diff --git a/Modules/SegmentationUI/Qmitk/QmitkMultiLabelTreeModel.cpp b/Modules/SegmentationUI/Qmitk/QmitkMultiLabelTreeModel.cpp index 574f44d36f..50ce5a41fa 100644 --- a/Modules/SegmentationUI/Qmitk/QmitkMultiLabelTreeModel.cpp +++ b/Modules/SegmentationUI/Qmitk/QmitkMultiLabelTreeModel.cpp @@ -1,1024 +1,1025 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkMultiLabelTreeModel.h" #include #include #include class QmitkMultiLabelSegTreeItem { public: enum class ItemType { Group, Label, Instance }; QmitkMultiLabelSegTreeItem() { }; explicit QmitkMultiLabelSegTreeItem(ItemType type, QmitkMultiLabelSegTreeItem* parentItem, mitk::Label* label = nullptr, std::string className = ""): m_parentItem(parentItem), m_ItemType(type), m_Label(label), m_ClassName(className) { }; ~QmitkMultiLabelSegTreeItem() { for (auto item : m_childItems) { delete item; } }; void AppendChild(QmitkMultiLabelSegTreeItem* child) { m_childItems.push_back(child); }; void RemoveChild(std::size_t row) { if (row < m_childItems.size()) { delete m_childItems[row]; m_childItems.erase(m_childItems.begin() + row); } }; int Row() const { if (m_parentItem) { auto finding = std::find(m_parentItem->m_childItems.begin(), m_parentItem->m_childItems.end(), this); if (finding != m_parentItem->m_childItems.end()) { return std::distance(m_parentItem->m_childItems.begin(), finding); } } return 0; }; QmitkMultiLabelSegTreeItem* ParentItem() { return m_parentItem; }; const QmitkMultiLabelSegTreeItem* ParentItem() const { return m_parentItem; }; const QmitkMultiLabelSegTreeItem* NextSibblingItem() const { if (m_parentItem) { const std::vector::size_type row = this->Row(); if (row + 1 < m_parentItem->m_childItems.size()) return m_parentItem->m_childItems[row+1]; } return nullptr; }; const QmitkMultiLabelSegTreeItem* PrevSibblingItem() const { if (m_parentItem) { const std::vector::size_type row = this->Row(); if (row > 0) return m_parentItem->m_childItems[row-1]; } return nullptr; }; const QmitkMultiLabelSegTreeItem* RootItem() const { auto item = this; while (item->m_parentItem != nullptr) { item = item->m_parentItem; } return item; }; std::size_t GetGroupID() const { auto root = this->RootItem(); auto item = this; if (root == this) return 0; while (root != item->m_parentItem) { item = item->m_parentItem; } auto iter = std::find(root->m_childItems.begin(), root->m_childItems.end(), item); if (root->m_childItems.end() == iter) mitkThrow() << "Invalid internal state of QmitkMultiLabelTreeModel. Root does not have an currentItem as child that has root as parent."; return std::distance(root->m_childItems.begin(), iter); } bool HandleAsInstance() const { return (ItemType::Instance == m_ItemType) || ((ItemType::Label == m_ItemType) && (m_childItems.size() == 1)); } mitk::Label* GetLabel() const { if (ItemType::Instance == m_ItemType) { return m_Label; } if (ItemType::Label == m_ItemType) { if (m_childItems.empty()) mitkThrow() << "Invalid internal state of QmitkMultiLabelTreeModel. Internal label currentItem has no instance currentItem."; return m_childItems[0]->GetLabel(); } return nullptr; }; mitk::LabelSetImage::LabelValueType GetLabelValue() const { auto label = this->GetLabel(); if (nullptr == label) { mitkThrow() << "Invalid internal state of QmitkMultiLabelTreeModel. Called GetLabelValue on an group currentItem."; } return label->GetValue(); }; /** returns a vector containing all label values of referenced by this item or its child items.*/ std::vector< mitk::LabelSetImage::LabelValueType> GetLabelsInSubTree() const { if (this->m_ItemType == ItemType::Instance) { return { this->GetLabelValue() }; } std::vector< mitk::LabelSetImage::LabelValueType> result; for (const auto child : this->m_childItems) { auto childresult = child->GetLabelsInSubTree(); result.reserve(result.size() + childresult.size()); result.insert(result.end(), childresult.begin(), childresult.end()); } return result; } std::vector m_childItems; QmitkMultiLabelSegTreeItem* m_parentItem = nullptr; ItemType m_ItemType = ItemType::Group; mitk::Label::Pointer m_Label; std::string m_ClassName; }; QModelIndex GetIndexByItem(const QmitkMultiLabelSegTreeItem* start, const QmitkMultiLabelTreeModel* model) { QModelIndex parentIndex = QModelIndex(); if (nullptr != start->m_parentItem) { parentIndex = GetIndexByItem(start->m_parentItem, model); } else { return parentIndex; } return model->index(start->Row(), 0, parentIndex); } QmitkMultiLabelSegTreeItem* GetGroupItem(QmitkMultiLabelTreeModel::GroupIndexType groupIndex, QmitkMultiLabelSegTreeItem* root) { if (nullptr != root && groupIndex < root->m_childItems.size()) { return root->m_childItems[groupIndex]; } return nullptr; } QmitkMultiLabelSegTreeItem* GetInstanceItem(QmitkMultiLabelTreeModel::LabelValueType labelValue, QmitkMultiLabelSegTreeItem* root) { QmitkMultiLabelSegTreeItem* result = nullptr; for (auto item : root->m_childItems) { result = GetInstanceItem(labelValue, item); if (nullptr != result) return result; } if (root->m_ItemType == QmitkMultiLabelSegTreeItem::ItemType::Instance && root->GetLabelValue() == labelValue) { return root; } return nullptr; } const QmitkMultiLabelSegTreeItem* GetFirstInstanceLikeItem(const QmitkMultiLabelSegTreeItem* startItem) { const QmitkMultiLabelSegTreeItem* result = nullptr; if (nullptr != startItem) { if (startItem->HandleAsInstance()) { result = startItem; } else if (!startItem->m_childItems.empty()) { result = GetFirstInstanceLikeItem(startItem->m_childItems.front()); } } return result; } QmitkMultiLabelSegTreeItem* GetLabelItemInGroup(const std::string& labelName, QmitkMultiLabelSegTreeItem* group) { if (nullptr != group) { auto predicate = [labelName](const QmitkMultiLabelSegTreeItem* item) { return labelName == item->m_ClassName; }; auto finding = std::find_if(group->m_childItems.begin(), group->m_childItems.end(), predicate); if (group->m_childItems.end() != finding) { return *finding; } } return nullptr; } QmitkMultiLabelTreeModel::QmitkMultiLabelTreeModel(QObject *parent) : QAbstractItemModel(parent) { m_RootItem = std::make_unique(); } QmitkMultiLabelTreeModel ::~QmitkMultiLabelTreeModel() { this->SetSegmentation(nullptr); }; int QmitkMultiLabelTreeModel::columnCount(const QModelIndex& /*parent*/) const { return 4; } int QmitkMultiLabelTreeModel::rowCount(const QModelIndex &parent) const { if (parent.column() > 0) return 0; if (m_Segmentation.IsNull()) return 0; QmitkMultiLabelSegTreeItem* parentItem = m_RootItem.get(); if (parent.isValid()) parentItem = static_cast(parent.internalPointer()); if (parentItem->HandleAsInstance()) { return 0; } return parentItem->m_childItems.size(); } QVariant QmitkMultiLabelTreeModel::data(const QModelIndex &index, int role) const { if (!index.isValid()) return QVariant(); auto item = static_cast(index.internalPointer()); if (!item) return QVariant(); if (role == Qt::DisplayRole||role == Qt::EditRole) { if (TableColumns::NAME_COL == index.column()) { switch (item->m_ItemType) { case QmitkMultiLabelSegTreeItem::ItemType::Group: return QVariant(QString("Group %1").arg(item->GetGroupID())); case QmitkMultiLabelSegTreeItem::ItemType::Label: { auto label = item->GetLabel(); if (nullptr == label) mitkThrow() << "Invalid internal state. QmitkMultiLabelTreeModel currentItem is refering to a label that does not exist."; QString name = QString::fromStdString(label->GetName()); if (!item->HandleAsInstance()) name = name + QString(" (%1 instances)").arg(item->m_childItems.size()); return QVariant(name); } case QmitkMultiLabelSegTreeItem::ItemType::Instance: { auto label = item->GetLabel(); if (nullptr == label) mitkThrow() << "Invalid internal state. QmitkMultiLabelTreeModel currentItem is refering to a label that does not exist."; return QVariant(QString::fromStdString(label->GetName()) + QString(" [%1]").arg(item->GetLabelValue())); } } } else { if (item->HandleAsInstance()) { auto label = item->GetLabel(); if (TableColumns::LOCKED_COL == index.column()) { return QVariant(label->GetLocked()); } else if (TableColumns::COLOR_COL == index.column()) { return QVariant(QColor(label->GetColor().GetRed() * 255, label->GetColor().GetGreen() * 255, label->GetColor().GetBlue() * 255)); } else if (TableColumns::VISIBLE_COL == index.column()) { return QVariant(label->GetVisible()); } } } } else if (role == ItemModelRole::LabelDataRole) { auto label = item->GetLabel(); if (nullptr!=label) return QVariant::fromValue(label); } else if (role == ItemModelRole::LabelValueRole) { auto label = item->GetLabel(); if (nullptr != label) return QVariant(label->GetValue()); } else if (role == ItemModelRole::LabelInstanceDataRole) { if (item->HandleAsInstance()) { auto label = item->GetLabel(); return QVariant::fromValue(label); } } else if (role == ItemModelRole::LabelInstanceValueRole) { if (item->HandleAsInstance()) { auto label = item->GetLabel(); return QVariant(label->GetValue()); } } else if (role == ItemModelRole::GroupIDRole) { QVariant v; v.setValue(item->GetGroupID()); return v; } return QVariant(); } mitk::Color QtToMitk(const QColor& color) { mitk::Color mitkColor; mitkColor.SetRed(color.red() / 255.0f); mitkColor.SetGreen(color.green() / 255.0f); mitkColor.SetBlue(color.blue() / 255.0f); return mitkColor; } bool QmitkMultiLabelTreeModel::setData(const QModelIndex& index, const QVariant& value, int role) { if (!index.isValid()) return false; auto item = static_cast(index.internalPointer()); if (!item) return false; if (role == Qt::EditRole) { if (TableColumns::NAME_COL != index.column()) { if (item->HandleAsInstance()) { auto label = item->GetLabel(); if (TableColumns::LOCKED_COL == index.column()) { label->SetLocked(value.toBool()); } else if (TableColumns::COLOR_COL == index.column()) { label->SetColor(QtToMitk(value.value())); } else if (TableColumns::VISIBLE_COL == index.column()) { label->SetVisible(value.toBool()); } m_Segmentation->UpdateLookupTable(label->GetValue()); m_Segmentation->Modified(); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } else { } return true; } } return false; } QModelIndex QmitkMultiLabelTreeModel::index(int row, int column, const QModelIndex &parent) const { if (!hasIndex(row, column, parent)) return QModelIndex(); auto parentItem = m_RootItem.get(); if (parent.isValid()) parentItem = static_cast(parent.internalPointer()); QmitkMultiLabelSegTreeItem *childItem = parentItem->m_childItems[row]; if (childItem) return createIndex(row, column, childItem); else return QModelIndex(); } QModelIndex QmitkMultiLabelTreeModel::indexOfLabel(mitk::Label::PixelType labelValue) const { if (labelValue == mitk::LabelSetImage::UNLABELED_VALUE) return QModelIndex(); auto relevantItem = GetInstanceItem(labelValue, this->m_RootItem.get()); if (nullptr == relevantItem) return QModelIndex(); auto labelItem = relevantItem->ParentItem(); if (labelItem->m_childItems.size() == 1) { //was the only instance of the label, therefor return the label item instat. relevantItem = labelItem; } return GetIndexByItem(relevantItem, this); } QModelIndex QmitkMultiLabelTreeModel::indexOfGroup(mitk::LabelSetImage::GroupIndexType groupIndex) const { auto relevantItem = GetGroupItem(groupIndex, this->m_RootItem.get()); if (nullptr == relevantItem) QModelIndex(); return GetIndexByItem(relevantItem, this); } QModelIndex QmitkMultiLabelTreeModel::parent(const QModelIndex &child) const { if (!child.isValid()) return QModelIndex(); QmitkMultiLabelSegTreeItem *childItem = static_cast(child.internalPointer()); QmitkMultiLabelSegTreeItem *parentItem = childItem->ParentItem(); if (parentItem == m_RootItem.get()) return QModelIndex(); return createIndex(parentItem->Row(), 0, parentItem); } QModelIndex QmitkMultiLabelTreeModel::ClosestLabelInstanceIndex(const QModelIndex& currentIndex) const { if (!currentIndex.isValid()) return QModelIndex(); auto currentItem = static_cast(currentIndex.internalPointer()); if (!currentItem) return QModelIndex(); if (currentItem->RootItem() != this->m_RootItem.get()) mitkThrow() << "Invalid call. Passed currentIndex does not seem to be a valid index of this model. It is either outdated or from another model."; const QmitkMultiLabelSegTreeItem* resultItem = nullptr; auto searchItem = currentItem; const auto rootItem = currentItem->RootItem(); while (searchItem != rootItem) { const auto* sibling = searchItem; while (sibling != nullptr) { sibling = sibling->NextSibblingItem(); resultItem = GetFirstInstanceLikeItem(sibling); if (nullptr != resultItem) break; } if (nullptr != resultItem) break; // No next closest label instance on this level -> check for closest before sibling = searchItem; while (sibling != nullptr) { sibling = sibling->PrevSibblingItem(); resultItem = GetFirstInstanceLikeItem(sibling); if (nullptr != resultItem) break; } if (nullptr != resultItem) break; // No closest label instance before current on this level -> moeve one level up searchItem = searchItem->ParentItem(); } if (nullptr == resultItem) return QModelIndex(); return GetIndexByItem(resultItem, this); } QModelIndex QmitkMultiLabelTreeModel::FirstLabelInstanceIndex(const QModelIndex& currentIndex) const { const QmitkMultiLabelSegTreeItem* currentItem = nullptr; if (!currentIndex.isValid()) { currentItem = this->m_RootItem.get(); } else { currentItem = static_cast(currentIndex.internalPointer()); } if (!currentItem) return QModelIndex(); if (currentItem->RootItem() != this->m_RootItem.get()) mitkThrow() << "Invalid call. Passed currentIndex does not seem to be a valid index of this model. It is either outdated or from another model."; const QmitkMultiLabelSegTreeItem* resultItem = nullptr; resultItem = GetFirstInstanceLikeItem(currentItem); if (nullptr == resultItem) return QModelIndex(); return GetIndexByItem(resultItem, this); } ///** Returns the index to the next node in the tree that behaves like an instance (label node with only one instance //or instance node). If current index is at the end, an invalid index is returned.*/ //QModelIndex QmitkMultiLabelTreeModel::PrevLabelInstanceIndex(const QModelIndex& currentIndex) const; std::vector QmitkMultiLabelTreeModel::GetLabelsInSubTree(const QModelIndex& currentIndex) const { const QmitkMultiLabelSegTreeItem* currentItem = nullptr; if (!currentIndex.isValid()) { currentItem = this->m_RootItem.get(); } else { currentItem = static_cast(currentIndex.internalPointer()); } if (!currentItem) return {}; return currentItem->GetLabelsInSubTree(); } std::vector QmitkMultiLabelTreeModel::GetLabelInstancesOfSameLabelClass(const QModelIndex& currentIndex) const { const QmitkMultiLabelSegTreeItem* currentItem = nullptr; if (currentIndex.isValid()) { currentItem = static_cast(currentIndex.internalPointer()); } if (!currentItem) return {}; if (QmitkMultiLabelSegTreeItem::ItemType::Group == currentItem->m_ItemType) return {}; if (QmitkMultiLabelSegTreeItem::ItemType::Instance == currentItem->m_ItemType) currentItem = currentItem->ParentItem(); return currentItem->GetLabelsInSubTree(); } Qt::ItemFlags QmitkMultiLabelTreeModel::flags(const QModelIndex &index) const { if (!index.isValid()) return Qt::NoItemFlags; if (!index.isValid()) return Qt::NoItemFlags; auto item = static_cast(index.internalPointer()); if (!item) return Qt::NoItemFlags; if (TableColumns::NAME_COL != index.column()) { if (item->HandleAsInstance() && ((TableColumns::VISIBLE_COL == index.column() && m_AllowVisibilityModification) || (TableColumns::COLOR_COL == index.column() && m_AllowVisibilityModification) || //m_AllowVisibilityModification controls visibility and color (TableColumns::LOCKED_COL == index.column() && m_AllowLockModification))) { return Qt::ItemIsEnabled | Qt::ItemIsEditable; } else { return Qt::ItemIsEnabled; } } else { if (item->HandleAsInstance()) { return Qt::ItemIsEnabled | Qt::ItemIsSelectable; } else { return Qt::ItemIsEnabled; } } return Qt::NoItemFlags; } QVariant QmitkMultiLabelTreeModel::headerData(int section, Qt::Orientation orientation, int role) const { if ((Qt::DisplayRole == role) && (Qt::Horizontal == orientation)) { if (TableColumns::NAME_COL == section) { return "Name"; } else if (TableColumns::LOCKED_COL == section) { return "Locked"; } else if (TableColumns::COLOR_COL == section) { return "Color"; } else if (TableColumns::VISIBLE_COL == section) { return "Visibility"; } } return QVariant(); } const mitk::LabelSetImage* QmitkMultiLabelTreeModel::GetSegmentation() const { return m_Segmentation; } void QmitkMultiLabelTreeModel::SetSegmentation(mitk::LabelSetImage* segmentation) { if (m_Segmentation != segmentation) { this->m_Segmentation = segmentation; this->AddObserver(); this->UpdateInternalTree(); } } /**Helper function that adds a labek into the item tree. Passes back the new created instance iten*/ QmitkMultiLabelSegTreeItem* AddLabelToGroupTree(mitk::Label* label, QmitkMultiLabelSegTreeItem* groupItem, bool& newLabelItemCreated) { if (nullptr == groupItem) return nullptr; if (nullptr == label) return nullptr; newLabelItemCreated = false; std::set labelNames; for (auto labelItem : groupItem->m_childItems) { labelNames.emplace(labelItem->GetLabel()->GetName()); } QmitkMultiLabelSegTreeItem* labelItem = nullptr; auto finding = labelNames.find(label->GetName()); if (finding != labelNames.end()) { //other label with same name