h
-
-typedef enum
- {
- mitkIpPicAUnknown = 0,
- mitkIpPicAText = 1
- } mitkIpPicAnnotations_t;
-
-typedef struct
- {
- mitkIpUInt4_t xpos;
- mitkIpUInt4_t ypos;
- char *text;
- } mitkIpPicAnnotation;
-
-#endif /* _mitkIpPicAnnotations_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
diff --git a/Utilities/IpPic/ipPicClear.c b/Utilities/IpPic/ipPicClear.c
deleted file mode 100755
index 6825cb047f..0000000000
--- a/Utilities/IpPic/ipPicClear.c
+++ /dev/null
@@ -1,127 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * Clears the entries in a picDescriptor
- * and frees the data and info
- *
- * $Log$
- * Revision 1.6 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.4 2000/05/04 12:52:36 ivo
- * inserted BSD style license
- *
- * Revision 1.3 2000/05/04 12:35:58 ivo
- * some doxygen comments.
- *
- * Revision 1.2 1997/09/15 13:21:10 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:58 andre
- * initial import
- *
- * Revision 0.1 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicClear\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-void mitkIpPicClear( mitkIpPicDescriptor *pic )
-{
- if( pic != NULL )
- {
- if( pic->data != NULL )
- {
- free( pic->data );
- pic->data = NULL;
- }
-
- if( pic->info != NULL )
- {
- _mitkIpPicFreeTags( pic->info->tags_head );
- pic->info->tags_head = NULL;
-
- /*free( pic->info );
- pic->info = NULL;*/
- }
- pic->type = mitkIpPicUnknown;
- }
-}
-
-void _mitkIpPicFreeTags( _mitkIpPicTagsElement_t *head )
-{
- _mitkIpPicTagsElement_t *current;
-
- current = head;
- while( current != NULL )
- {
- _mitkIpPicTagsElement_t *this = current;
- current = current->next;
-
- if( this->tsv != NULL )
- {
- if( this->tsv->value != NULL )
- {
- if( this->tsv->type == mitkIpPicTSV )
- _mitkIpPicFreeTags( this->tsv->value );
- else
- free( this->tsv->value );
- }
- free( this->tsv );
- }
-
- free( this );
- }
-}
diff --git a/Utilities/IpPic/ipPicClone.c b/Utilities/IpPic/ipPicClone.c
deleted file mode 100755
index 895bf7f51e..0000000000
--- a/Utilities/IpPic/ipPicClone.c
+++ /dev/null
@@ -1,141 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * creates the clone of a pic
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicClone\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-/**
- * creates the clone of a pic
- * @param pic the original pic
- *
- * @return the exact copy
- *
- *
- * AUTHOR & DATE
- *
- */
-
-mitkIpPicDescriptor *mitkIpPicClone( mitkIpPicDescriptor *pic )
-{
- mitkIpPicDescriptor *clone;
-
- clone = mitkIpPicCopyHeader( pic,
- NULL );
-
- strncpy( clone->info->version, pic->info->version, _mitkIpPicTAGLEN );
-
- clone->info->tags_head = _mitkIpPicCloneTags( pic->info->tags_head );
-
- clone->info->write_protect = pic->info->write_protect;
-
- if( !pic->data )
- {
- clone->data = NULL;
- }
- else
- {
- mitkIpUInt4_t size;
-
- size = _mitkIpPicSize( pic );
-
- clone->data = malloc( size );
- if ( ! ( clone->data ) )
- return NULL;
- memmove( clone->data, pic->data, size );
- }
-
- return( clone );
-}
-
-_mitkIpPicTagsElement_t *_mitkIpPicCloneTags( _mitkIpPicTagsElement_t *head )
-{
- _mitkIpPicTagsElement_t *new;
- _mitkIpPicTagsElement_t *current;
-
- new = NULL;
- current = head;
- while( current != NULL )
- {
- new = _mitkIpPicInsertTag( new, _mitkIpPicCloneTag(current->tsv) );
-
- current = current->next;
- }
- return( new );
-}
-
-mitkIpPicTSV_t *_mitkIpPicCloneTag( mitkIpPicTSV_t *source )
-{
- mitkIpPicTSV_t *new;
-
- mitkIpUInt4_t i;
-
- new = malloc( sizeof(mitkIpPicTSV_t) );
-
- strncpy( new->tag, source->tag, _mitkIpPicTAGLEN );
-
- new->type = source->type;
- new->bpe = source->bpe;
- new->dim = source->dim;
-
- for( i = 0; i < source->dim; i++ )
- new->n[i] = source->n[i];
-
- if( source->type == mitkIpPicTSV )
- {
- new->value = _mitkIpPicCloneTags( source->value );
- }
- else
- {
- mitkIpUInt4_t size;
-
- size = _mitkIpPicTSVSize( new );
-
- new->value = malloc( size );
- memmove( new->value, source->value, size );
- }
-
- return( new );
-}
diff --git a/Utilities/IpPic/ipPicCopyH.c b/Utilities/IpPic/ipPicCopyH.c
deleted file mode 100755
index 91093a56dc..0000000000
--- a/Utilities/IpPic/ipPicCopyH.c
+++ /dev/null
@@ -1,73 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/** @file
- * copys the header from a pic into a new pic
- */
-
-#ifndef lint
- static char *what = { "@(#)mitkIpPicCopyHeader\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-/** copys the header from a pic into a new pic
- *
- */
-
-mitkIpPicDescriptor *mitkIpPicCopyHeader( mitkIpPicDescriptor *pic, mitkIpPicDescriptor *pic_new )
-{
- mitkIpUInt4_t i;
-
- if( pic_new == NULL )
- pic_new = mitkIpPicNew();
-
- mitkIpPicClear( pic_new );
-
-
- pic_new->type = pic->type;
- pic_new->bpe = pic->bpe;
- pic_new->dim = pic->dim;
- for( i=0; i<pic_new->dim; i++ )
- pic_new->n[i] = pic->n[i];
-
- return( pic_new );
-}
diff --git a/Utilities/IpPic/ipPicCopyS.c b/Utilities/IpPic/ipPicCopyS.c
deleted file mode 100755
index e59d448877..0000000000
--- a/Utilities/IpPic/ipPicCopyS.c
+++ /dev/null
@@ -1,111 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/** @file
- * copys a slice from a pic into a new pic
- */
-
-/*$Log$
- *Revision 1.7 2002/11/13 17:53:00 ivo
- *new ipPic added.
- *
- *Revision 1.5 2002/04/23 11:06:25 ivo
- *mitkIpPicCopySlice behaves now in the same way as mitkIpPicGetSlice:
- *2D-slices are copied, no longer hyper-planes of dimension dim-1.
- *
- *Revision 1.4 2000/05/04 12:52:36 ivo
- *inserted BSD style license
- *
- *Revision 1.3 2000/05/04 12:35:58 ivo
- *some doxygen comments.
- *
- * Revision 1.2 1997/09/15 13:21:11 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:58 andre
- * initial import
- *
- * Revision 0.0 1993/06/07 19:19:19 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicCopySlice\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-mitkIpPicDescriptor *_mitkIpPicCopySlice( mitkIpPicDescriptor *pic, mitkIpPicDescriptor *pic_in, mitkIpUInt4_t slice )
-{
- mitkIpUInt4_t picsize;
-
- if( pic == NULL )
- pic = mitkIpPicNew();
-
- mitkIpPicClear( pic );
-
- pic->type = pic_in->type;
- pic->bpe = pic_in->bpe;
- pic->dim = 2;
- pic->n[0] = pic_in->n[0];
- pic->n[1] = pic_in->n[1];
- pic->data = NULL;
-
- picsize = _mitkIpPicSize(pic);
-
- if( slice < 1
- || slice > _mitkIpPicSize(pic_in) / picsize )
- {
- mitkIpPicClear(pic);
- return( pic );
- }
-
- pic->data = malloc( picsize );
-
- memmove( pic->data,
- &((char *)pic_in->data)[(slice-1) * picsize],
- picsize );
-
- return( pic );
-}
diff --git a/Utilities/IpPic/ipPicDelT.c b/Utilities/IpPic/ipPicDelT.c
deleted file mode 100755
index 7e860e6816..0000000000
--- a/Utilities/IpPic/ipPicDelT.c
+++ /dev/null
@@ -1,119 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/** @file
- * deletes a tsv from the pic
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicDelTag\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-/** deletes a tsv from the pic
- */
-
-
-
-static mitkIpPicTSV_t *_mitkIpPicRemoveTag( _mitkIpPicTagsElement_t **head,
- _mitkIpPicTagsElement_t *which,
- const char *tag );
-
-mitkIpPicTSV_t *
-mitkIpPicDelTag( mitkIpPicDescriptor *pic, const char *tag )
-{
- _mitkIpPicTagsElement_t *which;
-
- which = _mitkIpPicFindTag( pic->info->tags_head, tag );
-
- return( _mitkIpPicRemoveTag( &(pic->info->tags_head), which, tag ) );
-}
-
-mitkIpPicTSV_t *
-mitkIpPicDelSubTag( mitkIpPicTSV_t *parent, const char *tag )
-{
- _mitkIpPicTagsElement_t *which;
-
- if( parent->type != mitkIpPicTSV )
- return( NULL );
-
- which = _mitkIpPicFindTag( parent->value, tag );
-
- if( !which )
- return( NULL );
-
- if( which->tsv->type == mitkIpPicTSV )
- return( NULL );
-
- parent->n[0]--;
- return( _mitkIpPicRemoveTag( (_mitkIpPicTagsElement_t **)&(parent->value), which, tag ) );
-}
-
-mitkIpPicTSV_t *
-_mitkIpPicRemoveTag( _mitkIpPicTagsElement_t **head, _mitkIpPicTagsElement_t *which, const char *tag )
-{
- mitkIpPicTSV_t *tsv = NULL;
-
- if( which != NULL )
- {
- tsv = which->tsv;
-
- if( which->prev == NULL ) /* which is the current head */
- {
- *head = which->next;
-
- if( *head )
- (*head)->prev = NULL;
- }
- else if( which->next == NULL ) /* which is the current tail */
- {
- which->prev->next = NULL;
- }
- else /* which is somewhere if the list */
- {
- which->prev->next = which->next;
- which->next->prev = which->prev;
- }
-
- free( which );
- }
-
- return( tsv );
-}
diff --git a/Utilities/IpPic/ipPicElements.c b/Utilities/IpPic/ipPicElements.c
deleted file mode 100755
index c4e28f6381..0000000000
--- a/Utilities/IpPic/ipPicElements.c
+++ /dev/null
@@ -1,65 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/** @file
- * calculates number of Elements in the data
- */
-
-#ifndef lint
- static char *what = { "@(#)_mitkIpPicElements\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-mitkIpUInt4_t _mitkIpPicElements( mitkIpPicDescriptor *pic )
-{
- unsigned int i;
- mitkIpUInt4_t elements;
-
- if( pic->dim == 0 )
- return( 0 );
-
- elements = pic->n[0];
- for( i = 1; i < pic->dim; i++ )
- elements *= pic->n[i];
-
- return( elements );
-}
diff --git a/Utilities/IpPic/ipPicFree.c b/Utilities/IpPic/ipPicFree.c
deleted file mode 100755
index 7aa2abea49..0000000000
--- a/Utilities/IpPic/ipPicFree.c
+++ /dev/null
@@ -1,113 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * frees all space used by a picDescriptor
- *
- * $Log$
- * Revision 1.8 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.6 2000/05/04 12:52:37 ivo
- * inserted BSD style license
- *
- * Revision 1.5 2000/05/04 12:35:59 ivo
- * some doxygen comments.
- *
- * Revision 1.4 1998/09/16 18:37:34 andre
- * added mitkIpPicFreeTag
- *
- * Revision 1.3 1998/09/16 18:32:45 andre
- * *** empty log message ***
- *
- * Revision 1.2 1997/09/15 13:21:12 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:58 andre
- * initial import
- *
- * Revision 0.1 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicFree\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-void mitkIpPicFree( mitkIpPicDescriptor *pic )
-{
- if( pic != NULL )
- {
- mitkIpPicClear( pic );
-
- if( pic->info != NULL )
- {
- free( pic->info );
- }
-
- free( pic );
-
- pic = NULL;
- }
-}
-
-void
-mitkIpPicFreeTag( mitkIpPicTSV_t *tsv )
-{
- if( tsv )
- {
- if( tsv->value );
- free( tsv->value );
-
- free( tsv );
- }
-}
diff --git a/Utilities/IpPic/ipPicGet.c b/Utilities/IpPic/ipPicGet.c
deleted file mode 100755
index 5d80efef8a..0000000000
--- a/Utilities/IpPic/ipPicGet.c
+++ /dev/null
@@ -1,318 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * reads a PicFile from disk
- *
- * $Log$
- * Revision 1.16 2004/01/16 22:11:59 andre
- * big endian bug fix
- *
- * Revision 1.15 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.13 2002/02/27 09:02:56 andre
- * zlib changes
- *
- * Revision 1.12 2002/02/27 08:54:43 andre
- * zlib changes
- *
- * Revision 1.11 2000/05/04 12:52:37 ivo
- * inserted BSD style license
- *
- * Revision 1.10 2000/02/16 14:29:20 andre
- * *** empty log message ***
- *
- * Revision 1.9 1999/11/28 18:22:42 andre
- * *** empty log message ***
- *
- * Revision 1.8 1999/11/28 16:29:43 andre
- * *** empty log message ***
- *
- * Revision 1.7 1999/11/27 20:03:48 andre
- * *** empty log message ***
- *
- * Revision 1.6 1999/11/27 19:29:43 andre
- * *** empty log message ***
- *
- * Revision 1.5 1998/09/04 17:45:54 andre
- * *** empty log message ***
- *
- * Revision 1.4 1998/05/06 14:13:15 andre
- * added info->pixel_start_in_file
- *
- * Revision 1.3 1997/10/20 13:35:39 andre
- * *** empty log message ***
- *
- * Revision 1.2 1997/09/15 13:21:13 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:59 andre
- * initial import
- *
- * Revision 0.1 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicGet\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-mitkIpPicFile_t
-_mitkIpPicOpenPicFileIn( const char *path )
-{
- mitkIpPicFile_t infile;
-
- if( path == NULL )
- infile = stdin;
- else if( strcmp(path, "stdin") == 0 )
- infile = stdin;
- else
- infile = mitkIpPicFOpen( path, "rb" );
-
- if( !infile )
- {
- char buff[1024];
-
- sprintf( buff, "%s.gz", path );
-
- infile = mitkIpPicFOpen( buff, "rb" );
- }
-
- return( infile );
-}
-
-mitkIpPicDescriptor *
-mitkIpPicGet( const char *infile_name, mitkIpPicDescriptor *pic )
-{
- mitkIpPicFile_t infile;
-
- mitkIpPicTag_t tag_name;
- mitkIpUInt4_t len;
-
- mitkIpUInt4_t to_read;
-
- infile = _mitkIpPicOpenPicFileIn( infile_name );
-
- if( !infile )
- {
- /*ipPrintErr( "mitkIpPicGet: sorry, error opening infile\n" );*/
- return( NULL );
- }
-
- /* read infile */
- mitkIpPicFRead( tag_name, 1, 4, infile );
-
- if( strncmp( "\037\213", tag_name, 2 ) == 0 )
- {
- fprintf( stderr, "mitkIpPicGetHeader: sorry, can't read compressed file\n" );
- return( NULL );
- }
- else if( strncmp( mitkIpPicVERSION, tag_name, 4 ) != 0 )
- {
- if( pic == NULL )
- pic = _mitkIpPicOldGet( infile,
- NULL );
- else
- _mitkIpPicOldGet( infile,
- pic );
- if( infile != stdin )
- mitkIpPicFClose( infile );
- return( pic );
- }
-
- if( pic == NULL )
- pic = mitkIpPicNew();
-
- mitkIpPicClear( pic );
-
- mitkIpPicFRead( &(tag_name[4]), 1, sizeof(mitkIpPicTag_t)-4, infile );
- strncpy( pic->info->version, tag_name, _mitkIpPicTAGLEN );
-
- mitkIpPicFReadLE( &len, sizeof(mitkIpUInt4_t), 1, infile );
-
- mitkIpPicFReadLE( &(pic->type), sizeof(mitkIpUInt4_t), 1, infile );
- mitkIpPicFReadLE( &(pic->bpe), sizeof(mitkIpUInt4_t), 1, infile );
- mitkIpPicFReadLE( &(pic->dim), sizeof(mitkIpUInt4_t), 1, infile );
-
- mitkIpPicFReadLE( &(pic->n), sizeof(mitkIpUInt4_t), pic->dim, infile );
-
-
- to_read = len - 3 * sizeof(mitkIpUInt4_t)
- - pic->dim * sizeof(mitkIpUInt4_t);
-#if 0
- mitkIpPicFSeek( infile, to_read, SEEK_CUR );
-#else
- pic->info->tags_head = _mitkIpPicReadTags( pic->info->tags_head, to_read, infile, mitkIpPicEncryptionType(pic) );
-#endif
-
- pic->info->write_protect = mitkIpFalse;
-
-#ifdef WIN
- if ((pic->hdata = GlobalAlloc( GMEM_MOVEABLE, _mitkIpPicSize(pic) )) != 0)
- pic->data = GlobalLock( pic->hdata );
-#else
- pic->data = malloc( _mitkIpPicSize(pic) );
-#endif
-
- pic->info->pixel_start_in_file = mitkIpPicFTell( infile );
- if( pic->type == mitkIpPicNonUniform )
- mitkIpPicFRead( pic->data, pic->bpe / 8, _mitkIpPicElements(pic), infile );
- else
- mitkIpPicFReadLE( pic->data, pic->bpe / 8, _mitkIpPicElements(pic), infile );
-
- if( infile != stdin )
- mitkIpPicFClose( infile );
-
-#ifdef WIN
- GlobalUnlock( pic->hdata );
-#endif
-
- return( pic );
-}
-
-_mitkIpPicTagsElement_t *
-_mitkIpPicReadTags( _mitkIpPicTagsElement_t *head, mitkIpUInt4_t bytes_to_read, FILE *stream, char encryption_type )
-{
- while( bytes_to_read > 0 )
- {
- mitkIpPicTSV_t *tsv;
-
- mitkIpPicTag_t tag_name;
- mitkIpUInt4_t len;
-
- /*printf( "bytes_to_read: %i\n", bytes_to_read ); */
-
- tsv = malloc( sizeof(mitkIpPicTSV_t) );
-
- mitkIpPicFRead( &tag_name, 1, sizeof(mitkIpPicTag_t), stream );
- strncpy( tsv->tag, tag_name, _mitkIpPicTAGLEN );
- tsv->tag[_mitkIpPicTAGLEN] = '\0';
-
- mitkIpPicFReadLE( &len, sizeof(mitkIpUInt4_t), 1, stream );
-
- mitkIpPicFReadLE( &(tsv->type), sizeof(mitkIpUInt4_t), 1, stream );
- mitkIpPicFReadLE( &(tsv->bpe), sizeof(mitkIpUInt4_t), 1, stream );
- mitkIpPicFReadLE( &(tsv->dim), sizeof(mitkIpUInt4_t), 1, stream );
-
-
- mitkIpPicFReadLE( &(tsv->n), sizeof(mitkIpUInt4_t), tsv->dim, stream );
-
- /*printf( "%.*s\n", _mitkIpPicTAGLEN, tsv->tag );
- printf( " %i\n", len );
- printf( " %i %i %i %i %i\n",
- tsv->type,
- tsv->bpe,
- tsv->dim,
- tsv->n[0],
- tsv->n[1] ); */
-
- if( tsv->type == mitkIpPicTSV )
- {
- tsv->value = NULL;
- tsv->value = _mitkIpPicReadTags( tsv->value,
- len - 3 * sizeof(mitkIpUInt4_t)
- - tsv->dim * sizeof(mitkIpUInt4_t),
- stream,
- encryption_type );
- }
- else
- {
- mitkIpUInt4_t elements;
-
- elements = _mitkIpPicTSVElements( tsv );
-
- if( tsv->type == mitkIpPicASCII
- || tsv->type == mitkIpPicNonUniform )
- tsv->bpe = 8;
-
-assert( elements * tsv->bpe / 8 == len
- - 3 * sizeof(mitkIpUInt4_t)
- - tsv->dim * sizeof(mitkIpUInt4_t) );
-
- if( tsv->type == mitkIpPicASCII )
- tsv->value = malloc( elements+1 * tsv->bpe / 8 );
- else
- tsv->value = malloc( elements * tsv->bpe / 8 );
-
- mitkIpPicFReadLE( tsv->value, tsv->bpe / 8, elements, stream );
-
- if( tsv->type == mitkIpPicASCII )
- ((char *)(tsv->value))[elements] = '\0';
-
- if( encryption_type == 'e'
- && ( tsv->type == mitkIpPicASCII
- || tsv->type == mitkIpPicNonUniform ) )
- {
- if( tsv->type == mitkIpPicNonUniform )
- {
- sprintf( tsv->tag, "*** ENCRYPTED ***" );
- tsv->tag[_mitkIpPicTAGLEN] = '\0';
- }
-
- free( tsv->value );
-
- tsv->value = strdup( "*** ENCRYPTED ***" );
- tsv->n[0] = strlen(tsv->value);
- tsv->type = mitkIpPicASCII;
- tsv->dim = 1;
- }
- }
-
- head = _mitkIpPicInsertTag( head, tsv );
-
- bytes_to_read -= 32 /* name */
- + sizeof(mitkIpUInt4_t) /* len */
- + len; /* type + bpe + dim + n[] + data */
- }
- return( head );
-}
diff --git a/Utilities/IpPic/ipPicGetH.c b/Utilities/IpPic/ipPicGetH.c
deleted file mode 100755
index ef0b36f5d1..0000000000
--- a/Utilities/IpPic/ipPicGetH.c
+++ /dev/null
@@ -1,155 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * reads the Header of a PicFile from disk
- *
- * $Log$
- * Revision 1.10 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.8 2000/05/04 12:52:37 ivo
- * inserted BSD style license
- *
- * Revision 1.7 2000/05/04 12:35:59 ivo
- * some doxygen comments.
- *
- * Revision 1.6 1999/11/28 16:27:21 andre
- * *** empty log message ***
- *
- * Revision 1.5 1999/11/28 00:36:09 andre
- * *** empty log message ***
- *
- * Revision 1.4 1999/11/27 20:02:41 andre
- * *** empty log message ***
- *
- * Revision 1.3 1999/11/27 19:15:26 andre
- * *** empty log message ***
- *
- * Revision 1.2 1997/09/15 13:21:13 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:59 andre
- * initial import
- *
- * Revision 0.1 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicGetHeader\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-mitkIpPicDescriptor *
-mitkIpPicGetHeader( const char *infile_name, mitkIpPicDescriptor *pic )
-{
- mitkIpPicFile_t infile;
-
- mitkIpPicTag_t tag_name;
- mitkIpUInt4_t len;
-
- infile = _mitkIpPicOpenPicFileIn( infile_name );
-
- if( infile == NULL )
- {
- /*ipPrintErr( "mitkIpPicGetHeader: sorry, error opening infile\n" );*/
- return( NULL );
- }
-
- /* read infile */
- mitkIpPicFRead( &(tag_name[0]), 1, 4, infile );
-
- if( strncmp( "\037\213", tag_name, 2 ) == 0 )
- {
- fprintf( stderr, "mitkIpPicGetHeader: sorry, can't read compressed file\n" );
- return( NULL );
- }
- else if( strncmp( mitkIpPicVERSION, tag_name, 4 ) != 0 )
- {
- /*
- if( pic == NULL )
- pic = _mitkIpPicOldGetHeader( infile,
- NULL );
- else
- _mitkIpPicOldGetHeader( infile,
- pic );
- if( infile != stdin )
- mitkIpPicFClose( infile );
- return( pic );
- */
- return ( NULL );
- }
-
- if( pic == NULL )
- pic = mitkIpPicNew();
-
- mitkIpPicClear( pic );
-
- pic->info->write_protect = mitkIpTrue;
-
- mitkIpPicFRead( &(tag_name[4]), 1, sizeof(mitkIpPicTag_t)-4, infile );
- strncpy( pic->info->version, tag_name, _mitkIpPicTAGLEN );
-
- mitkIpPicFReadLE( &len, sizeof(mitkIpUInt4_t), 1, infile );
-
- mitkIpPicFReadLE( &(pic->type), sizeof(mitkIpUInt4_t), 1, infile );
- mitkIpPicFReadLE( &(pic->bpe), sizeof(mitkIpUInt4_t), 1, infile );
- mitkIpPicFReadLE( &(pic->dim), sizeof(mitkIpUInt4_t), 1, infile );
-
- mitkIpPicFReadLE( &(pic->n), sizeof(mitkIpUInt4_t), pic->dim, infile );
-
-
- if( infile != stdin )
- mitkIpPicFClose( infile );
-
- return( pic );
-}
diff --git a/Utilities/IpPic/ipPicGetMem.c b/Utilities/IpPic/ipPicGetMem.c
deleted file mode 100755
index 880857318b..0000000000
--- a/Utilities/IpPic/ipPicGetMem.c
+++ /dev/null
@@ -1,219 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/*
- *--------------------------------------------------------------------
- * DESCRIPTION
- * creates a PicStructure from memory block
- *
- * FUNCTION DECLARATION
- *
- *
- * PARAMETERS
- *
- *
- * AUTHOR & DATE
- * Harald Evers 15.7.98
- *
- * UPDATES
- *
- *--------------------------------------------------------------------
- *
- */
-
-#ifndef lint
- static char *what = { "@(#)mitkIpPicGetMem\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-mitkIpPicDescriptor *mitkIpPicGetMem( mitkIpUInt1_t *mem_pic )
-{
- mitkIpPicDescriptor *pic;
- mitkIpUInt4_t len;
- mitkIpUInt4_t to_read;
- mitkIpUInt1_t *mem_ptr = mem_pic;
-
- if( !mem_pic )
- return( NULL );
-
- pic = mitkIpPicNew();
- mitkIpPicClear( pic );
- memmove( &(pic->info->version), mem_ptr, sizeof(mitkIpPicTag_t) );
- mem_ptr += sizeof(mitkIpPicTag_t);
- if( strncmp( mitkIpPicVERSION, pic->info->version, 4 ) != 0 )
- {
- mitkIpPicFree( pic );
- return( NULL );
- }
-
- /*memmove( &len, mem_ptr, sizeof(mitkIpUInt4_t) );*/
- mitkIpCpFromLE( mem_ptr, &len, sizeof(mitkIpUInt4_t), sizeof(mitkIpUInt4_t) );
- mem_ptr += sizeof(mitkIpUInt4_t);
-
- /*memmove( &(pic->type), mem_ptr, sizeof(mitkIpUInt4_t) );*/
- mitkIpCpFromLE( mem_ptr, &(pic->type), sizeof(mitkIpUInt4_t), sizeof(mitkIpUInt4_t) );
- mem_ptr += sizeof(mitkIpUInt4_t);
-
- /*memmove( &(pic->bpe), mem_ptr, sizeof(mitkIpUInt4_t) );*/
- mitkIpCpFromLE( mem_ptr, &(pic->bpe), sizeof(mitkIpUInt4_t), sizeof(mitkIpUInt4_t) );
- mem_ptr += sizeof(mitkIpUInt4_t);
-
- /*memmove( &(pic->dim), mem_ptr, sizeof(mitkIpUInt4_t) );*/
- mitkIpCpFromLE( mem_ptr, &(pic->dim), sizeof(mitkIpUInt4_t), sizeof(mitkIpUInt4_t) );
- mem_ptr += sizeof(mitkIpUInt4_t);
-
- /*memmove( &(pic->n), mem_ptr, pic->dim * sizeof(mitkIpUInt4_t) );*/
- mitkIpCpFromLE( mem_ptr, &(pic->n), pic->dim*sizeof(mitkIpUInt4_t), sizeof(mitkIpUInt4_t) );
- mem_ptr += pic->dim*sizeof(mitkIpUInt4_t);
-
- to_read = len - 3 * sizeof(mitkIpUInt4_t)
- - pic->dim * sizeof(mitkIpUInt4_t);
- pic->info->tags_head = _mitkIpPicReadTagsMem( pic->info->tags_head,
- to_read, &mem_ptr,
- mitkIpPicEncryptionType(pic) );
-
- pic->info->write_protect = mitkIpFalse;
- pic->data = malloc( _mitkIpPicSize(pic) );
-
- /*
- pic->info->pixel_start_in_file = ftell( infile );
- */
-
- /*memmove( pic->data, mem_ptr, pic->bpe/8*_mitkIpPicElements(pic) );*/
- mitkIpCpFromLE( mem_ptr, pic->data, _mitkIpPicSize(pic), pic->bpe/8 );
-
- return( pic );
-}
-
-_mitkIpPicTagsElement_t *
-_mitkIpPicReadTagsMem( _mitkIpPicTagsElement_t *head, mitkIpUInt4_t bytes_to_read,
- mitkIpUInt1_t **mem_ptr, char encryption_type )
-{
- while( bytes_to_read > 0 )
- {
- mitkIpPicTSV_t *tsv;
- mitkIpUInt4_t len;
-
- tsv = malloc( sizeof(mitkIpPicTSV_t) );
-
- memmove( tsv->tag, *mem_ptr, _mitkIpPicTAGLEN );
- tsv->tag[_mitkIpPicTAGLEN] = '\0';
- *mem_ptr += _mitkIpPicTAGLEN;
-
- /*memmove( &len, *mem_ptr, sizeof(mitkIpUInt4_t) );*/
- mitkIpCpFromLE( *mem_ptr, &len, sizeof(mitkIpUInt4_t), sizeof(mitkIpUInt4_t) );
- *mem_ptr += sizeof(mitkIpUInt4_t);
-
- /*memmove( &(tsv->type), *mem_ptr, sizeof(mitkIpUInt4_t) );*/
- mitkIpCpFromLE( *mem_ptr, &(tsv->type), sizeof(mitkIpUInt4_t), sizeof(mitkIpUInt4_t) );
- *mem_ptr += sizeof(mitkIpUInt4_t);
-
- /*memmove( &(tsv->bpe), *mem_ptr, sizeof(mitkIpUInt4_t) );*/
- mitkIpCpFromLE( *mem_ptr, &(tsv->bpe), sizeof(mitkIpUInt4_t), sizeof(mitkIpUInt4_t) );
- *mem_ptr += sizeof(mitkIpUInt4_t);
-
- /*memmove( &(tsv->dim), *mem_ptr, sizeof(mitkIpUInt4_t) );*/
- mitkIpCpFromLE( *mem_ptr, &(tsv->dim), sizeof(mitkIpUInt4_t), sizeof(mitkIpUInt4_t) );
- *mem_ptr += sizeof(mitkIpUInt4_t);
-
- /*memmove( &(tsv->n), *mem_ptr, tsv->dim*sizeof(mitkIpUInt4_t) );*/
- mitkIpCpFromLE( *mem_ptr, &(tsv->n), tsv->dim*sizeof(mitkIpUInt4_t), sizeof(mitkIpUInt4_t) );
- *mem_ptr += tsv->dim*sizeof(mitkIpUInt4_t);
-
- if( tsv->type == mitkIpPicTSV )
- {
- tsv->value = NULL;
- tsv->value = _mitkIpPicReadTagsMem( tsv->value,
- len - 3 * sizeof(mitkIpUInt4_t)
- - tsv->dim * sizeof(mitkIpUInt4_t),
- mem_ptr,
- encryption_type );
- }
- else
- {
- mitkIpUInt4_t elements;
-
- elements = _mitkIpPicTSVElements( tsv );
-
- if( tsv->type == mitkIpPicASCII
- || tsv->type == mitkIpPicNonUniform )
- tsv->bpe = 8;
-
- if( tsv->type == mitkIpPicASCII )
- tsv->value = malloc( (elements+1) * (tsv->bpe / 8) );
- else
- tsv->value = malloc( elements * tsv->bpe / 8 );
-
- /*memmove( tsv->value, *mem_ptr, tsv->bpe/8*_mitkIpPicTSVElements(tsv) );*/
- mitkIpCpFromLE( *mem_ptr, tsv->value, _mitkIpPicTSVSize(tsv), tsv->bpe/8 );
- *mem_ptr += tsv->bpe/8*_mitkIpPicTSVElements(tsv);
-
- if( tsv->type == mitkIpPicASCII )
- ((char *)(tsv->value))[elements] = '\0';
-
- if( encryption_type == 'e'
- && ( tsv->type == mitkIpPicASCII
- || tsv->type == mitkIpPicNonUniform ) )
- {
- if( tsv->type == mitkIpPicNonUniform )
- {
- sprintf( tsv->tag, "*** ENCRYPTED ***" );
- tsv->tag[_mitkIpPicTAGLEN] = '\0';
- }
-
- if( tsv->value )
- free( tsv->value );
-
- tsv->value = strdup( "*** ENCRYPTED ***" );
- tsv->n[0] = (mitkIpUInt4_t)strlen(tsv->value);
- tsv->type = mitkIpPicASCII;
- tsv->dim = 1;
- }
- }
-
- head = _mitkIpPicInsertTag( head, tsv );
-
- bytes_to_read -= 32 /* name */
- + sizeof(mitkIpUInt4_t) /* len */
- + len; /* type + bpe + dim + n[] + data */
- }
- return( head );
-}
diff --git a/Utilities/IpPic/ipPicGetS.c b/Utilities/IpPic/ipPicGetS.c
deleted file mode 100755
index d0fc1495d7..0000000000
--- a/Utilities/IpPic/ipPicGetS.c
+++ /dev/null
@@ -1,208 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * reads a slice from a PicFile
- *
- * $Log$
- * Revision 1.12 2006/03/03 14:07:58 maleike
- * try to fix warning "cast from pointer to integer of different size"
- *
- * Revision 1.11 2005/10/09 08:56:31 ivo
- * FIX: warning: comparison between pointer and integer
- *
- * Revision 1.10 2003/02/25 16:16:53 andre
- * *** empty log message ***
- *
- * Revision 1.9 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.7 2002/02/27 09:05:15 andre
- * zlib changes
- *
- * Revision 1.6 2002/02/27 09:02:56 andre
- * zlib changes
- *
- * Revision 1.5 2002/02/27 08:54:43 andre
- * zlib changes
- *
- * Revision 1.4 2000/05/04 12:52:38 ivo
- * inserted BSD style license
- *
- * Revision 1.3 2000/05/04 12:35:59 ivo
- * some doxygen comments.
