diff --git a/Core/Code/Algorithms/mitkBilateralFilter.cpp b/Core/Code/Algorithms/mitkBilateralFilter.cpp new file mode 100644 index 0000000000..0b17ac997c --- /dev/null +++ b/Core/Code/Algorithms/mitkBilateralFilter.cpp @@ -0,0 +1,83 @@ +/*========================================================================= +Copyright (c) German Cancer Research Center, Division of Medical and +Biological Informatics. All rights reserved. +See MITKCopyright.txt or http://www.mitk.org/copyright.html for details. + +This software is distributed WITHOUT ANY WARRANTY; without even +the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR +PURPOSE. See the above copyright notices for more information. + +=========================================================================*/ + +#include "mitkBilateralFilter.h" +#include +#include "mitkImageAccessByItk.h" +#include "mitkITKImageImport.h" + +mitk::BilateralFilter::BilateralFilter() + : m_DomainSigma(2.0f), m_RangeSigma(50.0f), m_AutoKernel(true), m_KernelRadius(1u) +{ + //default parameters DomainSigma: 2 , RangeSigma: 50, AutoKernel: true, KernelRadius: 1 +} + +mitk::BilateralFilter::~BilateralFilter() +{ +} + +void mitk::BilateralFilter::GenerateData() +{ + mitk::Image::ConstPointer inputImage = this->GetInput(0); + if ( (inputImage->GetDimension() > 4) || (inputImage->GetDimension() < 2) ) + { + MITK_ERROR << "mitk::BilateralFilter:GenerateData works only with 2D, 2D+t, 3D, 3D+t and 4D images, sorry." << std::endl; + itkExceptionMacro("mitk::BilateralFilter:GenerateData works only with 2D, 2D+t, 3D, 3D+t and 4D images, sorry."); + return; + } + switch(inputImage->GetDimension()) + { + case 2: + { + AccessFixedDimensionByItk( inputImage.GetPointer(), ItkImageProcessing, 2 ); break; + } + case 3: + { + AccessFixedDimensionByItk( inputImage.GetPointer(), ItkImageProcessing, 3 ); break; + } + case 4: + { + AccessFixedDimensionByItk( inputImage.GetPointer(), ItkImageProcessing, 4 ); break; + } + default: break; + } +} + +template +void mitk::BilateralFilter::ItkImageProcessing( itk::Image* itkImage ) +{ + //ITK Image type given from the input image + typedef itk::Image< TPixel, VImageDimension > ItkImageType; + //bilateral filter with same type + typedef itk::BilateralImageFilter BilateralFilterType; + typename BilateralFilterType::Pointer bilateralFilter = BilateralFilterType::New(); + bilateralFilter->SetInput(itkImage); + //set parameters + if(!m_AutoKernel){ + bilateralFilter->SetAutomaticKernelSize(m_AutoKernel); + bilateralFilter->SetRadius(m_KernelRadius); + } + bilateralFilter->SetDomainSigma(m_DomainSigma); + bilateralFilter->SetRangeSigma(m_RangeSigma); + bilateralFilter->UpdateLargestPossibleRegion(); + //get Pointer to output image + mitk::Image::Pointer resultImage = this->GetOutput(); + //write into output image + mitk::CastToMitkImage(bilateralFilter->GetOutput(), resultImage); +} + +void mitk::BilateralFilter::GenerateOutputInformation() +{ + mitk::Image::Pointer inputImage = (mitk::Image*) this->GetInput(); + mitk::Image::Pointer output = this->GetOutput(); + itkDebugMacro(<<"GenerateOutputInformation()"); + if(inputImage.IsNull()) return; +} diff --git a/Core/Code/Algorithms/mitkBilateralFilter.h b/Core/Code/Algorithms/mitkBilateralFilter.h new file mode 100644 index 0000000000..e6cd48309e --- /dev/null +++ b/Core/Code/Algorithms/mitkBilateralFilter.h @@ -0,0 +1,79 @@ +/*========================================================================= + +Program: Medical Imaging & Interaction Toolkit +Module: $RCSfile$ +Language: C++ +Date: $Date$ +Version: $Revision$ + +Copyright (c) German Cancer Research Center, Division of Medical and +Biological Informatics. All rights reserved. +See MITKCopyright.txt or http://www.mitk.org/copyright.html for details. + +This software is distributed WITHOUT ANY WARRANTY; without even +the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR +PURPOSE. See the above copyright notices for more information. + +=========================================================================*/ +#ifndef __mitkBilateralFilter_h +#define __mitkBilateralFilter_h + +//MITK +#include +#include "mitkImageToImageFilter.h" + +#include + +namespace mitk +{ + + class MITK_CORE_EXPORT BilateralFilter : public ImageToImageFilter + { + public: + + mitkClassMacro( BilateralFilter , ImageToImageFilter ); + itkNewMacro( Self ); + + itkSetMacro(DomainSigma,float); + itkSetMacro(RangeSigma,float); + itkSetMacro(AutoKernel,bool); + itkSetMacro(KernelRadius,unsigned int); + + itkGetMacro(DomainSigma,float); + itkGetMacro(RangeSigma,float); + itkGetMacro(AutoKernel,bool); + itkGetMacro(KernelRadius,unsigned int); + + protected: + /*! + \brief standard constructor + */ + BilateralFilter(); + /*! + \brief standard destructor + */ + ~BilateralFilter(); + /*! + \brief Method generating the output information of this filter (e.g. image dimension, image type, etc.). + The interface ImageToImageFilter requires this implementation. Everything is taken from the input image. + */ + virtual void GenerateOutputInformation(); + /*! + \brief Method generating the output of this filter. Called in the updated process of the pipeline. + This method generates the smoothed output image. + */ + virtual void GenerateData(); + + /*! + \brief Internal templated method calling the ITK bilteral filter. Here the actual filtering is performed. + */ + template + void ItkImageProcessing( itk::Image* itkImage ); + + float m_DomainSigma; ///Sigma of the gaussian kernel. See ITK docu + float m_RangeSigma; ///Sigma of the range mask kernel. See ITK docu + bool m_AutoKernel; //true: kernel size is calculated from DomainSigma. See ITK Doc; false: set by m_KernelRadius + unsigned int m_KernelRadius; //use in combination with m_AutoKernel = true + }; +} //END mitk namespace +#endif diff --git a/Core/Code/files.cmake b/Core/Code/files.cmake index b17a9bd424..8efff5eebe 100644 --- a/Core/Code/files.cmake +++ b/Core/Code/files.cmake @@ -1,324 +1,326 @@ SET(H_FILES Algorithms/itkImportMitkImageContainer.h Algorithms/itkImportMitkImageContainer.txx Algorithms/itkLocalVariationImageFilter.h Algorithms/itkLocalVariationImageFilter.txx Algorithms/itkMITKScalarImageToHistogramGenerator.h Algorithms/itkMITKScalarImageToHistogramGenerator.txx Algorithms/itkTotalVariationDenoisingImageFilter.h Algorithms/itkTotalVariationDenoisingImageFilter.txx Algorithms/itkTotalVariationSingleIterationImageFilter.h Algorithms/itkTotalVariationSingleIterationImageFilter.txx + Algorithms/mitkBilateralFilter.h + Algorithms/mitkBilateralFilter.cpp Algorithms/mitkImageAccessByItk.h Algorithms/mitkImageCast.h Algorithms/mitkImageToItk.h Algorithms/mitkImageToItk.txx Algorithms/mitkInstantiateAccessFunctions.h Algorithms/mitkITKImageImport.h Algorithms/mitkITKImageImport.txx Algorithms/mitkPixelTypeList.h # Preprocessor macros taken from Boost Algorithms/mitkPPArithmeticDec.h