exists labelItem = groupItem->m_childItems[std::distance(labelNames.begin(), finding)]; } else { newLabelItemCreated = true; labelItem = new QmitkMultiLabelSegTreeItem(QmitkMultiLabelSegTreeItem::ItemType::Label, groupItem, nullptr, label->GetName()); auto predicate = [label](const std::string& name) { return name > label->GetName(); }; auto insertFinding = std::find_if(labelNames.begin(), labelNames.end(), predicate); groupItem->m_childItems.insert(groupItem->m_childItems.begin() + std::distance(labelNames.begin(), insertFinding), labelItem); } auto instanceItem = new QmitkMultiLabelSegTreeItem(QmitkMultiLabelSegTreeItem::ItemType::Instance, labelItem, label); auto predicate = [label](const QmitkMultiLabelSegTreeItem* item) { return item->GetLabelValue() > label->GetValue(); }; auto insertFinding = std::find_if(labelItem->m_childItems.begin(), labelItem->m_childItems.end(), predicate); labelItem->m_childItems.insert(labelItem->m_childItems.begin() + std::distance(labelItem->m_childItems.begin(), insertFinding), instanceItem); return instanceItem; } void QmitkMultiLabelTreeModel::GenerateInternalGroupTree(unsigned int groupID, QmitkMultiLabelSegTreeItem* groupItem) { auto labels = m_Segmentation->GetLabelsByValue(m_Segmentation->GetLabelValuesByGroup(groupID)); for (auto& label : labels) { if (label->GetValue()== mitk::LabelSetImage::UNLABELED_VALUE) continue; bool newItemCreated = false; AddLabelToGroupTree(label, groupItem, newItemCreated); } } QmitkMultiLabelSegTreeItem* QmitkMultiLabelTreeModel::GenerateInternalTree() { auto rootItem = new QmitkMultiLabelSegTreeItem(); if (m_Segmentation.IsNotNull()) { for (unsigned int groupID = 0; groupID < m_Segmentation->GetNumberOfLayers(); ++groupID) { auto groupItem = new QmitkMultiLabelSegTreeItem(QmitkMultiLabelSegTreeItem::ItemType::Group, rootItem); rootItem->AppendChild(groupItem); GenerateInternalGroupTree(groupID, groupItem); } } return rootItem; } void QmitkMultiLabelTreeModel::UpdateInternalTree() { emit beginResetModel(); auto newTree = this->GenerateInternalTree(); this->m_RootItem.reset(newTree); emit endResetModel(); emit modelChanged(); } void QmitkMultiLabelTreeModel::ITKEventHandler(const itk::EventObject& e) { if (mitk::LabelAddedEvent().CheckEvent(&e)) { auto labelEvent = dynamic_cast(&e); this->OnLabelAdded(labelEvent->GetLabelValue()); } else if (mitk::LabelModifiedEvent().CheckEvent(&e)) { auto labelEvent = dynamic_cast(&e); this->OnLabelModified(labelEvent->GetLabelValue()); } else if (mitk::LabelRemovedEvent().CheckEvent(&e)) { auto labelEvent = dynamic_cast(&e); this->OnLabelRemoved(labelEvent->GetLabelValue()); } else if (mitk::GroupAddedEvent().CheckEvent(&e)) { auto labelEvent = dynamic_cast(&e); this->OnGroupAdded(labelEvent->GetGroupID()); } else if (mitk::GroupModifiedEvent().CheckEvent(&e)) { auto labelEvent = dynamic_cast(&e); this->OnGroupModified(labelEvent->GetGroupID()); } else if (mitk::GroupRemovedEvent().CheckEvent(&e)) { auto labelEvent = dynamic_cast(&e); this->OnGroupRemoved(labelEvent->GetGroupID()); } } void QmitkMultiLabelTreeModel::AddObserver() { m_LabelAddedObserver.Reset(); m_LabelModifiedObserver.Reset(); m_LabelRemovedObserver.Reset(); m_GroupAddedObserver.Reset(); m_GroupModifiedObserver.Reset(); m_GroupRemovedObserver.Reset(); if (this->m_Segmentation.IsNotNull()) { auto& model = *this; m_LabelAddedObserver.Reset(m_Segmentation, mitk::LabelAddedEvent(), [&model](const itk::EventObject& event){model.ITKEventHandler(event);}); m_LabelModifiedObserver.Reset(m_Segmentation, mitk::LabelModifiedEvent(), [&model](const itk::EventObject& event) {model.ITKEventHandler(event); }); m_LabelRemovedObserver.Reset(m_Segmentation, mitk::LabelRemovedEvent(), [&model](const itk::EventObject& event) {model.ITKEventHandler(event); }); m_GroupAddedObserver.Reset(m_Segmentation, mitk::GroupAddedEvent(), [&model](const itk::EventObject& event) { model.ITKEventHandler(event); }); m_GroupModifiedObserver.Reset(m_Segmentation, mitk::GroupModifiedEvent(), [&model](const itk::EventObject& event) {model.ITKEventHandler(event); }); m_GroupRemovedObserver.Reset(m_Segmentation, mitk::GroupRemovedEvent(), [&model](const itk::EventObject& event) {model.ITKEventHandler(event); }); } } void QmitkMultiLabelTreeModel::OnLabelAdded(LabelValueType labelValue) { GroupIndexType groupIndex = m_Segmentation->GetGroupIndexOfLabel(labelValue); auto label = m_Segmentation->GetLabel(labelValue); if (nullptr == label) mitkThrow() << "Invalid internal state. Segmentation signaled the addition of an label that does not exist in the segmentation. Invalid label value:" << labelValue; if (labelValue == mitk::LabelSetImage::UNLABELED_VALUE) return; auto groupItem = GetGroupItem(groupIndex, this->m_RootItem.get()); bool newLabelCreated = false; auto instanceItem = AddLabelToGroupTree(label, groupItem, newLabelCreated); if (newLabelCreated) { if (groupItem->m_childItems.size() == 1) { //first label added auto groupIndex = GetIndexByItem(groupItem, this); emit dataChanged(groupIndex, groupIndex); this->beginInsertRows(groupIndex, instanceItem->ParentItem()->Row(), instanceItem->ParentItem()->Row()); this->endInsertRows(); } else { //whole new label level added to group item auto groupIndex = GetIndexByItem(groupItem, this); this->beginInsertRows(groupIndex, instanceItem->ParentItem()->Row(), instanceItem->ParentItem()->Row()); this->endInsertRows(); } } else { if (instanceItem->ParentItem()->m_childItems.size() < 3) - { //second instance item was added, so label item will now able to colapse + { //second instance item was added, so label item will now able to collapse // -> the whole label node has to be updated. auto labelIndex = GetIndexByItem(instanceItem->ParentItem(), this); emit