diff --git a/Core/Code/DataManagement/mitkTimeGeometry.cpp b/Core/Code/DataManagement/mitkTimeGeometry.cpp new file mode 100644 index 0000000000..5fdd3a36db --- /dev/null +++ b/Core/Code/DataManagement/mitkTimeGeometry.cpp @@ -0,0 +1,94 @@ +/*=================================================================== + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center, +Division of Medical and Biological Informatics. +All rights reserved. + +This software is distributed WITHOUT ANY WARRANTY; without +even the implied warranty of MERCHANTABILITY or FITNESS FOR +A PARTICULAR PURPOSE. + +See LICENSE.txt or http://www.mitk.org for details. + +===================================================================*/ +#include + +mitk::TimeGeometry::TimeGeometry() +{ +} + +mitk::TimeGeometry::~TimeGeometry() +{ +} + +void mitk::TimeGeometry::Initialize() +{ +} + +mitk::Point3D mitk::TimeGeometry::GetCornerPointInWorldSpace(int id) const +{ + assert(id >= 0); + assert(m_BoundingBox.IsNotNull()); + + BoundingBox::BoundsArrayType bounds = m_BoundingBox->GetBounds(); + + Point3D cornerpoint; + switch(id) + { + case 0: FillVector3D(cornerpoint, bounds[0],bounds[2],bounds[4]); break; + case 1: FillVector3D(cornerpoint, bounds[0],bounds[2],bounds[5]); break; + case 2: FillVector3D(cornerpoint, bounds[0],bounds[3],bounds[4]); break; + case 3: FillVector3D(cornerpoint, bounds[0],bounds[3],bounds[5]); break; + case 4: FillVector3D(cornerpoint, bounds[1],bounds[2],bounds[4]); break; + case 5: FillVector3D(cornerpoint, bounds[1],bounds[2],bounds[5]); break; + case 6: FillVector3D(cornerpoint, bounds[1],bounds[3],bounds[4]); break; + case 7: FillVector3D(cornerpoint, bounds[1],bounds[3],bounds[5]); break; + default: + { + itkExceptionMacro(<<"A cube only has 8 corners. These are labeled 0-7."); + return NULL; + } + } + + // TimeGeometry has no Transformation. Therefore the bounding box + // contains all data in world coordinates + return cornerpoint; +} + +mitk::Point3D mitk::TimeGeometry::GetCornerPointInWorldSpace(bool xFront, bool yFront, bool zFront) const +{ + assert(m_BoundingBox.IsNotNull()); + BoundingBox::BoundsArrayType bounds = m_BoundingBox->GetBounds(); + + Point3D cornerpoint; + cornerpoint[0] = (xFront ? bounds[0] : bounds[1]); + cornerpoint[1] = (yFront ? bounds[2] : bounds[3]); + cornerpoint[2] = (zFront ? bounds[4] : bounds[5]); + + return cornerpoint; +} + +mitk::Point3D mitk::TimeGeometry::GetCenterInWorldSpace() const +{ + assert(m_BoundingBox.IsNotNull()); + return m_BoundingBox->GetCenter(); +} + +double mitk::TimeGeometry::GetDiagonalLength2InWorldSpace() const +{ + Vector3D diagonalvector = GetCornerPointInWorldSpace()-GetCornerPointInWorldSpace(false, false, false); + return diagonalvector.GetSquaredNorm(); +} + +double mitk::TimeGeometry::GetDiagonalLengthinWorldSpace() const +{ + return sqrt(GetDiagonalLength2InWorldSpace()); +} + +bool mitk::TimeGeometry::IsInside(const mitk::Point3D& p) const +{ + return m_BoundingBox->IsInside(index); +} + diff --git a/Core/Code/DataManagement/mitkTimeGeometry.h b/Core/Code/DataManagement/mitkTimeGeometry.h new file mode 100644 index 0000000000..120410a9e2 --- /dev/null +++ b/Core/Code/DataManagement/mitkTimeGeometry.h @@ -0,0 +1,113 @@ +/*=================================================================== + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center, +Division of Medical and Biological Informatics. +All rights reserved. + +This software is distributed WITHOUT ANY WARRANTY; without +even the implied warranty of MERCHANTABILITY or FITNESS FOR +A PARTICULAR PURPOSE. + +See LICENSE.txt or http://www.mitk.org for details. + +===================================================================*/ + +#ifndef TimeGeometry_h +#define TimeGeometry_h + +//MITK +#include +#include +#include "mitkOperationActor.h" + +// To be replaced +#include + +// STL +#include + +//ITK +#include +#include + +namespace mitk { + +// typedef itk::BoundingBox BoundingBox; +// typedef itk::FixedArray TimeBounds; + + class MITK_CORE_EXPORT TimeGeometry : public itk::Object, public OperationActor + { + typedef unsigned long TimePointType; + typedef std::size_t TimeStepType; + + public: + virtual TimeStepType GetNumberOfTimeSteps() = 0; + virtual TimePointType GetMinimumTimePoint () = 0; + virtual TimePointType GetMaximumTimePoint () = 0; + + //##Documentation + //## @brief Get the time bounds (in ms) + virtual TimeBounds GetTimeBounds( ); + + virtual bool IsValidTimePoint (TimePointType& timePoint) = 0; + virtual bool IsValidTimeStep (TimeStepType& timeStep) = 0; + + virtual TimePointType TimeStepToTimePoint (TimeStepType& timeStep) = 0; + virtual TimeStepType TimePointToTimeStep (TimePointType& timePoint) = 0; + + // To be implemented by this class + virtual void ApplyTransformMatrixToAllTimeSteps (Transform3D& transformation) = 0; + + virtual bool IsValid () + //##Documentation + //## @brief Get the position of the corner number \a id (in world coordinates) + //## + //## See SetImageGeometry for how a corner is defined on images. + Point3D GetCornerPointInWorldSpace(int id) const; + + //##Documentation + //## @brief Get the position of a corner (in world coordinates) + //## + //## See SetImageGeometry for how a corner is defined on images. + Point3D GetCornerPointInWorldSpace(bool xFront=true, bool yFront=true, bool zFront=true) const; + + //##Documentation + //## @brief Get the center of the bounding-box in mm + //## + Point3D GetCenterInWorldSpace() const; + + //##Documentation + //## @brief Get the squared length of the diagonal of the bounding-box in mm + //## + double GetDiagonalLength2InWorldSpace() const; + + //##Documentation + //## @brief Get the length of the diagonal of the bounding-box in mm + //## + double GetDiagonalLengthinWorldSpace() const; + + //##Documentation + //## @brief Test whether the point \a p (world coordinates in mm) is + //## inside the bounding box + bool IsWordlPointInside(const mitk::Point3D& p) const; + + //##Documentation + //## @brief Updates the bounding box to cover the area used in all time steps + //## + //## The bounding box is updated by this method. The new bounding box + //## covers an area which includes all bounding boxes during + //## all times steps. + virtual void UpdateBoundingBox(); + + virtual void Initialize(); + protected: + TimeGeometry(); + virtual ~TimeGeometry(); + + BoundingBox::Pointer m_BoundingBox; + }; // end class TimeGeometry + +} // end namespace MITK +#endif // TimeGeometry_h \ No newline at end of file diff --git a/Core/Code/files.cmake b/Core/Code/files.cmake index a962092fd6..087b251c39 100644 --- a/Core/Code/files.cmake +++ b/Core/Code/files.cmake @@ -1,360 +1,362 @@ set(H_FILES Algorithms/itkImportMitkImageContainer.h Algorithms/itkImportMitkImageContainer.txx Algorithms/itkLocalVariationImageFilter.h Algorithms/itkLocalVariationImageFilter.txx Algorithms/itkMITKScalarImageToHistogramGenerator.h Algorithms/itkMITKScalarImageToHistogramGenerator.txx Algorithms/itkTotalVariationDenoisingImageFilter.h Algorithms/itkTotalVariationDenoisingImageFilter.txx Algorithms/itkTotalVariationSingleIterationImageFilter.h Algorithms/itkTotalVariationSingleIterationImageFilter.txx Algorithms/mitkBilateralFilter.h Algorithms/mitkBilateralFilter.cpp Algorithms/mitkInstantiateAccessFunctions.h Algorithms/mitkPixelTypeList.h # Preprocessor macros taken from Boost Algorithms/mitkPPArithmeticDec.h Algorithms/mitkPPArgCount.h Algorithms/mitkPPCat.h Algorithms/mitkPPConfig.h Algorithms/mitkPPControlExprIIf.h Algorithms/mitkPPControlIf.h Algorithms/mitkPPControlIIf.h Algorithms/mitkPPDebugError.h Algorithms/mitkPPDetailAutoRec.h Algorithms/mitkPPDetailDMCAutoRec.h Algorithms/mitkPPExpand.h Algorithms/mitkPPFacilitiesEmpty.h Algorithms/mitkPPFacilitiesExpand.h Algorithms/mitkPPLogicalBool.h Algorithms/mitkPPRepetitionDetailDMCFor.h Algorithms/mitkPPRepetitionDetailEDGFor.h Algorithms/mitkPPRepetitionDetailFor.h Algorithms/mitkPPRepetitionDetailMSVCFor.h Algorithms/mitkPPRepetitionFor.h Algorithms/mitkPPSeqElem.h Algorithms/mitkPPSeqForEach.h Algorithms/mitkPPSeqForEachProduct.h Algorithms/mitkPPSeq.h Algorithms/mitkPPSeqEnum.h Algorithms/mitkPPSeqSize.h Algorithms/mitkPPSeqToTuple.h Algorithms/mitkPPStringize.h Algorithms/mitkPPTupleEat.h Algorithms/mitkPPTupleElem.h Algorithms/mitkPPTupleRem.h Algorithms/mitkClippedSurfaceBoundsCalculator.h Algorithms/mitkExtractSliceFilter.h Algorithms/mitkConvert2Dto3DImageFilter.h Algorithms/mitkPlaneClipping.h Common/mitkExceptionMacro.h Common/mitkServiceBaseObject.h Common/mitkTestingMacros.h + DataManagement/mitkTimeGeometry.h DataManagement/mitkImageAccessByItk.h DataManagement/mitkImageCast.h DataManagement/mitkImagePixelAccessor.h DataManagement/mitkImagePixelReadAccessor.h DataManagement/mitkImagePixelWriteAccessor.h DataManagement/mitkImageReadAccessor.h DataManagement/mitkImageWriteAccessor.h DataManagement/mitkITKImageImport.h DataManagement/mitkITKImageImport.txx DataManagement/mitkImageToItk.h DataManagement/mitkImageToItk.txx Interactions/mitkEventMapperAddOn.h Interfaces/mitkIDataNodeReader.h IO/mitkPixelTypeTraits.h ) set(CPP_FILES Algorithms/mitkBaseDataSource.cpp Algorithms/mitkBaseProcess.cpp Algorithms/mitkDataNodeSource.cpp Algorithms/mitkGeometry2DDataToSurfaceFilter.cpp Algorithms/mitkHistogramGenerator.cpp Algorithms/mitkImageChannelSelector.cpp Algorithms/mitkImageSliceSelector.cpp Algorithms/mitkImageSource.cpp Algorithms/mitkImageTimeSelector.cpp Algorithms/mitkImageToImageFilter.cpp Algorithms/mitkPointSetSource.cpp Algorithms/mitkPointSetToPointSetFilter.cpp Algorithms/mitkRGBToRGBACastImageFilter.cpp Algorithms/mitkSubImageSelector.cpp Algorithms/mitkSurfaceSource.cpp