Algorithms/mitkPPArgCount.h Algorithms/mitkPPCat.h Algorithms/mitkPPConfig.h Algorithms/mitkPPControlExprIIf.h Algorithms/mitkPPControlIf.h Algorithms/mitkPPControlIIf.h Algorithms/mitkPPDebugError.h Algorithms/mitkPPDetailAutoRec.h Algorithms/mitkPPDetailDMCAutoRec.h Algorithms/mitkPPExpand.h Algorithms/mitkPPFacilitiesEmpty.h Algorithms/mitkPPFacilitiesExpand.h Algorithms/mitkPPLogicalBool.h Algorithms/mitkPPRepetitionDetailDMCFor.h Algorithms/mitkPPRepetitionDetailEDGFor.h Algorithms/mitkPPRepetitionDetailFor.h Algorithms/mitkPPRepetitionDetailMSVCFor.h Algorithms/mitkPPRepetitionFor.h Algorithms/mitkPPSeqElem.h Algorithms/mitkPPSeqForEach.h Algorithms/mitkPPSeqForEachProduct.h Algorithms/mitkPPSeq.h Algorithms/mitkPPSeqEnum.h Algorithms/mitkPPSeqSize.h Algorithms/mitkPPSeqToTuple.h Algorithms/mitkPPStringize.h Algorithms/mitkPPTupleEat.h Algorithms/mitkPPTupleElem.h Algorithms/mitkPPTupleRem.h Algorithms/mitkClippedSurfaceBoundsCalculator.h DataManagement/mitkCommon.h Interactions/mitkEventMapperAddOn.h Service/mitkAny.h Service/mitkGetModuleContext.h Service/mitkItkHashMap.h Service/mitkItkHashSet.h Service/mitkItkHashTable.h Service/mitkModuleAbstractTracked.h Service/mitkModuleAbstractTracked.tpp Service/mitkModuleActivator.h Service/mitkServiceFactory.h Service/mitkServiceTracker.h Service/mitkServiceTracker.tpp Service/mitkServiceTrackerCustomizer.h Service/mitkServiceTrackerPrivate.h Service/mitkServiceTrackerPrivate.tpp Service/mitkServiceUtils.h Service/mitkSharedData.h Service/mitkStaticInit.h Service/mitkTrackedService.h Service/mitkTrackedService.tpp Service/mitkTrackedServiceListener.h ) SET(CPP_FILES Algorithms/mitkBaseDataSource.cpp Algorithms/mitkBaseProcess.cpp Algorithms/mitkCoreObjectFactoryBase.cpp Algorithms/mitkCoreObjectFactory.cpp Algorithms/mitkDataNodeFactory.cpp Algorithms/mitkDataNodeSource.cpp Algorithms/mitkGeometry2DDataToSurfaceFilter.cpp Algorithms/mitkHistogramGenerator.cpp Algorithms/mitkImageCaster.cpp Algorithms/mitkImageCastPart1.cpp Algorithms/mitkImageCastPart2.cpp Algorithms/mitkImageCastPart3.cpp Algorithms/mitkImageCastPart4.cpp Algorithms/mitkImageChannelSelector.cpp Algorithms/mitkImageSliceSelector.cpp Algorithms/mitkImageSource.cpp Algorithms/mitkImageTimeSelector.cpp Algorithms/mitkImageToImageFilter.cpp Algorithms/mitkPointSetSource.cpp Algorithms/mitkPointSetToPointSetFilter.cpp Algorithms/mitkRGBToRGBACastImageFilter.cpp Algorithms/mitkSubImageSelector.cpp Algorithms/mitkSurfaceSource.cpp Algorithms/mitkSurfaceToSurfaceFilter.cpp Algorithms/mitkUIDGenerator.cpp Algorithms/mitkVolumeCalculator.cpp Algorithms/mitkClippedSurfaceBoundsCalculator.cpp Controllers/mitkBaseController.cpp Controllers/mitkCallbackFromGUIThread.cpp Controllers/mitkCameraController.cpp Controllers/mitkCameraRotationController.cpp Controllers/mitkFocusManager.cpp Controllers/mitkLimitedLinearUndo.cpp Controllers/mitkOperationEvent.cpp Controllers/mitkProgressBar.cpp Controllers/mitkRenderingManager.cpp Controllers/mitkSliceNavigationController.cpp Controllers/mitkSlicesCoordinator.cpp Controllers/mitkSlicesRotator.cpp Controllers/mitkSlicesSwiveller.cpp Controllers/mitkStatusBar.cpp Controllers/mitkStepper.cpp Controllers/mitkTestManager.cpp Controllers/mitkUndoController.cpp Controllers/mitkVerboseLimitedLinearUndo.cpp Controllers/mitkVtkInteractorCameraController.cpp Controllers/mitkVtkLayerController.cpp DataManagement/mitkAbstractTransformGeometry.cpp