dataChanged(labelIndex, labelIndex); this->beginInsertRows(labelIndex, 0, instanceItem->ParentItem()->m_childItems.size()-1); this->endInsertRows(); } else { // instance item was added to existing label item with multiple instances //-> just notify the row insertion auto labelIndex = GetIndexByItem(instanceItem->ParentItem(), this); this->beginInsertRows(labelIndex, instanceItem->Row(), instanceItem->Row()); this->endInsertRows(); } } } void QmitkMultiLabelTreeModel::OnLabelModified(LabelValueType labelValue) { if (labelValue == mitk::LabelSetImage::UNLABELED_VALUE) return; auto instanceItem = GetInstanceItem(labelValue, this->m_RootItem.get()); if (nullptr == instanceItem) { - mitkThrow() << "Internal invalid state. QmitkMultiLabelTreeModel recieved a LabelModified signal for a label that is not represented in the model. Invalid label: " << labelValue; + mitkThrow() << "Internal invalid state. QmitkMultiLabelTreeModel received a LabelModified signal for a label that is not represented in the model. Invalid label: " << labelValue; } auto labelItem = instanceItem->ParentItem(); if (labelItem->m_ClassName == instanceItem->GetLabel()->GetName()) { //only the state of the label changed, but not its position in the model tree. auto index = GetIndexByItem(labelItem, this); - emit dataChanged(index, index); + auto rightIndex = index.sibling(index.row(), this->columnCount() - 1); + emit dataChanged(index, rightIndex); } else { //the name of the label changed and thus its place in the model tree, delete the current item and add a new one this->OnLabelRemoved(labelValue); this->OnLabelAdded(labelValue); } } void QmitkMultiLabelTreeModel::OnLabelRemoved(LabelValueType labelValue) { if (labelValue == mitk::LabelSetImage::UNLABELED_VALUE) return; auto instanceItem = GetInstanceItem(labelValue, this->m_RootItem.get()); - if (nullptr == instanceItem) mitkThrow() << "Internal invalid state. QmitkMultiLabelTreeModel recieved a LabelRemoved signal for a label that is not represented in the model. Invalid label: " << labelValue; + if (nullptr == instanceItem) mitkThrow() << "Internal invalid state. QmitkMultiLabelTreeModel received a LabelRemoved signal for a label that is not represented in the model. Invalid label: " << labelValue; auto labelItem = instanceItem->ParentItem(); if (labelItem->m_childItems.size() > 2) { auto labelIndex = GetIndexByItem(labelItem, this); this->beginRemoveRows(labelIndex, instanceItem->Row(), instanceItem->Row()); labelItem->RemoveChild(instanceItem->Row()); this->endRemoveRows(); } else if (labelItem->m_childItems.size() == 2) { //After removal only one label is left -> the whole label node is about to be changed (no instances are shown any more). auto labelIndex = GetIndexByItem(labelItem, this); this->beginRemoveRows(labelIndex, instanceItem->Row(), instanceItem->Row()); labelItem->RemoveChild(instanceItem->Row()); this->endRemoveRows(); emit dataChanged(labelIndex, labelIndex); } else { //was the only instance of the label, therefor also remove the label node from the tree. auto groupItem = labelItem->ParentItem(); auto groupIndex = GetIndexByItem(groupItem, this); this->beginRemoveRows(groupIndex, labelItem->Row(), labelItem->Row()); groupItem->RemoveChild(labelItem->Row()); this->endRemoveRows(); } } void QmitkMultiLabelTreeModel::OnGroupAdded(GroupIndexType groupIndex) { if (m_ShowGroups) { this->beginInsertRows(QModelIndex(), groupIndex, groupIndex); auto rootItem = m_RootItem.get(); auto groupItem = new QmitkMultiLabelSegTreeItem(QmitkMultiLabelSegTreeItem::ItemType::Group, rootItem); rootItem->AppendChild(groupItem); this->GenerateInternalGroupTree(groupIndex, groupItem); this->endInsertRows(); } } void QmitkMultiLabelTreeModel::OnGroupModified(GroupIndexType /*groupIndex*/) { //currently not needed } void QmitkMultiLabelTreeModel::OnGroupRemoved(GroupIndexType groupIndex) { if (m_ShowGroups) { this->beginRemoveRows(QModelIndex(), groupIndex, groupIndex); auto root = m_RootItem.get(); root->RemoveChild(groupIndex); this->endRemoveRows(); } } void QmitkMultiLabelTreeModel::SetAllowVisibilityModification(bool vmod) { m_AllowVisibilityModification = vmod; } bool QmitkMultiLabelTreeModel::GetAllowVisibilityModification() const { return m_AllowVisibilityModification; } void QmitkMultiLabelTreeModel::SetAllowLockModification(bool lmod) { m_AllowLockModification = lmod; } bool QmitkMultiLabelTreeModel::GetAllowLockModification() const { return m_AllowLockModification; } diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkConvertToMultiLabelSegmentationWidget.cpp b/Modules/SegmentationUI/SegmentationUtilities/QmitkConvertToMultiLabelSegmentationWidget.cpp index bf60382daa..f0ed4472a8 100644 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkConvertToMultiLabelSegmentationWidget.cpp +++ b/Modules/SegmentationUI/SegmentationUtilities/QmitkConvertToMultiLabelSegmentationWidget.cpp @@ -1,536 +1,530 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkConvertToMultiLabelSegmentationWidget.h" #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include static const char* const HelpText = "Select an image and a surface above"; mitk::NodePredicateBase::Pointer GetInputPredicate() { auto isImage = mitk::TNodePredicateDataType::New(); auto isNotSeg = mitk::NodePredicateNot::New(mitk::GetMultiLabelSegmentationPredicate()); auto isSurface = mitk::TNodePredicateDataType::New(); auto isContourModel = mitk::TNodePredicateDataType::New(); auto isContourModelSet = mitk::TNodePredicateDataType::New(); auto isData = mitk::NodePredicateOr::New(isImage, isContourModel, isContourModelSet); isData->AddPredicate(isSurface); auto isValidInput = mitk::NodePredicateAnd::New(isNotSeg, isData); isValidInput->AddPredicate(mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("helper