- *
- * Revision 1.2 1997/09/15 13:21:14 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:59 andre
- * initial import
- *
- * Revision 0.1 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.0 1993/03/31 11:26:16 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicGetSlice\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-mitkIpPicDescriptor *mitkIpPicGetSlice( const char *infile_name, mitkIpPicDescriptor *pic, mitkIpUInt4_t slice )
-{
- mitkIpPicFile_t infile;
-
- mitkIpPicTag_t tag_name;
- mitkIpUInt4_t len;
- mitkIpUInt4_t skip;
-
- int number = 1;
-
- unsigned long int picsize;
-
- if( infile_name == NULL )
- infile = stdin;
- else if( strcmp(infile_name, "stdin") == 0 )
- infile = stdin;
- else
- infile = _mitkIpPicOpenPicFileIn( infile_name );
-
- if( infile == NULL )
- {
- /*ipPrintErr( "mitkIpPicGetSlice: sorry, error opening infile\n" );*/
- return( NULL );
- }
-
- /* read infile */
- mitkIpPicFRead( &(tag_name[0]), 1, 4, infile );
-
- if( strncmp( mitkIpPicVERSION, tag_name, 4 ) != 0 )
- {
- if( pic == NULL )
- pic = _mitkIpPicOldGetSlice( infile,
- NULL,
- slice );
- else
- _mitkIpPicOldGetSlice( infile,
- pic,
- slice );
- if( infile != stdin )
- mitkIpPicFClose( infile );
- return( pic );
- }
-
-
- if( (void*)pic == (void*)3 )
- {
- pic = NULL;
- number = 3;
- }
-
- if( pic == NULL )
- pic = mitkIpPicNew();
-
- mitkIpPicClear( pic );
-
- mitkIpPicFRead( &(tag_name[4]), 1, sizeof(mitkIpPicTag_t)-4, infile );
- strncpy( pic->info->version, tag_name, _mitkIpPicTAGLEN );
-
- mitkIpPicFReadLE( &len, sizeof(mitkIpUInt4_t), 1, infile );
-
- mitkIpPicFReadLE( &(pic->type), sizeof(mitkIpUInt4_t), 1, infile );
- mitkIpPicFReadLE( &(pic->bpe), sizeof(mitkIpUInt4_t), 1, infile );
- mitkIpPicFReadLE( &(pic->dim), sizeof(mitkIpUInt4_t), 1, infile );
-
- mitkIpPicFReadLE( &(pic->n), sizeof(mitkIpUInt4_t), pic->dim, infile );
-
- skip = len - 3 * sizeof(mitkIpUInt4_t)
- - pic->dim * sizeof(mitkIpUInt4_t);
- mitkIpPicFSeek( infile, skip, SEEK_CUR );
-
- picsize = _mitkIpPicSize(pic);
-
- pic->dim = 2;
-
- if( slice < 1
- || slice > picsize / _mitkIpPicSize(pic) )
- {
- mitkIpPicClear( pic );
- return( pic );
- }
-
- if( number < 1 )
- number = 1;
-
- if( slice + number - 1 > pic->n[2] )
- number = pic->n[2] - slice + 1;
-
-
- pic->info->write_protect = mitkIpTrue;
-
- picsize = _mitkIpPicSize(pic);
-
- mitkIpPicFSeek( infile, picsize * (slice - 1), SEEK_CUR );
-
- if( number > 1 )
- {
- pic->dim = 3;
- pic->n[2] = number;
- }
-
- picsize = _mitkIpPicSize(pic);
-
- pic->data = malloc( picsize );
-
- mitkIpPicFReadLE( pic->data, pic->bpe / 8, _mitkIpPicElements(pic), infile );
-
- if( infile != stdin )
- mitkIpPicFClose( infile );
-
- return( pic );
-}
diff --git a/Utilities/IpPic/ipPicGetT.c b/Utilities/IpPic/ipPicGetT.c
deleted file mode 100755
index ff7da68e6a..0000000000
--- a/Utilities/IpPic/ipPicGetT.c
+++ /dev/null
@@ -1,152 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * reads a tag from a PicFile
- *
- * $Log$
- * Revision 1.12 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.10 2000/05/04 12:52:38 ivo
- * inserted BSD style license
- *
- * Revision 1.9 2000/05/04 12:35:59 ivo
- * some doxygen comments.
- *
- * Revision 1.8 1999/11/28 18:21:37 andre
- * *** empty log message ***
- *
- * Revision 1.7 1999/11/28 16:27:21 andre
- * *** empty log message ***
- *
- * Revision 1.6 1999/11/28 00:36:09 andre
- * *** empty log message ***
- *
- * Revision 1.5 1999/11/27 19:32:13 andre
- * *** empty log message ***
- *
- * Revision 1.2.2.2 1998/03/25 15:03:36 andre
- * added info->pixel_start_in_file
- *
- * Revision 1.2.2.1 1997/09/15 13:47:06 andre
- * added encryption
- *
- * Revision 1.2 1997/09/15 13:21:14 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:59 andre
- * initial import
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicGetTag\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-mitkIpPicDescriptor *
-mitkIpPicGetTags( const char *infile_name, mitkIpPicDescriptor *pic )
-{
- mitkIpPicFile_t infile;
-
- mitkIpPicTag_t tag_name;
- mitkIpUInt4_t dummy;
- mitkIpUInt4_t len;
- mitkIpUInt4_t dim;
- mitkIpUInt4_t n[_mitkIpPicNDIM];
-
- mitkIpUInt4_t to_read;
-
- infile = _mitkIpPicOpenPicFileIn( infile_name );
-
- if( infile == NULL )
- {
- /*ipPrintErr( "mitkIpPicGetTags: sorry, error opening infile\n" );*/
- return( NULL );
- }
-
- if( pic != NULL )
- pic->info->write_protect = mitkIpFalse;
-
- /* read infile */
- mitkIpPicFRead( &(tag_name[0]), 1, 4, infile );
-
- if( strncmp( mitkIpPicVERSION, tag_name, 4 ) != 0 )
- {
- if( infile != stdin )
- mitkIpPicFClose( infile );
- return( pic );
- }
-
- if( pic == NULL )
- pic = mitkIpPicNew();
-
- mitkIpPicFRead( &(tag_name[4]), 1, sizeof(mitkIpPicTag_t)-4, infile );
- /*strncpy( pic->info->version, tag_name, _mitkIpPicTAGLEN );*/
-
- mitkIpPicFReadLE( &len, sizeof(mitkIpUInt4_t), 1, infile );
-
- mitkIpPicFReadLE( &dummy, sizeof(mitkIpUInt4_t), 1, infile );
- mitkIpPicFReadLE( &dummy, sizeof(mitkIpUInt4_t), 1, infile );
- mitkIpPicFReadLE( &dim, sizeof(mitkIpUInt4_t), 1, infile );
-
- mitkIpPicFReadLE( n, sizeof(mitkIpUInt4_t), dim, infile );
-
-
- to_read = len - 3 * sizeof(mitkIpUInt4_t)
- - dim * sizeof(mitkIpUInt4_t);
-
- pic->info->tags_head = _mitkIpPicReadTags( pic->info->tags_head, to_read, infile, mitkIpPicEncryptionType(pic) );
-
- pic->info->pixel_start_in_file = mitkIpPicFTell( infile );
-
- if( infile != stdin )
- mitkIpPicFClose( infile );
-
- return( pic );
-}
diff --git a/Utilities/IpPic/ipPicInfo.c b/Utilities/IpPic/ipPicInfo.c
deleted file mode 100755
index ef2580f9ec..0000000000
--- a/Utilities/IpPic/ipPicInfo.c
+++ /dev/null
@@ -1,249 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * prints information about an mitkIpPicDescriptor
- */
-
-#ifndef lint
- static char *what = { "@(#)_mitkIpPicInfo\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-/** prints information about an mitkIpPicDescriptor
- *
- * @param stream the output FILE*
- * @param pic the pic
- * @param flags which information to show
- *
- * @return none
- *
- * AUTHOR & DATE
- * Andre Schroeter 03.10.94
- *
- */
-
-
-#define INT_MAXIMUM 5
-#define ASCII_MAX 60
-
-/*
-** private macros
-*/
-#define Min(x, y) (((x) < (y)) ? (x) : (y))
-#define Max(x, y) (((x) > (y)) ? (x) : (y))
-
-void _mitkIpPicInfo( FILE *stream, mitkIpPicDescriptor *pic, mitkIpUInt4_t flags )
-{
- mitkIpUInt4_t i;
-
- fprintf( stream, "%.*s\n", _mitkIpPicTAGLEN, pic->info->version );
- fprintf( stream, "--------------------\n" );
-
- fprintf( stream, "type: %s [%i]\n", mitkIpPicTypeName(pic->type), pic->type );
-
- fprintf( stream, "bpe : %i\n", pic->bpe );
-
- fprintf( stream, "dim : %i ", pic->dim );
- for( i=0; i<pic->dim; i++ )
- fprintf( stream, "[%i] ", pic->n[i] );
- fprintf( stream, "\n" );
-
- if( pic != NULL
- && pic->info->tags_head != NULL )
- fprintf( stream, "--------------------\n" );
-
- _mitkIpPicInfoPrintTags( stream,
- pic->info->tags_head,
- 1,
- flags );
-
- fprintf( stream, "--------------------\n" );
- fprintf( stream, "size of the image data: %u\n", _mitkIpPicSize( pic ) );
-}
-
-void _mitkIpPicInfoPrintTags( FILE *stream, _mitkIpPicTagsElement_t* head, mitkIpUInt4_t level, mitkIpUInt4_t flags )
-{
- mitkIpUInt4_t i;
- _mitkIpPicTagsElement_t *current;
-
- char *indent;
-
- indent = malloc( level*4 + 1 );
- for( i = 0; i < level*4-2; i++ )
- indent[i] = ' ';
- indent[i] = '\0';
-
- current = head;
- while( current != NULL )
- {
- fprintf( stream, "%s%.*s\n", indent, _mitkIpPicTAGLEN, current->tsv->tag );
- if( !(flags & _mitkIpPicInfoSHORT) )
- {
- fprintf( stream, "%s type: %s [%i]\n", indent,
- mitkIpPicTypeName(current->tsv->type), current->tsv->type );
- fprintf( stream, "%s bpe : %i\n", indent, current->tsv->bpe );
- fprintf( stream, "%s dim : %i ", indent, current->tsv->dim );
-
- for( i=0; i<current->tsv->dim; i++ )
- fprintf( stream, "[%i] ", current->tsv->n[i] );
- fprintf( stream, "\n" );
- }
-
- if( current->tsv->type == mitkIpPicTSV )
- {
- _mitkIpPicInfoPrintTags( stream,
- current->tsv->value,
- level+1,
- flags );
- }
- else
- {
- fprintf( stream, "%s value : ", indent );
-
- switch( current->tsv->type )
- {
- case mitkIpPicASCII:
- if( current->tsv->n[0] > ASCII_MAX )
- fprintf( stream, "\"%.*s\"...\n",
- ASCII_MAX,
- (char *)current->tsv->value );
- else
- fprintf( stream, "\"%.*s\"\n",
- (int)current->tsv->n[0],
- (char *)current->tsv->value );
- break;
- case mitkIpPicUInt:
- for( i = 0; i < Min( INT_MAXIMUM, current->tsv->n[0] ); i++ )
- switch( current->tsv->bpe )
- {
- case 8:
- fprintf( stream, "%3u ",
- ((mitkIpUInt1_t *)current->tsv->value)[i] );
- break;
- case 16:
- fprintf( stream, "%5u ",
- ((mitkIpUInt2_t *)current->tsv->value)[i] );
- break;
- case 32:
- fprintf( stream, "%11u ",
- ((mitkIpUInt4_t *)current->tsv->value)[i] );
- break;
- default:
- fprintf( stream, "???" );
- break;
- }
- if( current->tsv->n[0] > INT_MAXIMUM )
- fprintf( stream, "..." );
- fprintf( stream, "\n" );
- if( current->tsv->dim > 1 )
- {
- fprintf( stream, "%s .\n", indent );
- fprintf( stream, "%s .\n", indent );
- fprintf( stream, "%s .\n", indent );
- }
- break;
- case mitkIpPicInt:
- for( i = 0; i < Min( INT_MAXIMUM, current->tsv->n[0] ); i++ )
- switch( current->tsv->bpe )
- {
- case 8:
- fprintf( stream, "%3i ",
- ((mitkIpInt1_t *)current->tsv->value)[i] );
- break;
- case 16:
- fprintf( stream, "%5i ",
- ((mitkIpInt2_t *)current->tsv->value)[i] );
- break;
- case 32:
- fprintf( stream, "%11i ",
- ((mitkIpInt4_t *)current->tsv->value)[i] );
- break;
- default:
- fprintf( stream, "???" );
- break;
- }
- if( current->tsv->n[0] > INT_MAXIMUM )
- fprintf( stream, "..." );
- fprintf( stream, "\n" );
- if( current->tsv->dim > 1 )
- {
- fprintf( stream, "%s .\n", indent );
- fprintf( stream, "%s .\n", indent );
- fprintf( stream, "%s .\n", indent );
- }
- break;
- case mitkIpPicFloat:
- for( i = 0; i < Min( INT_MAXIMUM, current->tsv->n[0] ); i++ )
- switch( current->tsv->bpe )
- {
- case 32:
- fprintf( stream, "%5.5f ",
- ((mitkIpFloat4_t *)current->tsv->value)[i] );
- break;
- case 64:
- fprintf( stream, "%5.5f ",
- ((mitkIpFloat8_t *)current->tsv->value)[i] );
- break;
- default:
- fprintf( stream, "???" );
- break;
- }
- if( current->tsv->n[0] > INT_MAXIMUM )
- fprintf( stream, "..." );
- fprintf( stream, "\n" );
- if( current->tsv->dim > 1 )
- {
- fprintf( stream, "%s .\n", indent );
- fprintf( stream, "%s .\n", indent );
- fprintf( stream, "%s .\n", indent );
- }
- break;
- default:
- fprintf( stream, "???\n" );
- break;
- }
- }
-
- current = current->next;
- }
- free( indent );
-}
diff --git a/Utilities/IpPic/ipPicNew.c b/Utilities/IpPic/ipPicNew.c
deleted file mode 100755
index 7e1045c51c..0000000000
--- a/Utilities/IpPic/ipPicNew.c
+++ /dev/null
@@ -1,105 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * Allocates memory for a new PicDescriptor
- *
- * $Log$
- * Revision 1.7 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.5 2000/05/04 12:52:39 ivo
- * inserted BSD style license
- *
- * Revision 1.4 2000/05/04 12:36:00 ivo
- * some doxygen comments.
- *
- * Revision 1.3 1999/11/27 19:15:08 andre
- * *** empty log message ***
- *
- * Revision 1.2 1997/09/15 13:21:16 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:59 andre
- * initial import
- *
- * Revision 0.0 1993/04/06 09:54:58 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicNew\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-mitkIpPicDescriptor *mitkIpPicNew( void )
-{
- mitkIpPicDescriptor *pic;
-
- pic = malloc( sizeof(mitkIpPicDescriptor) );
-
- if( pic != NULL )
- {
- pic->data = NULL;
- pic->type = mitkIpPicUnknown;
-
- pic->info = malloc( sizeof(_mitkIpPicInfo_t) );
-
- strncpy( pic->info->version, mitkIpPicVERSION, _mitkIpPicTAGLEN );
-
- pic->info->tags_head = NULL;
-
- pic->info->write_protect = mitkIpFalse;
- pic->info->pixel_start_in_file = 0;
- pic->info->lender = 0;
- pic->info->borrower = 0;
- pic->info->ref = 1;
- }
-
- return( pic );
-}
diff --git a/Utilities/IpPic/ipPicNewT.c b/Utilities/IpPic/ipPicNewT.c
deleted file mode 100755
index 502317ed36..0000000000
--- a/Utilities/IpPic/ipPicNewT.c
+++ /dev/null
@@ -1,77 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * reads a tag from a PicFile
- *
- * $Log$
- * Revision 1.6 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.4 2000/05/04 12:52:39 ivo
- * inserted BSD style license
- *
- * Revision 1.3 2000/05/04 12:36:00 ivo
- * some doxygen comments.
- *
- * Revision 1.2 1997/09/15 13:21:16 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:59 andre
- * initial import
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicNewTag\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-mitkIpPicTSV *mitkIpPicNewTag( )
-{
-
-}
diff --git a/Utilities/IpPic/ipPicOldGet.c b/Utilities/IpPic/ipPicOldGet.c
deleted file mode 100755
index a3ea61fcd2..0000000000
--- a/Utilities/IpPic/ipPicOldGet.c
+++ /dev/null
@@ -1,167 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * reads a oldstyle PicFile from disk
- *
- * $Log$
- * Revision 1.7 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.5 2000/05/04 12:52:39 ivo
- * inserted BSD style license
- *
- * Revision 1.4 2000/05/04 12:36:00 ivo
- * some doxygen comments.
- *
- * Revision 1.3 2000/01/13 14:03:07 andre
- * *** empty log message ***
- *
- * Revision 1.2 1997/09/15 13:21:17 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:59 andre
- * initial import
- *
- * Revision 0.2 1993/04/26 17:40:09 andre
- * 8 bit images from old pic format are now unsigned
- *
- * Revision 0.1 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)_mitkIpPicOldGet\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-#ifdef DOS
-#include "mitkIpPicOP.h"
-#else
-#include "mitkIpPicOldP.h"
-#endif
-
-mitkIpPicDescriptor * _mitkIpPicOldGet( FILE *infile, mitkIpPicDescriptor *pic )
-{
- _mitkIpPicOldHeader old_pic;
-#ifdef WIN
- HANDLE hbuff;
-#endif
-
- /*unsigned char *text;*/
- void *buff;
-
- unsigned long int elements;
-
- /* read infile */
- size_t ignored = mitkIpFReadLE( &(old_pic.dummy1), sizeof(mitkIpUInt4_t), 4, infile );
- if( old_pic.conv <= 0 || old_pic.conv > 6 )
- {
- old_pic.conv = 3;
- old_pic.rank = 2;
- }
-
- ignored = mitkIpFReadLE( &(old_pic.n1), sizeof(mitkIpUInt4_t), old_pic.rank, infile );
- if( old_pic.rank == 3 && old_pic.n3 == 1 )
- old_pic.rank = 2;
-
- ignored = mitkIpFReadLE( &(old_pic.type), sizeof(mitkIpUInt4_t), 3, infile );
- if( old_pic.ntxt )
- {
- /*text = (unsigned char *)malloc( old_pic.ltxt );
- ignored = mitkIpFReadLE( text, 1, old_pic.ltxt, infile );*/
- fseek( infile, old_pic.ltxt, SEEK_CUR );
- }
-
-
- elements = old_pic.n1 * old_pic.n2;
- if( old_pic.rank == 3 )
- elements *= old_pic.n3;
-
-#ifdef WIN
- if ((hbuff = GlobalAlloc( GMEM_MOVEABLE, elements * old_pic.type )) != 0)
- buff = GlobalLock( hbuff );
-#else
- buff = malloc( elements * old_pic.type );
-#endif
-
- ignored = mitkIpFReadLE( buff, old_pic.type, elements, infile );
-
- /* convert to the new pic3 format */
-
- if( pic == NULL )
- pic = mitkIpPicNew();
-
- mitkIpPicClear( pic );
-
- pic->data = (void *)buff;
- if( old_pic.type == 1 )
- pic->type = mitkIpPicUInt;
- else
- pic->type = (mitkIpPicType_t)old_pic.conv;
- pic->bpe = old_pic.type*8;
- pic->dim = old_pic.rank;
- pic->n[0] = old_pic.n1;
- pic->n[1] = old_pic.n2;
- pic->n[2] = old_pic.n3;
- pic->n[3] = old_pic.n4;
- pic->n[4] = old_pic.n5;
- pic->n[5] = old_pic.n6;
- pic->n[6] = old_pic.n7;
- pic->n[7] = old_pic.n8;
-
-#ifdef WIN
- GlobalUnlock( hbuff );
- pic->hdata = hbuff;
-#endif
-
- return( pic );
-}
diff --git a/Utilities/IpPic/ipPicOldGetH.c b/Utilities/IpPic/ipPicOldGetH.c
deleted file mode 100755
index 07bd7b9cbf..0000000000
--- a/Utilities/IpPic/ipPicOldGetH.c
+++ /dev/null
@@ -1,142 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * reads the header of a oldstyle PicFile from disk
- *
- * $Log$
- * Revision 1.7 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.5 2000/05/04 12:52:39 ivo
- * inserted BSD style license
- *
- * Revision 1.4 2000/05/04 12:36:00 ivo
- * some doxygen comments.
- *
- * Revision 1.3 2000/01/13 14:03:07 andre
- * *** empty log message ***
- *
- * Revision 1.2 1997/09/15 13:21:17 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:59 andre
- * initial import
- *
- * Revision 0.2 1993/04/26 17:40:09 andre
- * 8 bit images from old pic format are now unsigned
- *
- * Revision 0.1 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)_mitkIpPicOldGetHeader\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-#ifdef DOS
-#include "mitkIpPicOP.h"
-#else
-#include "mitkIpPicOldP.h"
-#endif
-
-mitkIpPicDescriptor * _mitkIpPicOldGetHeader( FILE *infile, mitkIpPicDescriptor *pic )
-{
- _mitkIpPicOldHeader old_pic;
-
- /*unsigned char *text;*/
-
- /* read infile */
- size_t ignored = mitkIpFReadLE( &(old_pic.dummy1), sizeof(mitkIpUInt4_t), 4, infile );
- if( old_pic.conv <= 0 || old_pic.conv > 6 )
- {
- old_pic.conv = 3;
- old_pic.rank = 2;
- }
-
- ignored = mitkIpFReadLE( &(old_pic.n1), sizeof(mitkIpUInt4_t),old_pic.rank, infile );
- if( old_pic.rank == 3 && old_pic.n3 == 1 )
- old_pic.rank = 2;
-
- ignored = mitkIpFReadLE( &(old_pic.type), sizeof(mitkIpUInt4_t), 3, infile );
- if( old_pic.ntxt )
- {
- /*text = (unsigned char *)malloc( old_pic.ltxt );
- ignored = mitkIpFReadLE( text, 1, old_pic.ltxt, infile );*/
- fseek( infile, old_pic.ltxt, SEEK_CUR );
- }
-
- /* convert to the new pic3 format */
-
- if( pic == NULL )
- pic = mitkIpPicNew();
-
- mitkIpPicClear( pic );
-
- pic->data = NULL;
- if( old_pic.type == 1 )
- pic->type = mitkIpPicUInt;
- else
- pic->type = (mitkIpPicType_t)old_pic.conv;
- pic->bpe = old_pic.type*8;
- pic->dim = old_pic.rank;
- pic->n[0] = old_pic.n1;
- pic->n[1] = old_pic.n2;
- pic->n[2] = old_pic.n3;
- pic->n[3] = old_pic.n4;
- pic->n[4] = old_pic.n5;
- pic->n[5] = old_pic.n6;
- pic->n[6] = old_pic.n7;
- pic->n[7] = old_pic.n8;
-
- return( pic );
-}
diff --git a/Utilities/IpPic/ipPicOldGetS.c b/Utilities/IpPic/ipPicOldGetS.c
deleted file mode 100755
index ec43f428b4..0000000000
--- a/Utilities/IpPic/ipPicOldGetS.c
+++ /dev/null
@@ -1,157 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * reads a slice from an oldstyle PicFile
- *
- * $Log$
- * Revision 1.7 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.5 2000/05/04 12:52:39 ivo
- * inserted BSD style license
- *
- * Revision 1.4 2000/05/04 12:36:00 ivo
- * some doxygen comments.
- *
- * Revision 1.3 2000/01/13 14:03:07 andre
- * *** empty log message ***
- *
- * Revision 1.2 1997/09/15 13:21:18 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:59 andre
- * initial import
- *
- * Revision 0.2 1993/04/26 17:40:09 andre
- * 8 bit images from old pic format are now unsigned
- *
- * Revision 0.1 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.0 1993/03/31 11:42:13 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)_mitkIpPicOldGetSlice\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-#ifdef DOS
-#include "mitkIpPicOP.h"
-#else
-#include "mitkIpPicOldP.h"
-#endif
-
-mitkIpPicDescriptor * _mitkIpPicOldGetSlice( FILE *infile, mitkIpPicDescriptor *pic, mitkIpUInt4_t slice )
-{
- _mitkIpPicOldHeader old_pic;
-
- /*unsigned char *text;*/
- void *buff;
-
- unsigned long int elements;
-
- /* read infile */
- size_t ignored = mitkIpFReadLE( &(old_pic.dummy1), sizeof(mitkIpUInt4_t), 4, infile );
- if( old_pic.conv <= 0 || old_pic.conv > 6 )
- {
- old_pic.conv = 3;
- old_pic.rank = 2;
- }
-
- ignored = mitkIpFReadLE( &(old_pic.n1), sizeof(mitkIpUInt4_t), old_pic.rank, infile );
- if( old_pic.rank == 3 && old_pic.n3 == 1 )
- old_pic.rank = 2;
-
- ignored = mitkIpFReadLE( &(old_pic.type), sizeof(mitkIpUInt4_t), 3, infile );
- if( old_pic.ntxt )
- {
- /*text = (unsigned char *)malloc( old_pic.ltxt );
- ignored = mitkIpFReadLE( text, 1, old_pic.ltxt, infile );*/
- fseek( infile, old_pic.ltxt, SEEK_CUR );
- }
-
- old_pic.rank = 2;
-
- elements = old_pic.n1 * old_pic.n2;
- if( old_pic.rank == 3 )
- elements *= old_pic.n3;
-
- fseek( infile, elements * (slice - 1) * old_pic.type, SEEK_CUR );
-
- buff = malloc( elements * old_pic.type );
-
- ignored = mitkIpFReadLE( buff, old_pic.type, elements, infile );
-
- /* convert to the new pic3 format */
-
- if( pic == NULL )
- pic = mitkIpPicNew();
-
- mitkIpPicClear( pic );
-
- pic->data = (void *)buff;
- if( old_pic.type == 1 )
- pic->type = mitkIpPicUInt;
- else
- pic->type = (mitkIpPicType_t)old_pic.conv;
- pic->bpe = old_pic.type*8;
- pic->dim = old_pic.rank;
- pic->n[0] = old_pic.n1;
- pic->n[1] = old_pic.n2;
- pic->n[2] = old_pic.n3;
- pic->n[3] = old_pic.n4;
- pic->n[4] = old_pic.n5;
- pic->n[5] = old_pic.n6;
- pic->n[6] = old_pic.n7;
- pic->n[7] = old_pic.n8;
-
- return( pic );
-}
diff --git a/Utilities/IpPic/ipPicPut.c b/Utilities/IpPic/ipPicPut.c
deleted file mode 100755
index 8708c8aecf..0000000000
--- a/Utilities/IpPic/ipPicPut.c
+++ /dev/null
@@ -1,321 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * writes a PicFile to disk
- *
- * $Log$
- * Revision 1.17 2005/09/09 09:14:45 ivo
- * FIX: warnings on windows
- *
- * Revision 1.16 2005/06/21 11:22:48 ivo
- * CHG: encrypted only a warning instead of an error on write
- *
- * Revision 1.15 2003/02/18 12:28:23 andre
- * write compressed pic files
- *
- * Revision 1.14 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.12 2002/02/27 09:06:28 andre
- * zlib changes
- *
- * Revision 1.11 2000/05/04 12:52:40 ivo
- * inserted BSD style license
- *
- * Revision 1.10 2000/05/04 12:36:01 ivo
- * some doxygen comments.