Algorithms/mitkSurfaceToSurfaceFilter.cpp Algorithms/mitkUIDGenerator.cpp Algorithms/mitkVolumeCalculator.cpp Algorithms/mitkClippedSurfaceBoundsCalculator.cpp Algorithms/mitkExtractSliceFilter.cpp Algorithms/mitkConvert2Dto3DImageFilter.cpp Controllers/mitkBaseController.cpp Controllers/mitkCallbackFromGUIThread.cpp Controllers/mitkCameraController.cpp Controllers/mitkCameraRotationController.cpp Controllers/mitkCoreActivator.cpp Controllers/mitkFocusManager.cpp Controllers/mitkLimitedLinearUndo.cpp Controllers/mitkOperationEvent.cpp Controllers/mitkPlanePositionManager.cpp Controllers/mitkProgressBar.cpp Controllers/mitkRenderingManager.cpp Controllers/mitkSliceNavigationController.cpp Controllers/mitkSlicesCoordinator.cpp Controllers/mitkSlicesRotator.cpp Controllers/mitkSlicesSwiveller.cpp Controllers/mitkStatusBar.cpp Controllers/mitkStepper.cpp Controllers/mitkTestManager.cpp Controllers/mitkUndoController.cpp Controllers/mitkVerboseLimitedLinearUndo.cpp Controllers/mitkVtkInteractorCameraController.cpp Controllers/mitkVtkLayerController.cpp + DataManagement/mitkTimeGeometry.cpp DataManagement/mitkAbstractTransformGeometry.cpp DataManagement/mitkAnnotationProperty.cpp DataManagement/mitkApplicationCursor.cpp DataManagement/mitkBaseData.cpp DataManagement/mitkBaseProperty.cpp DataManagement/mitkClippingProperty.cpp DataManagement/mitkChannelDescriptor.cpp DataManagement/mitkColorProperty.cpp DataManagement/mitkDataStorage.cpp #DataManagement/mitkDataTree.cpp DataManagement/mitkDataNode.cpp DataManagement/mitkDataNodeFactory.cpp #DataManagement/mitkDataTreeStorage.cpp DataManagement/mitkDisplayGeometry.cpp DataManagement/mitkEnumerationProperty.cpp DataManagement/mitkGeometry2D.cpp DataManagement/mitkGeometry2DData.cpp DataManagement/mitkGeometry3D.cpp DataManagement/mitkGeometryData.cpp DataManagement/mitkGroupTagProperty.cpp DataManagement/mitkImage.cpp DataManagement/mitkImageAccessorBase.cpp DataManagement/mitkImageCaster.cpp DataManagement/mitkImageCastPart1.cpp DataManagement/mitkImageCastPart2.cpp DataManagement/mitkImageCastPart3.cpp DataManagement/mitkImageCastPart4.cpp DataManagement/mitkImageDataItem.cpp DataManagement/mitkImageDescriptor.cpp DataManagement/mitkImageVtkAccessor.cpp DataManagement/mitkImageStatisticsHolder.cpp DataManagement/mitkLandmarkBasedCurvedGeometry.cpp DataManagement/mitkLandmarkProjectorBasedCurvedGeometry.cpp DataManagement/mitkLandmarkProjector.cpp DataManagement/mitkLevelWindow.cpp DataManagement/mitkLevelWindowManager.cpp DataManagement/mitkLevelWindowPreset.cpp DataManagement/mitkLevelWindowProperty.cpp DataManagement/mitkLookupTable.cpp DataManagement/mitkLookupTables.cpp # specializations of GenericLookupTable DataManagement/mitkMemoryUtilities.cpp DataManagement/mitkModalityProperty.cpp DataManagement/mitkModeOperation.cpp DataManagement/mitkNodePredicateAnd.cpp DataManagement/mitkNodePredicateBase.cpp DataManagement/mitkNodePredicateCompositeBase.cpp DataManagement/mitkNodePredicateData.cpp DataManagement/mitkNodePredicateDataType.cpp DataManagement/mitkNodePredicateDimension.cpp DataManagement/mitkNodePredicateFirstLevel.cpp DataManagement/mitkNodePredicateNot.cpp DataManagement/mitkNodePredicateOr.cpp DataManagement/mitkNodePredicateProperty.cpp