object"))); isValidInput->AddPredicate(mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("hidden object"))); return isValidInput.GetPointer(); } const mitk::DataNode* GetNodeWithLargestImageGeometry(const QmitkNodeSelectionDialog::NodeList& nodes) { mitk::BaseGeometry::ConstPointer refGeometry; mitk::DataNode* result; for (auto& node : nodes) { auto castedData = dynamic_cast(node->GetData()); if (castedData != nullptr) { if (refGeometry.IsNull() || mitk::IsSubGeometry(*refGeometry, *(castedData->GetGeometry()))) { refGeometry = castedData->GetGeometry(); result = node; } } } return result; } QmitkNodeSelectionDialog::NodeList GetNoneImageNodes(const QmitkNodeSelectionDialog::NodeList& nodes) { QmitkNodeSelectionDialog::NodeList result; for (auto& node : nodes) { auto castedData = dynamic_cast(node->GetData()); if (castedData == nullptr) { result.push_back(node); } } return result; } QmitkNodeSelectionDialog::NodeList GetImageNodes(const QmitkNodeSelectionDialog::NodeList& nodes) { QmitkNodeSelectionDialog::NodeList result; for (auto& node : nodes) { auto castedData = dynamic_cast(node->GetData()); if (castedData != nullptr) { result.push_back(node); } } return result; } QmitkNodeSelectionDialog::SelectionCheckFunctionType CheckForSameGeometry(const mitk::DataNode* refNode) { mitk::DataNode::ConstPointer refNodeLambda = refNode; auto lambda = [refNodeLambda](const QmitkNodeSelectionDialog::NodeList& nodes) { if (nodes.empty()) { return std::string(); } mitk::BaseGeometry::ConstPointer refGeometry; bool usedExternalGeo = false; std::string refNodeName; if (refNodeLambda.IsNotNull() && nullptr != refNodeLambda->GetData()) { refGeometry = refNodeLambda->GetData()->GetGeometry(); usedExternalGeo = true; refNodeName = refNodeLambda->GetName(); } if (refGeometry.IsNull()) { auto imageNode = GetNodeWithLargestImageGeometry(nodes); if (nullptr != imageNode) { refGeometry = imageNode->GetData()->GetGeometry(); refNodeName = imageNode->GetName(); } } auto geoPredicate = mitk::NodePredicateSubGeometry::New(refGeometry); for (auto& node : nodes) { auto castedImageData = dynamic_cast(node->GetData()); if (nullptr != castedImageData) { if (!geoPredicate->CheckNode(node)) { std::stringstream ss; ss << "

Invalid selection: All selected images must have the same geometry or a sub geometry "; if (usedExternalGeo) ss << "of the selected reference/output"; ss << ".< / p>

Uses reference data: \""; ss << refNodeName << "\"

"; ss << "

Differing data selections i.a.: \""; ss << node->GetName() << "\"

"; return ss.str(); } } } return std::string(); }; return lambda; } QmitkConvertToMultiLabelSegmentationWidget::QmitkConvertToMultiLabelSegmentationWidget(mitk::DataStorage* dataStorage, QWidget* parent) : QWidget(parent), m_DataStorage(dataStorage) { m_Controls = new Ui::QmitkConvertToMultiLabelSegmentationWidgetControls; m_Controls->setupUi(this); m_Controls->inputNodesSelector->SetDataStorage(dataStorage); m_Controls->inputNodesSelector->SetNodePredicate(GetInputPredicate()); m_Controls->inputNodesSelector->SetSelectionCheckFunction(CheckForSameGeometry(nullptr)); m_Controls->inputNodesSelector->SetSelectionIsOptional(false); m_Controls->inputNodesSelector->SetInvalidInfo(QStringLiteral("Please select inputs (images, surfaces or contours) for conversion")); m_Controls->inputNodesSelector->SetPopUpTitel(QStringLiteral("Select inputs")); m_Controls->inputNodesSelector->SetPopUpHint(QStringLiteral("You may select multiple inputs for conversion. But all selected images must have the same geometry or a sub geometry.")); m_Controls->outputSegSelector->SetDataStorage(dataStorage); m_Controls->outputSegSelector->SetNodePredicate(mitk::GetMultiLabelSegmentationPredicate()); m_Controls->outputSegSelector->SetSelectionIsOptional(false); m_Controls->outputSegSelector->SetInvalidInfo(QStringLiteral("Please select the target segmentation")); m_Controls->outputSegSelector->SetPopUpTitel(QStringLiteral("Select target segmentation")); m_Controls->outputSegSelector->SetPopUpHint(QStringLiteral("Select the segmentation where the converted inputs should be added.")); m_Controls->outputSegSelector->SetAutoSelectNewNodes(true); this->ConfigureWidgets(); connect (m_Controls->btnConvert, &QAbstractButton::clicked, this, &QmitkConvertToMultiLabelSegmentationWidget::OnConvertPressed); connect(m_Controls->inputNodesSelector, &QmitkAbstractNodeSelectionWidget::CurrentSelectionChanged, this, &QmitkConvertToMultiLabelSegmentationWidget::OnInputSelectionChanged); auto widget = this; connect(m_Controls->radioAddToSeg, &QRadioButton::toggled, m_Controls->outputSegSelector, [widget](bool checked) {widget->ConfigureWidgets(); }); connect(m_Controls->checkMultipleOutputs, &QCheckBox::toggled, m_Controls->outputSegSelector, [widget](bool checked) {widget->ConfigureWidgets(); }); } QmitkConvertToMultiLabelSegmentationWidget::~QmitkConvertToMultiLabelSegmentationWidget() { } void QmitkConvertToMultiLabelSegmentationWidget::ConfigureWidgets() { m_InternalEvent = true; if (m_Controls->radioAddToSeg->isChecked()) { auto selectedNode = m_Controls->outputSegSelector->GetSelectedNode(); m_Controls->inputNodesSelector->SetSelectionCheckFunction(CheckForSameGeometry(selectedNode)); } m_Controls->outputSegSelector->setVisible(m_Controls->radioAddToSeg->isChecked()); if (m_Controls->radioNewSeg->isChecked()) { auto selectedNode = m_Controls->refNodeSelector->GetSelectedNode(); } m_Controls->checkMultipleOutputs->setVisible(m_Controls->radioNewSeg->isChecked()); bool refNeeded = m_Controls->radioAddToSeg->isChecked() && !m_Controls->inputNodesSelector->GetSelectedNodes().empty() && nullptr == GetNodeWithLargestImageGeometry(m_Controls->inputNodesSelector->GetSelectedNodes()); m_Controls->refNodeSelector->setVisible(refNeeded); if (refNeeded) m_Controls->inputNodesSelector->SetSelectionCheckFunction(CheckForSameGeometry(m_Controls->refNodeSelector->GetSelectedNode())); m_Controls->groupGrouping->setVisible(m_Controls->radioAddToSeg->isChecked() || !