- *
- * Revision 1.9 1999/11/27 19:40:44 andre
- * *** empty log message ***
- *
- * Revision 1.8 1999/11/27 19:24:19 andre
- * *** empty log message ***
- *
- * Revision 1.3.2.3 1998/03/25 15:03:36 andre
- * added info->pixel_start_in_file
- *
- * Revision 1.3.2.2 1997/10/09 11:03:53 andre
- * *** empty log message ***
- *
- * Revision 1.3.2.1 1997/09/15 13:46:15 andre
- * added encryption
- *
- * Revision 1.3 1997/09/15 13:21:18 andre
- * switched to new what string format
- *
- * Revision 1.2 1997/09/15 10:24:13 andre
- * mitkIpPicPut now returns status
- *
- * Revision 0.1 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision, NO error checking
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicPut\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-extern size_t
-_mitkIpPicFWrite( const void *ptr, size_t size, size_t nitems, mitkIpPicFile_t stream);
-
-int
-mitkIpPicPut( const char *outfile_name, mitkIpPicDescriptor *pic )
-{
- FILE *outfile;
-
- mitkIpUInt4_t len;
- mitkIpUInt4_t tags_len;
-
- if( pic->info->write_protect )
- {
- fprintf( stderr, "mitkIpPicPut: sorry, can't write (missing tags !!!)\n" );
- return( -1 );
- }
-
- if( mitkIpPicEncryptionType(pic) != ' ' )
- {
- fprintf( stderr, "mitkIpPicPut: warning: was encrypted !!!\n" );
- }
-
- if( outfile_name == NULL )
- outfile = stdout;
- else if( strcmp(outfile_name, "stdout") == 0 )
- outfile = stdout;
- else
- {
- mitkIpPicRemoveFile( outfile_name );
-
- if( mitkIpPicGetWriteCompression() )
- {
- char buff[1024];
-
- sprintf( buff, "%s.gz", outfile_name );
- outfile = mitkIpPicFOpen( buff, "wb" );
- }
- else
- outfile = fopen( outfile_name, "wb" );
- }
-
-
- if( outfile == NULL )
- {
- fprintf( stderr, "mitkIpPicPut: sorry, error opening outfile\n" );
- return( -1 );
- }
-
- tags_len = _mitkIpPicTagsSize( pic->info->tags_head );
-
- len = tags_len + 3 * sizeof(mitkIpUInt4_t)
- + pic->dim * sizeof(mitkIpUInt4_t);
-
- /* write oufile */
- if( mitkIpPicEncryptionType(pic) == ' ' )
- mitkIpPicFWrite( mitkIpPicVERSION, 1, sizeof(mitkIpPicTag_t), outfile );
- else
- mitkIpPicFWrite( pic->info->version, 1, sizeof(mitkIpPicTag_t), outfile );
-
- mitkIpPicFWriteLE( &len, sizeof(mitkIpUInt4_t), 1, outfile );
-
- mitkIpPicFWriteLE( &(pic->type), sizeof(mitkIpUInt4_t), 1, outfile );
- mitkIpPicFWriteLE( &(pic->bpe), sizeof(mitkIpUInt4_t), 1, outfile );
- mitkIpPicFWriteLE( &(pic->dim), sizeof(mitkIpUInt4_t), 1, outfile );
-
- mitkIpPicFWriteLE( pic->n, sizeof(mitkIpUInt4_t), pic->dim, outfile );
-
- _mitkIpPicWriteTags( pic->info->tags_head, outfile, mitkIpPicEncryptionType(pic) );
-
- if( mitkIpPicGetWriteCompression() )
- pic->info->pixel_start_in_file = mitkIpPicFTell( outfile );
- else
- pic->info->pixel_start_in_file = ftell( outfile );
-
- if( pic->data )
- {
- if( pic->type == mitkIpPicNonUniform )
- mitkIpPicFWrite( pic->data, pic->bpe / 8, _mitkIpPicElements(pic), outfile );
- else
- mitkIpPicFWriteLE( pic->data, pic->bpe / 8, _mitkIpPicElements(pic), outfile );
- }
-
- if( outfile != stdout )
- {
- if( mitkIpPicGetWriteCompression() )
- mitkIpPicFClose( outfile );
- else
- fclose( outfile );
- }
-
- return( 0 );
-}
-
-mitkIpUInt4_t _mitkIpPicTagsSize( _mitkIpPicTagsElement_t *head )
-{
- _mitkIpPicTagsElement_t *current = head;
- mitkIpUInt4_t tags_len;
-
- tags_len = 0;
- while( current != NULL )
- {
- mitkIpUInt4_t len;
-
- if( current->tsv->type == mitkIpPicTSV )
- {
- if( current->tsv->dim == 0 )
- {
- current->tsv->n[0] = _mitkIpPicTagsNumber(current->tsv->value);
-
- if( current->tsv->n[0] > 0 )
- current->tsv->dim = 1;
- }
-
- len = _mitkIpPicTagsSize( (_mitkIpPicTagsElement_t *)current->tsv->value );
- }
- else
- {
- mitkIpUInt4_t elements;
-
- elements = _mitkIpPicTSVElements( current->tsv );
-
- if( current->tsv->type == mitkIpPicASCII
- || current->tsv->type == mitkIpPicNonUniform )
- current->tsv->bpe = 8;
-
- len = elements * current->tsv->bpe / 8;
- }
-
- tags_len += 32 /* name */
- + sizeof( mitkIpUInt4_t) /* len */
- + 3 * sizeof( mitkIpUInt4_t) /* type, bpe, dim */
- + current->tsv->dim * sizeof( mitkIpUInt4_t) /* n[] */
- + len; /* data */
-
- current = current->next;
- }
- return( tags_len );
-}
-
-mitkIpUInt4_t _mitkIpPicTagsNumber( _mitkIpPicTagsElement_t *head )
-{
- _mitkIpPicTagsElement_t *current = head;
- mitkIpUInt4_t tags_number;
-
- tags_number = 0;
- while( current != NULL )
- {
- tags_number++;
-
- current = current->next;
- }
- return( tags_number );
-}
-
-void _mitkIpPicWriteTags( _mitkIpPicTagsElement_t *head, FILE *stream, char encryption_type )
-{
- _mitkIpPicTagsElement_t *current = head;
-
- while( current != NULL )
- {
- mitkIpUInt4_t elements;
- mitkIpUInt4_t len;
-
- elements = _mitkIpPicTSVElements( current->tsv );
-
- if( current->tsv->type == mitkIpPicTSV )
- {
- if( current->tsv->dim == 0 )
- {
- current->tsv->n[0] = _mitkIpPicTagsNumber(current->tsv->value);
-
- if( current->tsv->n[0] > 0 )
- current->tsv->dim = 1;
- }
-
- assert( elements == _mitkIpPicTagsNumber(current->tsv->value) );
-
- len = _mitkIpPicTagsSize( current->tsv->value );
- }
- else
- {
- if( current->tsv->type == mitkIpPicASCII
- || current->tsv->type == mitkIpPicNonUniform )
- current->tsv->bpe = 8;
-
- len = elements * current->tsv->bpe / 8;
-
- }
-
- len += 3 * sizeof(mitkIpUInt4_t) /* type, bpe, dim */
- + current->tsv->dim * sizeof(mitkIpUInt4_t); /* n[] */
-
- mitkIpPicFWrite( current->tsv->tag, 1, sizeof(mitkIpPicTag_t), stream );
-
- mitkIpPicFWriteLE( &len, sizeof(mitkIpUInt4_t), 1, stream );
-
- mitkIpPicFWriteLE( &(current->tsv->type), sizeof(mitkIpUInt4_t), 1, stream );
- mitkIpPicFWriteLE( &(current->tsv->bpe), sizeof(mitkIpUInt4_t), 1, stream );
- mitkIpPicFWriteLE( &(current->tsv->dim), sizeof(mitkIpUInt4_t), 1, stream );
- mitkIpPicFWriteLE( &(current->tsv->n), sizeof(mitkIpUInt4_t), current->tsv->dim, stream );
-
- if( current->tsv->type == mitkIpPicTSV )
- {
- _mitkIpPicWriteTags( current->tsv->value,
- stream,
- encryption_type );
- }
- else
- {
- mitkIpPicFWriteLE( current->tsv->value, current->tsv->bpe / 8, elements, stream );
- }
-
- current = current->next;
- }
-}
diff --git a/Utilities/IpPic/ipPicPutH.c b/Utilities/IpPic/ipPicPutH.c
deleted file mode 100755
index c21b306a07..0000000000
--- a/Utilities/IpPic/ipPicPutH.c
+++ /dev/null
@@ -1,89 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/** @file
- * writes a PicFile Header to disk
- */
-
-#ifndef lint
- static char *what = { "@(#)mitkIpPicPutHeader\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-void mitkIpPicPutHeader( char *outfile_name, mitkIpPicDescriptor *pic )
-{
- FILE *outfile;
-
- mitkIpUInt4_t len;
-
- if( outfile_name == NULL )
- outfile = stdout;
- else if( strcmp(outfile_name, "stdout") == 0 )
- outfile = stdout;
- else
- outfile = fopen( outfile_name, "wb" );
-
- if( outfile == NULL )
- {
- /*ipPrintErr( "mitkIpPicPut: sorry, error opening outfile\n" );*/
- return;
- }
-
- len = 3 * sizeof(mitkIpUInt4_t)
- + pic->dim * sizeof(mitkIpUInt4_t);
-
- /* write oufile */
- fwrite( mitkIpPicVERSION, 1, sizeof(mitkIpPicTag_t), outfile );
-
- mitkIpFWriteLE( &len, sizeof(mitkIpUInt4_t), 1, outfile );
-
- mitkIpFWriteLE( &(pic->type), sizeof(mitkIpUInt4_t), 1, outfile );
- mitkIpFWriteLE( &(pic->bpe), sizeof(mitkIpUInt4_t), 1, outfile );
- mitkIpFWriteLE( &(pic->dim), sizeof(mitkIpUInt4_t), 1, outfile );
-
- mitkIpFWriteLE( pic->n, sizeof(mitkIpUInt4_t), pic->dim, outfile );
-
- if( outfile != stdout )
- fclose( outfile );
-
- /*return();*/
-}
diff --git a/Utilities/IpPic/ipPicPutMem.c b/Utilities/IpPic/ipPicPutMem.c
deleted file mode 100755
index 564c5523fe..0000000000
--- a/Utilities/IpPic/ipPicPutMem.c
+++ /dev/null
@@ -1,179 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/** @file
- * writes a PicStructure to memory block
- */
-
-#ifndef lint
- static char *what = { "@(#)mitkIpPicPutMem\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
- /** FUNCTION DECLARATION
- *
- *
- * PARAMETERS
- *
- *
- * AUTHOR & DATE
- * Harald Evers 15.7.98
- *
- * UPDATES
- *
- *--------------------------------------------------------------------
- *
- */
-
-
-
-void _mitkIpPicWriteTagsMem( _mitkIpPicTagsElement_t *head, mitkIpUInt1_t **mem_ptr )
-{
- _mitkIpPicTagsElement_t *current = head;
-
- while( current != NULL )
- {
- mitkIpUInt4_t elements;
- mitkIpUInt4_t len;
-
- elements = _mitkIpPicTSVElements( current->tsv );
-
- if( current->tsv->type == mitkIpPicTSV )
- {
- if( current->tsv->dim == 0 )
- {
- current->tsv->n[0] = _mitkIpPicTagsNumber(current->tsv->value);
-
- if( current->tsv->n[0] > 0 )
- current->tsv->dim = 1;
- }
-
- assert( elements == _mitkIpPicTagsNumber(current->tsv->value) );
-
- len = _mitkIpPicTagsSize( current->tsv->value );
- }
- else
- {
- if( current->tsv->type == mitkIpPicASCII
- || current->tsv->type == mitkIpPicNonUniform )
- current->tsv->bpe = 8;
-
- len = elements * current->tsv->bpe / 8;
-
- }
-
- len += 3 * sizeof(mitkIpUInt4_t) /* type, bpe, dim */
- + current->tsv->dim * sizeof(mitkIpUInt4_t); /* n[] */
-
- memmove( *mem_ptr, current->tsv->tag, sizeof(mitkIpPicTag_t) );
- *mem_ptr += sizeof(mitkIpPicTag_t);
- memmove( *mem_ptr, &len, sizeof(mitkIpUInt4_t) );
- *mem_ptr += sizeof(mitkIpUInt4_t);
- memmove( *mem_ptr, &(current->tsv->type), sizeof(mitkIpUInt4_t) );
- *mem_ptr += sizeof(mitkIpUInt4_t);
- memmove( *mem_ptr, &(current->tsv->bpe), sizeof(mitkIpUInt4_t) );
- *mem_ptr += sizeof(mitkIpUInt4_t);
- memmove( *mem_ptr, &(current->tsv->dim), sizeof(mitkIpUInt4_t) );
- *mem_ptr += sizeof(mitkIpUInt4_t);
- memmove( *mem_ptr, &(current->tsv->n),
- current->tsv->dim*sizeof(mitkIpUInt4_t) );
- *mem_ptr += current->tsv->dim*sizeof(mitkIpUInt4_t);
-
- if( current->tsv->type == mitkIpPicTSV )
- {
- _mitkIpPicWriteTagsMem( current->tsv->value, mem_ptr );
- }
- else
- {
- /* if( encryption_type == 'e' ... */
-
- memmove( *mem_ptr,current->tsv->value, current->tsv->bpe/8*elements );
- *mem_ptr += current->tsv->bpe/8*elements;
- }
- current = current->next;
- }
-
-}
-
-mitkIpUInt1_t *
-mitkIpPicPutMem( mitkIpPicDescriptor *pic, int *mem_size )
-{
- mitkIpUInt4_t len;
- mitkIpUInt4_t tags_len;
- mitkIpUInt1_t *mem_pic = NULL;
- mitkIpUInt1_t *mem_ptr;
-
- tags_len = _mitkIpPicTagsSize( pic->info->tags_head );
-
- len = tags_len + 3 * sizeof(mitkIpUInt4_t)
- + pic->dim * sizeof(mitkIpUInt4_t);
-
- *mem_size =
- sizeof(mitkIpPicTag_t) + /* pic version */
- sizeof(mitkIpUInt4_t) + /* pic data offset */
- len + /* header + tags */
- _mitkIpPicSize( pic ); /* size of data */
-
- mem_pic = malloc( *mem_size );
- if( !mem_pic )
- return( NULL );
-
- mem_ptr = mem_pic;
- memmove( mem_ptr, mitkIpPicVERSION, sizeof(mitkIpPicTag_t) );
- mem_ptr += sizeof(mitkIpPicTag_t);
- memmove( mem_ptr, &len, sizeof(mitkIpUInt4_t) );
- mem_ptr += sizeof(mitkIpUInt4_t);
- memmove( mem_ptr, &(pic->type), sizeof(mitkIpUInt4_t) );
- mem_ptr += sizeof(mitkIpUInt4_t);
- memmove( mem_ptr, &(pic->bpe), sizeof(mitkIpUInt4_t) );
- mem_ptr += sizeof(mitkIpUInt4_t);
- memmove( mem_ptr, &(pic->dim), sizeof(mitkIpUInt4_t) );
- mem_ptr += sizeof(mitkIpUInt4_t);
- memmove( mem_ptr, &(pic->n), pic->dim*sizeof(mitkIpUInt4_t) );
- mem_ptr += pic->dim*sizeof(mitkIpUInt4_t);
-
- _mitkIpPicWriteTagsMem( pic->info->tags_head, &mem_ptr );
-
- memmove( mem_ptr, pic->data, pic->bpe/8*_mitkIpPicElements(pic) );
-
- return( mem_pic );
-}
diff --git a/Utilities/IpPic/ipPicPutS.c b/Utilities/IpPic/ipPicPutS.c
deleted file mode 100755
index cf492679db..0000000000
--- a/Utilities/IpPic/ipPicPutS.c
+++ /dev/null
@@ -1,185 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * writes a PicFile to disk
- *
- * $Log$
- * Revision 1.12 2005/09/09 09:14:45 ivo
- * FIX: warnings on windows
- *
- * Revision 1.11 2003/02/18 12:28:23 andre
- * write compressed pic files
- *
- * Revision 1.10 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.8 2000/05/04 12:52:40 ivo
- * inserted BSD style license
- *
- * Revision 1.7 2000/05/04 12:36:01 ivo
- * some doxygen comments.
- *
- * Revision 1.6 2000/01/17 18:32:00 andre
- * *** empty log message ***
- *
- * Revision 1.5 1999/11/27 19:15:08 andre
- * *** empty log message ***
- *
- * Revision 1.4 1998/09/01 15:26:43 andre
- * *** empty log message ***
- *
- * Revision 1.3 1998/05/18 12:13:54 andre
- * *** empty log message ***
- *
- * Revision 1.2 1997/09/15 13:21:19 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:59 andre
- * initial import
- *
- * Revision 0.0 1993/04/02 16:18:39 andre
- * Initial revision
- *
- *
- *--------------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)mitkIpPicPutSlice\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-#include <stdio.h>
-#include <stddef.h>
-
-
-void mitkIpPicPutSlice( const char *outfile_name, mitkIpPicDescriptor *pic, mitkIpUInt4_t slice )
-{
- mitkIpPicDescriptor *pic_in;
-
- FILE *outfile;
-
- size_t ignored;
-
- pic_in = mitkIpPicGetHeader( outfile_name,
- NULL );
-
- if( pic_in == NULL )
- {
- if( slice == 1 )
- {
- mitkIpBool_t compression;
-
- pic->n[pic->dim] = 1;
- pic->dim += 1;
-
- compression = mitkIpPicSetWriteCompression( mitkIpFalse );
- mitkIpPicPut( outfile_name, pic );
- mitkIpPicSetWriteCompression( compression );
-
- pic->dim -= 1;
- pic->n[pic->dim] = 0;
-
- return;
- }
- else
- return;
- }
-
- pic_in = mitkIpPicGetTags( outfile_name,
- pic_in );
-
- outfile = fopen( outfile_name, "r+b" );
-
- if( outfile == NULL )
- {
- /*ipPrintErr( "mitkIpPicPut: sorry, error opening outfile\n" );*/
- /*return();*/
- }
-
- if( pic->dim != pic_in->dim - 1 )
- {
- fclose( outfile );
- return;
- }
- else if( pic->n[0] != pic_in->n[0] )
- {
- fclose( outfile );
- return;
- }
- else if( pic->n[1] != pic_in->n[1] )
- {
- fclose( outfile );
- return;
- }
-
- if( slice > pic_in->n[pic_in->dim-1] )
- pic_in->n[pic_in->dim-1] += 1;
-
- /* write outfile */
- /*fseek( outfile, 0, SEEK_SET );*/
- rewind( outfile );
- ignored = fwrite( mitkIpPicVERSION, 1, sizeof(mitkIpPicTag_t), outfile );
-
- fseek( outfile, sizeof(mitkIpUInt4_t), SEEK_CUR ); /* skip tags_len */
-
- ignored = mitkIpFWriteLE( &(pic_in->type), sizeof(mitkIpUInt4_t), 1, outfile );
- ignored = mitkIpFWriteLE( &(pic_in->bpe), sizeof(mitkIpUInt4_t), 1, outfile );
- ignored = mitkIpFWriteLE( &(pic_in->dim), sizeof(mitkIpUInt4_t), 1, outfile );
-
- ignored = mitkIpFWriteLE( pic_in->n, sizeof(mitkIpUInt4_t), pic_in->dim, outfile );
-
- fseek( outfile, pic_in->info->pixel_start_in_file + _mitkIpPicSize(pic) * (slice - 1), SEEK_SET );
-
- ignored = mitkIpFWriteLE( pic->data, pic->bpe / 8, _mitkIpPicElements(pic), outfile );
-
- /*fseek( outfile, 0, SEEK_END );*/
-
- fclose( outfile );
-
- mitkIpPicFree(pic_in);
-
- /*return();*/
-}
diff --git a/Utilities/IpPic/ipPicQueryT.c b/Utilities/IpPic/ipPicQueryT.c
deleted file mode 100755
index 802edd941e..0000000000
--- a/Utilities/IpPic/ipPicQueryT.c
+++ /dev/null
@@ -1,113 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * searches for a tag
- */
-
-#ifndef lint
- static char *what = { "@(#)mitkIpPicQueryTag\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-/** searches for a tag
- *
- * @param pic the pic
- * @param tag the tag to search for
- * @param head the head of the tags list
- *
- * AUTHOR & DATE
- * Andre Schroeter 27.08.94
- *
- * UPDATES
- * none
- */
-
-mitkIpPicTSV_t *
-mitkIpPicQueryTag( mitkIpPicDescriptor *pic, const char *tag )
-{
- _mitkIpPicTagsElement_t *found;
-
- found = _mitkIpPicFindTag( pic->info->tags_head, tag );
-
- if( found == NULL )
- return( NULL );
- else
- return( found->tsv );
-}
-mitkIpPicTSV_t *
-mitkIpPicQuerySubTag( mitkIpPicTSV_t *parent, const char *tag )
-{
- _mitkIpPicTagsElement_t *found;
-
- found = _mitkIpPicFindTag( parent->value, tag );
-
- if( found == NULL )
- return( NULL );
- else
- return( found->tsv );
-}
-
-_mitkIpPicTagsElement_t *
-_mitkIpPicFindTag( _mitkIpPicTagsElement_t *head, const char *tag )
-{
- int i;
- char name[_mitkIpPicTAGLEN+1];
- _mitkIpPicTagsElement_t *current;
-
- if( !tag )
- return( NULL );
-
- sprintf( name, "%.*s", _mitkIpPicTAGLEN, tag );
- for( i=strlen(name); i<_mitkIpPicTAGLEN; i++ )
- name[i] = ' ';
-
- current = head;
- while( current != NULL )
- {
- if( strncmp( current->tsv->tag, name, _mitkIpPicTAGLEN) == 0 )
- return( current );
-
- current = current->next;
- }
-
- return( NULL );
-}
diff --git a/Utilities/IpPic/ipPicSize.c b/Utilities/IpPic/ipPicSize.c
deleted file mode 100755
index 1e7644effa..0000000000
--- a/Utilities/IpPic/ipPicSize.c
+++ /dev/null
@@ -1,97 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * calculates the size of the image data
- */
-
-#ifndef lint
- static char *what = { "@(#)_mitkIpPicSize\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-/** calculates the size of the image data
- * @param pic pointer to image
- * @return size of image data
- *
- * $Log$
- * Revision 1.7 2004/07/02 11:40:49 max
- * Fixed bug resulting in mitkIpUInt4_t range overflow using float volumes of a size larger than 512x512x512.
- *
- * Revision 1.6 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.4 2000/05/04 12:52:41 ivo
- * inserted BSD style license
- *
- * Revision 1.3 2000/05/04 12:36:01 ivo
- * some doxygen comments.
- *
- * Revision 1.2 1997/09/15 13:21:20 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:09:59 andre
- * initial import
- *
- * Revision 0.0 1993/04/26 15:28:03 andre
- * Initial revision, NO error checking
- */
-
-mitkIpUInt4_t _mitkIpPicSize(
-#if defined(__cplusplus) || defined(c_plusplus)
- const
-#endif
- mitkIpPicDescriptor *pic )
-{
- mitkIpUInt4_t i;
- mitkIpUInt4_t elements;
- mitkIpUInt4_t bytesPerElement;
- if( pic->dim == 0 )
- return( 0 );
-
- elements = pic->n[0];
- for( i = 1; i < pic->dim; i++ )
- elements *= pic->n[i];
-
- bytesPerElement = pic->bpe / 8;
-
- return( elements * bytesPerElement );
-}
diff --git a/Utilities/IpPic/ipPicTSVElements.c b/Utilities/IpPic/ipPicTSVElements.c
deleted file mode 100755
index c29b670ce9..0000000000
--- a/Utilities/IpPic/ipPicTSVElements.c
+++ /dev/null
@@ -1,79 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * calculates the number of elements in the TSV's value
- */
-
-#ifndef lint
- static char *what = { "@(#)_mitkIpPicTSVElements\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
- /** calculates the number of elements in the TSV's value
- * @param tsv the tsv
- *
- * @return the number of elements in the tsv
- *
- *
- * AUTHOR & DATE
- * Andre Schroeter 23.01.95
- *
- * UPDATES
- * none
- */
-
-
-
-mitkIpUInt4_t _mitkIpPicTSVElements( mitkIpPicTSV_t *tsv )
-{
- mitkIpUInt4_t i;
- mitkIpUInt4_t elements;
-
- if( tsv->dim == 0 )
- return( 0 );
-
- elements = tsv->n[0];
- for( i = 1; i < tsv->dim; i++ )
- elements *= tsv->n[i];
-
- return( elements );
-}
diff --git a/Utilities/IpPic/ipPicTSVSize.c b/Utilities/IpPic/ipPicTSVSize.c
deleted file mode 100755
index 30328fa5f4..0000000000
--- a/Utilities/IpPic/ipPicTSVSize.c
+++ /dev/null
@@ -1,78 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * calculates the size of the TSV's value in bytes
- */
-
-#ifndef lint
- static char *what = { "@(#)_mitkIpPicTSVSize\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
- /** calculates the size of the TSV's value in bytes
- * @param tsv the tsv
- *
- * @return the size of the tsv in bytes
- *
- *
- * AUTHOR & DATE
- * Andre Schroeter 23.01.95
- *
- * UPDATES
- * none
- */
-
-
-mitkIpUInt4_t _mitkIpPicTSVSize( mitkIpPicTSV_t *tsv )
-{
- mitkIpUInt4_t i;
- mitkIpUInt4_t elements;
-
- if( tsv->dim == 0 )
- return( 0 );
-
- elements = tsv->n[0];
- for( i = 1; i < tsv->dim; i++ )
- elements *= tsv->n[i];
-
- return( elements * tsv->bpe / 8 );
-}
diff --git a/Utilities/IpPic/ipPicType.c b/Utilities/IpPic/ipPicType.c
deleted file mode 100755
index 3964719ca5..0000000000
--- a/Utilities/IpPic/ipPicType.c
+++ /dev/null
@@ -1,86 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- * initialisation of an array that maps the
- * mitkIpPicType_t types to printable strings
- */
-
-#ifndef lint
- static char *what = { "@(#)mitkIpPicType\t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-#include "mitkIpPic.h"
-
-/** initialisation of an array that maps the
- * mitkIpPicType_t types to printable strings
- *
- * @param type the type
- *
- * @return the printable string
- *
- * AUTHOR & DATE
- * Andre Schroeter 08.05.94
- *
- * UPDATES
- * none
- *
- */
-
-static const char *_mitkIpPicTypeName[_mitkIpPicTypeMax] =
-{
- "mitkIpPicUnknown",
- "mitkIpPicBool",
- "mitkIpPicASCII",
- "mitkIpPicInt",
- "mitkIpPicUInt",
- "mitkIpPicFloat",
- "mitkIpPicUnknown",
- "mitkIpPicNonUniform",
- "mitkIpPicTSV"
-};
-
-const char *mitkIpPicTypeName( mitkIpUInt4_t type )
-{
- if( type > _mitkIpPicTypeMax )
- return( _mitkIpPicTypeName[0] );
- else
- return( _mitkIpPicTypeName[type] );
-}
diff --git a/Utilities/IpPic/ipWin.c b/Utilities/IpPic/ipWin.c
deleted file mode 100755
index 5add62deb6..0000000000
--- a/Utilities/IpPic/ipWin.c
+++ /dev/null
@@ -1,64 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-#ifdef WIN
-#include <windows.h>
-#include <stdio.h>
-
-DWORD hfread(LPSTR ptr, DWORD size, DWORD n, FILE *stream)
-{
- if( (size < 0xffff) && (n < 0xffff) )
- return fread( ptr, (WORD)size, (WORD)n, stream );
- else
- {
- DWORD Bytes;
- BYTE huge *lpwork;
-
- Bytes = size*n;
-
- for( lpwork = ptr; Bytes > 0xffff; Bytes-=0xffff, lpwork+=0xffff )
- fread( (char far*)lpwork, 0xffff, 1, stream );
-
- return fread( (char far*)lpwork, (WORD)Bytes, 1, stream );
- }
-}
-#endif
-
diff --git a/Utilities/IpPic/mitkIpPic.h b/Utilities/IpPic/mitkIpPic.h
deleted file mode 100644
index 38b790247b..0000000000
--- a/Utilities/IpPic/mitkIpPic.h
+++ /dev/null
@@ -1,892 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
- */
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * public defines for the pic-format
- *
- * $Log$
- * Revision 1.3 2007/03/22 13:41:29 nolden
- * FIX: resolve problems with chili plugin
- *
- * Revision 1.2 2007/03/07 17:23:18 nolden
- * fixes for chili plugin build
- *
- * Revision 1.1 2006/12/13 11:54:43 nolden
- * *** empty log message ***
- *
- * Revision 1.47 2006/11/20 16:09:18 nolden
- * FIX/CHG: different mangling of zlib names for ITK 3.x
- *
- * Revision 1.46 2006/09/20 11:38:17 nolden
- * CHG: use itk zlib header from itkzlib subdir of ipPic if USE_ITKZLIB is defined
- *
- * Revision 1.45 2006/04/20 12:56:00 nolden
- * FIX/CHG/ENH: added PPC-Mac definitions
- *
- * Revision 1.44 2005/10/11 19:06:41 ivo
- * FIX: typo
- *
- * Revision 1.43 2005/10/11 18:35:34 ivo
- * FIX: typo
- *
- * Revision 1.42 2005/10/11 18:19:46 ivo
- * ENH: trying to fix zlib problems: use renamed itk zlib methods (itk_gzread etc)
- *
- * Revision 1.41 2005/04/29 15:41:46 ivo
- * FIX: qchili compatibility for version of 21/4/05
- *
- * Revision 1.40 2004/04/06 14:59:39 nolden
- * moved win32 compatibility settings from mitkIpPic.h to ipPic.pro
- *
- * Revision 1.39 2004/03/25 18:35:05 andre
- * bug fix
- *
- * Revision 1.38 2003/12/02 11:54:31 tobiask
- * Added setters and getters for rgb pixels.
- *
- * Revision 1.37 2003/11/28 14:24:45 tobiask
- * Fixed bugs in macros mitkIpPicGET_PIXEL and mitkIpPicPUT_PIXEL.
- *
- * Revision 1.36 2003/09/30 20:12:50 tobiask
- * Added macros for getting and setting pixel values.
- *
- * Revision 1.35 2003/02/18 12:28:23 andre
- * write compressed pic files
- *
- * Revision 1.34 2002/11/13 17:52:59 ivo
- * new ipPic added.
- *
- * Revision 1.32 2002/10/31 10:00:30 ivo
- * zlib.lib including headers now in win32. gz-extension should work now on every windows.
- * WIN32 define changed to standard _WIN32.
- *
- * Revision 1.31 2002/05/16 13:14:30 peter
- * changed include path to ipPic/mitkIpPic.h
- *
- * Revision 1.30 2002/04/18 19:09:13 ivo
- * compression (zlib) activated.
- *
- * Revision 1.1.1.1 2002/04/18 18:38:43 ivo
- * no message
- *
- * Revision 1.29 2002/02/27 08:54:43 andre
- * zlib changes
- *
- * Revision 1.28 2000/06/26 16:02:05 andre
- * pPicFORALL_x bug fix
- *
- * Revision 1.27 2000/05/24 14:10:51 tobiask
- * Removed ipPic/ from the include directives.
- *
- * Revision 1.26 2000/05/04 12:52:35 ivo
- * inserted BSD style license
- *
- * Revision 1.25 2000/05/04 12:35:58 ivo
- * some doxygen comments.