DataManagement/mitkAnnotationProperty.cpp DataManagement/mitkApplicationCursor.cpp DataManagement/mitkBaseData.cpp DataManagement/mitkBaseProperty.cpp DataManagement/mitkClippingProperty.cpp DataManagement/mitkColorProperty.cpp DataManagement/mitkDataStorage.cpp #DataManagement/mitkDataTree.cpp DataManagement/mitkDataNode.cpp #DataManagement/mitkDataTreeStorage.cpp DataManagement/mitkDisplayGeometry.cpp DataManagement/mitkEnumerationProperty.cpp DataManagement/mitkGeometry2D.cpp DataManagement/mitkGeometry2DData.cpp DataManagement/mitkGeometry3D.cpp DataManagement/mitkGeometryData.cpp DataManagement/mitkGroupTagProperty.cpp DataManagement/mitkImage.cpp DataManagement/mitkImageDataItem.cpp DataManagement/mitkLandmarkBasedCurvedGeometry.cpp DataManagement/mitkLandmarkProjectorBasedCurvedGeometry.cpp DataManagement/mitkLandmarkProjector.cpp DataManagement/mitkLevelWindow.cpp DataManagement/mitkLevelWindowManager.cpp DataManagement/mitkLevelWindowPreset.cpp DataManagement/mitkLevelWindowProperty.cpp DataManagement/mitkLookupTable.cpp DataManagement/mitkLookupTables.cpp # specializations of GenericLookupTable DataManagement/mitkMemoryUtilities.cpp DataManagement/mitkModalityProperty.cpp DataManagement/mitkModeOperation.cpp DataManagement/mitkNodePredicateAnd.cpp DataManagement/mitkNodePredicateBase.cpp DataManagement/mitkNodePredicateCompositeBase.cpp DataManagement/mitkNodePredicateData.cpp DataManagement/mitkNodePredicateDataType.cpp DataManagement/mitkNodePredicateDimension.cpp DataManagement/mitkNodePredicateFirstLevel.cpp DataManagement/mitkNodePredicateNot.cpp DataManagement/mitkNodePredicateOr.cpp DataManagement/mitkNodePredicateProperty.cpp DataManagement/mitkNodePredicateSource.cpp DataManagement/mitkPlaneOrientationProperty.cpp DataManagement/mitkPlaneGeometry.cpp DataManagement/mitkPlaneOperation.cpp DataManagement/mitkPointOperation.cpp DataManagement/mitkPointSet.cpp DataManagement/mitkProperties.cpp DataManagement/mitkPropertyList.cpp DataManagement/mitkRotationOperation.cpp DataManagement/mitkSlicedData.cpp DataManagement/mitkSlicedGeometry3D.cpp DataManagement/mitkSmartPointerProperty.cpp DataManagement/mitkStandaloneDataStorage.cpp DataManagement/mitkStateTransitionOperation.cpp DataManagement/mitkStringProperty.cpp DataManagement/mitkSurface.cpp DataManagement/mitkSurfaceOperation.cpp DataManagement/mitkThinPlateSplineCurvedGeometry.cpp DataManagement/mitkTimeSlicedGeometry.cpp DataManagement/mitkTransferFunction.cpp DataManagement/mitkTransferFunctionInitializer.cpp DataManagement/mitkVector.cpp DataManagement/mitkVtkInterpolationProperty.cpp DataManagement/mitkVtkRepresentationProperty.cpp DataManagement/mitkVtkResliceInterpolationProperty.cpp DataManagement/mitkVtkScalarModeProperty.cpp DataManagement/mitkVtkVolumeRenderingProperty.cpp DataManagement/mitkWeakPointerProperty.cpp DataManagement/mitkShaderProperty.cpp DataManagement/mitkResliceMethodProperty.cpp DataManagement/mitkMaterial.cpp Interactions/mitkAction.cpp Interactions/mitkAffineInteractor.cpp Interactions/mitkCoordinateSupplier.cpp Interactions/mitkDisplayCoordinateOperation.cpp Interactions/mitkDisplayInteractor.cpp Interactions/mitkDisplayPositionEvent.cpp Interactions/mitkDisplayVectorInteractor.cpp Interactions/mitkDisplayVectorInteractorLevelWindow.cpp Interactions/mitkDisplayVectorInteractorScroll.cpp Interactions/mitkEvent.cpp Interactions/mitkEventDescription.cpp Interactions/mitkEventMapper.cpp