(m_Controls->checkMultipleOutputs->isChecked())); bool inputIsOK = !m_Controls->inputNodesSelector->GetSelectedNodes().empty() && !m_Controls->inputNodesSelector->CurrentSelectionViolatesCheckFunction(); bool outputIsOK = !m_Controls->radioAddToSeg->isChecked() || m_Controls->outputSegSelector->GetSelectedNode().IsNotNull(); bool refIsOK = !m_Controls->radioNewSeg->isChecked() || !m_Controls->refNodeSelector->isVisible() || m_Controls->refNodeSelector->GetSelectedNode().IsNotNull(); m_Controls->btnConvert->setEnabled(inputIsOK && outputIsOK && refIsOK); m_InternalEvent = false; } void QmitkConvertToMultiLabelSegmentationWidget::OnInputSelectionChanged(QmitkAbstractNodeSelectionWidget::NodeList /*nodes*/) { if (!m_InternalEvent) this->ConfigureWidgets(); } void QmitkConvertToMultiLabelSegmentationWidget::OnOutputSelectionChanged(QmitkAbstractNodeSelectionWidget::NodeList /*nodes*/) { if (!m_InternalEvent) this->ConfigureWidgets(); } void QmitkConvertToMultiLabelSegmentationWidget::OnRefSelectionChanged(QmitkAbstractNodeSelectionWidget::NodeList /*nodes*/) { if (!m_InternalEvent) this->ConfigureWidgets(); } void QmitkConvertToMultiLabelSegmentationWidget::OnConvertPressed() { auto dataStorage = m_DataStorage.Lock(); if (dataStorage.IsNull()) { mitkThrow() << "QmitkConvertToMultiLabelSegmentationWidget is in invalid state. No datastorage is set."; } auto nodes = m_Controls->inputNodesSelector->GetSelectedNodes(); mitk::ProgressBar::GetInstance()->Reset(); mitk::ProgressBar::GetInstance()->AddStepsToDo(3 * nodes.size() + 1); if (m_Controls->radioNewSeg->isChecked() && m_Controls->checkMultipleOutputs->isChecked()) { for (auto& node : nodes) { this->ConvertNodes({ node }); } } else { this->ConvertNodes(nodes); } } mitk::Image::Pointer ConvertSurfaceToImage(const mitk::Image* refImage, const mitk::Surface* surface) { mitk::SurfaceToImageFilter::Pointer surfaceToImageFilter = mitk::SurfaceToImageFilter::New(); surfaceToImageFilter->MakeOutputBinaryOn(); surfaceToImageFilter->UShortBinaryPixelTypeOn(); surfaceToImageFilter->SetInput(surface); surfaceToImageFilter->SetImage(refImage); try { surfaceToImageFilter->Update(); } catch (itk::ExceptionObject& excpt) { MITK_ERROR << excpt.GetDescription(); return nullptr; } return surfaceToImageFilter->GetOutput(); } mitk::Image::Pointer ConvertContourModelSetToImage(mitk::Image* refImage, mitk::ContourModelSet* contourSet) { // Use mitk::ContourModelSetToImageFilter to fill the ContourModelSet into the image mitk::ContourModelSetToImageFilter::Pointer contourFiller = mitk::ContourModelSetToImageFilter::New(); contourFiller->SetImage(refImage); contourFiller->SetInput(contourSet); contourFiller->MakeOutputLabelPixelTypeOn(); try { contourFiller->Update(); } catch (const std::exception& e) { MITK_ERROR << "Error while converting contour model. " << e.what(); } catch (...) { MITK_ERROR << "Unknown error while converting contour model."; } return contourFiller->GetOutput(); } +void CheckForLabelCollisionHelper(const QmitkNodeSelectionDialog::NodeList& nodes, + const std::map& foundLabelsMap, + mitk::LabelSetImage::LabelValueVectorType& usedLabelValues, + std::map& labelsMappingMap) +{ + for (const auto& node : nodes) + { + mitk::ProgressBar::GetInstance()->Progress(); + + const auto& foundLabels = foundLabelsMap.at(node); + mitk::LabelSetImage::LabelValueVectorType correctedLabelValues; + bool correctionNeeded = mitk::CheckForLabelValueConflictsAndResolve(foundLabels, usedLabelValues, correctedLabelValues); + + mitk::LabelValueMappingVector mapping; + std::transform(foundLabels.begin(), foundLabels.end(), correctedLabelValues.begin(), std::back_inserter(mapping), + [](mitk::LabelSetImage::LabelValueType a, mitk::LabelSetImage::LabelValueType b) { return std::make_pair(a, b); }); + labelsMappingMap.emplace(node, mapping); + } +} + void QmitkConvertToMultiLabelSegmentationWidget::ConvertNodes(const QmitkNodeSelectionDialog::NodeList& nodes) { auto noneImageNodes = GetNoneImageNodes(nodes); auto imageNodes = GetImageNodes(nodes); mitk::LabelSetImage::Pointer outputSeg; mitk::Image::Pointer refImage; const mitk::DataNode* refNode; if (m_Controls->radioAddToSeg->isChecked()) { outputSeg = dynamic_cast(m_Controls->outputSegSelector->GetSelectedNode()->GetData()); if (outputSeg->GetNumberOfLayers() > 0) { refImage = outputSeg->GetGroupImage(0); } else { //in case we work with a output seg, we need to generate a template image //reason is that the conversion filters used for surfaces or contours need images //as reference and MultiLabelSegmentations is currently empty. refImage = mitk::Image::New(); refImage->Initialize(mitk::MakePixelType(), *(outputSeg->GetTimeGeometry())); } } else { outputSeg = mitk::LabelSetImage::New(); auto inputNode = GetNodeWithLargestImageGeometry(m_Controls->inputNodesSelector->GetSelectedNodes()); if (nullptr != inputNode) { refNode = inputNode; refImage = dynamic_cast(inputNode->GetData()); outputSeg->Initialize(refImage); } else { refNode = m_Controls->refNodeSelector->GetSelectedNode(); refImage = dynamic_cast(refNode->GetData()); outputSeg->Initialize(refImage); } } //convert none image nodes to images std::map preparedImageMap; std::map foundLabelsMap; for (const auto& node : noneImageNodes) { mitk::ProgressBar::GetInstance()->Progress(); mitk::Image::Pointer convertedImage; auto surface = dynamic_cast(node->GetData()); auto contourModel = dynamic_cast(node->GetData()); auto