- *
- * Revision 1.24 1999/12/09 19:17:46 andre
- * *** empty log message ***
- *
- * Revision 1.23 1999/12/09 19:11:51 andre
- * *** empty log message ***
- *
- * Revision 1.22 1999/11/29 09:41:39 andre
- * *** empty log message ***
- *
- * Revision 1.21 1999/11/29 09:34:34 andre
- * *** empty log message ***
- *
- * Revision 1.20 1999/11/28 16:29:43 andre
- * *** empty log message ***
- *
- * Revision 1.19 1999/11/28 16:27:21 andre
- * *** empty log message ***
- *
- * Revision 1.18 1999/11/27 23:59:45 andre
- * *** empty log message ***
- *
- * Revision 1.17 1999/11/27 19:15:08 andre
- * *** empty log message ***
- *
- * Revision 1.16 1999/11/27 12:47:52 andre
- * *** empty log message ***
- *
- * Revision 1.15 1999/08/20 08:25:42 andre
- * *** empty log message ***
- *
- * Revision 1.14 1998/09/16 18:35:16 andre
- * *** empty log message ***
- *
- * Revision 1.13 1998/09/16 18:32:53 andre
- * *** empty log message ***
- *
- * Revision 1.12 1998/07/16 12:33:18 andre
- * *** empty log message ***
- *
- * Revision 1.11 1998/07/14 11:16:16 andre
- * *** empty log message ***
- *
- * Revision 1.10 1998/06/23 15:56:40 andre
- * *** empty log message ***
- *
- * Revision 1.9 1998/06/18 09:12:14 andre
- * *** empty log message ***
- *
- * Revision 1.8 1998/06/09 12:38:30 andre
- * added mitkIpPicDelSubTag
- *
- * Revision 1.7 1998/06/09 11:34:32 andre
- * *** empty log message ***
- *
- * Revision 1.6 1998/06/09 10:58:25 andre
- * added mitkIpPicAddSubTag
- *
- * Revision 1.5 1998/05/09 18:30:23 andre
- * *** empty log message ***
- *
- * Revision 1.4 1998/05/06 14:13:15 andre
- * added info->pixel_start_in_file
- *
- * Revision 1.3 1997/10/20 13:35:40 andre
- * *** empty log message ***
- *
- * Revision 1.2 1997/09/15 10:24:12 andre
- * mitkIpPicPut now returns status
- *
- * Revision 0.2 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.1 1993/03/31 11:44:35 andre
- * added 'GetSlice'
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision
- *
- *
- *--------------------------------------------------------------------
- *
- */
-
-#define USE_ITKZLIB
-
-#ifndef _mitkIpPic_h
-#define _mitkIpPic_h
-
-
-#ifndef NO_DEBUG
-# define mitkIpPicDEBUG
-#endif
-
-
-#include <stdlib.h>
-#include <stdio.h>
-#include <string.h>
-
-#ifdef sun
-# include <unistd.h>
-#endif
-
-
-
-#ifdef WIN
-# include <windows.h>
-extern DWORD ipWinFread(LPSTR ptr, DWORD size, DWORD n, FILE *stream);
-#endif
-
-
-
-#include <assert.h> /**/
-
-#include <mitkIpTypes.h>
-
-
-#ifdef mitkIpPicDEBUG
-#endif
-
-
-/*
-** defines
-*/
-#define mitkIpPicVERSION "PIC VERSION 3.00 "
-#define mitkIpPicVERSIONe "PIC VERSION 3.00e "
-#define _mitkIpPicNDIM 8
-#define _mitkIpPicTAGLEN 32
-
-
-#if (THIS_IS_BIG_ENDIAN) || defined (_IBMR2) || (mc68000) || (sun) || (__convex__) || (__hppa) || (_MIPSEB) || defined ( __PPC__)
-# define _mitkIpENDIAN_IS_BIG
-#else
-# define _mitkIpENDIAN_IS_LITTLE
-#endif
-
-
-#define mitkIpPicVersionMajor(pic) (mitkIpUInt1_t)(pic->info->version[12] - '0')
-#define mitkIpPicVersionMinor(pic) (mitkIpUInt1_t)(10 * (pic->info->version[14]-'0' ) \
- + pic->info->version[15]-'0')
-#define mitkIpPicEncryptionType(pic) (pic->info->version[16])
-
-/*#define mitkIpPicIsPic(pic) (( (pic)->magic == mitkIpPicPicDescriptor_m) \
- ? mitkIpTrue : mitkIpFalse )*/
-
-
-#define mitkIpPicDR(type,len) (mitkIpUInt4_t)( ((type)<<16) + (len) )
-
-#define mitkIpPicFOR_TYPE( _ipPIC_TYPE, _ipPIC_CMD, _ipPIC_PIC) \
- _ipPIC_CMD(_ipPIC_TYPE,_ipPIC_PIC)
-
-#define mitkIpPicFORALL( _ipPIC_CMD, _ipPIC_PIC ) \
- switch( mitkIpPicDR((_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe) ) \
- { \
- case mitkIpPicDR( mitkIpPicInt, 8 ): \
- _ipPIC_CMD(mitkIpInt1_t, _ipPIC_PIC); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 8 ): \
- _ipPIC_CMD(mitkIpUInt1_t, _ipPIC_PIC); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 16 ): \
- _ipPIC_CMD(mitkIpInt2_t, _ipPIC_PIC); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 16 ): \
- _ipPIC_CMD(mitkIpUInt2_t, _ipPIC_PIC); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 32 ): \
- _ipPIC_CMD(mitkIpInt4_t, _ipPIC_PIC); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 32 ): \
- _ipPIC_CMD(mitkIpUInt4_t, _ipPIC_PIC); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 32 ): \
- _ipPIC_CMD(mitkIpFloat4_t, _ipPIC_PIC); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 64 ): \
- _ipPIC_CMD(mitkIpFloat8_t, _ipPIC_PIC); \
- break; \
- default: \
- fprintf( stderr, \
- "sorry, %s: datatype (%i/%i) not supported for %s.\n", \
- __FILE__, (_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe, #_ipPIC_CMD ); \
- break; \
- }
-
-#define mitkIpPicFORALL_1( _ipPIC_CMD, _ipPIC_PIC, A1 ) \
- switch( mitkIpPicDR((_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe) ) \
- { \
- case mitkIpPicDR( mitkIpPicInt, 8 ): \
- _ipPIC_CMD(mitkIpInt1_t, _ipPIC_PIC, A1); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 8 ): \
- _ipPIC_CMD(mitkIpUInt1_t, _ipPIC_PIC, A1); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 16 ): \
- _ipPIC_CMD(mitkIpInt2_t, _ipPIC_PIC, A1); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 16 ): \
- _ipPIC_CMD(mitkIpUInt2_t, _ipPIC_PIC, A1); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 32 ): \
- _ipPIC_CMD(mitkIpInt4_t, _ipPIC_PIC, A1); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 32 ): \
- _ipPIC_CMD(mitkIpUInt4_t, _ipPIC_PIC, A1); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 32 ): \
- _ipPIC_CMD(mitkIpFloat4_t, _ipPIC_PIC, A1); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 64 ): \
- _ipPIC_CMD(mitkIpFloat8_t, _ipPIC_PIC, A1); \
- break; \
- default: \
- fprintf( stderr, \
- "sorry, %s: datatype (%i/%i) not supported for %s.\n", \
- __FILE__, (_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe, #_ipPIC_CMD ); \
- break; \
- }
-
-#define mitkIpPicFORALL_2( _ipPIC_CMD, _ipPIC_PIC, A1, A2 ) \
- switch( mitkIpPicDR((_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe) ) \
- { \
- case mitkIpPicDR( mitkIpPicInt, 8 ): \
- _ipPIC_CMD(mitkIpInt1_t, _ipPIC_PIC, A1, A2); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 8 ): \
- _ipPIC_CMD(mitkIpUInt1_t, _ipPIC_PIC, A1, A2); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 16 ): \
- _ipPIC_CMD(mitkIpInt2_t, _ipPIC_PIC, A1, A2); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 16 ): \
- _ipPIC_CMD(mitkIpUInt2_t, _ipPIC_PIC, A1, A2); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 32 ): \
- _ipPIC_CMD(mitkIpInt4_t, _ipPIC_PIC, A1, A2); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 32 ): \
- _ipPIC_CMD(mitkIpUInt4_t, _ipPIC_PIC, A1, A2); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 32 ): \
- _ipPIC_CMD(mitkIpFloat4_t, _ipPIC_PIC, A1, A2); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 64 ): \
- _ipPIC_CMD(mitkIpFloat8_t, _ipPIC_PIC, A1, A2); \
- break; \
- default: \
- fprintf( stderr, \
- "sorry, %s: datatype (%i/%i) not supported for %s.\n", \
- __FILE__, (_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe, #_ipPIC_CMD ); \
- break; \
- }
-
-#define mitkIpPicFORALL_3( _ipPIC_CMD, _ipPIC_PIC, A1, A2, A3 ) \
- switch( mitkIpPicDR((_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe) ) \
- { \
- case mitkIpPicDR( mitkIpPicInt, 8 ): \
- _ipPIC_CMD(mitkIpInt1_t, _ipPIC_PIC, A1, A2, A3); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 8 ): \
- _ipPIC_CMD(mitkIpUInt1_t, _ipPIC_PIC, A1, A2, A3); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 16 ): \
- _ipPIC_CMD(mitkIpInt2_t, _ipPIC_PIC, A1, A2, A3); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 16 ): \
- _ipPIC_CMD(mitkIpUInt2_t, _ipPIC_PIC, A1, A2, A3); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 32 ): \
- _ipPIC_CMD(mitkIpInt4_t, _ipPIC_PIC, A1, A2, A3); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 32 ): \
- _ipPIC_CMD(mitkIpUInt4_t, _ipPIC_PIC, A1, A2, A3); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 32 ): \
- _ipPIC_CMD(mitkIpFloat4_t, _ipPIC_PIC, A1, A2, A3); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 64 ): \
- _ipPIC_CMD(mitkIpFloat8_t, _ipPIC_PIC, A1, A2, A3); \
- break; \
- default: \
- fprintf( stderr, \
- "sorry, %s: datatype (%i/%i) not supported for %s.\n", \
- __FILE__, (_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe, #_ipPIC_CMD ); \
- break; \
- }
-
-#define mitkIpPicFORALL_4( _ipPIC_CMD, _ipPIC_PIC, A1, A2, A3, A4 ) \
- switch( mitkIpPicDR((_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe) ) \
- { \
- case mitkIpPicDR( mitkIpPicInt, 8 ): \
- _ipPIC_CMD(mitkIpInt1_t, _ipPIC_PIC, A1, A2, A3, A4); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 8 ): \
- _ipPIC_CMD(mitkIpUInt1_t, _ipPIC_PIC, A1, A2, A3, A4); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 16 ): \
- _ipPIC_CMD(mitkIpInt2_t, _ipPIC_PIC, A1, A2, A3, A4); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 16 ): \
- _ipPIC_CMD(mitkIpUInt2_t, _ipPIC_PIC, A1, A2, A3, A4); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 32 ): \
- _ipPIC_CMD(mitkIpInt4_t, _ipPIC_PIC, A1, A2, A3, A4); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 32 ): \
- _ipPIC_CMD(mitkIpUInt4_t, _ipPIC_PIC, A1, A2, A3, A4); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 32 ): \
- _ipPIC_CMD(mitkIpFloat4_t, _ipPIC_PIC, A1, A2, A3, A4); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 64 ): \
- _ipPIC_CMD(mitkIpFloat8_t, _ipPIC_PIC, A1, A2, A3, A4); \
- break; \
- default: \
- fprintf( stderr, \
- "sorry, %s: datatype (%i/%i) not supported for %s.\n", \
- __FILE__, (_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe, #_ipPIC_CMD ); \
- break; \
- }
-
-#define mitkIpPicFORALL_5( _ipPIC_CMD, _ipPIC_PIC, A1, A2, A3, A4, A5 ) \
- switch( mitkIpPicDR((_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe) ) \
- { \
- case mitkIpPicDR( mitkIpPicInt, 8 ): \
- _ipPIC_CMD(mitkIpInt1_t, _ipPIC_PIC, A1, A2, A3, A4, A5); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 8 ): \
- _ipPIC_CMD(mitkIpUInt1_t, _ipPIC_PIC, A1, A2, A3, A4, A5); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 16 ): \
- _ipPIC_CMD(mitkIpInt2_t, _ipPIC_PIC, A1, A2, A3, A4, A5); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 16 ): \
- _ipPIC_CMD(mitkIpUInt2_t, _ipPIC_PIC, A1, A2, A3, A4, A5); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 32 ): \
- _ipPIC_CMD(mitkIpInt4_t, _ipPIC_PIC, A1, A2, A3, A4, A5); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 32 ): \
- _ipPIC_CMD(mitkIpUInt4_t, _ipPIC_PIC, A1, A2, A3, A4, A5); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 32 ): \
- _ipPIC_CMD(mitkIpFloat4_t, _ipPIC_PIC, A1, A2, A3, A4, A5); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 64 ): \
- _ipPIC_CMD(mitkIpFloat8_t, _ipPIC_PIC, A1, A2, A3, A4, A5); \
- break; \
- default: \
- fprintf( stderr, \
- "sorry, %s: datatype (%i/%i) not supported for %s.\n", \
- __FILE__, (_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe, #_ipPIC_CMD ); \
- break; \
- }
-
-#define mitkIpPicFORALL_6( _ipPIC_CMD, _ipPIC_PIC, A1, A2, A3, A4, A5, A6 ) \
- switch( mitkIpPicDR((_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe) ) \
- { \
- case mitkIpPicDR( mitkIpPicInt, 8 ): \
- _ipPIC_CMD(mitkIpInt1_t, _ipPIC_PIC, A1, A2, A3, A4, A5, A6); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 8 ): \
- _ipPIC_CMD(mitkIpUInt1_t, _ipPIC_PIC, A1, A2, A3, A4, A5, A6); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 16 ): \
- _ipPIC_CMD(mitkIpInt2_t, _ipPIC_PIC, A1, A2, A3, A4, A5, A6); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 16 ): \
- _ipPIC_CMD(mitkIpUInt2_t, _ipPIC_PIC, A1, A2, A3, A4, A5, A6); \
- break; \
- case mitkIpPicDR( mitkIpPicInt, 32 ): \
- _ipPIC_CMD(mitkIpInt4_t, _ipPIC_PIC, A1, A2, A3, A4, A5, A6); \
- break; \
- case mitkIpPicDR( mitkIpPicUInt, 32 ): \
- _ipPIC_CMD(mitkIpUInt4_t, _ipPIC_PIC, A1, A2, A3, A4, A5, A6); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 32 ): \
- _ipPIC_CMD(mitkIpFloat4_t, _ipPIC_PIC, A1, A2, A3, A4, A5, A6); \
- break; \
- case mitkIpPicDR( mitkIpPicFloat, 64 ): \
- _ipPIC_CMD(mitkIpFloat8_t, _ipPIC_PIC, A1, A2, A3, A4, A5, A6); \
- break; \
- default: \
- fprintf( stderr, \
- "sorry, %s: datatype (%i/%i) not supported for %s.\n", \
- __FILE__, (_ipPIC_PIC)->type, (_ipPIC_PIC)->bpe, #_ipPIC_CMD ); \
- break; \
- }
-
-#define _mitkIpPicGET_PIXEL(TYPE,PIC,X,Y,RESULT) \
-{ \
- TYPE* data = (TYPE *) (PIC)->data \
- + (X) + (Y) * (PIC)->n[0]; \
- RESULT = *data; \
-}
-
-#define _mitkIpPicPUT_PIXEL(TYPE,PIC,X,Y,VALUE) \
-{ \
- TYPE* data = (TYPE *) (PIC)->data \
- + (X) + (Y) * (PIC)->n[0]; \
- *data = VALUE; \
-}
-
-#define mitkIpPicGET_PIXEL(PIC,X,Y,RESULT) \
-{ \
- mitkIpPicFORALL_3(_mitkIpPicGET_PIXEL,PIC,X,Y,RESULT); \
-}
-
-#define mitkIpPicPUT_PIXEL(PIC,X,Y,RESULT) \
-{ \
- mitkIpPicFORALL_3(_mitkIpPicPUT_PIXEL,PIC,X,Y,RESULT); \
-}
-
-#define _mitkIpPicGET_PIXEL_RGB(TYPE,PIC,X,Y,R,G,B) \
-{ \
- mitkIpUInt4_t skip = (PIC)->n[0] * (PIC)->n[1]; \
- TYPE* data = (TYPE *) (PIC)->data + (X) + (Y) * (PIC)->n[0]; \
- R = *(data); \
- G = *(data + skip); \
- B = *(data + skip + skip); \
-}
-
-#define _mitkIpPicPUT_PIXEL_RGB(TYPE,PIC,X,Y,R,G,B) \
-{ \
- mitkIpUInt4_t skip = (PIC)->n[0] * (PIC)->n[1]; \
- TYPE* data = (TYPE *) (PIC)->data + (X) + (Y) * (PIC)->n[0]; \
- *data = (R); \
- *(data + skip) = (G); \
- *(data + skip + skip) = (B); \
-}
-
-#define mitkIpPicGET_PIXEL_RGB(PIC,X,Y,R,G,B) \
-{ \
- mitkIpPicFORALL_5(_mitkIpPicGET_PIXEL_RGB,PIC,X,Y,R,G,B); \
-}
-
-#define mitkIpPicPUT_PIXEL_RGB(PIC,X,Y,R,G,B) \
-{ \
- mitkIpPicFORALL_5(_mitkIpPicPUT_PIXEL_RGB,PIC,X,Y,R,G,B); \
-}
-
-#define USE_ZLIB /**/
-#ifdef USE_ZLIB
-#ifdef USE_ITKZLIB
-# define mitkIpPicFile_t gzFile
-# define mitkIpPicFOpen gzopen
-# define mitkIpPicFTell gztell
-# define mitkIpPicFSeek gzseek
-# define mitkIpPicFRead(buf, bsize, count, file) gzread((file),(buf),((count)*(bsize)))
-# define mitkIpPicFWrite _mitkIpPicFWrite
-# define mitkIpPicFEOF gzeof
-# define mitkIpPicFClose gzclose
-# include "itk_zlib.h"
-#else
-# define mitkIpPicFile_t gzFile
-# define mitkIpPicFOpen gzopen
-# define mitkIpPicFTell gztell
-# define mitkIpPicFSeek gzseek
-# define mitkIpPicFRead(buf, bsize, count, file) gzread((file),(buf),((count)*(bsize)))
-# define mitkIpPicFWrite _mitkIpPicFWrite
-# define mitkIpPicFEOF gzeof
-# define mitkIpPicFClose gzclose
-# include <zlib.h>
-#endif
-#else
-# define mitkIpPicFile_t FILE *
-# define mitkIpPicFOpen fopen
-# define mitkIpPicFTell ftell
-# define mitkIpPicFSeek fseek
-# define mitkIpPicFRead fread
-# define mitkIpPicFWrite fwrite
-# define mitkIpPicFEOF feof
-# define mitkIpPicFClose fclose
-#endif
-
-
-#ifdef _mitkIpENDIAN_IS_LITTLE
-# define mitkIpPicFReadLE mitkIpPicFRead
-# define mitkIpPicFReadBE mitkIpPicFReadCvt
-#else
-# define mitkIpPicFReadLE mitkIpPicFReadCvt
-# define mitkIpPicFReadBE mitkIpPicFRead
-#endif
-
-#ifdef _mitkIpENDIAN_IS_LITTLE
-# define mitkIpPicFWriteLE mitkIpPicFWrite
-# define mitkIpPicFWriteBE mitkIpPicFWriteCvt
-#else
-# define mitkIpPicFWriteLE mitkIpPicFWriteCvt
-# define mitkIpPicFWriteBE mitkIpPicFWrite
-#endif
-
-
-#ifdef _mitkIpENDIAN_IS_LITTLE
-# define mitkIpFReadLE fread
-# define mitkIpFReadBE mitkIpFReadCvt
-#else
-# define mitkIpFReadLE mitkIpFReadCvt
-# define mitkIpFReadBE fread
-#endif
-
-#ifdef _mitkIpENDIAN_IS_LITTLE
-# define mitkIpFWriteLE fwrite
-# define mitkIpFWriteBE mitkIpFWriteCvt
-#else
-# define mitkIpFWriteLE mitkIpFWriteCvt
-# define mitkIpFWriteBE fwrite
-#endif
-
-
-#ifdef WIN
-# undef mitkIpFReadLE
-# define mitkIpFReadLE fread
-#endif
-
-
-
-#ifdef _mitkIpENDIAN_IS_LITTLE
-# define mitkIpCvtFromLE(data, len, bytes)
-# define mitkIpCvtFromBE(data, len, bytes) _mitkIpCvtEndian( (data), (len), (bytes) )
-#else
-# define mitkIpCvtFromLE(data, len, bytes) _mitkIpCvtEndian( (data), (len), (bytes) )
-# define mitkIpCvtFromBE(data, len, bytes)
-#endif
-
-#ifdef _mitkIpENDIAN_IS_LITTLE
-# define mitkIpCpFromLE(source, destination, len, bytes) _mitkIpCp( (source), (destination), (len) )
-# define mitkIpCpFromBE(source, destination, len, bytes) _mitkIpCpCvtEndian( (source), (destination), (len), (bytes) )
-#else
-# define mitkIpCpFromLE(source, destination, len, bytes) _mitkIpCpCvtEndian( (source), (destination), (len), (bytes) )
-# define mitkIpCpFromBE(source, destination, len, bytes) _mitkIpCp( (source), (destination), (len) )
-#endif
-
-#ifdef _mitkIpENDIAN_IS_LITTLE
-# define mitkIpCpToLE(source, destination, len, bytes) _mitkIpCp( (source), (destination), (len) )
-# define mitkIpCpToBE(source, destination, len, bytes) _mitkIpCpCvtEndian( (source), (destination), (len), (bytes) )
-#else
-# define mitkIpCpToLE(source, destination, len, bytes) _mitkIpCpCvtEndian( (source), (destination), (len), (bytes) )
-# define mitkIpCpToBE(source, destination, len, bytes) _mitkIpCp( (source), (destination), (len) )
-#endif
-
-
-#define mitkIpEndianSwap2(x) ((((x) >> 8) & 0x00FF) | (((x) << 8) & 0xFF00))
-
-#define mitkIpEndianSwap4(x) ((((x) >> 24) & 0x000000FF) | (((x) << 24) & 0xFF000000)) \
- | ((((x) >> 8) & 0x0000FF00) | (((x) << 8) & 0x00FF0000))
-
-/*
-** NOTE: these macros *DO NOT* work for in-place transformations.
-*/
-/*
-** maybe ipEndianSwap should be used
-*/
-#ifdef _mitkIpENDIAN_IS_LITTLE
-# define mitkIpInt2FromLE(from, to) *((mitkIpInt2_t *)(to)) = *((mitkIpInt2_t *)(from))
-# define mitkIpInt4FromLE(from, to) *((mitkIpInt4_t *)(to)) = *((mitkIpInt4_t *)(from))
-# define mitkIpUInt2FromLE(from, to) mitkIpInt2FromLE(from, to)
-# define mitkIpUInt4FromLE(from, to) mitkIpInt4FromLE(from, to)
-# define mitkIpFloat4FromLE(from, to) mitkIpInt4FromLE(from, to)
-# define mitkIpFloat8FromLE(from, to) *((mitkIpFloat8_t *)(to)) = *((mitkIpFloat8_t *)(from))
-#else
-# define mitkIpInt2FromLE(from, to) ((char *)(to))[0] = ((char *)(from))[1]; \
- ((char *)(to))[1] = ((char *)(from))[0];
-
-# define mitkIpInt4FromLE(from, to) ((char *)(to))[0] = ((char *)(from))[3]; \
- ((char *)(to))[1] = ((char *)(from))[2]; \
- ((char *)(to))[2] = ((char *)(from))[1]; \
- ((char *)(to))[3] = ((char *)(from))[0];
-# define mitkIpUInt2FromLE(from, to) mitkIpInt2FromLE(from, to)
-# define mitkIpUInt4FromLE(from, to) mitkIpInt4FromLE(from, to)
-# define mitkIpFloat4FromLE(from, to) mitkIpInt4FromLE(from, to)
-# define mitkIpFloat8FromLE(from, to) ((char *)(to))[0] = ((char *)(from))[7]; \
- ((char *)(to))[1] = ((char *)(from))[6]; \
- ((char *)(to))[2] = ((char *)(from))[5]; \
- ((char *)(to))[3] = ((char *)(from))[4]; \
- ((char *)(to))[4] = ((char *)(from))[3]; \
- ((char *)(to))[5] = ((char *)(from))[2]; \
- ((char *)(to))[6] = ((char *)(from))[1]; \
- ((char *)(to))[7] = ((char *)(from))[0];
-#endif /* _mitkIpENDIAN_IS_LITTLE */
-
-/*
-** NOTE: Most architectures are symmetrical with respect to conversions.
-*/
-#define mitkIpInt2ToLE(from, to) mitkIpInt2FromLE(from, to)
-#define mitkIpInt4ToLE(from, to) mitkIpInt4FromLE(from, to)
-#define mitkIpUInt2ToLE(from, to) mitkIpUInt2FromLE(from, to)
-#define mitkIpUInt4ToLE(from, to) mitkIpUInt4FromLE(from, to)
-#define mitkIpFloat4ToLE(from, to) mitkIpFloat4FromLE(from, to)
-#define mitkIpFloat8ToLE(from, to) mitkIpFloat8FromLE(from, to)
-
-
-/*
-** types for the pic format
-*/
-
-typedef char mitkIpPicTag_t[_mitkIpPicTAGLEN];
-
-typedef enum
- {
- mitkIpPicUnknown = 0,
- mitkIpPicBool = 1,
- mitkIpPicASCII = 2,
- mitkIpPicInt = 3,
- mitkIpPicUInt = 4,
- mitkIpPicFloat = 5,
- mitkIpPicNonUniform = 7,
- mitkIpPicTSV = 8,
- /* ---- add new types before this line !!! ----*/
- /* ---- don't forget to add a new type also to mitkIpPicType.c !!! ----*/
- _mitkIpPicTypeMax
- } mitkIpPicType_t;
-
-/*
-typedef enum
- {
- mitkIpPicUnknown_m = 0,
- mitkIpPicDescriptor_m = 0xDDDD
- } _mitkIpPicMagic_t;
-*/
-
-
-typedef struct
- {
- char tag[_mitkIpPicTAGLEN+1]; /* name of this tag */
- mitkIpPicType_t type; /* datatype of the value */
- mitkIpUInt4_t bpe; /* bits per element */
- mitkIpUInt4_t dim; /* number of dimensions */
- mitkIpUInt4_t n[_mitkIpPicNDIM]; /* size of dimension n[i] */
- void *value; /* the value */
- } mitkIpPicTSV_t; /* Tag Structure Value */
-
-typedef struct _mitkIpPicTagsElement_s
- {
- mitkIpPicTSV_t *tsv;
- struct _mitkIpPicTagsElement_s *prev;
- struct _mitkIpPicTagsElement_s *next;
- } _mitkIpPicTagsElement_t;
-
-typedef struct
- {
- mitkIpPicTag_t version;
- _mitkIpPicTagsElement_t *tags_head;
- mitkIpBool_t write_protect;
- long pixel_start_in_file;
- struct mitkIpPicDescriptor *lender; /* lender of image data */
- mitkIpUInt4_t borrower; /* borrower of image data */
- mitkIpUInt4_t ref; /* reference counter */
- } _mitkIpPicInfo_t;
-
-typedef struct mitkIpPicDescriptor
- {
- void *data; /* pointer to 'image' data */
- _mitkIpPicInfo_t *info; /* pointer to the PicInfo structure */
- mitkIpPicType_t type; /* datatype of the data */
- mitkIpUInt4_t bpe; /* bits per element */
- mitkIpUInt4_t dim; /* number of dimensions */
- mitkIpUInt4_t n[_mitkIpPicNDIM]; /* size of dimension n[i] */
-#ifdef WIN
- HANDLE hdata;
-#endif
- } mitkIpPicDescriptor;
-
-
-#if defined(__cplusplus) || defined(c_plusplus)
-extern "C" {
-#endif
-
-extern _mitkIpEndian_t _mitkIpEndian( void );
-
-extern void _mitkIpCp( void *source, void *destination, unsigned long int len );
-extern void _mitkIpCvtEndian( void *data, unsigned long int len, unsigned char bytes );
-extern void _mitkIpCpCvtEndian( void *source, void *destination, unsigned long int len, unsigned char bytes );
-
-extern mitkIpPicFile_t _mitkIpPicOpenPicFileIn( const char *path );
-extern int mitkIpPicAccess( const char *path, int mode );
-extern int mitkIpPicRemoveFile( const char *path );
-
-extern mitkIpBool_t mitkIpPicGetWriteCompression( void );
-extern mitkIpBool_t mitkIpPicSetWriteCompression( mitkIpBool_t compression );
-
-extern size_t mitkIpFReadCvt( void *ptr, size_t size, size_t nitems, FILE *stream );
-extern size_t _mitkIpFWrite( void *ptr, size_t size, size_t nitems, FILE *stream );
-
-#define _mitkIpPicHAS_CAN_READ_COMPRESSED
-extern mitkIpBool_t _mitkIpPicCanReadCompressed;
-extern size_t mitkIpPicFReadCvt( void *ptr, size_t size, size_t nitems, mitkIpPicFile_t stream );
-
-#define _mitkIpPicHAS_CAN_WRITE_COMPRESSED
-extern mitkIpBool_t _mitkIpPicCanWriteCompressed;
-extern size_t mitkIpPicFWriteCvt( void *ptr, size_t size, size_t nitems, mitkIpPicFile_t stream );
-
-extern mitkIpPicDescriptor *mitkIpPicNew( void );
-extern void mitkIpPicClear( mitkIpPicDescriptor *pic );
-extern void mitkIpPicFree( mitkIpPicDescriptor *pic );
-
-extern mitkIpUInt4_t _mitkIpPicSize(
-#if defined(__cplusplus) || defined(c_plusplus)
- const
-#endif
- mitkIpPicDescriptor *pic );
-
-extern mitkIpUInt4_t _mitkIpPicElements( mitkIpPicDescriptor *pic );
-
-extern mitkIpUInt4_t _mitkIpPicTSVSize( mitkIpPicTSV_t *tsv );
-extern mitkIpUInt4_t _mitkIpPicTSVElements( mitkIpPicTSV_t *tsv );
-
-extern mitkIpPicDescriptor *mitkIpPicClone( mitkIpPicDescriptor *pic );
-
-extern mitkIpPicDescriptor *_mitkIpPicCopySlice( mitkIpPicDescriptor *pic, mitkIpPicDescriptor *pic_in, mitkIpUInt4_t slice );
-
-extern mitkIpPicDescriptor *_mitkIpPicOldGet( FILE *infile, mitkIpPicDescriptor *pic );
-extern mitkIpPicDescriptor *_mitkIpPicOldGetHeader( FILE *infile, mitkIpPicDescriptor *pic );
-extern mitkIpPicDescriptor *_mitkIpPicOldGetSlice( FILE *infile, mitkIpPicDescriptor *pic, mitkIpUInt4_t slice );
-
-
-extern mitkIpPicDescriptor *mitkIpPicCopyHeader( mitkIpPicDescriptor *pic, mitkIpPicDescriptor *pic_new );
-
-extern mitkIpPicDescriptor *mitkIpPicGet( const char *picfile_name, mitkIpPicDescriptor *pic );
-extern mitkIpPicDescriptor *mitkIpPicGetHeader( const char *picfile_name, mitkIpPicDescriptor *pic );
-extern mitkIpPicDescriptor *mitkIpPicGetSlice( const char *picfile_name, mitkIpPicDescriptor *pic, mitkIpUInt4_t slice );
-
-extern _mitkIpPicTagsElement_t *_mitkIpPicReadTags( _mitkIpPicTagsElement_t *head, mitkIpUInt4_t bytes_to_read, FILE *stream, char encryption_type );
-extern _mitkIpPicTagsElement_t *_mitkIpPicInsertTag( _mitkIpPicTagsElement_t *head, mitkIpPicTSV_t *tsv );
-extern _mitkIpPicTagsElement_t *_mitkIpPicFindTag( _mitkIpPicTagsElement_t *head, const char *tag );
-extern mitkIpUInt4_t _mitkIpPicTagsSize( _mitkIpPicTagsElement_t *head );
-extern mitkIpUInt4_t _mitkIpPicTagsNumber( _mitkIpPicTagsElement_t *head );
-extern void _mitkIpPicWriteTags( _mitkIpPicTagsElement_t *head, FILE *stream, char encryption_type );
-extern void _mitkIpPicFreeTags( _mitkIpPicTagsElement_t *head );
-extern mitkIpPicTSV_t *_mitkIpPicCloneTag( mitkIpPicTSV_t *source );
-extern _mitkIpPicTagsElement_t *_mitkIpPicCloneTags( _mitkIpPicTagsElement_t *head );
-
-extern void mitkIpPicAddTag( mitkIpPicDescriptor *pic, mitkIpPicTSV_t *tsv );
-extern void mitkIpPicAddSubTag( mitkIpPicTSV_t *parent, mitkIpPicTSV_t *tsv );
-extern mitkIpPicTSV_t * mitkIpPicDelTag( mitkIpPicDescriptor *pic, const char *tag );
-extern mitkIpPicTSV_t * mitkIpPicDelSubTag( mitkIpPicTSV_t *parent, const char *tag );
-extern mitkIpPicDescriptor *mitkIpPicGetTags( const char *picfile_name, mitkIpPicDescriptor *pic );
-extern mitkIpPicTSV_t *mitkIpPicQueryTag( mitkIpPicDescriptor *pic, const char *t );
-extern mitkIpPicTSV_t *mitkIpPicQuerySubTag( mitkIpPicTSV_t *parent, const char *t );
-extern void mitkIpPicFreeTag( mitkIpPicTSV_t *tsv );
-
-
-extern _mitkIpPicTagsElement_t * _mitkIpPicReadTagsMem( _mitkIpPicTagsElement_t *head, mitkIpUInt4_t bytes_to_read, mitkIpUInt1_t **mem_ptr, char encryption_type );
-extern mitkIpPicDescriptor *mitkIpPicGetMem( mitkIpUInt1_t *mem_pic );
-extern void _mitkIpPicWriteTagsMem( _mitkIpPicTagsElement_t *head, mitkIpUInt1_t **mem_ptr );
-extern mitkIpUInt1_t *mitkIpPicPutMem( mitkIpPicDescriptor *pic, int *mem_size );
-
-
-extern int mitkIpPicPut( const char *picfile_name, mitkIpPicDescriptor *pic );
-extern void mitkIpPicPutSlice( const char *picfile_name, mitkIpPicDescriptor *pic, mitkIpUInt4_t slice );
-
-#define _mitkIpPicInfoNORMAL 0
-#define _mitkIpPicInfoSHORT (1 << 0)
-void _mitkIpPicInfo( FILE *stream, mitkIpPicDescriptor *pic, mitkIpUInt4_t flags );
-void _mitkIpPicInfoPrintTags( FILE *stream, _mitkIpPicTagsElement_t* head, mitkIpUInt4_t level, mitkIpUInt4_t flags );
-
-extern const char *mitkIpPicTypeName( mitkIpUInt4_t type );
-
-#if defined(__cplusplus) || defined(c_plusplus)
-}
-#endif
-
-
-#endif /* _mitkIpPic_h */
diff --git a/Utilities/IpPic/mitkIpPicOldP.h b/Utilities/IpPic/mitkIpPicOldP.h
deleted file mode 100755
index 5a3e07f31c..0000000000
--- a/Utilities/IpPic/mitkIpPicOldP.h
+++ /dev/null
@@ -1,92 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * the old pic header
- *
- * $Log$
- * Revision 1.5 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.3 2000/05/04 12:52:40 ivo
- * inserted BSD style license
- *
- * Revision 1.2 2000/05/04 12:36:01 ivo
- * some doxygen comments.
- *
- * Revision 1.1.1.1 1997/09/06 19:09:59 andre
- * initial import
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision
- *
- *
- *--------------------------------------------------------------------
- *
- */
-
-#ifndef _mitkIpPicOldP_h
-#define _mitkIpPicOldP_h
-
-typedef struct
- {
- mitkIpUInt4_t id,
- dummy1,
- dummy2,
- conv,
- rank,
- n1,
- n2,
- n3,
- n4,
- n5,
- n6,
- n7,
- n8,
- type,
- ntxt,
- ltxt;
- } _mitkIpPicOldHeader;
-#endif /* ifdef _mitkIpPicOldP_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
diff --git a/Utilities/IpPic/mitkIpPicTypeMultiplex.h b/Utilities/IpPic/mitkIpPicTypeMultiplex.h
deleted file mode 100644
index 7c515e335a..0000000000
--- a/Utilities/IpPic/mitkIpPicTypeMultiplex.h
+++ /dev/null
@@ -1,730 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/** @file
-*
-*Module Name:mitkIpPicTypeMultiplex
-*
-*Module Klasse: ADT
-*
-*Beschreibung:Multiplexing a method with the image datatyp.
-*The image is the first parameter.
-*The method must be about a template method.