DataManagement/mitkNodePredicateSource.cpp DataManagement/mitkPlaneOrientationProperty.cpp DataManagement/mitkPlaneGeometry.cpp DataManagement/mitkPlaneOperation.cpp DataManagement/mitkPointOperation.cpp DataManagement/mitkPointSet.cpp DataManagement/mitkProperties.cpp DataManagement/mitkPropertyList.cpp DataManagement/mitkRestorePlanePositionOperation.cpp DataManagement/mitkRotationOperation.cpp DataManagement/mitkSlicedData.cpp DataManagement/mitkSlicedGeometry3D.cpp DataManagement/mitkSmartPointerProperty.cpp DataManagement/mitkStandaloneDataStorage.cpp DataManagement/mitkStateTransitionOperation.cpp DataManagement/mitkStringProperty.cpp DataManagement/mitkSurface.cpp DataManagement/mitkSurfaceOperation.cpp DataManagement/mitkThinPlateSplineCurvedGeometry.cpp DataManagement/mitkTimeSlicedGeometry.cpp DataManagement/mitkTransferFunction.cpp DataManagement/mitkTransferFunctionProperty.cpp DataManagement/mitkTransferFunctionInitializer.cpp DataManagement/mitkVector.cpp DataManagement/mitkVtkInterpolationProperty.cpp DataManagement/mitkVtkRepresentationProperty.cpp DataManagement/mitkVtkResliceInterpolationProperty.cpp DataManagement/mitkVtkScalarModeProperty.cpp DataManagement/mitkVtkVolumeRenderingProperty.cpp DataManagement/mitkWeakPointerProperty.cpp DataManagement/mitkRenderingModeProperty.cpp DataManagement/mitkShaderProperty.cpp DataManagement/mitkResliceMethodProperty.cpp DataManagement/mitkMaterial.cpp Interactions/mitkAction.cpp Interactions/mitkAffineInteractor.cpp Interactions/mitkBindDispatcherInteractor.cpp Interactions/mitkCoordinateSupplier.cpp Interactions/mitkDataInteractor.cpp Interactions/mitkDispatcher.cpp Interactions/mitkDisplayCoordinateOperation.cpp Interactions/mitkDisplayInteractor.cpp Interactions/mitkDisplayPositionEvent.cpp # Interactions/mitkDisplayVectorInteractorLevelWindow.cpp # legacy, prob even now unneeded # Interactions/mitkDisplayVectorInteractorScroll.cpp Interactions/mitkEvent.cpp Interactions/mitkEventConfig.cpp Interactions/mitkEventDescription.cpp Interactions/mitkEventFactory.cpp Interactions/mitkInteractionEventHandler.cpp Interactions/mitkEventMapper.cpp Interactions/mitkEventStateMachine.cpp Interactions/mitkGlobalInteraction.cpp Interactions/mitkInteractor.cpp Interactions/mitkInternalEvent.cpp Interactions/mitkInteractionEvent.cpp Interactions/mitkInteractionEventConst.cpp Interactions/mitkInteractionPositionEvent.cpp Interactions/mitkInteractionKeyEvent.cpp Interactions/mitkMousePressEvent.cpp Interactions/mitkMouseMoveEvent.cpp Interactions/mitkMouseReleaseEvent.cpp Interactions/mitkMouseWheelEvent.cpp Interactions/mitkMouseModeSwitcher.cpp Interactions/mitkMouseMovePointSetInteractor.cpp Interactions/mitkMoveBaseDataInteractor.cpp Interactions/mitkNodeDepententPointSetInteractor.cpp Interactions/mitkPointSetDataInteractor.cpp Interactions/mitkPointSetInteractor.cpp Interactions/mitkPositionEvent.cpp Interactions/mitkPositionTracker.cpp Interactions/mitkStateMachineAction.cpp Interactions/mitkStateMachineState.cpp Interactions/mitkStateMachineTransition.cpp Interactions/mitkState.cpp Interactions/mitkStateMachineContainer.cpp Interactions/mitkStateEvent.cpp Interactions/mitkStateMachine.cpp Interactions/mitkStateMachineFactory.cpp