contourModelSet = dynamic_cast(node->GetData()); if (nullptr != surface) { convertedImage = ConvertSurfaceToImage(refImage, surface); } else if (nullptr != contourModelSet) { convertedImage = ConvertContourModelSetToImage(refImage, contourModelSet); } else if (nullptr != contourModel) { auto contourModelSet = mitk::ContourModelSet::New(); contourModelSet->AddContourModel(contourModel); convertedImage = ConvertContourModelSetToImage(refImage, contourModelSet); } else { mitkThrow() << "Invalid state of QmitkConvertToMultiLabelSegmentationWidget. At least one input is of invalid type, that should not be possible to select. Invalid node: " << *(node.GetPointer()); } if (convertedImage.IsNotNull()) { preparedImageMap.emplace(node, convertedImage); //all none image data is converted to binary maps foundLabelsMap.emplace(node, mitk::LabelSetImage::LabelValueVectorType({ 1 })); } else { mitkThrow() << "Failed to convert an input. Failed node: " << *(node.GetPointer()); } } //prepare image nodes and get contained labels for (const auto& node : imageNodes) { mitk::ProgressBar::GetInstance()->Progress(); mitk::LabelSetImage::LabelValueVectorType foundLabels; mitk::ProgressBar::GetInstance()->Progress(); mitk::Image::Pointer convertedImage = mitk::ConvertImageToGroupImage(dynamic_cast(node->GetData()), foundLabels); preparedImageMap.emplace(node, convertedImage); foundLabelsMap.emplace(node, foundLabels); } //check for label collision and fix if needed mitk::LabelSetImage::LabelValueVectorType usedLabelValues = outputSeg->GetAllLabelValues(); std::map labelsMappingMap; - for (const auto& node : imageNodes) - { - mitk::ProgressBar::GetInstance()->Progress(); - - const auto& foundLabels = foundLabelsMap[node]; - mitk::LabelSetImage::LabelValueVectorType correctedLabelValues; - bool correctionNeeded = mitk::CheckForLabelValueConflictsAndResolve(foundLabels, usedLabelValues, correctedLabelValues); - - mitk::LabelValueMappingVector mapping; - std::transform(foundLabels.begin(), foundLabels.end(), correctedLabelValues.begin(), std::back_inserter(mapping), - [](mitk::LabelSetImage::LabelValueType a, mitk::LabelSetImage::LabelValueType b) { return std::make_pair(a, b); }); - labelsMappingMap.emplace(node, mapping); - } - - for (const auto& node : noneImageNodes) - { - mitk::ProgressBar::GetInstance()->Progress(); - - const auto& foundLabels = foundLabelsMap[node]; - mitk::LabelSetImage::LabelValueVectorType correctedLabelValues; - bool correctionNeeded = mitk::CheckForLabelValueConflictsAndResolve(foundLabels, usedLabelValues, correctedLabelValues); - - mitk::LabelValueMappingVector mapping; - std::transform(foundLabels.begin(), foundLabels.end(), correctedLabelValues.begin(), std::back_inserter(mapping), - [](mitk::LabelSetImage::LabelValueType a, mitk::LabelSetImage::LabelValueType b) { return std::make_pair(a, b); }); - labelsMappingMap.emplace(node, mapping); - } - + CheckForLabelCollisionHelper(imageNodes, foundLabelsMap, usedLabelValues, labelsMappingMap); + CheckForLabelCollisionHelper(noneImageNodes, foundLabelsMap, usedLabelValues, labelsMappingMap); //Ensure that we have the first layer to add mitk::LabelSetImage::GroupIndexType currentGroupIndex = 0; if (m_Controls->radioAddToSeg->isChecked() || 0 == outputSeg->GetNumberOfLayers()) { currentGroupIndex = outputSeg->AddLayer(); } //Transfer content and add labels for (const auto& node : imageNodes) { mitk::ProgressBar::GetInstance()->Progress(); if (m_Controls->radioSingleGroup->isChecked() && node != imageNodes.front()) currentGroupIndex = outputSeg->AddLayer(); const auto& labelsMapping = labelsMappingMap.at(node); for (auto [oldV, correctedV] : labelsMapping) { std::string name = "Value " + std::to_string(oldV); if (m_Controls->radioMergeGroup->isChecked()) name = node->GetName() + " " + name; auto label = mitk::LabelSetImageHelper::CreateNewLabel(outputSeg, name, true); label->SetValue(correctedV); outputSeg->AddLabel(label, currentGroupIndex, false, false); } mitk::TransferLabelContent(preparedImageMap.at(node), outputSeg->GetGroupImage(currentGroupIndex), outputSeg->GetConstLabelsByValue(outputSeg->GetLabelValuesByGroup(currentGroupIndex)), mitk::LabelSetImage::UNLABELED_VALUE, mitk::LabelSetImage::UNLABELED_VALUE, false, labelsMapping); } for (const auto& node : noneImageNodes) { mitk::ProgressBar::GetInstance()->Progress(); if (m_Controls->radioSingleGroup->isChecked() && (node != noneImageNodes.front() || !imageNodes.empty())) currentGroupIndex = outputSeg->AddLayer(); const auto& labelsMapping = labelsMappingMap.at(node); for (auto [oldV, correctedV] : labelsMapping) { auto label = mitk::LabelSetImageHelper::CreateNewLabel(outputSeg, node->GetName(), true); label->SetValue(correctedV); mitk::ColorProperty::ConstPointer colorProp = dynamic_cast(node->GetConstProperty("color").GetPointer()); if (colorProp.IsNotNull()) label->SetColor(colorProp->GetColor()); outputSeg->AddLabel(label, currentGroupIndex, false, false); } mitk::TransferLabelContent(preparedImageMap.at(node), outputSeg->GetGroupImage(currentGroupIndex), outputSeg->GetConstLabelsByValue(outputSeg->GetLabelValuesByGroup(currentGroupIndex)), mitk::LabelSetImage::UNLABELED_VALUE, mitk::LabelSetImage::UNLABELED_VALUE, false, labelsMapping); } if (m_Controls->radioAddToSeg->isChecked()) { m_Controls->outputSegSelector->GetSelectedNode()->Modified(); } else { mitk::DataNode::Pointer outNode = mitk::DataNode::New(); std::stringstream stream; stream << "ConvertedSeg"; if (nodes.size() == 1) { stream << "_" << nodes.front()->GetName(); } outNode->SetName(stream.str()); outNode->SetData(outputSeg); auto dataStorage = m_DataStorage.Lock(); dataStorage->Add(outNode); } mitk::ProgressBar::GetInstance()->Reset(); }