Diffusion MITK 5b0c1ae43f3d

Total Segmentator tool: support for all subtasks
5b0c1ae43f3d
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Description

Total Segmentator tool: support for all subtasks

Summary: New reader for agglomerating individual image masks & Full substasks support in totalsegmentator

Test Plan: NA

Reviewers: floca, kislinsk, O1 MITK Reviewer Group I

Reviewed By: floca, O1 MITK Reviewer Group I

Maniphest Tasks: T29497

Differential Revision: https://phabricator.mitk.org/D792

Details

Provenance

a178n	Authored on Apr 28 2023, 10:15 AM
a178n	Pushed on Apr 28 2023, 2:05 PM

Reviewer

O1: MITK Reviewer Group I

Differential Revision

Restricted Differential Revision

Parents

rMITK344c3bffb6c3: Merge branch 'feature/T29519-ReduceVerticalSpaceOccupied' into develop
rMITKa8b995f4c4a2: Minor code updates

Branches

Unknown

Tags

Unknown

Tasks

T29497: Full support for all subtasks

Event Timeline

a178n committed rMITK5b0c1ae43f3d: Total Segmentator tool: support for all subtasks (authored by a178n).Apr 28 2023, 2:05 PM

a178n added a task: T29497: Full support for all subtasks.

a178n added an edge: Restricted Differential Revision.

kislinsk mentioned this in T29565: 2023 Week 18 (Very Early May).May 4 2023, 3:02 PM

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

a8b995f4c4a2 Minor code updates
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a178n
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e0ca275f4bc7 Code refactoring changes
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a178n
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99762f8969b6 Merge branch 'develop' into feature/T29497-totalseg-subtasks-support
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a178n
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bdf3c12e8851 Totalsegmentator support version upgraded to 1.5.5
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a178n
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a614f665c40b Minor bugfixes
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d5ff8493130c Code refactoring changes: No more reference semantics
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25f1a2ec9f05 Pointer to reference semantics
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d52b8fdbadb6 Code update
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ac4b004a39a6 Add colour to agglomorated label
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16385a3c450c New reader for agglomerating individual image masks & Full substasks support in…
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a178n
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fbaeda727e93 Merge remote-tracking branch 'origin/feature/T29468-totalsegmentator-install'…
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7668b1a19fcf Code refactoring changes
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dd76ecd846bf Minor UI updates
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6c0bfb2b398e Update intro text
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547aedfaf516 "/usr/bin" set default for sys python Linux & Mac
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a178n
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955ae0a53430 Merge branch 'develop' into feature/T29468-totalsegmentator-install
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a178n
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aafb62d5aeff Avoid empty value retrieve from QSettings cache
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90650addfbc4 Minor UI & status text update
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932e09d31e28 Merge branch 'develop' into feature/T29468-totalsegmentator-install
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adde7692fc58 macOS specfic changes
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06c46f2582c0 Adding code documentation
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d04d85a5b278 Overall non functional aesthetic changes
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ac468c4ce88d bugfix
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66dd253ba0b8 UI text update & ubuntu build fix
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405a12ec0235 Bugfix: "Select" option for system python works properly now
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776c43e29a03 Bugfix and other code refactoring changes
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8a1c60b4ca92 Add "Clear Install" button to remove pre installed virtual environments
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90b2866a4612 Ubuntu minor bug fix
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5bdf73d8a429 Install options as separate collapsible box
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755b6c5b4774 Installer code redesign
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3d191bf895aa Rename UI elements & minor code changes
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2a4bf19d04fa Adding option for Users to override MITK installed venv
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0a2567bc8f18 Code & UI restructuring updates
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a679ddcdcda5 Pytorch can be accurately installed with CUDA on Windows
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8b879d929b7e Code restructing allowing for flexible callbacks
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c4753cea9cee Python env combo not visible anymore to user
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093b81db577b Update lamda to static function pointer
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c351a7bd6af4 Adding new class to install virtual environment
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01806afe5980 pip install scikit-image after Totalsegmentator install
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eba456391c05 Bugfix changes
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ef5d3403bf0f Code update
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a003e6dca372 Code restructuring changes
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de3c797425c7 Introducing install button for TotalSegmentator
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693fba4a40c8 Virtual environment creation (Ubuntu) changes
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5887a1d837af initial commit
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a4823a8122be Merge branch 'feature/T29458-totalsegmentator-advanced' into feature/T29468…
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5c12472666c9 Code cleanup
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16d3e1875fa5 Adding TotalSegmentator entry
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703f9b08594e Documentation updates
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5bd3af87ffea Label names parsing from map_to_binary.py also in Ubuntu
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Changes (12)

Path

Size

Packages

Modules/

Segmentation/

Interactions/

mitkTotalSegmentatorTool.cpp

O1: MITK Reviewer Group I

mitkTotalSegmentatorTool.h

O1: MITK Reviewer Group I

files.cmake

O1: MITK Reviewer Group I

SegmentationUI/

Qmitk/

QmitkSetupVirtualEnvUtil.cpp

O1: MITK Reviewer Group I

QmitkSetupVirtualEnvUtil.h

O1: MITK Reviewer Group I

QmitkTotalSegmentatorGUIControls.ui

O1: MITK Reviewer Group I

QmitkTotalSegmentatorToolGUI.cpp

O1: MITK Reviewer Group I

QmitkTotalSegmentatorToolGUI.h

O1: MITK Reviewer Group I

QmitknnUNetGPU.cpp

O1: MITK Reviewer Group I

QmitknnUNetGPU.h

O1: MITK Reviewer Group I

files.cmake

O1: MITK Reviewer Group I

Plugins/

org.mitk.gui.qt.segmentation/

src/

internal/

QmitkSegmentationView.cpp

O1: MITK Reviewer Group I

rMITK5b0c1ae43f3d

View Options

Modules/Segmentation/Interactions/mitkTotalSegmentatorTool.cpp

View Options

Modules/Segmentation/Interactions/mitkTotalSegmentatorTool.h

View Options

Modules/Segmentation/files.cmake

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Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.cpp

View Options

Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.h

View Options

Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorGUIControls.ui

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Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.cpp

View Options

Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.h

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Modules/SegmentationUI/Qmitk/QmitknnUNetGPU.cpp

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Modules/SegmentationUI/Qmitk/QmitknnUNetGPU.h

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Modules/SegmentationUI/files.cmake

View Options

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp

Total Segmentator tool: support for all subtasks5b0c1ae43f3dActions

Description

Details

Event Timeline

Merged Changes

Changes (12)

rMITK5b0c1ae43f3d

Modules/Segmentation/Interactions/mitkTotalSegmentatorTool.cpp

Modules/Segmentation/Interactions/mitkTotalSegmentatorTool.h

Modules/Segmentation/files.cmake

Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.cpp

Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.h

Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorGUIControls.ui

Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.cpp

Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.h

Modules/SegmentationUI/Qmitk/QmitknnUNetGPU.cpp

Modules/SegmentationUI/Qmitk/QmitknnUNetGPU.h

Modules/SegmentationUI/files.cmake

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp

Total Segmentator tool: support for all subtasks
5b0c1ae43f3d
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