-*The number of parameter is constricted by 16
-*
-*Method with two parameter and without a return value:
-*mitkIpPicTypeMultiplex2( funktionsname, parameter1, Parameter2 );
-*
-*Method with one parameter and a return value:
-*mitkIpPicTypeMultiplexR1( funktionsname, r�ckgabewert, parameter );
-*
-*If R is set the method return a value
-*The number set the count of parameter
-*
-*exported classes and methods:
-*no one
-*
-*imported classes and methods:
-*std::complex
-*
-*@warning These module is not finished
-*
-*
-*@version 1.0
-*
-* @date 07.09.2000
-*
-* @author Marcus Vetter
-*
-*/
-
-#ifndef IP_PIC_TYPE_MULTIPLEX_H
-#define IP_PIC_TYPE_MULTIPLEX_H
-
-#include "mitkIpPic.h"
-//#include <complex>
-
-#define mitkIpPicTypeMultiplex0( function, pic ) \
-{ \
-if ( ( pic->type == mitkIpPicInt || pic->type == mitkIpPicUInt ) && pic->bpe == 1 ){ \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
-function<char>( pic ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic ); \
-} \
-}
-
-#define mitkIpPicTypeMultiplex1( function, pic, param1 ) \
-{ \
-if ( ( pic->type == mitkIpPicInt || pic->type == mitkIpPicUInt ) && pic->bpe == 1 ){ \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
-function<char>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic, param1 ); \
-} \
-}
-/*
-else if ( pic->type == mitkIpPicComplex && pic->bpe == 64 ){
-function<std::complex<float> >( pic, param1 );
-} else if ( pic->type == mitkIpPicComplex && pic->bpe == 128 ){
-function<std::complex<double> >( pic, param1 );
-}
-*/
-
-#define mitkIpPicTypeMultiplex2( function, pic, param1, param2 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- function<char>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic, param1, param2 ); \
-} \
-}
-/*
-else if ( pic->type == mitkIpPicComplex && pic->bpe == 64 ){
-function<std::complex<float> >( pic, param1, param2 );
-} else if ( pic->type == mitkIpPicComplex && pic->bpe == 128 ){
-function<std::complex<double> >( pic, param1, param2 );
-}
-*/
-#define mitkIpPicTypeMultiplex3( function, pic, param1, param2, param3 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- function<char>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic, param1, param2, param3 ); \
-} \
-}
-/*else if ( pic->type == mitkIpPicComplex && pic->bpe == 64 ){
-function<std::complex<float> >( pic, param1, param2, param3 );
-} else if ( pic->type == mitkIpPicComplex && pic->bpe == 128 ){
-function<std::complex<double> >( pic, param1, param2, param3 );
-}*/
-
-#define mitkIpPicTypeMultiplex4( function, pic, param1, param2, param3, param4 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- function<char>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic, param1, param2, param3, param4 ); \
-} \
-}
-/*
-else if ( pic->type == mitkIpPicComplex && pic->bpe == 64 ){
-function<std::complex<float> >( pic, param1, param2, param3, param4 );
-} else if ( pic->type == mitkIpPicComplex && pic->bpe == 128 ){
-function<std::complex<double> >( pic, param1, param2, param3, param4 );
-}*/
-
-#define mitkIpPicTypeMultiplex5( function, pic, param1, param2, param3, param4, param5 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- function<char>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic, param1, param2, param3, param4, param5 ); \
-} \
-}
-/* else if ( pic->type == mitkIpPicComplex && pic->bpe == 64 ){
-function<std::complex<float> >( pic, param1, param2, param3, param4, param5 );
-} else if ( pic->type == mitkIpPicComplex && pic->bpe == 128 ){
-function<std::complex<double> >( pic, param1, param2, param3, param4, param5 );
-}
-*/
-#define mitkIpPicTypeMultiplex6( function, pic, param1, param2, param3, param4, param5, param6 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- function<char>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic, param1, param2, param3, param4, param5, param6 ); \
-} \
-}
-/*else if ( pic->type == mitkIpPicComplex && pic->bpe == 64 ){
-function<std::complex<float> >( pic, param1, param2, param3, param4, param5, param6 );
-} else if ( pic->type == mitkIpPicComplex && pic->bpe == 128 ){
-function<std::complex<double> >( pic, param1, param2, param3, param4, param5, param6 );
-}*/
-
-#define mitkIpPicTypeMultiplex7( function, pic, param1, param2, param3, param4, param5, param6, param7 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- function<char>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} \
-}
-/*else if ( pic->type == mitkIpPicComplex && pic->bpe == 64 ){
-function<std::complex<float> >( pic, param1, param2, param3, param4, param5, param6 );
-} else if ( pic->type == mitkIpPicComplex && pic->bpe == 128 ){
-function<std::complex<double> >( pic, param1, param2, param3, param4, param5, param6 );
-}*/
-
-#define mitkIpPicTypeMultiplex7( function, pic, param1, param2, param3, param4, param5, param6, param7 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- function<char>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} \
-}
-/*else if ( pic->type == mitkIpPicComplex && pic->bpe == 64 ){
-function<std::complex<float> >( pic, param1, param2, param3, param4, param5, param6 );
-} else if ( pic->type == mitkIpPicComplex && pic->bpe == 128 ){
-function<std::complex<double> >( pic, param1, param2, param3, param4, param5, param6 );
-}*/
-
-#define mitkIpPicTypeMultiplex8( function, pic, param1, param2, param3, param4, param5, param6, param7, param8) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- function<char>( pic, param1, param2, param3, param4, param5, param6, param7, param8); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic, param1, param2, param3, param4, param5, param6, param7, param8); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic, param1, param2, param3, param4, param5, param6, param7, param8); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic, param1, param2, param3, param4, param5, param6, param7, param8); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic, param1, param2, param3, param4, param5, param6, param7, param8); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic, param1, param2, param3, param4, param5, param6, param7, param8); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic, param1, param2, param3, param4, param5, param6, param7, param8); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic, param1, param2, param3, param4, param5, param6, param7, param8); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic, param1, param2, param3, param4, param5, param6, param7, param8); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic, param1, param2, param3, param4, param5, param6, param7, param8); \
-} \
-}
-/*else if ( pic->type == mitkIpPicComplex && pic->bpe == 64 ){
-function<std::complex<float> >( pic, param1, param2, param3, param4, param5, param6 );
-} else if ( pic->type == mitkIpPicComplex && pic->bpe == 128 ){
-function<std::complex<double> >( pic, param1, param2, param3, param4, param5, param6 );
-}*/
-
-#define mitkIpPicTypeMultiplex9( function, pic, param1, param2, param3, param4, param5, param6, param7, param8, param9) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- function<char>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9); \
-} \
-}
-/*else if ( pic->type == mitkIpPicComplex && pic->bpe == 64 ){
-function<std::complex<float> >( pic, param1, param2, param3, param4, param5, param6 );
-} else if ( pic->type == mitkIpPicComplex && pic->bpe == 128 ){
-function<std::complex<double> >( pic, param1, param2, param3, param4, param5, param6 );
-}*/
-
-#define mitkIpPicTypeMultiplex10( function, pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- function<char>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10); \
-} \
-}
-/*else if ( pic->type == mitkIpPicComplex && pic->bpe == 64 ){
-function<std::complex<float> >( pic, param1, param2, param3, param4, param5, param6 );
-} else if ( pic->type == mitkIpPicComplex && pic->bpe == 128 ){
-function<std::complex<double> >( pic, param1, param2, param3, param4, param5, param6 );
-}*/
-
-#define mitkIpPicTypeMultiplex16( function, pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10, param11, param12, param13, param14, param15, param16 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- function<char>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10, param11, param12, param13, param14, param15, param16 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-function<unsigned char>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10, param11, param12, param13, param14, param15, param16 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-function<short>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10, param11, param12, param13, param14, param15, param16 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-function<unsigned short>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10, param11, param12, param13, param14, param15, param16 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-function<int>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10, param11, param12, param13, param14, param15, param16 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-function<unsigned int>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10, param11, param12, param13, param14, param15, param16 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-function<long>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10, param11, param12, param13, param14, param15, param16 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-function<unsigned long>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10, param11, param12, param13, param14, param15, param16 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-function<float>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10, param11, param12, param13, param14, param15, param16 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-function<double>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9, param10, param11, param12, param13, param14, param15, param16 ); \
-} \
-}
-/*else if ( pic->type == mitkIpPicComplex && pic->bpe == 64 ){
-function<std::complex<float> >( pic, param1, param2, param3, param4, param5, param6 );
-} else if ( pic->type == mitkIpPicComplex && pic->bpe == 128 ){
-function<std::complex<double> >( pic, param1, param2, param3, param4, param5, param6 );
-}*/
-/**
-* with return value
-*/
-
-#define mitkIpPicTypeMultiplexR0( function, pic, returnValue ) \
-{ \
-if ( ( pic->type == mitkIpPicInt || pic->type == mitkIpPicUInt ) && pic->bpe == 1 ){ \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
-returnValue = function<char>( pic ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-returnValue = function<unsigned char>( pic ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-returnValue = function<short>( pic ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-returnValue = function<unsigned short>( pic ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-returnValue = function<int>( pic ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-returnValue = function<unsigned int>( pic ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-returnValue = function<long>( pic ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-returnValue = function<unsigned long>( pic ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-returnValue = function<float>( pic ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-returnValue = function<double>( pic ); \
-} \
-}
-
-#define mitkIpPicTypeMultiplexR1( function, pic, returnValue, param1 ) \
-{ \
-if ( ( pic->type == mitkIpPicInt || pic->type == mitkIpPicUInt ) && pic->bpe == 1 ){ \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
-returnValue = function<char>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-returnValue = function<unsigned char>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-returnValue = function<short>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-returnValue = function<unsigned short>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-returnValue = function<int>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-returnValue = function<unsigned int>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-returnValue = function<long>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-returnValue = function<unsigned long>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-returnValue = function<float>( pic, param1 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-returnValue = function<double>( pic, param1 ); \
-} \
-}
-
-#define mitkIpPicTypeMultiplexR2( function, pic, returnValue, param1, param2 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- returnValue = function<char>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-returnValue = function<unsigned char>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-returnValue = function<short>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-returnValue = function<unsigned short>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-returnValue = function<int>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-returnValue = function<unsigned int>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-returnValue = function<long>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-returnValue = function<unsigned long>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-returnValue = function<float>( pic, param1, param2 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-returnValue = function<double>( pic, param1, param2 ); \
-} \
-}
-
-#define mitkIpPicTypeMultiplexR3( function, pic, returnValue, param1, param2, param3 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- returnValue = function<char>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-returnValue = function<unsigned char>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-returnValue = function<short>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-returnValue = function<unsigned short>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-returnValue = function<int>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-returnValue = function<unsigned int>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-returnValue = function<long>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-returnValue = function<unsigned long>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-returnValue = function<float>( pic, param1, param2, param3 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-returnValue = function<double>( pic, param1, param2, param3 ); \
-} \
-}
-
-#define mitkIpPicTypeMultiplexR4( function, pic, returnValue, param1, param2, param3, param4 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- returnValue = function<char>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-returnValue = function<unsigned char>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-returnValue = function<short>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-returnValue = function<unsigned short>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-returnValue = function<int>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-returnValue = function<unsigned int>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-returnValue = function<long>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-returnValue = function<unsigned long>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-returnValue = function<float>( pic, param1, param2, param3, param4 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-returnValue = function<double>( pic, param1, param2, param3, param4 ); \
-} \
-}
-
-#define mitkIpPicTypeMultiplexR5( function, pic, returnValue, param1, param2, param3, param4, param5 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- returnValue = function<char>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-returnValue = function<unsigned char>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-returnValue = function<short>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-returnValue = function<unsigned short>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-returnValue = function<int>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-returnValue = function<unsigned int>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-returnValue = function<long>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-returnValue = function<unsigned long>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-returnValue = function<float>( pic, param1, param2, param3, param4, param5 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-returnValue = function<double>( pic, param1, param2, param3, param4, param5 ); \
-} \
-}
-
-#define mitkIpPicTypeMultiplexR6( function, pic, returnValue, param1, param2, param3, param4, param5, param6 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- returnValue = function<char>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-returnValue = function<unsigned char>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-returnValue = function<short>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-returnValue = function<unsigned short>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-returnValue = function<int>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-returnValue = function<unsigned int>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-returnValue = function<long>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-returnValue = function<unsigned long>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-returnValue = function<float>( pic, param1, param2, param3, param4, param5, param6 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-returnValue = function<double>( pic, param1, param2, param3, param4, param5, param6 ); \
-} \
-}
-
-#define mitkIpPicTypeMultiplexR7( function, pic, returnValue, param1, param2, param3, param4, param5, param6, param7 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- returnValue = function<char>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-returnValue = function<unsigned char>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-returnValue = function<short>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-returnValue = function<unsigned short>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-returnValue = function<int>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-returnValue = function<unsigned int>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-returnValue = function<long>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-returnValue = function<unsigned long>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-returnValue = function<float>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-returnValue = function<double>( pic, param1, param2, param3, param4, param5, param6, param7 ); \
-} \
-}
-
-#define mitkIpPicTypeMultiplexR8( function, pic, returnValue, param1, param2, param3, param4, param5, param6, param7, param8 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- returnValue = function<char>( pic, param1, param2, param3, param4, param5, param6, param7, param8 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-returnValue = function<unsigned char>( pic, param1, param2, param3, param4, param5, param6, param7, param8 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-returnValue = function<short>( pic, param1, param2, param3, param4, param5, param6, param7, param8 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-returnValue = function<unsigned short>( pic, param1, param2, param3, param4, param5, param6, param7, param8 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-returnValue = function<int>( pic, param1, param2, param3, param4, param5, param6, param7, param8 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-returnValue = function<unsigned int>( pic, param1, param2, param3, param4, param5, param6, param7, param8 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-returnValue = function<long>( pic, param1, param2, param3, param4, param5, param6, param7, param8 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-returnValue = function<unsigned long>( pic, param1, param2, param3, param4, param5, param6, param7, param8 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-returnValue = function<float>( pic, param1, param2, param3, param4, param5, param6, param7, param8 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-returnValue = function<double>( pic, param1, param2, param3, param4, param5, param6, param7, param8 ); \
-} \
-}
-
-#define mitkIpPicTypeMultiplexR9( function, pic, returnValue, param1, param2, param3, param4, param5, param6, param7, param8, param9 ) \
-{ \
-if ( pic->type == mitkIpPicInt && pic->bpe == 8 ){ \
- returnValue = function<char>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ){ \
-returnValue = function<unsigned char>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ){ \
-returnValue = function<short>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ){ \
-returnValue = function<unsigned short>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ){ \
-returnValue = function<int>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ){ \
-returnValue = function<unsigned int>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9 ); \
-} else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ){ \
-returnValue = function<long>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9 ); \
-} else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ){ \
-returnValue = function<unsigned long>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ){ \
-returnValue = function<float>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9 ); \
-} else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ){ \
-returnValue = function<double>( pic, param1, param2, param3, param4, param5, param6, param7, param8, param9 ); \
-} \
-}
-
-#endif // IP_PIC_TYPE_MULTIPLEX_H
diff --git a/Utilities/IpPic/mitkIpTypes.h b/Utilities/IpPic/mitkIpTypes.h
deleted file mode 100755
index 5927d88ba0..0000000000
--- a/Utilities/IpPic/mitkIpTypes.h
+++ /dev/null
@@ -1,122 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *--------------------------------------------------------------------
- * DESCRIPTION
- * defines the ipTypes
- *
- *--------------------------------------------------------------------
- */
-
-#ifndef _mitkIpTypes_h
-#define _mitkIpTypes_h
-
-#if defined (__mips) || (_IBMR2) || (sun) || (__i386__) || (__convex__) || (__alpha) || (__hppa) || (WIN32) || (_WIN32) || defined (__PPC__) || defined (__x86_64__) || defined (__APPLE__)
- typedef signed char mitkIpInt1_t;
- typedef signed short mitkIpInt2_t;
- typedef signed int mitkIpInt4_t;
- typedef unsigned char mitkIpUInt1_t;
- typedef unsigned short mitkIpUInt2_t;
- typedef unsigned int mitkIpUInt4_t;
- typedef float mitkIpFloat4_t;
- typedef double mitkIpFloat8_t;
-#endif
-
-#ifdef DOS
- typedef signed char mitkIpInt1_t;
- typedef signed int mitkIpInt2_t;
- typedef signed long int mitkIpInt4_t;
- typedef unsigned char mitkIpUInt1_t;
- typedef unsigned int mitkIpUInt2_t;
- typedef unsigned long int mitkIpUInt4_t;
- typedef float mitkIpFloat4_t;
- typedef double mitkIpFloat8_t;
-#endif
-
-/*
-** this boolean is NOT a 1 bit value !!!
-** it is NOT intended for 1 bit images !!!
-*/
-typedef enum
- { mitkIpFalse = 0,
- mitkIpTrue = 1
- } mitkIpBool_t;
-
-typedef enum
- {
- mitkIpError = -1, /* general error */
- mitkIpOK = 0, /* no error */
- mitkIpEDIM = 1000 /* wrong number of dimensions */
- } mitkIpError_t;
-
-
-typedef enum
- {
- _mitkIpEndianUnknown = 0,
- _mitkIpEndianLittle = 1,
- _mitkIpEndianBig = 2
- } _mitkIpEndian_t;
-
-typedef enum
- {
- mitkIpTypeUnknown = 0,
- mitkIpTypeStringPtr,
- mitkIpTypeString,
- mitkIpTypeInt1,
- mitkIpTypeInt2,
- mitkIpTypeInt4,
- mitkIpTypeUInt1,
- mitkIpTypeUInt2,
- mitkIpTypeUInt4,
- mitkIpTypeFloat4,
- mitkIpTypeFloat8,
- mitkIpTypeNBytes,
- mitkIpTypeArray,
- mitkIpTypeList,
- mitkIpTypePic,
- mitkIpTypePicTag,
- _mitkIpTypeMAX
- } mitkIpType_t;
-
-#endif /* _mitkIpTypes_h */
-/* DON'T ADD ANYTHING AFTER THIS #endif */
diff --git a/Utilities/IpPic/pic2seq.c b/Utilities/IpPic/pic2seq.c
deleted file mode 100755
index ecaaa6fef2..0000000000
--- a/Utilities/IpPic/pic2seq.c
+++ /dev/null
@@ -1,274 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-/********************************************************************* /
-/ pic2seq /
-/ -------------------------------------------------------------------- /
-/ DESCRIPTION /
-/ /
-/ converts a pic-seq to single pic-files /
-/ /
-/ /
-/ FUNCTION DECLARATION /
-/ /
-/ /
-/ PROTOTYPE CALL /
-/ /
-/ /
-/ PARAMETER /
-/ /
-/ /
-/ RETURN VALUES /
-/ /
-/ 0 - no error occured /
-/ -1 - error oocured /
-/ /
-/ AUTHOR & DATE /
-/ /
-/ Andre Schroeter 08.06.1992 /
-/ /
-/ UPDATES /
-/ /
-/ /
-/ /
-/**********************************************************************/
-static char *what[] = {
- "@(#)seqtopic \t06/92\tGerman Cancer Research Center (DKFZ)\t08.06.1992",
-};
-/* standard include files */
-#include <stdio.h>
-#include <string.h>
-#include <fcntl.h>
-
-#include <mitkIpPic.h>
-
-
-#ifndef FILENAME_MAX
-# define FILENAME_MAX 1024
-#endif
-
-#ifndef Bool
-typedef char Bool;
-# define True 1
-# define False 0
-#endif
-
-void main( int argc, char *argv[] )
-{
- int i;
-
- int n_infiles;
- char **infile_names;
-
- unsigned int n;
- Bool is_number;
- Bool scan_error;
- Bool use_stdin;
- Bool use_stdout;
- Bool use_textfile;
-
- Bool append;
- int soffset;
- int aoffset;
-
- char outfile_name[FILENAME_MAX],
- outfile_string[FILENAME_MAX];
-
- mitkIpPicDescriptor *pic = NULL,*header;
-
-
- /*--------------- commandline scaning starts here -----------*/
- append = False;
- use_stdin = True;
- use_stdout = True;
- scan_error = False;
- use_textfile = False;
-
- aoffset = 0;
- soffset = 0;
-
- n = 1;
- while( n < argc )
- {
- if( *argv[n] == '-' )
- switch( *(argv[n]+1) )
- {
- case 'a': append = True;
- ++aoffset;
- break;
- /*case 'o': use_stdout = False;
- strcpy( outfile_string, argv[n]+2 );
- if( outfile_string[0] == '\0' )
- scan_error = True;
- break;*/
- case 'h':
- case 'H': scan_error = True;
- break;
- case 'f': use_textfile = True;
- ++aoffset;
- break;
- default: fprintf( stderr,
- "%s: sorry, unknown option -%c\n",
- argv[0], *(argv[n]+1) );
- scan_error = True;
- break;
- }
- else
- {
- use_stdin = False;
- strcpy( outfile_string, argv[n] );
- }
- n++;
- }
-
- if( scan_error )
- {
- fprintf( stderr, "Usage: %s -a -f outfile infiles \n", argv[0] );
- fprintf( stderr, " -a appends the infiles to outfile\n" );
- fprintf( stderr, " -f \"infiles\" is a text file containing the list of inputfiles\n" );
- fprintf( stderr, " outfile the outputfile to create\n" );
- fprintf( stderr, " infiles a list of inputfiles\n" );
- exit( -1 );
- }
-
- /*--------------- commandline scaning ends here -------------*/
-
- /* read text file, if specified*/
- if(use_textfile)
- {
- char tmp[FILENAME_MAX];
- FILE *f;
-
- n_infiles=0;
-
- f=fopen(argv[aoffset+2], "rt");
- if(f==NULL)
- {
- fprintf( stderr, "Couldn't open text file containing the list of inputfiles.\n", argv[0] );
- exit( -2 );
- }
-
- while(!feof(f))
- {
- fgets(tmp, 255, f);
- ++n_infiles;
- }
-
- infile_names=malloc(n_infiles*sizeof(char*));
-
- rewind(f);
-
- i=0;
- while(!feof(f))
- {
- char *nl;
- infile_names[i]=malloc(FILENAME_MAX*sizeof(char));
- fgets(infile_names[i], FILENAME_MAX, f);
- nl=infile_names[i]+strlen(infile_names[i])-1;
- if(*nl=='\n') *nl=0;
- if(mitkIpPicAccess(infile_names[i], 4)==0)
- ++i;
- else
- {
- free(infile_names[i]);
- --n_infiles;
- }
- }
- }
- else
- {
- n_infiles=argc-2-aoffset;
- if(n_infiles<=0)
- exit( -3 );
-
- infile_names=malloc(n_infiles*sizeof(char*));
- for(i=0;i<n_infiles;++i)
- infile_names[i]=argv[aoffset+i+2];
- }
-
- /* make filenames */
- if( !use_stdout)
- if( !strchr(outfile_name, '.') )
- strcat( outfile_name, ".seq" );
- if( append )
- {
- pic = mitkIpPicGetHeader( argv[aoffset+1],
- pic );
- if( pic != NULL )
- soffset = pic->n[pic->dim-1];
- else
- soffset = 0;
- }
-
- header=mitkIpPicGetHeader( infile_names[0], NULL);
- header = mitkIpPicGetTags( infile_names[0], header );
-
- for( i=0; i<n_infiles; i++ )
- {
- printf( "%.3i %s\n", i, infile_names[i] );
-
-
-/* pic = mitkIpPicGetSlice( infile_names[i],
- pic,
- 1 );*/
- pic = mitkIpPicGet( infile_names[i],
- pic);
-
- if( pic == NULL )
- {
- fprintf( stderr, "sorry, can't open %s\n", infile_names[i] );
- exit( -1 );
- }
- pic->info->write_protect = mitkIpFalse;
- pic->info->tags_head = _mitkIpPicCloneTags(header->info->tags_head );
- if((i==0) && (!append))
- {
- pic->dim++; pic->n[pic->dim-1]=1;
- mitkIpPicPut(argv[aoffset+1], pic);
- }
- else
- mitkIpPicPutSlice( argv[aoffset+1],
- pic,
- soffset + i + 1 );
-
- }
-
- exit( 0 );
-}
diff --git a/Utilities/IpPic/picinfo.c b/Utilities/IpPic/picinfo.c
deleted file mode 100755
index eeb361ad7d..0000000000
--- a/Utilities/IpPic/picinfo.c
+++ /dev/null
@@ -1,309 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-/*
- * $RCSfile$
- *---------------------------------------------------------------
- * DESCRIPTION
- * prints information about a picfile
- *
- * $Log$
- * Revision 1.7 2002/11/13 17:53:00 ivo
- * new ipPic added.
- *
- * Revision 1.6 2002/10/31 10:00:30 ivo
- * zlib.lib including headers now in win32. gz-extension should work now on every windows.
- * WIN32 define changed to standard _WIN32.
- *
- * Revision 1.5 2002/04/18 19:09:13 ivo
- * compression (zlib) activated.
- *
- * Revision 1.4 2000/05/04 12:52:42 ivo
- * inserted BSD style license
- *
- * Revision 1.3 2000/05/04 12:36:02 ivo
- * some doxygen comments.
- *
- * Revision 1.2 1997/09/15 13:21:22 andre
- * switched to new what string format
- *
- * Revision 1.1.1.1 1997/09/06 19:10:00 andre
- * initial import
- *
- * Revision 0.1 1993/04/02 16:18:39 andre
- * now works on PC, SUN and DECstation
- *
- * Revision 0.0 1993/03/26 12:56:26 andre
- * Initial revision, NO error checking
- *
- *
- *---------------------------------------------------------------
- *
- */
-#ifndef lint
- static char *what = { "@(#)picinfo \t\tGerman Cancer Research Center (DKFZ)\t"__DATE__"\t$Revision$" };
-#endif
-
-/*
-** defines
-*/
-
-/*
-** standard includes
-*/
-#include <stdio.h>
-#include <stdlib.h>
-
-#ifndef _WIN32
-#include <strings.h>
-#else
-#include <string.h>
-#endif
-
-#include <limits.h>
-
-/*
-** ip includefiles
-*/
-#include "mitkIpPic.h"
-
-/*
-** typedefs
-*/
-typedef int Bool;
-#define TRUE 1
-#define FALSE 0
-
-/*
-** private macros
-*/
-#define Min(x, y) (((x) < (y)) ? (x) : (y))
-#define Max(x, y) (((x) > (y)) ? (x) : (y))
-
-
-#define MIN_MAX(min, max, type) \
- for( i=0; i<_mitkIpPicElements(pic); i++ ) \
- { \
- type pixel = ((type *)pic->data)[i]; \
- \
- if( pixel < min ) \
- min = pixel; \
- else if( pixel > max ) \
- max = pixel; \
- }
-
-/*
-** the action starts here
-*/
-int main( int argc, char *argv[] )
-{
- int i;
-
- long min_i = LONG_MAX,
- max_i = LONG_MIN;
- double min_f = LONG_MAX,
- max_f = LONG_MIN;
-
- int n;
- Bool scan_error;
- Bool use_stdin;
-
- Bool show_extrema;
- mitkIpUInt4_t flags;
-
-#ifndef FILENAME_MAX
-#define FILENAME_MAX 256
-#endif
-
- char picfile_name[FILENAME_MAX];
-
- mitkIpPicDescriptor *pic;
-
-
- /*--------------- commandline scaning starts here -----------*/
- use_stdin = TRUE;
- scan_error = FALSE;
-
- show_extrema = FALSE;
- flags = _mitkIpPicInfoNORMAL;
-
- n = 1;
- while( n < argc )
- {
- if( *argv[n] == '-' )
- switch( *(argv[n]+1) )
- {
- case 'e':
- show_extrema = TRUE;
- break;
- case 's':
- flags |= _mitkIpPicInfoSHORT;
- break;
- case 'h':
- case 'H':
- scan_error = TRUE;
- break;
- default: fprintf( stderr, "%s: sorry, unknown option -%c\n", argv[0], *(argv[n]+1) );
- scan_error = TRUE;
- break;
- }
- else
- {
- if( use_stdin )
- {
- use_stdin = FALSE;
- strcpy( picfile_name, argv[n] );
- }
- else
- scan_error = TRUE;
- }
- n++;
- }
-
- if( scan_error )
- {
- fprintf( stderr, "Usage: %s -e -s [picfile]\n", argv[0] );
- fprintf( stderr, " -e calculate the extrema\n" );
- fprintf( stderr, " -s short output\n" );
- fprintf( stderr, " picfile the picfile to examine, if not given stdin is used\n" );
- exit( mitkIpError );
- }
-
- /*--------------- commandline scaning ends here -------------*/
-
- /* make filenames */
- if( !use_stdin)
- if( (strrchr(picfile_name, '/') >= strrchr(picfile_name, '.')) )
- strcat( picfile_name, ".pic" );
-
- /* read picfile */
- if( use_stdin )
- pic = mitkIpPicGetHeader( "stdin",
- NULL );
- else
- {
- pic = mitkIpPicGetHeader( picfile_name,
- NULL );
- pic = mitkIpPicGetTags( picfile_name,
- pic );
- }
-
- if( pic == NULL )
- {
- fprintf( stderr, "sorry, can't read %s\n", picfile_name );
- exit( mitkIpError );
- }
-
- printf( "\n" );
- printf( "%s\n",picfile_name );
-
- printf( "%.*s\n", _mitkIpPicTAGLEN, pic->info->version );
- printf( "--------------------\n" );
-
- printf( "type: %s [%i]\n", mitkIpPicTypeName(pic->type), pic->type );
-
- printf( "bpe : %i\n", pic->bpe );
-
- printf( "dim : %i ", pic->dim );
- for( i=0; i<pic->dim; i++ )
- printf( "[%i] ", pic->n[i] );
- printf( "\n" );
-
- if( pic != NULL
- && pic->info->tags_head != NULL )
- printf( "--------------------\n" );
-
- _mitkIpPicInfoPrintTags( stdout,
- pic->info->tags_head,
- 1,
- flags );
-
- printf( "--------------------\n" );
- printf( "size of the image data: %u\n", _mitkIpPicSize( pic ) );
-
-
- if( show_extrema )
- {
- pic = mitkIpPicGet( picfile_name,
- pic );
-
- switch( mitkIpPicDR( pic->type, pic->bpe ) )
- {
- case mitkIpPicDR( mitkIpPicUInt, 8 ):
- {
- MIN_MAX( min_i, max_i, mitkIpUInt1_t );
- printf( "min: %li, max: %li\n", min_i, max_i );
- }
- break;
- case mitkIpPicDR( mitkIpPicInt, 16 ):
- {
- MIN_MAX( min_i, max_i, mitkIpInt2_t );
- printf( "min: %li, max: %li\n", min_i, max_i );
- }
- break;
- case mitkIpPicDR( mitkIpPicInt, 32 ):
- {
- MIN_MAX( min_i, max_i, mitkIpInt4_t );
- printf( "min: %li, max: %li\n", min_i, max_i );
- }
- break;
- case mitkIpPicDR( mitkIpPicFloat, 32 ):
- {
- MIN_MAX( min_f, max_f, mitkIpFloat4_t );
- printf( "min: %f, max: %f\n", min_f, max_f );
- }
- break;
- case mitkIpPicDR( mitkIpPicFloat, 64 ):
- {
- MIN_MAX( min_f, max_f, mitkIpFloat8_t );
- printf( "min: %f, max: %f\n", min_f, max_f );
- }
- break;
- default :
- printf( "sorry, datatype not supported. (min,max)\n" );
- break;
- }
- }
-
- mitkIpPicFree( pic );
-
- return( 0 );
-}
diff --git a/Utilities/IpPic/test.c b/Utilities/IpPic/test.c
deleted file mode 100755
index a96d506f4b..0000000000
--- a/Utilities/IpPic/test.c
+++ /dev/null
@@ -1,73 +0,0 @@
-/*============================================================================
-
- Copyright (c) German Cancer Research Center (DKFZ)
- All rights reserved.
-
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
-
- - Redistributions of source code must retain the above copyright notice, this
- list of conditions and the following disclaimer.
-
- - Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
-
- - All advertising materials mentioning features or use of this software must
- display the following acknowledgement:
-
- "This product includes software developed by the German Cancer Research
- Center (DKFZ)."
-
- - Neither the name of the German Cancer Research Center (DKFZ) nor the names
- of its contributors may be used to endorse or promote products derived from
- this software without specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE GERMAN CANCER RESEARCH CENTER (DKFZ) AND
- CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING,
- BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
- FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE GERMAN
- CANCER RESEARCH CENTER (DKFZ) OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
- INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
- SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
- CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
- LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
- OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-============================================================================*/
-
-
-#include <stdio.h>
-#include <strings.h>
-
-#include "mitkIpPic.h"
-#include "mitkIpPicAnnotation.h"
-
-int main( int argc, char *argv[] )
-{
- mitkIpPicDescriptor *pic;
- mitkIpPicDescriptor *pic2;
- mitkIpPicTSV_t *tsv;
- mitkIpPicTSV_t *tsv2;
- mitkIpPicTSV_t *tsv3;
- mitkIpPicAnnotation_t a;
- char buff[] = "test test";
-
- printf( "%s\n", _mitkIpEndian()==_mitkIpEndianBig?"BigEndian":"LittleEndian" );
-
- if( argc != 3 )
- exit(-1);
-
- pic = mitkIpPicGet( argv[1],
- NULL );
-
- mitkIpPicSetWriteCompression( mitkIpTrue );
- mitkIpPicPut( argv[2],
- pic );
-
- mitkIpPicFree( pic );
-
- return(0);
-}
diff --git a/Utilities/IpSegmentation/CMakeLists.txt b/Utilities/IpSegmentation/CMakeLists.txt
deleted file mode 100644
index fb533b5b9a..0000000000
--- a/Utilities/IpSegmentation/CMakeLists.txt
+++ /dev/null
@@ -1,10 +0,0 @@
-set(module_options NO_INIT GCC_DEFAULT_VISIBILITY WARNINGS_NO_ERRORS)
-if(MITK_WIN32_FORCE_STATIC)
- list(APPEND module_options FORCE_STATIC)
-endif()
-
-MITK_CREATE_MODULE(
- DEPENDS MitkIpPic MitkIpFunc
- PACKAGE_DEPENDS ANN
- ${module_options}
-)
diff --git a/Utilities/IpSegmentation/GraphicsGems.h b/Utilities/IpSegmentation/GraphicsGems.h
deleted file mode 100644
index 3bd91ad5e4..0000000000
--- a/Utilities/IpSegmentation/GraphicsGems.h
+++ /dev/null
@@ -1,178 +0,0 @@
-/*
- * This code is taken from the Graphics Gems book series by Academic Press.
- *
- * For information on the books and more of the source code
- * you can visit http://tog.acm.org/GraphicsGems/
- *
- * The following note on license is taken from the mentions website:
- *
- * EULA: The Graphics Gems code is copyright-protected.
- * In other words, you cannot claim the text of the code
- * as your own and resell it. Using the code is permitted
- * in any program, product, or library, non-commercial or
- * commercial. Giving credit is not required, though is
- * a nice gesture. The code comes as-is, and if there are
- * any flaws or problems with any Gems code, nobody involved
- * with Gems - authors, editors, publishers, or webmasters
- * - are to be held responsible. Basically, don't be a jerk,
- * and remember that anything free comes with no guarantee.
