diff --git a/Modules/SurfaceInterpolation/mitkPointCloudScoringFilter.cpp b/Modules/SurfaceInterpolation/mitkPointCloudScoringFilter.cpp index ba07f1ff6e..9740d09a06 100644 --- a/Modules/SurfaceInterpolation/mitkPointCloudScoringFilter.cpp +++ b/Modules/SurfaceInterpolation/mitkPointCloudScoringFilter.cpp @@ -1,134 +1,185 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkPointCloudScoringFilter.h" +#include + #include #include #include +#include +#include +#include #include #include +#include +#include mitk::PointCloudScoringFilter::PointCloudScoringFilter(): m_NumberOfOutpPoints(0) { m_OutpGrid = mitk::UnstructuredGrid::New(); - this->SetNthOutput(0, m_OutpGrid); } mitk::PointCloudScoringFilter::~PointCloudScoringFilter(){} void mitk::PointCloudScoringFilter::GenerateData() { if(UnstructuredGridToUnstructuredGridFilter::GetNumberOfInputs()!=2) { MITK_ERROR << "Not enough input arguments for PointCloudScoringFilter" << std::endl; return; } DataObjectPointerArray inputs = UnstructuredGridToUnstructuredGridFilter::GetInputs(); mitk::UnstructuredGrid::Pointer edgeGrid = dynamic_cast(inputs.at(0).GetPointer()); mitk::UnstructuredGrid::Pointer segmGrid = dynamic_cast(inputs.at(1).GetPointer()); if(edgeGrid->IsEmpty() || segmGrid->IsEmpty()) { if(edgeGrid->IsEmpty()) MITK_ERROR << "Cannot convert edgeGrid into Surfaces" << std::endl; if(segmGrid->IsEmpty()) MITK_ERROR << "Cannot convert segmGrid into Surfaces" << std::endl; } vtkSmartPointer edgevtkGrid = edgeGrid->GetVtkUnstructuredGrid(); vtkSmartPointer segmvtkGrid = segmGrid->GetVtkUnstructuredGrid(); // KdTree from here vtkSmartPointer kdPoints = vtkSmartPointer::New(); vtkSmartPointer kdTree = vtkSmartPointer::New(); for(int i=0; iGetNumberOfPoints(); i++) { kdPoints->InsertNextPoint(edgevtkGrid->GetPoint(i)); } kdTree->BuildLocatorFromPoints(kdPoints); // KdTree until here vtkSmartPointer points = vtkSmartPointer::New(); for(int i=0; iGetNumberOfPoints(); i++) { points->InsertNextPoint(segmvtkGrid->GetPoint(i)); } std::vector< ScorePair > score; + std::vector< double > distances; double dist_glob = 0.0; double dist = 0.0; for(int i=0; iGetNumberOfPoints(); i++) { double point[3]; points->GetPoint(i,point); kdTree->FindClosestPoint(point[0],point[1],point[2],dist); dist_glob+=dist; + distances.push_back(dist); score.push_back(std::make_pair(i,dist)); } double avg = dist_glob / points->GetNumberOfPoints(); + double tmpVar = 0.0; + double highest = 0.0; + + for(unsigned int i=0;ihighest) + highest = distances.at(i); + } + + //CUBIC MEAN + double cubicAll = 0.0; + for(unsigned i=0; i avg) + if(score.at(i).second > metricValue) { m_FilteredScores.push_back(std::make_pair(score.at(i).first,score.at(i).second)); } } m_NumberOfOutpPoints = m_FilteredScores.size(); vtkSmartPointer filteredPoints = vtkSmartPointer::New(); + //storing the distances in the uGrid PointData + vtkSmartPointer pointDataDistances = + vtkSmartPointer::New(); + pointDataDistances->SetNumberOfComponents(1); + pointDataDistances->SetNumberOfTuples(m_FilteredScores.size()); + pointDataDistances->SetName("Distances"); + for(unsigned int i=0; iGetPoint(m_FilteredScores.at(i).first); filteredPoints->InsertNextPoint(point[0],point[1],point[2]); + if(score.at(i).second > 0.001) + { + double dist[1] = {score.at(i).second}; + pointDataDistances->InsertTuple(i,dist); + } + else + { + double dist[1] = {0.0}; + pointDataDistances->InsertTuple(i,dist); + } } unsigned int numPoints = filteredPoints->GetNumberOfPoints(); vtkSmartPointer verts = vtkSmartPointer::New(); verts->GetPointIds()->SetNumberOfIds(numPoints); for(unsigned int i=0; iGetPointIds()->SetId(i,i); } vtkSmartPointer uGrid = vtkSmartPointer::New(); uGrid->Allocate(1); uGrid->InsertNextCell(verts->GetCellType(), verts->GetPointIds()); uGrid->SetPoints(filteredPoints); + uGrid->GetPointData()->AddArray(pointDataDistances); m_OutpGrid->SetVtkUnstructuredGrid(uGrid); + + score.clear(); + distances.clear(); } void mitk::PointCloudScoringFilter::GenerateOutputInformation() { Superclass::GenerateOutputInformation(); }