Interactions/mitkTransition.cpp Interactions/mitkWheelEvent.cpp Interactions/mitkKeyEvent.cpp Interactions/mitkVtkEventAdapter.cpp Interactions/mitkVtkInteractorStyle.cxx Interactions/mitkCrosshairPositionEvent.cpp Interfaces/mitkInteractionEventObserver.cpp Interfaces/mitkIShaderRepository.cpp IO/mitkBaseDataIOFactory.cpp IO/mitkCoreDataNodeReader.cpp IO/mitkDicomSeriesReader.cpp IO/mitkFileReader.cpp IO/mitkFileSeriesReader.cpp IO/mitkFileWriter.cpp #IO/mitkIpPicGet.c IO/mitkImageGenerator.cpp IO/mitkImageWriter.cpp IO/mitkImageWriterFactory.cpp IO/mitkItkImageFileIOFactory.cpp IO/mitkItkImageFileReader.cpp IO/mitkItkLoggingAdapter.cpp IO/mitkItkPictureWrite.cpp IO/mitkIOUtil.cpp IO/mitkLookupTableProperty.cpp IO/mitkOperation.cpp #IO/mitkPicFileIOFactory.cpp #IO/mitkPicFileReader.cpp #IO/mitkPicFileWriter.cpp #IO/mitkPicHelper.cpp #IO/mitkPicVolumeTimeSeriesIOFactory.cpp #IO/mitkPicVolumeTimeSeriesReader.cpp IO/mitkPixelType.cpp IO/mitkPointSetIOFactory.cpp IO/mitkPointSetReader.cpp IO/mitkPointSetWriter.cpp IO/mitkPointSetWriterFactory.cpp IO/mitkRawImageFileReader.cpp IO/mitkStandardFileLocations.cpp IO/mitkSTLFileIOFactory.cpp IO/mitkSTLFileReader.cpp IO/mitkSurfaceVtkWriter.cpp IO/mitkSurfaceVtkWriterFactory.cpp IO/mitkVtkLoggingAdapter.cpp IO/mitkVtiFileIOFactory.cpp IO/mitkVtiFileReader.cpp IO/mitkVtkImageIOFactory.cpp IO/mitkVtkImageReader.cpp IO/mitkVtkSurfaceIOFactory.cpp IO/mitkVtkSurfaceReader.cpp IO/vtkPointSetXMLParser.cpp IO/mitkLog.cpp Rendering/mitkBaseRenderer.cpp Rendering/mitkVtkMapper.cpp Rendering/mitkRenderWindowFrame.cpp Rendering/mitkGeometry2DDataMapper2D.cpp Rendering/mitkGeometry2DDataVtkMapper3D.cpp Rendering/mitkGLMapper.cpp Rendering/mitkGradientBackground.cpp Rendering/mitkManufacturerLogo.cpp Rendering/mitkMapper.cpp Rendering/mitkPointSetGLMapper2D.cpp Rendering/mitkPointSetVtkMapper3D.cpp Rendering/mitkPolyDataGLMapper2D.cpp Rendering/mitkSurfaceGLMapper2D.cpp Rendering/mitkSurfaceVtkMapper3D.cpp Rendering/mitkVolumeDataVtkMapper3D.cpp Rendering/mitkVtkPropRenderer.cpp Rendering/mitkVtkWidgetRendering.cpp Rendering/vtkMitkRectangleProp.cpp Rendering/vtkMitkRenderProp.cpp Rendering/mitkVtkEventProvider.cpp Rendering/mitkRenderWindow.cpp Rendering/mitkRenderWindowBase.cpp Rendering/mitkShaderRepository.cpp Rendering/mitkImageVtkMapper2D.cpp Rendering/vtkMitkThickSlicesFilter.cpp Rendering/vtkMitkLevelWindowFilter.cpp Rendering/vtkNeverTranslucentTexture.cpp Rendering/mitkRenderingTestHelper.cpp Common/mitkException.cpp Common/mitkCommon.h Common/mitkCoreObjectFactoryBase.cpp Common/mitkCoreObjectFactory.cpp Common/mitkCoreServices.cpp ) list(APPEND CPP_FILES ${CppMicroServices_SOURCES}) set(RESOURCE_FILES Interactions/globalConfig.xml Interactions/DisplayInteraction.xml Interactions/DisplayConfig.xml Interactions/DisplayConfigPACS.xml Interactions/DisplayConfigPACSPan.xml Interactions/DisplayConfigPACSScroll.xml Interactions/DisplayConfigPACSZoom.xml Interactions/DisplayConfigPACSLevelWindow.xml Interactions/DisplayConfigMITK.xml Interactions/PointSet.xml Interactions/Legacy/StateMachine.xml Interactions/Legacy/DisplayConfigMITKTools.xml Interactions/PointSetConfig.xml Shaders/mitkShaderLighting.xml mitkLevelWindowPresets.xml )