- *
-*/
-
-/*
- * GraphicsGems.h
- * Version 1.0 - Andrew Glassner
- * from "Graphics Gems", Academic Press, 1990
- */
-
-#ifndef GG_H
-
-#define GG_H 1
-
-/*********************/
-/* 2d geometry types */
-/*********************/
-
-typedef struct Point2Struct { /* 2d point */
- double x, y;
-} Point2;
-typedef Point2 Vector2;
-
-typedef struct IntPoint2Struct { /* 2d integer point */
- int x, y;
-} IntPoint2;
-
-typedef struct Matrix3Struct { /* 3-by-3 matrix */
- double element[3][3];
-} Matrix3;
-
-typedef struct Box2dStruct { /* 2d box */
- Point2 min, max;
-} Box2;
-
-
-/*********************/
-/* 3d geometry types */
-/*********************/
-
-typedef struct Point3Struct { /* 3d point */
- double x, y, z;
-} Point3;
-typedef Point3 Vector3;
-
-typedef struct IntPoint3Struct { /* 3d integer point */
- int x, y, z;
-} IntPoint3;
-
-
-typedef struct Matrix4Struct { /* 4-by-4 matrix */
- double element[4][4];
-} Matrix4;
-
-typedef struct Box3dStruct { /* 3d box */
- Point3 min, max;
-} Box3;
-
-
-
-/***********************/
-/* one-argument macros */
-/***********************/
-
-/* absolute value of a */
-#define ABS(a) (((a)<0) ? -(a) : (a))
-
-/* round a to nearest int */
-#define ROUND(a) ((a)>0 ? (int)((a)+0.5) : -(int)(0.5-(a)))
-
-/* take sign of a, either -1, 0, or 1 */
-#define ZSGN(a) (((a)<0) ? -1 : (a)>0 ? 1 : 0)
-
-/* take binary sign of a, either -1, or 1 if >= 0 */
-#define SGN(a) (((a)<0) ? -1 : 1)
-
-/* shout if something that should be true isn't */
-#define ASSERT(x) \
-if (!(x)) fprintf(stderr," Assert failed: x\n");
-
-/* square a */
-#define SQR(a) ((a)*(a))
-
-
-/***********************/
-/* two-argument macros */
-/***********************/
-
-/* find minimum of a and b */
-#define MIN(a,b) (((a)<(b))?(a):(b))
-
-/* find maximum of a and b */
-#define MAX(a,b) (((a)>(b))?(a):(b))
-
-/* swap a and b (see Gem by Wyvill) */
-#define SWAP(a,b) { a^=b; b^=a; a^=b; }
-
-/* linear interpolation from l (when a=0) to h (when a=1)*/
-/* (equal to (a*h)+((1-a)*l) */
-#define LERP(a,l,h) ((l)+(((h)-(l))*(a)))
-
-/* clamp the input to the specified range */
-#define CLAMP(v,l,h) ((v)<(l) ? (l) : (v) > (h) ? (h) : v)
-
-
-/****************************/
-/* memory allocation macros */
-/****************************/
-
-/* create a new instance of a structure (see Gem by Hultquist) */
-#define NEWSTRUCT(x) (struct x *)(malloc((unsigned)sizeof(struct x)))
-
-/* create a new instance of a type */
-#define NEWTYPE(x) (x *)(malloc((unsigned)sizeof(x)))
-
-
-/********************/
-/* useful constants */
-/********************/
-
-#define PI 3.141592 /* the venerable pi */
-#define PITIMES2 6.283185 /* 2 * pi */
-#define PIOVER2 1.570796 /* pi / 2 */
-#define E 2.718282 /* the venerable e */
-#define SQRT2 1.414214 /* sqrt(2) */
-#define SQRT3 1.732051 /* sqrt(3) */
-#define GOLDEN 1.618034 /* the golden ratio */
-#define DTOR 0.017453 /* convert degrees to radians */
-#define RTOD 57.29578 /* convert radians to degrees */
-
-
-/************/
-/* booleans */
-/************/
-
-#define TRUE 1
-#define FALSE 0
-#define ON 1
-#define OFF 0
-typedef int boolean; /* boolean data type */
-typedef boolean flag; /* flag data type */
-
-extern double V2SquaredLength(), V2Length();
-extern double V2Dot(), V2DistanceBetween2Points();
-extern Vector2 *V2Negate(), *V2Normalize(), *V2Scale(), *V2Add(), *V2Sub();
-extern Vector2 *V2Lerp(), *V2Combine(), *V2Mul(), *V2MakePerpendicular();
-extern Vector2 *V2New(), *V2Duplicate();
-extern Point2 *V2MulPointByMatrix();
-extern Matrix3 *V2MatMul();
-
-extern double V3SquaredLength(), V3Length();
-extern double V3Dot(), V3DistanceBetween2Points();
-extern Vector3 *V3Normalize(), *V3Scale(), *V3Add(), *V3Sub();
-extern Vector3 *V3Lerp(), *V3Combine(), *V3Mul(), *V3Cross();
-extern Vector3 *V3New(), *V3Duplicate();
-extern Point3 *V3MulPointByMatrix();
-extern Matrix4 *V3MatMul();
-
-extern double RegulaFalsi(), NewtonRaphson(), findroot();
-
-#endif
diff --git a/Utilities/IpSegmentation/empty.xpm b/Utilities/IpSegmentation/empty.xpm
deleted file mode 100644
index ba49885034..0000000000
--- a/Utilities/IpSegmentation/empty.xpm
+++ /dev/null
@@ -1,89 +0,0 @@
-/* XPM */
-static const char *empty_xpm [] = {
-/* width height num_colors chars_per_pixel */
-" 80 80 2 1",
-/* colors */
-". c #000000",
-"# c #c4c4c4",
-/* pixels */
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"..............................................#.................................",
-".....................##...##..#.##.##..####..######..##.##......................",
-"...................##....#..#..#..#..#..#..#..#...#..#....##....................",
-".................##......####..#..#..#..#..#..#...#.##......##..................",
-"...................##....#.....#..#..#..#..#..#...#.#.....##....................",
-".....................##..##..#.#..#..#..#..#..#....##...##......................",
-"..........................###.###.##.##.###....##..#............................",
-"........................................#..........#............................",
-"........................................#.........#.............................",
-".......................................###.......##.............................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................",
-"................................................................................"
-};
diff --git a/Utilities/IpSegmentation/files.cmake b/Utilities/IpSegmentation/files.cmake
deleted file mode 100644
index 6452f6aec4..0000000000
--- a/Utilities/IpSegmentation/files.cmake
+++ /dev/null
@@ -1,19 +0,0 @@
-set(H_FILES
-
-)
-
-set(CPP_FILES
- ipSegmentationError.c
- ipSegmentationNew.c
- ipSegmentationFree.c
- ipSegmentationClear.c
- ipSegmentationCombineRegion.c
- ipSegmentationRegionGrower.cpp
- ipSegmentationContourExtraction.cpp
- ipSegmentationReplaceRegion.cpp
- ipSegmentationRegionCutter.cpp
- ipSegmentationGrowerHistory.cpp
- ipSegmentationContourUtils.cpp
- ipSegmentationInterpolate.c
- ipSegmentationUndo.c
-)
diff --git a/Utilities/IpSegmentation/ipSegmentation.h b/Utilities/IpSegmentation/ipSegmentation.h
deleted file mode 100644
index 092ba39252..0000000000
--- a/Utilities/IpSegmentation/ipSegmentation.h
+++ /dev/null
@@ -1,209 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-
-/*! \mainpage
-
- \author Tobias Kunert, Thomas Boettger, Tobias Heimann
- \date October 2002
-
- The ipMITKSegmentation library manages the results of the
- segmentation process. It provides basic capabilities
- to modify segmentation images. It includes also an
- undo mechanism which allows to trace back the changes.
-
-*/
-
-#ifndef IPSEGMENTATION_H
-#define IPSEGMENTATION_H
-
-#include <mitkIpPic.h>
-
-#if defined(__cplusplus) || defined(c_plusplus)
-extern "C"
-{
-#endif
-
- /*!
- \brief Defines the data type of the segmentation images.
- */
-#define ipMITKSegmentationTYPE mitkIpUInt1_t
-#define ipMITKSegmentationTYPE_ID mitkIpPicUInt
-#define ipMITKSegmentationBPE 8
-#define tagSEGMENTATION_EMPTY "SEGMENTATION_EMPTY"
-
- /*!
- \brief Initializes the segmentation.
- @param image the original image which will be segmented
- @return the segmentation.
- */
- extern mitkIpPicDescriptor* ipMITKSegmentationNew (mitkIpPicDescriptor* image);
-
- /*!
- \brief Destroys the segmentation.
- @param segmentation the segmentation.
- */
- extern void ipMITKSegmentationFree (mitkIpPicDescriptor* segmentation);
-
- /*!
- \brief Clears the segmentation data, i.e. the pixels will
- be set to zero.
- @param segmentation the segmentation
- */
- extern void ipMITKSegmentationClear (mitkIpPicDescriptor* segmentation);
-
- /*!
- \brief Interpolates the shape of segmentations.
- @param pic1,pic2 the images of the segmentation
- @param ratio the ratio of the images, the ratios 0.0 and 1.0 will
- produce pic1 and pic2, accordingly.
- */
- extern mitkIpPicDescriptor* ipMITKSegmentationInterpolate (mitkIpPicDescriptor* pic1, mitkIpPicDescriptor* pic2, const mitkIpFloat4_t ratio);
-
- /*!
- \brief The type of logical operation.
- */
- enum LogicalOp {
- IPSEGMENTATION_OP /*! copy of input image */,
- IPSEGMENTATION_AND /*! logical and operator */,
- IPSEGMENTATION_OR /*! the or operator */,
- IPSEGMENTATION_XOR /*! the exclusive-or operator */
- };
-
- /*!
- \brief Combines the region with the segmentation image.
- @param points the array of points, each point is represented
- by a 2-D vector (x, y)
- @param segmentation the segmentation.
- @param num the number of points
- @param mask the image which restricts the operation to a particular region
- @param operation the operation which will be performed (see above)
- @param value the operand value of the operation
- \note The last point is automatically connected with the first one.
- */
- extern void ipMITKSegmentationCombineRegion (mitkIpPicDescriptor* segmentation, const mitkIpInt4_t* const points, const int num, mitkIpPicDescriptor* mask, const int operation, int value);
-
- /*!
- \brief Enables the undo operation for the specified segmentation.
- @param segmentation the segmentation
- @param level the number of undo levels
- */
- extern void ipMITKSegmentationUndoEnable (mitkIpPicDescriptor* segmentation, const mitkIpUInt1_t level);
-
- /*!
- \brief Disables the undo operation for the specified segmentation.
- The available data will be discarded.
- @param segmentation the segmentation
- */
- extern void ipMITKSegmentationUndoDisable (mitkIpPicDescriptor* segmentation);
-
- /*!
- \brief Checks if the undo operation is enabled.
- @param segmentation the segmentation
- */
- extern mitkIpBool_t ipMITKSegmentationUndoIsEnabled (mitkIpPicDescriptor* segmentation);
-
- /*!
- \brief Checks if any data for undo is available.
- pending?
- */
- extern mitkIpBool_t ipMITKSegmentationUndoAvailable (mitkIpPicDescriptor* segmentation);
-
- /*!
- \brief Save the segmentation image before it is changed.
- @param segmentation the segmentation
- */
- extern void ipMITKSegmentationUndoSave (mitkIpPicDescriptor* segmentation);
-
- /*!
- \brief Steps to the previous undo level. The data which has been saved
- before the last modifications will be restored.
- */
- extern void ipMITKSegmentationUndo (mitkIpPicDescriptor* segmentation);
-
-#if defined(__cplusplus) || defined(c_plusplus)
-}
-#endif
-
-/*!
- Starts a 4 neighbourhood region growing at startOfs (y*picWidth+x) of the 2D image src.
- If relativeBounds is true, the region grows in [base-lowerBound, base+upperBound], in which base is the average
- color of the 9 pixels around startOfs. If relativeBounds is false, the region grows in [lowerBound, upperBound].
- If maxIterations is > 0, the growing process is stopped after maxIterations.
- If segBuffer is 0, new memory for the segmented image is allocated and returned, else the segBuffer is used
- to store the result (has to be an 8-bit datatype, e.g. mitkIpUInt1_t).
- histBuffer must be 0 or a pointer to a 16-bit mitkIpPicUInt image of the same size as src. In case of the latter,
- history data is written to that buffer: the seed pixel gets a 1, all direct neighbours 2 etc. The buffer is
- not cleared in this function and can thus hold history data of several growing processes in different areas.
- */
-extern mitkIpPicDescriptor* ipMITKSegmentationGrowRegion4N( mitkIpPicDescriptor *src, int startOfs, bool relativeBounds, float lowerBound, float upperBound, int maxIterations, mitkIpPicDescriptor *segBuffer, mitkIpPicDescriptor *histBuffer=nullptr );
-
-/*!
- Same as the other ipMITKSegmentationGrowRegion4N with two additional return values:
- contourOfs holds the lowest point of the resulting region and is thus guaranteed to be part of the contour
- Take care: if the region could not grow at all (e.g. with fixed borders) contourOfs will be -1 !!!
- startCol holds the color that was used as base if relativeBounds is true
- */
-extern mitkIpPicDescriptor* ipMITKSegmentationGrowRegion4N( mitkIpPicDescriptor *src, int startOfs, bool relativeBounds, float lowerBound, float upperBound, int maxIterations, mitkIpPicDescriptor *segBuffer, int &contourOfs, float &startCol, mitkIpPicDescriptor *histBuffer=nullptr );
-
-/*!
- Replaces the 4 neighbourhood region around startOfs (y*picWidth+x) of the 2D segmented image seg with newValue.
- Seg has to be an 8-bit datatype, e.g. mitkIpUInt1_t.
- Returns the number of replaced pixels. If newValue is the same as the old value, the function returns 0.
- */
-extern int ipMITKSegmentationReplaceRegion4N( mitkIpPicDescriptor *seg, int startOfs, mitkIpInt1_t newValue );
-
-/*!
- Same as above, but for the 8 neighbourhood contour.
- */
-extern float* ipMITKSegmentationGetContour8N( const mitkIpPicDescriptor *seg, int startOfs, int &numPoints, int &sizeBuffer, float *pointBuffer=nullptr );
-
-
-typedef struct {
- float *traceline; // x/y points describing the calculated path - memory has to be freed!
- bool *onGradient; // flags for each point if path was calculated based on gradient (true) or on max distance (false) - memory has to be freed!
- int numPoints; // number of points in the path
- int absMin; // indexes the point at the narrowest part of the path
- bool cutIt; // true if a leak has been found
- float cutCoords[4]; // x1,y1,x2,y2 of the two contour points where the leak can be cut
- float *deleteCurve; // x/y points of the closed contour describing the leak region
- int deleteSize; // number of points in this contour
-} tCutResult;
-
-/*!
- Calculates a path from ofs to the origin of the growing process, when possible on the skeleton of the
- segmented area. The narrowest part of this path is used to create two cut points that are part of the contour
- and can later be used to split the segmentation. This funtion is useful for detecting and removing leaks in
- region growing.
- */
-extern tCutResult ipMITKSegmentationGetCutPoints( mitkIpPicDescriptor *seg, mitkIpPicDescriptor *history, int ofs );
-
-/*!
- Creates a grower history (i.e. the order in which a region grower would have segmented the area) of the given
- segmentation, origin of the grower is startOfs. histBuffer must be a 16bit unsigned int or 0, in the latter
- case the pic is created.
- */
-extern mitkIpPicDescriptor* ipMITKSegmentationCreateGrowerHistory( mitkIpPicDescriptor *seg, int startOfs, mitkIpPicDescriptor *histBuffer );
-
-/*!
- Splits a contour in two parts. contour is the original contour, cutCoords a pointer to an x1-y1-x2-y2 array that
- specifies the two points where the contour should be cut (these cutpoints must be points of the original contour!).
- part1 and part2 have to be float arrays of a sufficient size to store the two parts. The sizes of the two parts
- are returned in size1 and size2.
- */
-extern void ipMITKSegmentationSplitContour( float *contour, int sizeContour, float *cutCoords, float *part1, int &size1, float *part2, int &size2 );
-
-/*!
- Returns true if the specified point lies insede the contour, else returns false.
- */
-extern bool ipMITKSegmentationIsInsideContour( float *contour, int sizeContour, float x, float y );
-
-#endif
diff --git a/Utilities/IpSegmentation/ipSegmentationClear.c b/Utilities/IpSegmentation/ipSegmentationClear.c
deleted file mode 100644
index 663164c73b..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationClear.c
+++ /dev/null
@@ -1,76 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-#include <assert.h>
-#include "empty.xpm"
-#include "ipSegmentationP.h"
-
-void
-ipMITKSegmentationClear (mitkIpPicDescriptor* segmentation)
-{
- ipMITKSegmentationTYPE *cur, *last;
- mitkIpPicTSV_t* tag;
- const char *src;
- mitkIpUInt1_t *dst;
- mitkIpUInt4_t i, j;
-
- assert (segmentation);
- if (ipMITKSegmentationUndoIsEnabled (segmentation)) {
- ipMITKSegmentationUndoSave (segmentation);
- }
-
- /* clear the image data */
-
- cur = (ipMITKSegmentationTYPE *) segmentation->data;
- last = cur + _mitkIpPicElements (segmentation);
- while (cur < last) {
- *cur++ = 0;
- }
-
- /* create an 'empty' tag */
-
- tag = mitkIpPicQueryTag (segmentation, tagSEGMENTATION_EMPTY);
- if (!tag) {
- tag = (mitkIpPicTSV_t *) malloc (sizeof (mitkIpPicTSV_t));
- strcpy (tag->tag, tagSEGMENTATION_EMPTY);
- tag->type = mitkIpPicBool;
- tag->bpe = sizeof (mitkIpBool_t) / 8;
- tag->dim = 1;
- tag->n[0] = 1;
- tag->value = malloc (sizeof (mitkIpBool_t));
- *((mitkIpBool_t *) tag->value) = mitkIpTrue;
- mitkIpPicAddTag (segmentation, tag);
- }
-
- /* create an `empty` icon */
-
- tag = mitkIpPicQueryTag (segmentation, "ICON80x80");
- if (!tag) {
- tag = (mitkIpPicTSV_t *) malloc (sizeof (mitkIpPicTSV_t));
- tag->type = mitkIpPicUInt;
- tag->bpe = 8;
- tag->dim = 2;
- tag->n[0] = 80;
- tag->n[1] = 80;
- tag->value = malloc (tag->n[0] * tag->n[1] * sizeof (mitkIpUInt1_t));
- strcpy (tag->tag, "ICON80x80");
- mitkIpPicAddTag (segmentation, tag);
- }
- dst = (mitkIpUInt1_t *) tag->value;
- for (i = 0; i < 80; i++) {
- src = empty_xpm [3+i];
- for (j = 0; j < 80; j++) {
- *dst = (*src == '.' ? 0 : 196);
- src++;
- dst++;
- }
- }
-}
diff --git a/Utilities/IpSegmentation/ipSegmentationCombineRegion.c b/Utilities/IpSegmentation/ipSegmentationCombineRegion.c
deleted file mode 100644
index 439358f285..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationCombineRegion.c
+++ /dev/null
@@ -1,258 +0,0 @@
-/*
- * This code is in part (the CONCAVE macro) a minimal variation
- * of the code from the Graphics Gems book series.
- *
- * The method ipMITKSegmentationCombineRegion is by Tobias Kunert, DKFZ
- *
- * For information on the Graphics Gems books and more of
- * the source code you can visit http://tog.acm.org/GraphicsGems/
- *
- * The following note on license is taken from the mentions website:
- *
- * EULA: The Graphics Gems code is copyright-protected.
- * In other words, you cannot claim the text of the code
- * as your own and resell it. Using the code is permitted
- * in any program, product, or library, non-commercial or
- * commercial. Giving credit is not required, though is
- * a nice gesture. The code comes as-is, and if there are
- * any flaws or problems with any Gems code, nobody involved
- * with Gems - authors, editors, publishers, or webmasters
- * - are to be held responsible. Basically, don't be a jerk,
- * and remember that anything free comes with no guarantee.
- *
-*/
-
-#include <assert.h>
-#include <math.h>
-#include <mitkIpFunc.h>
-#include "GraphicsGems.h"
-#include "ipSegmentationP.h"
-
-// changed "for (x=XL; x < XR ; x++)" to "for (x=XL; x <= XR ; x++)" -> correct segmentation results
-#define DRAWPROC(TYPE, PIC, MSK, XL, XR, Y, VALUE, CMD) \
-{ \
- int x; \
- for (x=XL; x <= XR ; x++) \
- MASK (TYPE, PIC, MSK, VALUE, x, Y, CMD) \
-}
-
-/*
- * Concave Polygon Scan Conversion
- * by Paul Heckbert
- * from "Graphics Gems", Academic Press, 1990
- */
-
-/*
- * concave: scan convert nvert-sided concave non-simple polygon with vertices at
- * (point[i].x, point[i].y) for i in [0..nvert-1] within the window win by
- * calling spanproc for each visible span of pixels.
- * Polygon can be clockwise or counterclockwise.
- * Algorithm does uniform point sampling at pixel centers.
- * Inside-outside test done by Jordan's rule: a point is considered inside if
- * an emanating ray intersects the polygon an odd number of times.
- * drawproc should fill in pixels from xl to xr inclusive on scanline y,
- * e.g:
- * drawproc(y, xl, xr)
- * int y, xl, xr;
- * {
- * int x;
- * for (x=xl; x<=xr; x++)
- * pixel_write(x, y, pixelvalue);
- * }
- *
- * Paul Heckbert 30 June 81, 18 Dec 89
- */
-
-
-#define ALLOC(ptr, type, n) ASSERT(ptr = (type *)malloc((n)*sizeof(type)))
-
-typedef struct { /* window: a discrete 2-D rectangle */
- int x0, y0; /* xmin and ymin */
- int x1, y1; /* xmax and ymax (inclusive) */
-} Window;
-
-typedef struct { /* a polygon edge */
- double x; /* x coordinate of edge's intersection with current scanline */
- double dx; /* change in x with respect to y */
- int i; /* edge number: edge i goes from pt[i] to pt[i+1] */
-} Edge;
-
-static int n; /* number of vertices */
-static Point2 *pt; /* vertices */
-
-static int nact; /* number of active edges */
-static Edge *active; /* active edge list:edges crossing scanline y */
-
-int compare_ind(const void* /*u*/, const void* /*v*/), \
- compare_active(const void* /*u*/, const void* /*v*/);
-
-#define CONCAVE(TYPE, PIC, MSK, POINT, NVERT, WINDOW, VALUE, CMD) \
-{ \
- \
- int k, y0, y1, y, i, j, xl, xr; \
- int *ind; /* list of vertex indices, sorted by pt[ind[j]].y */ \
- \
- n = (int)NVERT; \
- pt = POINT; \
- if (n<=0) return; \
- ALLOC(ind, int, n); \
- ALLOC(active, Edge, n); \
- \
- /* create y-sorted array of indices ind[k] into vertex list */ \
- for (k=0; k<n; k++) \
- ind[k] = k; \
- qsort(ind, n, sizeof ind[0], compare_ind); /* sort ind by pt[ind[k]].y */ \
- \
- nact = 0; /* start with empty active list */ \
- k = 0; /* ind[k] is next vertex to process */ \
- y0 = MAX(win->y0, ceil(pt[ind[0]].y-.5)); /* ymin of polygon */ \
- y1 = MIN(win->y1, floor(pt[ind[n-1]].y-.5)); /* ymax of polygon */ \
- \
- for (y=y0; y<=y1; y++) { /* step through scanlines */ \
- /* scanline y is at y+.5 in continuous coordinates */ \
- /* check vertices between previous scanline and current one, if any */ \
- for (; k<n && pt[ind[k]].y<=y+.5; k++) { \
- /* to simplify, if pt.y=y+.5, pretend it's above */ \
- /* invariant: y-.5 < pt[i].y <= y+.5 */ \
- i = ind[k]; \
- /* \
- * insert or delete edges before and after vertex i (i-1 to i, \
- * and i to i+1) from active list if they cross scanline y \
- */ \
- j = i>0 ? i-1 : n-1; /* vertex previous to i */ \
- if (pt[j].y <= y-.5) /* old edge, remove from active list */ \
- cdelete(j); \
- else if (pt[j].y > y+.5) /* new edge, add to active list */ \
- cinsert(j, y); \
- j = i<n-1 ? i+1 : 0; /* vertex next after i */ \
- if (pt[j].y <= y-.5) /* old edge, remove from active list */ \
- cdelete(i); \
- else if (pt[j].y > y+.5) /* new edge, add to active list */ \
- cinsert(i, y); \
- } \
- \
- /* sort active edge list by active[j].x */ \
- qsort(active, nact, sizeof active[0], compare_active); \
- \
- /* draw horizontal segments for scanline y */ \
- for (j=0; j<nact; j+=2) { /* draw horizontal segments */ \
- /* span 'tween j & j+1 is inside, span tween j+1 & j+2 is outside */ \
- xl = ceil(active[j].x-.5); /* left end of span */ \
- if (xl<win->x0) xl = win->x0; \
- xr = floor(active[j+1].x-.5); /* right end of span */ \
- if (xr>win->x1) xr = win->x1; \
- if (xl<=xr) \
- DRAWPROC(TYPE, PIC, MSK, xl, xr, y, VALUE, CMD);/* draw pixels in span */ \
- active[j].x += active[j].dx; /* increment edge coords */ \
- active[j+1].x += active[j+1].dx; \
- } \
- } \
-} \
-
-static void cdelete(i) /* remove edge i from active list */
-int i;
-{
- int j;
-
- for (j=0; j<nact && active[j].i!=i; j++);
- if (j>=nact) return; /* edge not in active list; happens at win->y0*/
- nact--;
- memmove( &active[j], &active[j+1], (nact-j)*sizeof active[0]);
-}
-
-static void cinsert(i, y) /* append edge i to end of active list */
-int i, y;
-{
- int j;
- double dx;
- Point2 *p, *q;
-
- j = i<n-1 ? i+1 : 0;
- if (pt[i].y < pt[j].y) {p = &pt[i]; q = &pt[j];}
- else {p = &pt[j]; q = &pt[i];}
- /* initialize x position at intersection of edge with scanline y */
- active[nact].dx = dx = (q->x-p->x)/(q->y-p->y);
- active[nact].x = dx*(y+.5-p->y)+p->x;
- active[nact].i = i;
- nact++;
-}
-
-/* comparison routines for qsort */
-int compare_ind(arg1, arg2) const void *arg1, *arg2;
-{
- int* u = (int*)arg1;
- int* v = (int*)arg2;
- return pt[*u].y <= pt[*v].y ? -1 : 1;
-}
-
-int compare_active(arg1, arg2) const void *arg1, *arg2;
-{
- Edge* u = (Edge*)arg1;
- Edge* v = (Edge*)arg2;
- return u->x <= v->x ? -1 : 1;
-}
-
-
-void ipMITKSegmentationCombineRegion (mitkIpPicDescriptor* segmentation, const mitkIpInt4_t* const points, const int num, mitkIpPicDescriptor* mask, const int operation, int value)
-{
- int idx;
- Point2* pl;
- Window *win;
- mitkIpPicTSV_t* tag;
-
- assert (segmentation);
- if (ipMITKSegmentationUndoIsEnabled (segmentation)) {
- ipMITKSegmentationUndoSave (segmentation);
- }
- tag = mitkIpPicQueryTag (segmentation, tagSEGMENTATION_EMPTY);
- tag = mitkIpPicDelTag (segmentation, tagSEGMENTATION_EMPTY);
- if (tag) {
- mitkIpPicFreeTag (tag);
- }
-
- win = (Window *) malloc (sizeof (Window));
- if (!win) {
- ipMITKSegmentationError (ipMITKSegmentationOUT_OF_MEMORY);
- }
- win->x0 = 0;
- win->y0 = 0;
- win->x1 = (int) segmentation->n[0] - 1;
- win->y1 = (int) segmentation->n[1] - 1;
-
- pl = (Point2 *) malloc (num * sizeof (Point2));
- if (!pl) {
- ipMITKSegmentationError (ipMITKSegmentationOUT_OF_MEMORY);
- }
-
- for (idx = 0; idx < num; idx++)
- {
- pl[idx].x = points[2*idx];
- pl[idx].y = points[2*idx+1];
- }
-
- switch (operation) {
-
- case IPSEGMENTATION_OP:
- //mitkIpPicFORALL_6(CONCAVE, segmentation, mask, pl, num, win, value, OP ) ;
- CONCAVE(ipMITKSegmentationTYPE, segmentation, mask, pl, num, win, value, OP);
- break;
-
- case IPSEGMENTATION_AND:
- //mitkIpPicFORALL_6(CONCAVE, segmentation, mask, pl, num, win, value, AND ) ;
- CONCAVE(ipMITKSegmentationTYPE, segmentation, mask, pl, num, win, value, AND);
- break;
-
- case IPSEGMENTATION_OR:
- //mitkIpPicFORALL_6(CONCAVE, segmentation, mask, pl, num, win, value, OR ) ;
- CONCAVE(ipMITKSegmentationTYPE, segmentation, mask, pl, num, win, value, OR);
- break;
-
- case IPSEGMENTATION_XOR:
- //mitkIpPicFORALL_6(CONCAVE, segmentation, mask, pl, num, win, value, XOR ) ;
- CONCAVE(ipMITKSegmentationTYPE, segmentation, mask, pl, num, win, value, XOR);
- break;
-
- default:
- assert (0); // never get here!
- }
-}
diff --git a/Utilities/IpSegmentation/ipSegmentationContourExtraction.cpp b/Utilities/IpSegmentation/ipSegmentationContourExtraction.cpp
deleted file mode 100755
index c3442d29bd..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationContourExtraction.cpp
+++ /dev/null
@@ -1,194 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-
-#include <mitkIpPicTypeMultiplex.h>
-#include "ipSegmentation.h"
-
-
-// only make macros available in local scope:
-namespace {
-
-// returns true if segmentation pixel at ofs is set, includes check for border pixels, i.e. border pixels do not result in returning true
-#define SEGSET(ofs) ( \
-((ofs)>=0 && (ofs)<maxOfs) && \
-( *(((PicType*)seg->data) + (ofs)) != 0 ) && \
-( (ofs)%line != 0 || (pos+1)%line != 0 ) && \
-( (ofs+1)%line != 0 || (pos)%line != 0 ) \
-)
-
-
-// appends a point to result, sets finished to true if this point is the same as the first one
-// allocates new momory if necessary
-#define ADD_CONTOUR_POINT \
-result[numPts*2] = xPos+xCorner[dir]; \
-result[numPts*2+1] = yPos+yCorner[dir]; \
-if (result[numPts*2]==result[0] && result[numPts*2+1]==result[1] && numPts>0) finished = true; \
-numPts++; \
-if (numPts==resSize) { \
- resSize+=16+resSize/2; \
- result = (float*)realloc( result, resSize*2*sizeof(float) ); \
- if (!result) finished = true; \
-}
-
-}
-
-template<typename PicType>
-float* tmGetContour4N( const mitkIpPicDescriptor *seg, int startOfs, int &numPts, int &resSize, float *result )
-// returns the number of contour points (xy-pairs) in result
-// optimized macros: DON'T TOUCH THE CODE (removed smiley, this is not funny but cruel for any maintainer!)
-{
- numPts = 0;
- int line = seg->n[0];
- int maxOfs = seg->n[0] * seg->n[1];
-
- int straight[4] = { 1, -line, -1, line };
- int right[4] = { line, 1, -line, -1 };
- float xMod[4] = { 1.0, 0.0, -1.0, 0.0 };
- float yMod[4] = { 0.0, -1.0, 0.0, 1.0 };
- float xCorner[4] = { 1.0, 1.0, 0.0, 0.0 };
- float yCorner[4] = { 1.0, 0.0, 0.0, 1.0 };
-
- int dir = 0;
- int pos = startOfs;
- float xPos = (float)(pos % line);
- float yPos = (float)(pos / line);
-
- while ( dir<4 && SEGSET( pos+right[dir] ) ) dir++;
- if (dir==4) return result; // no contour pixel
-
- bool finished = false;
- if (result==nullptr) {
- resSize = 2048;
- result = (float*)malloc( resSize*2*sizeof(float) );
- }
-
- do {
- if ( SEGSET( pos+right[dir] ) ) {
- // modify direction (turn right):
- dir = (dir-1) & 3;
- // modify position:
- pos += straight[dir];
- xPos += xMod[dir];
- yPos += yMod[dir];
- }
- else if ( SEGSET( pos+straight[dir] ) ) {
- ADD_CONTOUR_POINT
- // modify position:
- pos += straight[dir];
- xPos += xMod[dir];
- yPos += yMod[dir];
- }
- else {
- ADD_CONTOUR_POINT
- // modify direction (turn left):
- dir = (dir+1) & 3;
- }
- } while (!finished);
- return result;
-}
-
-
-float* ipMITKSegmentationGetContour4N( const mitkIpPicDescriptor *seg, int startOfs, int &numPoints, int &sizeBuffer, float *pointBuffer )
-{
- float *newBuffer = nullptr;
- mitkIpPicTypeMultiplexR4( tmGetContour4N, seg, newBuffer, startOfs, numPoints, sizeBuffer, pointBuffer );
- return newBuffer;
-}
-
-
-template<typename PicType>
-float* tmGetContour8N( const mitkIpPicDescriptor *seg, int startOfs, int &numPts, int &resSize, float *result )
-// returns the number of contour points (xy-pairs) in result
-// optimized macros: DON'T TOUCH THE CODE ;-)
-{
- numPts = 0;
- int line = seg->n[0]; // width of segmentation in pixels
- int maxOfs = seg->n[0] * seg->n[1]; // memory offset of pixel just beyond bottom-right-most pixel of segmentation (not a valid offset)
-
- int straight[4] = { 1, -line, -1, line }; // right, top, left, down (memory offsets)
- int right[4] = { line, 1, -line, -1 }; // down, right, top, left
- float xMod[4] = { 1.0, 0.0, -1.0, 0.0 };
- float yMod[4] = { 0.0, -1.0, 0.0, 1.0 };
- float xCorner[4] = { 1.0, 1.0, 0.0, 0.0 };
- float yCorner[4] = { 1.0, 0.0, 0.0, 1.0 };
-
- int dir = 0;
- int pos = startOfs; // initial position, this is where the contour search starts
- float xPos = (float)(pos % line); // calculate x and y from the memory offset
- float yPos = (float)(pos / line);
-
- while ( dir<4 && SEGSET( pos+right[dir] ) ) dir++;
- if (dir==4) {
- // check diagonal pixels:
- dir = 0;
- while ( dir<4 && SEGSET( pos+right[dir]+straight[dir] ) ) dir++;
- if (dir==4) return result; // no contour pixel
- // chose next suitable neighbour:
- pos += straight[dir];
- xPos += xMod[dir];
- yPos += yMod[dir];
- }
-
- bool finished = false;
- if (result==nullptr) {
- resSize = 2048;
- result = (float*)malloc( resSize*2*sizeof(float) );
- }
-
- // here xPos,yPos are on some pixel next to a segmentation pixel. Where is "next to"? This is defined by the value of dir and the offsets in right[dir].