Interactions/mitkGlobalInteraction.cpp Interactions/mitkInteractor.cpp Interactions/mitkMouseMovePointSetInteractor.cpp Interactions/mitkMoveSurfaceInteractor.cpp Interactions/mitkNodeDepententPointSetInteractor.cpp Interactions/mitkPointSetInteractor.cpp Interactions/mitkPositionEvent.cpp Interactions/mitkPositionTracker.cpp Interactions/mitkState.cpp Interactions/mitkStateEvent.cpp Interactions/mitkStateMachine.cpp Interactions/mitkStateMachineFactory.cpp Interactions/mitkTransition.cpp Interactions/mitkWheelEvent.cpp Interactions/mitkKeyEvent.cpp Interactions/mitkVtkEventAdapter.cpp Interactions/mitkCrosshairPositionEvent.cpp IO/mitkBaseDataIOFactory.cpp IO/mitkDicomSeriesReader.cpp IO/mitkFileReader.cpp IO/mitkFileSeriesReader.cpp IO/mitkFileWriter.cpp IO/mitkIpPicGet.c IO/mitkImageGenerator.cpp IO/mitkImageWriter.cpp IO/mitkImageWriterFactory.cpp IO/mitkItkImageFileIOFactory.cpp IO/mitkItkImageFileReader.cpp IO/mitkItkPictureWrite.cpp IO/mitkLookupTableProperty.cpp IO/mitkOperation.cpp IO/mitkPicFileIOFactory.cpp IO/mitkPicFileReader.cpp IO/mitkPicFileWriter.cpp IO/mitkPicHelper.cpp IO/mitkPicVolumeTimeSeriesIOFactory.cpp IO/mitkPicVolumeTimeSeriesReader.cpp IO/mitkPixelType.cpp IO/mitkPointSetIOFactory.cpp IO/mitkPointSetReader.cpp IO/mitkPointSetWriter.cpp IO/mitkPointSetWriterFactory.cpp IO/mitkRawImageFileReader.cpp IO/mitkStandardFileLocations.cpp IO/mitkSTLFileIOFactory.cpp IO/mitkSTLFileReader.cpp IO/mitkSurfaceVtkWriter.cpp IO/mitkSurfaceVtkWriterFactory.cpp IO/mitkVtiFileIOFactory.cpp IO/mitkVtiFileReader.cpp IO/mitkVtkImageIOFactory.cpp IO/mitkVtkImageReader.cpp IO/mitkVtkSurfaceIOFactory.cpp IO/mitkVtkSurfaceReader.cpp IO/vtkPointSetXMLParser.cpp IO/mitkLog.cpp Rendering/mitkBaseRenderer.cpp Rendering/mitkVtkMapper2D.cpp Rendering/mitkVtkMapper3D.cpp Rendering/mitkRenderWindowFrame.cpp Rendering/mitkGeometry2DDataMapper2D.cpp Rendering/mitkGeometry2DDataVtkMapper3D.cpp Rendering/mitkGLMapper2D.cpp Rendering/mitkGradientBackground.cpp Rendering/mitkManufacturerLogo.cpp Rendering/mitkMapper2D.cpp Rendering/mitkMapper3D.cpp Rendering/mitkMapper.cpp Rendering/mitkPointSetGLMapper2D.cpp Rendering/mitkPointSetVtkMapper3D.cpp Rendering/mitkPolyDataGLMapper2D.cpp Rendering/mitkSurfaceGLMapper2D.cpp Rendering/mitkSurfaceVtkMapper3D.cpp Rendering/mitkVolumeDataVtkMapper3D.cpp Rendering/mitkVtkPropRenderer.cpp Rendering/mitkVtkWidgetRendering.cpp Rendering/vtkMitkRectangleProp.cpp Rendering/vtkMitkRenderProp.cpp Rendering/mitkVtkEventProvider.cpp Rendering/mitkRenderWindow.cpp Rendering/mitkRenderWindowBase.cpp Rendering/mitkShaderRepository.cpp Rendering/mitkImageVtkMapper2D.cpp Rendering/vtkMitkThickSlicesFilter.cpp Rendering/vtkMitkApplyLevelWindowToRGBFilter.cpp Service/mitkAny.cpp Service/mitkAtomicInt.cpp Service/mitkCoreActivator.cpp Service/mitkCoreModuleContext.cpp Service/mitkModule.cpp Service/mitkModuleContext.cpp Service/mitkModuleEvent.cpp Service/mitkModuleInfo.cpp Service/mitkModulePrivate.cpp Service/mitkModuleRegistry.cpp Service/mitkModuleUtils.cpp Service/mitkModuleVersion.cpp Service/mitkLDAPExpr.cpp Service/mitkLDAPFilter.cpp Service/mitkServiceEvent.cpp Service/mitkServiceException.cpp Service/mitkServiceListenerEntry.cpp Service/mitkServiceListeners.cpp Service/mitkServiceProperties.cpp Service/mitkServiceReference.cpp Service/mitkServiceReferencePrivate.cpp Service/mitkServiceRegistration.cpp Service/mitkServiceRegistrationPrivate.cpp Service/mitkServiceRegistry.cpp )