-
- // tries to complete the contour until a point is added that is identical to the first point
- do {
- if ( SEGSET( pos+right[dir] ) ) { // valgrind complaint: jump dependent on uninitialized value (from my current understanding this could only be some pixel value outside the image
- // modify direction (turn right): // this if will evaluate to true during the first iteration
- dir = (dir-1) & 3; // ok, some weird logic selects a new direction
- // modify position:
- pos += straight[dir]; // definitions of right and straight (plus xMod and yMod) lead to a counter-clockwise movement around the contour
- xPos += xMod[dir];
- yPos += yMod[dir];
- }
- else if ( SEGSET( pos+straight[dir] ) ) {
- ADD_CONTOUR_POINT
- // modify position:
- pos += straight[dir];
- xPos += xMod[dir];
- yPos += yMod[dir];
- }
- else if ( SEGSET( pos+right[dir]+straight[dir] ) ) { // valgrind complaint: jump dependent on uninitialized value
- ADD_CONTOUR_POINT
- // modify position:
- pos += straight[dir];
- xPos += xMod[dir];
- yPos += yMod[dir];
- // modify direction (turn right):
- dir = (dir-1) & 3;
- // modify position second time:
- pos += straight[dir];
- xPos += xMod[dir];
- yPos += yMod[dir];
- }
- else {
- ADD_CONTOUR_POINT
- // modify direction (turn left):
- dir = (dir+1) & 3;
- }
- } while (!finished);
- return result;
-}
-
-
-float* ipMITKSegmentationGetContour8N( const mitkIpPicDescriptor *seg, int startOfs, int &numPoints, int &sizeBuffer, float *pointBuffer )
-{
- float *newBuffer = nullptr;
- mitkIpPicTypeMultiplexR4( tmGetContour8N, seg, newBuffer, startOfs, numPoints, sizeBuffer, pointBuffer );
- return newBuffer;
-}
diff --git a/Utilities/IpSegmentation/ipSegmentationContourUtils.cpp b/Utilities/IpSegmentation/ipSegmentationContourUtils.cpp
deleted file mode 100755
index 22a5dc0563..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationContourUtils.cpp
+++ /dev/null
@@ -1,109 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-
-#include "ipSegmentation.h"
-
-
-/**
- * Input: one contour (start and end point identical). array of floats. [x1 y1 x2 y2 ...]
- * Output: two contours (start and end point not neccessarily identical)
- * cutCoords: two points that define the cut (must not [should not be] be identical)
- *
- * S.....O
- * . .
- * . .
- * . .
- * . ------C2 S: Start of contour (two times in the array)
- * . ------- . C1: cut point 1
- * C1------ . C2: cut point 2
- * . O
- * . ..
- * . ..
- * . ..
- * . ..
- * O
- */
-void ipMITKSegmentationSplitContour( float *contour, int sizeContour, float *cutCoords, float *part1, int &size1, float *part2, int &size2 )
-{
- int cut1, cut2, i=0;
- bool cutReached;
- size1 = 0;
- size2 = 0;
-
- do {
- part1[2*size1] = contour[2*i];
- part1[2*size1+1] = contour[2*i+1];
- i++;
- size1++;
- cutReached = ( (cutCoords[0]==contour[2*i] && cutCoords[1]==contour[2*i+1]) ||
- (cutCoords[2]==contour[2*i] && cutCoords[3]==contour[2*i+1]) );
- } while (!cutReached);
- cut1 = i;
- part1[2*size1] = contour[2*i];
- part1[2*size1+1] = contour[2*i+1];
- size1++;
-
- do {
- part2[2*size2] = contour[2*i];
- part2[2*size2+1] = contour[2*i+1];
- i++;
- size2++;
- cutReached = ( (cutCoords[0]==contour[2*i] && cutCoords[1]==contour[2*i+1]) ||
- (cutCoords[2]==contour[2*i] && cutCoords[3]==contour[2*i+1]) );
- } while (!cutReached);
- cut2 = i;
- part2[2*size2] = contour[2*i];
- part2[2*size2+1] = contour[2*i+1];
- size2++;
-
- do {
- part1[2*size1] = contour[2*i];
- part1[2*size1+1] = contour[2*i+1];
- i++;
- size1++;
- } while (i<sizeContour);
-}
-
-
-/*
- * This is taken from the FAQ of comp.graphics.algorithms
- *
- * http://www.exaflop.org/docs/cgafaq/cga2.html
- *
- * This FAQ references:
- *
- * Graphics Gems IV, Paul S. Heckbert (ed.), Academic Press 1994, ISBN 0-12-336155-9
- * Computational Geometry in C (2nd Ed.), Joseph O'Rourke, Cambridge University Press 1998, ISBN 0-521-64010-5
- * An Introduction to Ray Tracing, Andrew Glassner (ed.), Academic Press 1989, ISBN 0-12-286160-4
- *
-*/
-bool ipMITKSegmentationIsInsideContour( float *contour, int sizeContour, float x, float y )
-{
-
- int i, j;
- bool res = false;
- for ( i=0, j=sizeContour-1;
- i<sizeContour;
- j=i++)
- {
- if (
- ( ((contour[2*i+1]<=y) && (y<contour[2*j+1]))
- || ((contour[2*j+1]<=y) && (y<contour[2*i+1])) )
- &&
- ( x < (contour[2*j] - contour[2*i]) * (y - contour[2*i+1]) / (contour[2*j+1] - contour[2*i+1]) + contour[2*i])
- )
-
- res = !res;
- }
- return res;
-}
-
diff --git a/Utilities/IpSegmentation/ipSegmentationError.c b/Utilities/IpSegmentation/ipSegmentationError.c
deleted file mode 100644
index 759b0c10e1..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationError.c
+++ /dev/null
@@ -1,53 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-
-#include <stdio.h>
-#include "ipSegmentationP.h"
-
-static const char* messages [] = {
- "ok.",
- "sorry, out of memory.",
- "sorry, wrong data type of segmentation image.",
- "sorry, undo is disabled.",
- "sorry, PIC descriptor is null.",
- "sorry, unknown error occurred."
-};
-
-void
-ipMITKSegmentationError (int error)
-{
- switch (error) {
- case ipMITKSegmentationOK:
- case ipMITKSegmentationOUT_OF_MEMORY:
- case ipMITKSegmentationWRONG_TYPE:
- case ipMITKSegmentationUNDO_DISABLED:
- printf ("ipMITKSegmentation: %s\n", messages [error]);
- break;
- default:
- printf ("ipMITKSegmentation: %s\n", messages [ipMITKSegmentationUNKNOWN_ERROR]);
- break;
- }
- if (error > 0) {
- exit (-1);
- }
-}
-
-void
-ipMITKSegmentationCheckImage (mitkIpPicDescriptor* segmentation)
-{
- if ((segmentation->type != ipMITKSegmentationTYPE_ID) || (segmentation->bpe != ipMITKSegmentationBPE)) {
- ipMITKSegmentationError (ipMITKSegmentationWRONG_TYPE);
- }
- if (!segmentation->data) {
- ipMITKSegmentationError (ipMITKSegmentationUNKNOWN_ERROR);
- }
-}
diff --git a/Utilities/IpSegmentation/ipSegmentationError.h b/Utilities/IpSegmentation/ipSegmentationError.h
deleted file mode 100644
index 864218516f..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationError.h
+++ /dev/null
@@ -1,37 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-#ifndef IPSEGMENTATION_ERROR_H
-#define IPSEGMENTATION_ERROR_H
-
-enum {
- ipMITKSegmentationOK = 0 /*! No errors at all. */,
- ipMITKSegmentationOUT_OF_MEMORY /*! Not enough memory available. */,
- ipMITKSegmentationWRONG_TYPE /*! Segmentation image has a wrong type. */,
- ipMITKSegmentationUNDO_DISABLED /*! Undo cannot be performed. */,
- ipMITKSegmentationPIC_NULL /*! PIC descriptor is null. */,
- ipMITKSegmentationUNKNOWN_ERROR /*! Some unknown error occurred. */
-};
-
-/*!
-\brief Prints an error message and exits
-if an error has occurred.
-@param error error code
-*/
-void ipMITKSegmentationError (int error);
-
-/*!
-\brief Checks the segmentation image.
-@param segmentation the segmentation image.
-*/
-void ipMITKSegmentationCheck (mitkIpPicDescriptor* segmentation);
-
-#endif
diff --git a/Utilities/IpSegmentation/ipSegmentationFree.c b/Utilities/IpSegmentation/ipSegmentationFree.c
deleted file mode 100644
index 106d8562ff..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationFree.c
+++ /dev/null
@@ -1,22 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-
-#include <mitkIpPic.h>
-
-void ipMITKSegmentationFree (mitkIpPicDescriptor* segmentation)
-{
- if (!segmentation) return;
-
- mitkIpPicFree (segmentation);
-}
-
-
diff --git a/Utilities/IpSegmentation/ipSegmentationGrowerHistory.cpp b/Utilities/IpSegmentation/ipSegmentationGrowerHistory.cpp
deleted file mode 100755
index 577441d829..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationGrowerHistory.cpp
+++ /dev/null
@@ -1,121 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-
-#include <queue>
-#include "ipSegmentation.h"
-
-
-mitkIpPicDescriptor*
-ipMITKSegmentationCreateGrowerHistory( mitkIpPicDescriptor *seg, int startOfs, mitkIpPicDescriptor *histBuffer )
-{
- std::queue<int> ofsQueue;
-
- if (!seg) return nullptr;
- if (!histBuffer) {
- histBuffer = mitkIpPicCopyHeader( seg, histBuffer );
- histBuffer->type = mitkIpPicUInt;
- histBuffer->bpe = 16;
- mitkIpUInt4_t size = _mitkIpPicSize( histBuffer );
- histBuffer->data = malloc( size );
- memset( histBuffer->data, 0, size ); // clear buffer
- }
- else {
- // check if dimension of histBuffer is valid, if not: change it!
- if (histBuffer->n[0] != seg->n[0] || histBuffer->n[1] != seg->n[1]) {
- histBuffer->n[0] = seg->n[0];
- histBuffer->n[1] = seg->n[1];
- mitkIpUInt4_t size = _mitkIpPicSize( histBuffer );
- histBuffer->data = realloc( histBuffer->data, size );
- if (histBuffer->data == nullptr) return nullptr;
- memset( histBuffer->data, 0, size ); // clear buffer
- }
- }
-
- // create a clear buffer to check wether a point has already been visited
- // (seg cannot be modifier and histBuffer can contain any value)
- mitkIpPicDescriptor *flagBuffer = mitkIpPicCopyHeader( seg, nullptr );
- mitkIpUInt4_t size = _mitkIpPicSize( flagBuffer );
- flagBuffer->data = malloc( size );
- memset( flagBuffer->data, 0, size );
- *((mitkIpUInt1_t*)flagBuffer->data+startOfs) = 1; // flag pixel as visited
-
- int line = seg->n[0];
- int maxOfs = (int)(line * seg->n[1]);
- int testOfs;
- mitkIpUInt1_t segVal, flagVal;
- int iteration = 0;
- int currentWave = 1;
- int nextWave = 0;
-
- ofsQueue.push( startOfs );
-
- while (!ofsQueue.empty()) {
- int nextOfs = ofsQueue.front();
- ofsQueue.pop();
- currentWave--;
- *((mitkIpUInt2_t*)histBuffer->data+nextOfs) = (mitkIpUInt2_t)(iteration+1); // seed point should get history = 1
-
- // check right:
- testOfs = nextOfs+1;
- if (testOfs%line!=0) {
- segVal = *((mitkIpUInt1_t*)seg->data+testOfs);
- flagVal = *((mitkIpUInt1_t*)flagBuffer->data+testOfs);
- if ( segVal != 0 && flagVal == 0) {
- ofsQueue.push( testOfs );
- *((mitkIpUInt1_t*)flagBuffer->data+testOfs) = 1; // flag pixel as visited
- nextWave++;
- }
- }
- // check top:
- testOfs = nextOfs-line;
- if (testOfs > 0) {
- segVal = *((mitkIpUInt1_t*)seg->data+testOfs);
- flagVal = *((mitkIpUInt1_t*)flagBuffer->data+testOfs);
- if ( segVal != 0 && flagVal == 0) {
- ofsQueue.push( testOfs );
- *((mitkIpUInt1_t*)flagBuffer->data+testOfs) = 1; // flag pixel as visited
- nextWave++;
- }
- }
- // check left:
- testOfs = nextOfs-1;
- if (nextOfs%line!=0) {
- segVal = *((mitkIpUInt1_t*)seg->data+testOfs);
- flagVal = *((mitkIpUInt1_t*)flagBuffer->data+testOfs);
- if ( segVal != 0 && flagVal == 0) {
- ofsQueue.push( testOfs );
- *((mitkIpUInt1_t*)flagBuffer->data+testOfs) = 1; // flag pixel as visited
- nextWave++;
- }
- }
- // check bottom:
- testOfs = nextOfs+line;
- if (testOfs < maxOfs) {
- segVal = *((mitkIpUInt1_t*)seg->data+testOfs);
- flagVal = *((mitkIpUInt1_t*)flagBuffer->data+testOfs);
- if ( segVal != 0 && flagVal == 0) {
- ofsQueue.push( testOfs );
- *((mitkIpUInt1_t*)flagBuffer->data+testOfs) = 1; // flag pixel as visited
- nextWave++;
- }
- }
- // check for number of iterations:
- if (currentWave == 0) {
- currentWave = nextWave;
- nextWave = 0;
- iteration++;
- }
- }
-
- mitkIpPicFree( flagBuffer );
- return histBuffer;
-}
diff --git a/Utilities/IpSegmentation/ipSegmentationInterpolate.c b/Utilities/IpSegmentation/ipSegmentationInterpolate.c
deleted file mode 100644
index 8962636e76..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationInterpolate.c
+++ /dev/null
@@ -1,319 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-
-#include <assert.h>
-#include <math.h>
-#include <mitkIpFunc.h>
-#include "ipSegmentationP.h"
-
-/*!
-The algorithm implements the shape-based interpolation technique.
-Further detailed information can be found in:
-
-G.T. Herman, J. Zheng, C.A. Bucholtz: "Shape-based interpolation"
-IEEE Computer Graphics & Applications, pp. 69-79,May 1992
-*/
-
-#define MAX 2048
-
-extern float truncf (float x);
-static mitkIpPicDescriptor* setup (mitkIpPicDescriptor* pic_old);
-static mitkIpInt2_t distance (const mitkIpInt2_t* const old_distance, const mitkIpInt2_t* mask_dist, const mitkIpInt2_t* mask_offset, const mitkIpUInt4_t mask_elements);
-
-// DON'T ever touch this code again - rather rewrite it! Then use ITK or some other library!
-
-// Works ONLY with 2D images.
-mitkIpPicDescriptor*
-ipMITKSegmentationPadBy1Pixel (mitkIpPicDescriptor* pic_in)
-{
- //prepare the images
- mitkIpPicDescriptor* pic_out;
- ipMITKSegmentationTYPE* out_pixel_pointer;
- ipMITKSegmentationTYPE* in_pixel_pointer;
- unsigned int x, y;
-
- pic_out = mitkIpPicCopyHeader(pic_in, NULL);
- if (pic_out == NULL)
- {
- ipMITKSegmentationError (ipMITKSegmentationPIC_NULL);
- }
-
- if ((pic_out->type != ipMITKSegmentationTYPE_ID) || (pic_out->bpe != ipMITKSegmentationBPE))
- {
- ipMITKSegmentationError (ipMITKSegmentationWRONG_TYPE);
- }
-
- // pad by 1 pixel
- pic_out->n[0] += 4;
- pic_out->n[1] += 4;
-
- // allocate image data
- pic_out->data = malloc ( pic_out->n[0] * pic_out->n[1] * ((pic_out->bpe)/8) );
- // copy pixel data
- out_pixel_pointer = (ipMITKSegmentationTYPE*) (pic_out->data);
- in_pixel_pointer = (ipMITKSegmentationTYPE*) (pic_in->data);
-
- for (y = 0; y < pic_out->n[1]; ++y)
- for (x = 0; x < pic_out->n[0]; ++x)
- {
- if ( x < 2 || y < 2 || (x > pic_out->n[0]-3) || (y > pic_out->n[1]-3) ) // set border pixels to 0
- {
- *out_pixel_pointer = 0;
- }
- else
- {
- *out_pixel_pointer = *in_pixel_pointer;
- ++in_pixel_pointer;
- }
- ++out_pixel_pointer;
- }
-
- return pic_out;
-}
-
-// Works ONLY with 2D images.
-mitkIpPicDescriptor*
-ipMITKSegmentationShrinkBy1Pixel (mitkIpPicDescriptor* pic_in )
-{
- mitkIpPicDescriptor* pic_out;
- ipMITKSegmentationTYPE* out_pixel_pointer;
- ipMITKSegmentationTYPE* in_pixel_pointer;
- unsigned int x, y;
-
- //prepare the images
- pic_out = mitkIpPicCopyHeader(pic_in, NULL);
- if (pic_out == NULL) {
- ipMITKSegmentationError (ipMITKSegmentationPIC_NULL);
- }
-
- if ((pic_out->type != ipMITKSegmentationTYPE_ID) || (pic_out->bpe != ipMITKSegmentationBPE))
- {
- ipMITKSegmentationError (ipMITKSegmentationWRONG_TYPE);
- }
-
- // pad by 1 pixel
- pic_out->n[0] -= 4;
- pic_out->n[1] -= 4;
-
- // allocate image data
- pic_out->data = malloc ( pic_out->n[0] * pic_out->n[1] * (pic_out->bpe/8) );
-
- // copy pixel data
- out_pixel_pointer = pic_out->data;
- in_pixel_pointer = pic_in->data;
-
- for (y = 0; y < pic_in->n[1]; ++y)
- for (x = 0; x < pic_in->n[0]; ++x)
- {
- if ( x < 2 || y < 2 || (x > pic_in->n[0]-3) || (y > pic_in->n[1]-3) ) // ignore border pixels
- {
- }
- else
- {
- *out_pixel_pointer = *in_pixel_pointer;
- ++out_pixel_pointer;
- }
- ++in_pixel_pointer;
- }
-
- return pic_out;
-}
-
-mitkIpPicDescriptor*
-ipMITKSegmentationInterpolate (mitkIpPicDescriptor* pPic1, mitkIpPicDescriptor* pPic2, const mitkIpFloat4_t ratio)
-{
- mitkIpPicDescriptor *pic_out, *pic[2]; /* pointer to image data */
- mitkIpUInt4_t frame [_mitkIpPicNDIM]; /* pointer for definition of frame-size */
- mitkIpInt4_t x, y;
- mitkIpUInt4_t i; /* loop counters */
- mitkIpFloat4_t weight[] = {1.0f-ratio, ratio}; /* weights of the interpolants */
- mitkIpInt2_t mask_width = 1; /* mask width from center to border */
- mitkIpInt2_t mask_x[] = {0, -1, +1, 0, -1}; /* relativ position in x-axis of mask */
- mitkIpInt2_t mask_y[] = {0, 0, -1, -1, -1}; /* relativ position in y-axis of mask */
- mitkIpInt2_t mask_dist[] = {0, 10, 14, 10, 14};/* distance to central element */
- mitkIpInt2_t mask_offset [5]; /* relative start position in given image */
- mitkIpUInt4_t mask_elements = 5; /* elements in distance mask */
- mitkIpInt2_t first_x, first_y; /* first pixel for distance calculation in enlarged image version */
- mitkIpInt2_t last_x, last_y; /* last pixel for distance calculation in enlarged image version */
- mitkIpInt2_t *pixel[2]; /* pointer to the current pixels */
- ipMITKSegmentationTYPE* pixel_out;
- mitkIpPicDescriptor* returnImage;
-
- mitkIpPicDescriptor* pic1 = ipMITKSegmentationPadBy1Pixel( pPic1 );
- mitkIpPicDescriptor* pic2 = ipMITKSegmentationPadBy1Pixel( pPic2 );
-
- /* prepare the images */
- pic_out = mitkIpPicCopyHeader(pic1, NULL);
- if (pic_out == NULL) {
- ipMITKSegmentationError (ipMITKSegmentationPIC_NULL);
- }
- if ((pic_out->type != ipMITKSegmentationTYPE_ID) || (pic_out->bpe != ipMITKSegmentationBPE)) {
- ipMITKSegmentationError (ipMITKSegmentationWRONG_TYPE);
- }
- pic_out->data = malloc (_mitkIpPicSize (pic_out));
- for (i = 0; i < pic1->dim; i++) {
- frame [i] = 1;
- }
- pic[0] = setup (pic1);
- pic[1] = setup (pic2);
-
- /* apply the mask in both directions */
- for (i=0; i< mask_elements; i++) {
- mask_offset [i] = mask_x[i] + mask_y[i]*pic[0]->n[0];
- }
- first_x = mask_width;
- first_y = mask_width;
- last_x = pic[0]->n[0] - mask_width-1;
- last_y = pic[0]->n[1] - mask_width-1;
- /* top-left to bottom-right, borders are neglected */
- for (y = first_y; y <= last_y; y++) {
- pixel [0] = (mitkIpInt2_t *) pic [0]->data + (first_x + y * pic [0]->n [0]);
- pixel [1] = (mitkIpInt2_t *) pic [1]->data + (first_x + y * pic [1]->n [0]);
- for (x = first_x; x <= last_x; x++) {
- *(pixel [0])++ = distance (pixel [0], mask_dist, mask_offset, mask_elements);
- *(pixel [1])++ = distance (pixel [1], mask_dist, mask_offset, mask_elements);
- }
- }
- /* bottom-right to top-left, borders are neglected */
- for (i=0; i< mask_elements; i++) {
- mask_offset [i] = -mask_offset [i];
- }
- pixel_out = (ipMITKSegmentationTYPE *) pic_out->data + _mitkIpPicElements(pic_out) - 1;
- for (y = last_y; y >= first_y; y--) {
- pixel [0] = (mitkIpInt2_t *) pic [0]->data + (last_x + y * pic [0]->n [0]);
- pixel [1] = (mitkIpInt2_t *) pic [1]->data + (last_x + y * pic [1]->n [0]);
- for (x = last_x; x >= first_x; x--) {
- *(pixel [0]) = distance (pixel [0], mask_dist, mask_offset, mask_elements);
- *(pixel [1]) = distance (pixel [1], mask_dist, mask_offset, mask_elements);
- *pixel_out-- = (weight [0] * *(pixel [0]) + weight [1] * *(pixel[1]) > 0 ? 1 : 0);
- pixel[0]--;
- pixel[1]--;
- }
- }
- mitkIpPicFree(pic [0]);
- mitkIpPicFree(pic [1]);
-
- mitkIpPicFree(pic1);
- mitkIpPicFree(pic2);
-
- returnImage = ipMITKSegmentationShrinkBy1Pixel( pic_out );
-
- mitkIpPicFree(pic_out);
-
- return returnImage;
-}
-
-static mitkIpPicDescriptor*
-setup (mitkIpPicDescriptor* pic_old)
-{
- mitkIpPicDescriptor* pic;
- ipMITKSegmentationTYPE* src;
- mitkIpInt2_t* dst;
- mitkIpUInt4_t x, y;
-
- /* Allocate new image for distance transform */
-
- pic = mitkIpPicCopyHeader (pic_old, NULL);
- pic->type = mitkIpPicInt;
- pic->bpe = 16;
- pic->n[0] += 2;
- pic->n[1] += 2;
- pic->data = malloc (_mitkIpPicSize (pic));
-
- /* Set the frame to -1 */
-
- dst = (mitkIpInt2_t *) pic->data;
- for (x = 0; x < pic->n[0]; x++) {
- *dst++ = -MAX;
- }
- dst = (mitkIpInt2_t *) pic->data + _mitkIpPicElements (pic) - pic->n[0];
- for (x = 0; x < pic->n[0]; x++) {
- *dst++ = -MAX;
- }
- dst = (mitkIpInt2_t *) pic->data;
- for (y = 0; y < pic->n[1]; y++) {
- *dst = -MAX;
- dst += pic->n[0];
- }
- dst = (mitkIpInt2_t *) pic->data + (pic->n[0] - 1);
- for (y = 0; y < pic->n[1]; y++) {
- *dst = -MAX;
- dst += pic->n[0];
- }
-
- /* Set the image data to initial values */
-
- src = (ipMITKSegmentationTYPE *) pic_old->data;
- dst = (mitkIpInt2_t *) pic->data + (1 + pic->n[0]);
- for (y = 0; y < pic_old->n[1]; y++) {
- for (x = 0; x < pic_old->n[0]; x++) {
- *dst++ = (*src++ > 0 ? MAX : -MAX);
- }
- dst += 2;
- }
- dst = (mitkIpInt2_t *) pic->data + (1 + pic->n[0]);
- for (y = 0; y < pic_old->n[1]; y++) {
- for (x = 0; x < pic_old->n[0]; x++) {
- if ((dst[0] < dst[1]) || (dst[0] < dst[pic->n[0]])) {
- *dst = -5;
- } else if ((dst[0] > dst[1]) || (dst[0] > dst[pic->n[0]])) {
- *dst = 5;
- }
- dst++;
- }
- dst += 2;
- }
- dst -= 2;
- for (y = 0; y < pic_old->n[1]; y++) {
- for (x = 0; x < pic_old->n[0]; x++) {
- dst--;
- if (abs (dst[0]) > 5) {
- if ((dst[0] < dst[-1]) || (dst[0] < dst[-(int)(pic->n[0])])) {
- *dst = -5;
- } else if ((dst[0] > dst[-1]) || (dst[0] > dst[-(int)(pic->n[0])])) {
- *dst = 5;
- }
- }
- }
- }
- return pic;
-}
-
-static mitkIpInt2_t distance (const mitkIpInt2_t* const old_distance, const mitkIpInt2_t* mask_dist, const mitkIpInt2_t* mask_offset, const mitkIpUInt4_t mask_elements)
-{
- mitkIpInt2_t cur_distance, new_distance;
- mitkIpUInt4_t i;
-
- cur_distance = old_distance [0];
- if (abs (cur_distance) != 5) {
- if (cur_distance > 0) {
- for (i = 0; i < mask_elements; i++) {
- new_distance = *mask_dist + old_distance [*mask_offset];
- if (new_distance < cur_distance) {
- cur_distance = new_distance;
- }
- mask_dist++;
- mask_offset++;
- }
- } else if (cur_distance < 0) {
- for (i = 0; i < mask_elements; i++) {
- new_distance = old_distance [*mask_offset] - *mask_dist;
- if (new_distance > cur_distance) {
- cur_distance = new_distance;
- }
- mask_dist++;
- mask_offset++;
- }
- }
- }
- return cur_distance;
-}
diff --git a/Utilities/IpSegmentation/ipSegmentationNew.c b/Utilities/IpSegmentation/ipSegmentationNew.c
deleted file mode 100644
index 58f543fcc0..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationNew.c
+++ /dev/null
@@ -1,30 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-
-#include "ipSegmentationP.h"
-
-mitkIpPicDescriptor*
-ipMITKSegmentationNew (mitkIpPicDescriptor* image)
-{
- mitkIpPicDescriptor* s = NULL;
-
- if (image) {
- s = mitkIpPicNew ();
- s->type = ipMITKSegmentationTYPE_ID;
- s->bpe = ipMITKSegmentationBPE;
- s->dim = 2;
- s->n[0] = image->n[0];
- s->n[1] = image->n[1];
- s->data = malloc (_mitkIpPicSize (s));
- }
- return s;
-}
diff --git a/Utilities/IpSegmentation/ipSegmentationP.h b/Utilities/IpSegmentation/ipSegmentationP.h
deleted file mode 100644
index fdfc7128d2..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationP.h
+++ /dev/null
@@ -1,86 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-#ifndef IPSEGMENTATIONP_H
-#define IPSEGMENTATIONP_H
-
-#include <mitkIpPic.h>
-#include "ipSegmentationError.h"
-
-#ifndef IPSEGMENTATION_H
-
-#if defined(__cplusplus) || defined(c_plusplus)
-extern "C"
-{
-#endif
-
-#define ipMITKSegmentationTYPE mitkIpUInt1_t
-#define ipMITKSegmentationTYPE_ID mitkIpPicUInt
-#define ipMITKSegmentationBPE 8
-#define tagSEGMENTATION_EMPTY "SEGMENTATION_EMPTY"
-
-enum LogicalOp {
- IPSEGMENTATION_OP /*! copy of input image */,
- IPSEGMENTATION_AND /*! logical and operator */,
- IPSEGMENTATION_OR /*! the or operator */,
- IPSEGMENTATION_XOR /*! the exclusive-or operator */
-};
-
-extern void ipMITKSegmentationUndoSave (mitkIpPicDescriptor* segmentation);
-extern mitkIpBool_t ipMITKSegmentationUndoIsEnabled (mitkIpPicDescriptor* segmentation);
-
-#if defined(__cplusplus) || defined(c_plusplus)
-}
-#endif
-
-#endif /* IPSEGMTATION_H */
-
-#define AND(TYPE, PIC, VALUE, X, Y) \
-{ \
- TYPE* data = (TYPE*) (PIC)->data; \
- mitkIpUInt4_t width = (PIC)->n[0]; \
- int temp = (int) data [width * (mitkIpUInt4_t) Y + (mitkIpUInt4_t) X]; \
- temp &= (int) VALUE; \
- data [width * (mitkIpUInt4_t) Y + (mitkIpUInt4_t) X] = temp; \
-} \
-
-#define OR(TYPE, PIC, VALUE, X, Y) \
-{ \
- TYPE* data = (TYPE*) (PIC)->data; \
- mitkIpUInt4_t width = (PIC)->n[0]; \
- int temp = (int) data [width * (mitkIpUInt4_t) Y + (mitkIpUInt4_t) X]; \
- temp |= (int) VALUE; \
- data [width * (mitkIpUInt4_t) Y + (mitkIpUInt4_t) X] = temp; \
-} \
-
-#define XOR(TYPE, PIC, VALUE, X, Y) \
-{ \
- TYPE* data = (TYPE*) (PIC)->data; \
- mitkIpUInt4_t width = (PIC)->n[0]; \
- int temp = (int) data [width * (mitkIpUInt4_t) Y + (mitkIpUInt4_t) X]; \
- temp ^= (int) VALUE; \
- data [width * (mitkIpUInt4_t) Y + (mitkIpUInt4_t) X] = temp; \
-} \
-
-#define OP(TYPE, PIC, VALUE, X, Y) \
-{ \
- TYPE* data = (TYPE*) (PIC)->data; \
- mitkIpUInt4_t width = (PIC)->n[0]; \
- data [width * (mitkIpUInt4_t) Y + (mitkIpUInt4_t) X] = VALUE; \
-} \
-
-#define MASK(TYPE, PIC, MSK, VALUE, X, Y, CMD) \
-{ \
-if (!(MSK) || (((ipMITKSegmentationTYPE *)(MSK)->data)[(PIC)->n[0] * (mitkIpUInt4_t) (Y) + (mitkIpUInt4_t) (X)] > 0.0)) \
-CMD(TYPE, PIC, VALUE, X, Y) \
-}
-
-#endif
diff --git a/Utilities/IpSegmentation/ipSegmentationRegionCutter.cpp b/Utilities/IpSegmentation/ipSegmentationRegionCutter.cpp
deleted file mode 100755
index b9518ac97f..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationRegionCutter.cpp
+++ /dev/null
@@ -1,327 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-
-#include <mitkIpPicTypeMultiplex.h>
-#include <ANN/ANN.h>
-#include "ipSegmentation.h"
-
-
-
-static ANNkd_tree *annTree;
-static ANNpoint queryPt;
-static ANNidxArray nnIdx;
-static ANNdistArray dists;
-
-
-
-// find next pixel in ANN:
-#define QUERY_DIST(qOfs) \
- queryPt[0] = (float)(qOfs % line) + 0.5; \
- queryPt[1] = (float)(qOfs / line) + 0.5; \
- annTree->annkSearch( queryPt, 1, nnIdx, dists );
-
-
-#define PROCESS_PIXEL \
- histVal = *((mitkIpUInt2_t*)history->data+testOfs); \
- segVal = *((mitkIpUInt1_t*)seg->data+testOfs); \
- if ( segVal > 0 && histVal <= maxHist && testOfs!=oldOfs ) { \
- grad = ipMITKSegmentationGetDistGradient( testOfs, seg ); \
- QUERY_DIST(testOfs) \
- if (grad<minGrad) { \
- minGrad = grad; \
- gradCand = testOfs; \
- } \
- if (dists[0] > maxDist) { \
- maxDist = dists[0]; \
- candOfs = testOfs; \
- } \
- }
-
-
-float ipMITKSegmentationGetDistGradient( int ofs, mitkIpPicDescriptor *seg )
-{
- mitkIpUInt4_t unsignedOfs = ofs < 0 ? seg->n[0]*seg->n[1] - seg->n[0] : ofs;
- if (unsignedOfs < seg->n[0] || unsignedOfs >= seg->n[0]*seg->n[1] - seg->n[0]) // exclude image borders
- {
- return 1.0; // initialization value of minGrad (high gradient)
- }
- float x = (float)(ofs % seg->n[0]) + 0.5;
- float y = (float)(ofs / seg->n[0]) + 0.5;
- mitkIpUInt1_t segVal = 0; // initialize to stop valgrind's warning about "Conditional jump or move depends on uninitialised value(s)"
-
- queryPt[0] = x+1; queryPt[1] = y;
- annTree->annkSearch( queryPt, 1, nnIdx, dists );
- float d1 = sqrt( dists[0] ); // right dist
- segVal = *((mitkIpUInt1_t*)seg->data+ofs+1);
- if (!segVal) d1 = -10.0;
- queryPt[0] = x-1; queryPt[1] = y;
- annTree->annkSearch( queryPt, 1, nnIdx, dists );
- float d2 = sqrt( dists[0] ); // left dist
- segVal = *((mitkIpUInt1_t*)seg->data+ofs-1);
- if (!segVal) d2 = -10.0;
- queryPt[0] = x; queryPt[1] = y+1;
- annTree->annkSearch( queryPt, 1, nnIdx, dists );
- float d3 = sqrt( dists[0] ); // lower dist
- segVal = *((mitkIpUInt1_t*)seg->data+ofs+seg->n[0]);
- if (!segVal) d3 = -10.0;
- queryPt[0] = x; queryPt[1] = y-1;
- annTree->annkSearch( queryPt, 1, nnIdx, dists );
- float d4 = sqrt( dists[0] ); // upper dist
- segVal = *((mitkIpUInt1_t*)seg->data+ofs-seg->n[0]);
- if (!segVal) d4 = -10.0;
- float res = 0.5*(float)sqrt( (d1-d2)*(d1-d2) + (d3-d4)*(d3-d4) );
- return res;
-}
-
-
-
-tCutResult ipMITKSegmentationGetCutPoints( mitkIpPicDescriptor *seg, mitkIpPicDescriptor *history, int ofs )
-{
- bool debug(false);
- tCutResult res;
- int resContourSize = 5000;
- res.traceline = (float*)malloc( resContourSize*sizeof(float)*2 );
- res.onGradient = (bool*)malloc( resContourSize*sizeof(bool) );
- res.numPoints = 0;
- res.absMin = 0;
- res.cutIt = false;
- res.deleteCurve = nullptr;
-
- if (!history) return res; // no history!
- if (*((mitkIpUInt2_t*)history->data + ofs) == 0) return res; // ofs not inside known history
-
- // get one point on the contour:
- mitkIpUInt1_t *ptr = (mitkIpUInt1_t*)seg->data + ofs;
- int endLine = ((ofs / seg->n[0]) + 1) * seg->n[0] -1;
- int contourOfs = ofs;
- while (contourOfs!=endLine && *ptr!=0) {
- ptr++;
- contourOfs++;
- }
- if (*ptr == 0) contourOfs--; // get back on the contour!
-
- // extract the contour:
- int sizeContour, sizeBuffer;
- float *contour = ipMITKSegmentationGetContour8N( seg, contourOfs, sizeContour, sizeBuffer );
- // init ANN tree with contour points:
- queryPt = annAllocPt( 2 );
- ANNpointArray dataPts = annAllocPts( sizeContour, 2 );
- nnIdx = new ANNidx[10];
- dists = new ANNdist[10];
- for (int i=0; i<sizeContour; i++) {
- (dataPts[i])[0] = contour[2*i];
- (dataPts[i])[1] = contour[2*i+1];
- }
- annTree = new ANNkd_tree( dataPts, sizeContour, 2 );
-
- // trace to center:
- int line = history->n[0];
-
- int maxOfs = line * history->n[1];
- QUERY_DIST(ofs)
- float maxDist = dists[0];
- float minDist = 10000; // current minimum distance from border
- float oldDist = 0;
- int candOfs = ofs;
- int nextOfs = -1;
- int oldOfs, testOfs, gradCand=-1;
- float grad, minGrad;
- bool skelettonReached = false;
- mitkIpUInt2_t histVal;
- mitkIpUInt1_t segVal;
- mitkIpUInt2_t maxHist = 10000;
- if (maxHist==0 && debug) printf( "maxHist = 0!\n" );
- do {
- oldOfs = nextOfs;
- nextOfs = candOfs;
- // store point info:
- if (res.numPoints < resContourSize) {
- res.traceline[2*res.numPoints] = (float)(nextOfs % line) + 0.5;
- res.traceline[2*res.numPoints+1] = (float)(nextOfs / line) + 0.5;
- if (nextOfs==gradCand) res.onGradient[res.numPoints] = true;
- else res.onGradient[res.numPoints] = false;
-
- if (debug)
- {
- printf( "(%.f,%.f): H=%i, G=%i\n", res.traceline[2*res.numPoints],
- res.traceline[2*res.numPoints+1],
- *((mitkIpUInt2_t*)history->data+nextOfs),
- res.onGradient[res.numPoints] );
- }
- res.numPoints++;
-
- if (res.numPoints == resContourSize)
- {
- resContourSize *= 2; // explodes, but such contours must be very strange
- res.traceline = (float*)realloc( res.traceline, resContourSize*sizeof(float)*2 );
- res.onGradient = (bool*)realloc( res.onGradient, resContourSize*sizeof(bool) );
- if ((res.traceline == nullptr) || (res.onGradient == nullptr))
- {
- res.numPoints = 0;
- res.cutIt = false;
- return res;
- }
- }
- }
-
- maxHist = *((mitkIpUInt2_t*)history->data + nextOfs); // don't exceed this history!
- maxDist = 0; // clear maxDist
- minGrad = 1.0; // clear minGrad
-
- int traceSinceMin = res.numPoints - 1 - res.absMin;
- float weight = 20.0 / (20.0+traceSinceMin);
- if (weight < 0.5) weight = 0.5;
- QUERY_DIST(nextOfs)
- if (!skelettonReached && dists[0] < oldDist) {
- skelettonReached = true;
- if (debug) printf( "skeletton reached at %i, oldDist=%.1f, currentDist=%.1f\n",
- res.numPoints - 1, oldDist, dists[0] );
- }
- oldDist = dists[0];
- if (skelettonReached && weight*dists[0] < minDist) {
- minDist = dists[0];
- res.absMin = res.numPoints - 1; // has already been increased
- }
-
- // check right:
- testOfs = nextOfs+1;
- if (testOfs%line!=0) {
- // check top right:
- PROCESS_PIXEL
- testOfs = nextOfs-line;
- if (testOfs > 0) {
- testOfs++;
- PROCESS_PIXEL
- }
- // check bottom right:
- testOfs = nextOfs+line;
- if (testOfs < maxOfs) {
- testOfs++;
- PROCESS_PIXEL
- }
- }
- // check top:
- testOfs = nextOfs-line;
- if (testOfs > 0) {
- PROCESS_PIXEL
- }
- // check left:
- testOfs = nextOfs-1;
- if (nextOfs%line!=0) {
- PROCESS_PIXEL
- // check top left:
- testOfs = nextOfs-line;
- if (testOfs > 0) {
- testOfs--;
- PROCESS_PIXEL
- }
- // check bottom left:
- testOfs = nextOfs+line;
- if (testOfs < maxOfs) {
- testOfs--;
- PROCESS_PIXEL
- }
- }
- // check bottom:
- testOfs = nextOfs+line;
- if (testOfs < maxOfs) {
- PROCESS_PIXEL
- }
- // check for run on gradient:
- if (minGrad < 0.5) {
- candOfs = gradCand;
- if (debug) printf( "." );
- }
- else if (debug) printf( "x" );
- } while (candOfs != nextOfs && maxHist > 0);
-
- if (res.absMin < (res.numPoints-10)) {
- res.absMin += (int)(sqrt(minDist)/2.0);
-// int cutX = (int)(res.traceline[2*res.absMin]-0.5);
-// int cutY = (int)(res.traceline[2*res.absMin+1]-0.5);
-// int cutOfs = cutX + line*cutY;
-// histVal = *((mitkIpUInt2_t*)history->data+cutOfs);
-// printf( "histVal at Cut=%i\n", histVal );
-// if (histVal > 1) {
- res.cutIt = true;
- float cutXf = (float)res.traceline[2*res.absMin];
- float cutYf = (float)res.traceline[2*res.absMin+1];
- queryPt[0] = cutXf;
- queryPt[1] = cutYf;
- annTree->annkSearch( queryPt, 1, nnIdx, dists );
- int cutIdx1 = nnIdx[0];
- res.cutCoords[0] = contour[2*cutIdx1];
- res.cutCoords[1] = contour[2*cutIdx1+1];
- int cutIdx2 = cutIdx1;
- float minDist = 100000000;
- int testCnt = 0;
- for (int i=0; i<sizeContour; i++) {
- int idxDif = abs(cutIdx1-i);
- // take wraparound into account:
- if (idxDif > (sizeContour/2)) idxDif = sizeContour - idxDif;
- if ( idxDif > 50 ) {
- float dist = (cutXf-contour[2*i])*(cutXf-contour[2*i]) + (cutYf-contour[2*i+1])*(cutYf-contour[2*i+1]);
- if (dist < minDist) {
- minDist = dist;
- cutIdx2 = i;
- }
- }
- else testCnt++;
- }
- res.cutCoords[2] = contour[2*cutIdx2];
- res.cutCoords[3] = contour[2*cutIdx2+1];
- if (debug) printf( "idx1=%i, idx2=%i, %i pts not evaluated.\n", cutIdx1, cutIdx2, testCnt );
-
- if ((res.cutCoords[0] == res.cutCoords[2]) &&
- (res.cutCoords[1] == res.cutCoords[3]))
- {
- free( contour );
- // free ANN stuff:
- annDeallocPt( queryPt );
- annDeallocPts( dataPts );
- delete[] nnIdx;
- delete[] dists;
- delete annTree;
-
- res.cutIt = false;
-
- return res;
- }
- float *curve1 = (float*)malloc( 2*sizeof(float)*sizeContour );
- float *curve2 = (float*)malloc( 2*sizeof(float)*sizeContour );
- int sizeCurve1, sizeCurve2;
- ipMITKSegmentationSplitContour( contour, sizeContour, res.cutCoords, curve1, sizeCurve1, curve2, sizeCurve2 );
- float clickX = (float)(ofs % line) + 0.5;
- float clickY = (float)(ofs / line) + 0.5;
- if (ipMITKSegmentationIsInsideContour( curve1, sizeCurve1, clickX, clickY )) {
- res.deleteCurve = curve1;
- res.deleteSize = sizeCurve1;
- free( curve2 );
- }
- else {
- res.deleteCurve = curve2;
- res.deleteSize = sizeCurve2;
- free( curve1 );
- }
- }
-
-
- free( contour );
- // free ANN stuff:
- annDeallocPt( queryPt );
- annDeallocPts( dataPts );
- delete[] nnIdx;
- delete[] dists;
- delete annTree;
-
- return res;
-}
diff --git a/Utilities/IpSegmentation/ipSegmentationRegionGrower.cpp b/Utilities/IpSegmentation/ipSegmentationRegionGrower.cpp
deleted file mode 100755
index f4779482f5..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationRegionGrower.cpp
+++ /dev/null
@@ -1,218 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-
-#include <assert.h>
-#include <queue>
-#include <mitkIpPicTypeMultiplex.h>
-#include "ipSegmentation.h"
-
-/*
-Starts a 4 neighbourhood region growing at startOfs (y*picWidth+x) of the 2D image src.
-If relativeBounds is true, the region grows in [base-lowerBound, base+upperBound], in which base is the average
-color of the 9 pixels around startOfs. If relativeBounds is false, the region grows in [lowerBound, upperBound].
-If maxIterations is > 0, the growing process is stopped after maxIterations.
-If segBuffer is 0, new memory for the segmented image is allocated and returned, else the segBuffer is used
-to store the result (has to be an 8-bit datatype, e.g. mitkIpUInt1_t).
-histBuffer must be 0 or a pointer to a 16-bit mitkIpUInt1_t image of the same size as src. In case of the latter,
-history data is written to that buffer: the seed pixel gets a 1, all direct neighbours 2 etc. The buffer is
-not cleared in this function and can thus hold history data of several growing processes in different areas.
-*/
-template<typename PicType>
-mitkIpPicDescriptor*
-tmGrowRegion4N( mitkIpPicDescriptor *src, int startOfs, bool relativeBounds, float lowerBoundFlt, float upperBoundFlt, int maxIterations, mitkIpPicDescriptor *segBuffer, int &contourOfs, float &startCol, mitkIpPicDescriptor *histBuffer )
-{
- PicType lowerBound = static_cast<PicType>(lowerBoundFlt);
- PicType upperBound = static_cast<PicType>(upperBoundFlt);
- std::queue<int> ofsQueue;
-
- if (maxIterations <= 0) maxIterations = 32000;
- if (!src) return nullptr;
- if (!segBuffer) {
- segBuffer = mitkIpPicCopyHeader( src, segBuffer );
- segBuffer->type = mitkIpPicUInt;
- segBuffer->bpe = 8;
- mitkIpUInt4_t size = _mitkIpPicSize( segBuffer );
- segBuffer->data = malloc( size );
- }
- else {
- // check if dimension of segBuffer is valid, if not: change it!
- if (segBuffer->n[0] != src->n[0] || segBuffer->n[1] != src->n[1]) {
- segBuffer->n[0] = src->n[0];
- segBuffer->n[1] = src->n[1];
- mitkIpUInt4_t size = _mitkIpPicSize( segBuffer );
- segBuffer->data = realloc( segBuffer->data, size );
- if (segBuffer->data == nullptr) return nullptr;
- }
- }
- if (histBuffer) {
- // check if dimension of histBuffer is valid, if not: change it!
- if (histBuffer->n[0] != src->n[0] || histBuffer->n[1] != src->n[1]) {
- histBuffer->n[0] = src->n[0];
- histBuffer->n[1] = src->n[1];
- mitkIpUInt4_t size = _mitkIpPicSize( histBuffer );
- histBuffer->data = realloc( histBuffer->data, size );
- if (histBuffer->data == nullptr) return nullptr;
- memset( histBuffer->data, 0, size ); // clear buffer
- }
- }
-
- int line = segBuffer->n[0];
- int maxOfs = (int)(line * segBuffer->n[1]);
- //PicType *start = ((PicType*)src->data) + startOfs;
- // init borders:
- PicType lowest, highest;
- if (relativeBounds) {
-
- // average base color from 3x3 block:
- // check for edges of image
- int offset;
- int numberOfValidOffsets = 0;
- int baseCol = 0;
- offset = startOfs; if ( (offset >= 0) && (offset < (int)(src->n[0] * src->n[1])) ) { baseCol += *((PicType*)(src->data)+offset); ++numberOfValidOffsets; }
- offset = startOfs+1; if ( (offset >= 0) && (offset < (int)(src->n[0] * src->n[1])) ) { baseCol += *((PicType*)(src->data)+offset); ++numberOfValidOffsets; }
- offset = startOfs+1-line; if ( (offset >= 0) && (offset < (int)(src->n[0] * src->n[1])) ) { baseCol += *((PicType*)(src->data)+offset); ++numberOfValidOffsets; }
- offset = startOfs-line; if ( (offset >= 0) && (offset < (int)(src->n[0] * src->n[1])) ) { baseCol += *((PicType*)(src->data)+offset); ++numberOfValidOffsets; }
- offset = startOfs-1-line; if ( (offset >= 0) && (offset < (int)(src->n[0] * src->n[1])) ) { baseCol += *((PicType*)(src->data)+offset); ++numberOfValidOffsets; }
- offset = startOfs-1; if ( (offset >= 0) && (offset < (int)(src->n[0] * src->n[1])) ) { baseCol += *((PicType*)(src->data)+offset); ++numberOfValidOffsets; }
- offset = startOfs-1+line; if ( (offset >= 0) && (offset < (int)(src->n[0] * src->n[1])) ) { baseCol += *((PicType*)(src->data)+offset); ++numberOfValidOffsets; }
- offset = startOfs+line; if ( (offset >= 0) && (offset < (int)(src->n[0] * src->n[1])) ) { baseCol += *((PicType*)(src->data)+offset); ++numberOfValidOffsets; }
- offset = startOfs+1+line; if ( (offset >= 0) && (offset < (int)(src->n[0] * src->n[1])) ) { baseCol += *((PicType*)(src->data)+offset); ++numberOfValidOffsets; }
-
- if ( numberOfValidOffsets > 0 )
- baseCol = (PicType)( (float)baseCol / (float)numberOfValidOffsets );
-
- lowest = baseCol - lowerBound;
- highest = baseCol + upperBound;
- startCol = (float)baseCol;
- }
- else {
- lowest = lowerBound;
- highest = upperBound;
- startCol = 0.0f;
- }
-
- memset( segBuffer->data, 0, _mitkIpPicSize(segBuffer) ); // clear buffer
-
- PicType value = *((PicType*)src->data+startOfs);
- if ( value >=lowest && value <=highest ) {
- ofsQueue.push( startOfs );
- }
-
- contourOfs = -1;
- int testOfs;
- mitkIpUInt1_t segVal;
- int iteration = 0;
- int currentWave = 1;
- int nextWave = 0;
-
- while (!ofsQueue.empty() && iteration<=maxIterations) {
- int nextOfs = ofsQueue.front();
- ofsQueue.pop();
- currentWave--;
- *((mitkIpUInt1_t*)segBuffer->data+nextOfs) = 1;
- if (histBuffer) {
- *((mitkIpUInt2_t*)histBuffer->data+nextOfs) = (mitkIpUInt2_t)(iteration+1); // seed point should get history = 1
- }
- if (nextOfs > contourOfs) contourOfs = nextOfs;
- // check right:
- testOfs = nextOfs+1;
- if (testOfs%line!=0) {
- segVal = *((mitkIpUInt1_t*)segBuffer->data+testOfs);
- if ( segVal == 0 ) {
- value = *((PicType*)src->data+testOfs);
- if ( value >=lowest && value <=highest ) {
- ofsQueue.push( testOfs );
- nextWave++;
- *((mitkIpUInt1_t*)segBuffer->data+testOfs) = 2;
- }
- }
- }
- // check top:
- testOfs = nextOfs-line;
- if (testOfs > 0) {
- segVal = *((mitkIpUInt1_t*)segBuffer->data+testOfs);
- if ( segVal == 0 ) {
- value = *((PicType*)src->data+testOfs);
- if ( value >=lowest && value <=highest ) {
- ofsQueue.push( testOfs );
- nextWave++;
- *((mitkIpUInt1_t*)segBuffer->data+testOfs) = 2;
- }
- }
- }
- // check left:
- testOfs = nextOfs-1;
- if (nextOfs%line!=0) {
- segVal = *((mitkIpUInt1_t*)segBuffer->data+testOfs);
- if ( segVal == 0 ) {
- value = *((PicType*)src->data+testOfs);
- if ( value >=lowest && value <=highest ) {
- ofsQueue.push( testOfs );
- nextWave++;
- *((mitkIpUInt1_t*)segBuffer->data+testOfs) = 2;
- }
- }
- }
- // check bottom:
- testOfs = nextOfs+line;
- if (testOfs < maxOfs) {
- segVal = *((mitkIpUInt1_t*)segBuffer->data+testOfs);
- if ( segVal == 0 ) {
- value = *((PicType*)src->data+testOfs);
- if ( value >=lowest && value <=highest ) {
- ofsQueue.push( testOfs );
- nextWave++;
- *((mitkIpUInt1_t*)segBuffer->data+testOfs) = 2;
- }
- }
- }
- // check for number of iterations:
- if (currentWave == 0) {
- currentWave = nextWave;
- nextWave = 0;
- iteration++;
- }
- }
-
- return segBuffer;
-}
-
-
-mitkIpPicDescriptor*
-ipMITKSegmentationGrowRegion4N( mitkIpPicDescriptor *src, int startOfs, bool relativeBounds, float lowerBound, float upperBound, int maxIterations, mitkIpPicDescriptor *segBuffer, mitkIpPicDescriptor *histBuffer )
-{
- mitkIpPicDescriptor *result = nullptr;
- int contourOfs;
- float startCol;
-
- if (ipMITKSegmentationUndoIsEnabled (segBuffer)) {
- ipMITKSegmentationUndoSave (segBuffer);
- }
-
- mitkIpPicTypeMultiplexR9( tmGrowRegion4N, src, result, startOfs, relativeBounds, lowerBound, upperBound, maxIterations, segBuffer, contourOfs, startCol, histBuffer );
- return result;
-}
-
-
-
-mitkIpPicDescriptor*
-ipMITKSegmentationGrowRegion4N( mitkIpPicDescriptor *src, int startOfs, bool relativeBounds, float lowerBound, float upperBound, int maxIterations, mitkIpPicDescriptor *segBuffer, int &contourOfs, float &startCol, mitkIpPicDescriptor *histBuffer )
-{
- mitkIpPicDescriptor *result = nullptr;
-
- if (ipMITKSegmentationUndoIsEnabled (segBuffer)) {
- ipMITKSegmentationUndoSave (segBuffer);
- }
-
- mitkIpPicTypeMultiplexR9( tmGrowRegion4N, src, result, startOfs, relativeBounds, lowerBound, upperBound, maxIterations, segBuffer, contourOfs, startCol, histBuffer );
- return result;
-}
diff --git a/Utilities/IpSegmentation/ipSegmentationReplaceRegion.cpp b/Utilities/IpSegmentation/ipSegmentationReplaceRegion.cpp
deleted file mode 100755
index e697b93e6d..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationReplaceRegion.cpp
+++ /dev/null
@@ -1,86 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-
-#include <queue>
-#include "ipSegmentation.h"
-
-int
-ipMITKSegmentationReplaceRegion4N( mitkIpPicDescriptor *seg, int startOfs, mitkIpInt1_t newValue )
-{
- mitkIpPicTSV_t* tag;
-
- std::queue<int> ofsQueue;
-
- if (ipMITKSegmentationUndoIsEnabled (seg)) {
- ipMITKSegmentationUndoSave (seg);
- }
- tag = mitkIpPicDelTag (seg, tagSEGMENTATION_EMPTY);
- if (tag) {
- mitkIpPicFreeTag (tag);
- }
-
- if (seg->bpe != 8) return 0;
-
- int line = seg->n[0];
- int maxOfs = (int)(line * seg->n[1]);
- int testOfs;
- mitkIpInt1_t replaceMe = *((mitkIpInt1_t*)seg->data + startOfs);
- if (replaceMe == newValue) return 0;
-
- mitkIpInt1_t segVal;
- ofsQueue.push( startOfs );
- *((mitkIpInt1_t*)seg->data+startOfs) = newValue;
- int regionSize = 0;
-
- while (!ofsQueue.empty()) {
- int nextOfs = ofsQueue.front();
- ofsQueue.pop();
- regionSize++;
- // check right:
- testOfs = nextOfs+1;
- if (testOfs%line!=0) {
- segVal = *((mitkIpInt1_t*)seg->data+testOfs);
- if ( segVal == replaceMe ) {
- ofsQueue.push( testOfs );
- *((mitkIpInt1_t*)seg->data+testOfs) = newValue;
- }
- }
- // check top:
- testOfs = nextOfs-line;
- if (testOfs >= 0) {
- segVal = *((mitkIpInt1_t*)seg->data+testOfs);
- if ( segVal == replaceMe ) {
- ofsQueue.push( testOfs );
- *((mitkIpInt1_t*)seg->data+testOfs) = newValue;
- }
- }
- // check left:
- testOfs = nextOfs-1;
- if (nextOfs%line!=0) {
- segVal = *((mitkIpInt1_t*)seg->data+testOfs);
- if ( segVal == replaceMe ) {
- ofsQueue.push( testOfs );
- *((mitkIpInt1_t*)seg->data+testOfs) = newValue;
- }
- }
- // check bottom:
- testOfs = nextOfs+line;
- if (testOfs < maxOfs) {
- segVal = *((mitkIpInt1_t*)seg->data+testOfs);
- if ( segVal == replaceMe ) {
- ofsQueue.push( testOfs );
- *((mitkIpInt1_t*)seg->data+testOfs) = newValue;
- }
- }
- }
- return regionSize;
-}
diff --git a/Utilities/IpSegmentation/ipSegmentationUndo.c b/Utilities/IpSegmentation/ipSegmentationUndo.c
deleted file mode 100644
index 0f7e1a75ec..0000000000
--- a/Utilities/IpSegmentation/ipSegmentationUndo.c
+++ /dev/null
@@ -1,240 +0,0 @@
-/*============================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center (DKFZ)
-All rights reserved.
-
-Use of this source code is governed by a 3-clause BSD license that can be
-found in the LICENSE file.
-
-============================================================================*/
-
-#include <string.h>
-#include <assert.h>
-#include "ipSegmentationP.h"
-
-static char* tagUNDO = "SEGMENTATION_UNDO";
-static char* tagUNDO_DATA = "DATA";
-static char* tagUNDO_LEVEL = "LEVEL";
-
-// Implemented in mitkIpPicDelT.c
-static mitkIpPicTSV_t *_mitkIpPicRemoveTag( _mitkIpPicTagsElement_t **head,
- _mitkIpPicTagsElement_t *which,
- char *tag );
-
-void
-ipMITKSegmentationUndoEnable (mitkIpPicDescriptor* segmentation, const mitkIpUInt1_t level)
-{
- mitkIpPicTSV_t *undo, *data, *max;
-
- assert (segmentation);
- undo = mitkIpPicQueryTag (segmentation, tagUNDO);
- if (!undo) {
- undo = (mitkIpPicTSV_t *) malloc (sizeof (mitkIpPicTSV_t));
- if (!undo) {
- ipMITKSegmentationError (ipMITKSegmentationOUT_OF_MEMORY);
- }
- strcpy (undo->tag, tagUNDO);
- undo->type = mitkIpPicTSV;
- undo->bpe = 32;
- undo->dim = 1;
- undo->n[0] = 0;
- undo->value = NULL;
- mitkIpPicAddTag (segmentation, undo);
- }
-
- data = mitkIpPicQuerySubTag (undo, tagUNDO_DATA);
- if (!data) {
- data = (mitkIpPicTSV_t *) malloc (sizeof (mitkIpPicTSV_t));
- if (!data) {
- ipMITKSegmentationError (ipMITKSegmentationOUT_OF_MEMORY);
- }
- strcpy (data->tag, tagUNDO_DATA);
- data->type = mitkIpPicTSV;
- data->bpe = 32;
- data->dim = 1;
- data->n[0] = 0;
- data->value = NULL;
- mitkIpPicAddSubTag (undo, data);
- }
- if (data->n[0] > level) {
- /* remove levels which exceed the maximum */
- mitkIpUInt1_t i;
-
- for (i = data->n[0] - level; i > 0; i--) {
- _mitkIpPicTagsElement_t *head = (_mitkIpPicTagsElement_t *) data->value;
- mitkIpPicTSV_t* tag = _mitkIpPicRemoveTag (&head, head, head->tsv->tag);
- data->value = head;
- data->n[0]--;
- mitkIpPicFreeTag (tag);
- }
- }
-
- max = mitkIpPicQuerySubTag (undo, tagUNDO_LEVEL);
- if (max) {
- /* change the maximum of levels */
- mitkIpUInt1_t* value = (mitkIpUInt1_t *) max->value;
- *value = level;
- } else {
- mitkIpUInt1_t* value = (mitkIpUInt1_t *) malloc (sizeof (mitkIpUInt1_t));
- if (!value) {
- ipMITKSegmentationError (ipMITKSegmentationOUT_OF_MEMORY);
- }
- *value = level;
-
- max = (mitkIpPicTSV_t *) malloc (sizeof (mitkIpPicTSV_t));
- if (!max) {
- ipMITKSegmentationError (ipMITKSegmentationOUT_OF_MEMORY);
- }
- strcpy (max->tag, tagUNDO_LEVEL);
- max->type = mitkIpPicUInt;
- max->bpe = 8;
- max->dim = 1;
- max->n[0] = 1;
- max->value = value;
- mitkIpPicAddSubTag (undo, max);
- }
-}
-
-void
-ipMITKSegmentationUndoDisable (mitkIpPicDescriptor* segmentation)
-{
- mitkIpPicTSV_t *undo;
-
- assert (segmentation);
- undo = mitkIpPicDelTag (segmentation, tagUNDO);
- mitkIpPicFreeTag (undo);
-}
-
-mitkIpBool_t
-ipMITKSegmentationUndoIsEnabled (mitkIpPicDescriptor* segmentation)
-{
- mitkIpPicTSV_t *undo = NULL;
-
- if (segmentation) {
- undo = mitkIpPicQueryTag (segmentation, tagUNDO);
- }
- return (undo ? mitkIpTrue : mitkIpFalse);
-}
-
-void
-ipMITKSegmentationUndoSave (mitkIpPicDescriptor* segmentation)
-{
- mitkIpPicTSV_t *undo, *data, *level, *tag;
-
- assert (segmentation);
- undo = mitkIpPicQueryTag (segmentation, tagUNDO);
- if (!undo) {
- ipMITKSegmentationError (ipMITKSegmentationUNDO_DISABLED);
- }
-
- /* if no level is available ... */
- data = mitkIpPicQuerySubTag (undo, tagUNDO_DATA);
- level = mitkIpPicQuerySubTag (undo, tagUNDO_LEVEL);
- if (*((mitkIpUInt1_t *) level->value) > 0) {
- if (data->n[0] == *((mitkIpUInt1_t *) level->value)) {
- /* ... remove the first one. */
- _mitkIpPicTagsElement_t* head = (_mitkIpPicTagsElement_t *) data->value;
- mitkIpPicTSV_t* tag = _mitkIpPicRemoveTag (&head, head, head->tsv->tag);
- data->value = head;
- data->n[0]--;
- mitkIpPicFreeTag (tag);
- }
- /* build and store the level */
- tag = (mitkIpPicTSV_t *) malloc (sizeof (mitkIpPicTSV_t));
- if (!tag) {
- ipMITKSegmentationError (ipMITKSegmentationOUT_OF_MEMORY);
- }
- strcpy (tag->tag, "IMAGE");
- tag->type = segmentation->type;
- tag->bpe = segmentation->bpe;
- tag->dim = segmentation->dim;
- tag->n[0] = segmentation->n[0];
- tag->n[1] = segmentation->n[1];
- tag->value = malloc (_mitkIpPicSize (segmentation));
- memmove (tag->value, segmentation->data, _mitkIpPicSize (segmentation));
- mitkIpPicAddSubTag (data, tag);
- }
-}
-
-void
-ipMITKSegmentationUndo (mitkIpPicDescriptor* segmentation)
-{
- mitkIpPicTSV_t *undo, *data;
-
- assert (segmentation);
- undo = mitkIpPicQueryTag (segmentation, tagUNDO);
- if (!undo) {
- ipMITKSegmentationError (ipMITKSegmentationUNDO_DISABLED);
- }
-
- /* if any level is stored ... */
- data = mitkIpPicQuerySubTag (undo, tagUNDO_DATA);
- if (data->n[0]) {
- /* ... replace the image data and remove this level */
- _mitkIpPicTagsElement_t* head = (_mitkIpPicTagsElement_t *) data->value;
- _mitkIpPicTagsElement_t* current = head;
- mitkIpPicTSV_t* tag;
-
- while( current->next != NULL ) {
- current = current->next;
- }
- tag = _mitkIpPicRemoveTag (&head, current, current->tsv->tag);
- data->value = head;
- data->n[0]--;
- memmove (segmentation->data, tag->value, _mitkIpPicSize (segmentation));
- mitkIpPicFreeTag (tag);
-
- tag = mitkIpPicDelTag (segmentation, tagSEGMENTATION_EMPTY);
- if (tag) {
- mitkIpPicFreeTag (tag);
- }
- }
-}
-
-mitkIpBool_t
-ipMITKSegmentationUndoAvailable (mitkIpPicDescriptor* segmentation)
-{
- mitkIpPicTSV_t *undo, *data;
-
- assert (segmentation);
- undo = mitkIpPicQueryTag (segmentation, tagUNDO);
- if (!undo) {
- ipMITKSegmentationError (ipMITKSegmentationUNDO_DISABLED);
- }
- data = mitkIpPicQuerySubTag (undo, tagUNDO_DATA);
- return (data->n[0] ? mitkIpTrue : mitkIpFalse);
-}
-
-mitkIpPicTSV_t *
-_mitkIpPicRemoveTag( _mitkIpPicTagsElement_t **head, _mitkIpPicTagsElement_t *which, char *tag)
-{
- mitkIpPicTSV_t *tsv = NULL;
-
- if( which != NULL )
- {
- tsv = which->tsv;
-
- if( which->prev == NULL ) /* which is the current head */
- {
- *head = which->next;
-
- if( *head )
- (*head)->prev = NULL;
- }
- else if( which->next == NULL ) /* which is the current tail */
- {
- which->prev->next = NULL;
- }
- else /* which is somewhere if the list */
- {
- which->prev->next = which->next;
- which->next->prev = which->prev;
- }
-
- free( which );
- }
-
- return( tsv );
-}