diff --git a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.cpp b/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.cpp
index 3a238fb710..5afb726928 100644
--- a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.cpp
+++ b/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.cpp
@@ -1,199 +1,200 @@
/*============================================================================
The Medical Imaging Interaction Toolkit (MITK)
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
============================================================================*/
#include "org_mitk_gui_qt_flow_segmentation_Activator.h"
// Blueberry
#include
#include
#include
#include
//MITK
#include
#include
#include
#include
#include
#include
#include
// Qmitk
#include "QmitkSegmentationFlowControlView.h"
#include
// Qt
#include
#include
#include
const std::string QmitkSegmentationFlowControlView::VIEW_ID = "org.mitk.views.flow.control";
QmitkSegmentationFlowControlView::QmitkSegmentationFlowControlView()
: m_Controls(new Ui::SegmentationFlowControlView),
m_Parent(nullptr)
{
auto notHelperObject = mitk::NodePredicateNot::New(
mitk::NodePredicateProperty::New("helper object"));
m_SegmentationPredicate = mitk::NodePredicateAnd::New(
mitk::TNodePredicateDataType::New(),
notHelperObject);
m_SegmentationTaskListPredicate = mitk::NodePredicateAnd::New(
mitk::TNodePredicateDataType::New(),
notHelperObject);
}
void QmitkSegmentationFlowControlView::SetFocus()
{
m_Controls->btnStoreAndAccept->setFocus();
}
void QmitkSegmentationFlowControlView::CreateQtPartControl(QWidget* parent)
{
// create GUI widgets from the Qt Designer's .ui file
m_Controls->setupUi(parent);
m_Parent = parent;
using Self = QmitkSegmentationFlowControlView;
connect(m_Controls->btnStore, &QPushButton::clicked, this, &Self::OnStoreButtonClicked);
connect(m_Controls->btnStoreAndAccept, &QPushButton::clicked, this, &Self::OnAcceptButtonClicked);
connect(m_Controls->segmentationTaskListWidget, &QmitkSegmentationTaskListWidget::ActiveTaskChanged, this, &Self::OnActiveTaskChanged);
connect(m_Controls->segmentationTaskListWidget, &QmitkSegmentationTaskListWidget::CurrentTaskChanged, this, &Self::OnCurrentTaskChanged);
m_Controls->btnStore->setIcon(berry::QtStyleManager::ThemeIcon(QStringLiteral(":/org_mitk_icons/icons/awesome/scalable/actions/document-save.svg")));
m_Controls->segmentationTaskListWidget->setVisible(false);
m_Controls->btnStore->setVisible(false);
m_Controls->labelStored->setVisible(false);
UpdateControls();
m_OutputDir = QString::fromStdString(mitk::BaseApplication::instance().config().getString("flow.outputdir", itksys::SystemTools::GetCurrentWorkingDirectory()));
m_OutputDir = QDir::fromNativeSeparators(m_OutputDir);
m_FileExtension = QString::fromStdString(mitk::BaseApplication::instance().config().getString("flow.outputextension", "nrrd"));
}
void QmitkSegmentationFlowControlView::OnStoreButtonClicked()
{
this->SaveActiveTask(true);
}
void QmitkSegmentationFlowControlView::OnAcceptButtonClicked()
{
if (m_Controls->segmentationTaskListWidget->isVisible())
{
this->SaveActiveTask();
+ m_Controls->segmentationTaskListWidget->LoadNextUnfinishedTask();
}
else
{
auto nodes = this->GetDataStorage()->GetSubset(m_SegmentationPredicate);
for (auto node : *nodes)
{
QString outputpath = m_OutputDir + "/" + QString::fromStdString(node->GetName()) + "." + m_FileExtension;
outputpath = QDir::toNativeSeparators(QDir::cleanPath(outputpath));
mitk::IOUtil::Save(node->GetData(), outputpath.toStdString());
}
m_Controls->labelStored->setVisible(true);
}
}
void QmitkSegmentationFlowControlView::SaveActiveTask(bool saveAsIntermediateResult)
{
auto* taskList = m_Controls->segmentationTaskListWidget->GetTaskList();
if (taskList != nullptr)
{
auto activeTaskIndex = m_Controls->segmentationTaskListWidget->GetActiveTaskIndex();
if (activeTaskIndex.has_value())
{
auto segmentationNode = m_Controls->segmentationTaskListWidget->GetSegmentationDataNode(activeTaskIndex.value());
if (segmentationNode != nullptr)
{
QApplication::setOverrideCursor(Qt::BusyCursor);
try
{
taskList->SaveTask(activeTaskIndex.value(), segmentationNode->GetData(), saveAsIntermediateResult);
m_Controls->segmentationTaskListWidget->OnUnsavedChangesSaved();
}
catch (const mitk::Exception& e)
{
MITK_ERROR << e;
}
QApplication::restoreOverrideCursor();
}
}
}
}
void QmitkSegmentationFlowControlView::OnActiveTaskChanged(const std::optional&)
{
this->UpdateControls();
}
void QmitkSegmentationFlowControlView::OnCurrentTaskChanged(const std::optional&)
{
this->UpdateControls();
}
void QmitkSegmentationFlowControlView::UpdateControls()
{
auto dataStorage = this->GetDataStorage();
auto hasTaskList = !dataStorage->GetSubset(m_SegmentationTaskListPredicate)->empty();
m_Controls->segmentationTaskListWidget->setVisible(hasTaskList);
if (hasTaskList)
{
auto activeTaskIsShown = m_Controls->segmentationTaskListWidget->ActiveTaskIsShown();
m_Controls->btnStore->setVisible(activeTaskIsShown);
m_Controls->btnStoreAndAccept->setEnabled(activeTaskIsShown);
}
else
{
auto hasSegmentation = !dataStorage->GetSubset(m_SegmentationPredicate)->empty();
m_Controls->btnStore->setVisible(false);
m_Controls->btnStoreAndAccept->setEnabled(hasSegmentation);
}
}
void QmitkSegmentationFlowControlView::NodeAdded(const mitk::DataNode* node)
{
if (dynamic_cast(node->GetData()) != nullptr)
this->UpdateControls();
}
void QmitkSegmentationFlowControlView::NodeChanged(const mitk::DataNode* node)
{
if (dynamic_cast(node->GetData()) != nullptr)
this->UpdateControls();
}
void QmitkSegmentationFlowControlView::NodeRemoved(const mitk::DataNode* node)
{
if (dynamic_cast(node->GetData()) != nullptr)
this->UpdateControls();
}
diff --git a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.cpp b/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.cpp
index b8f7051641..4bc7e69918 100644
--- a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.cpp
+++ b/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.cpp
@@ -1,774 +1,790 @@
/*============================================================================
The Medical Imaging Interaction Toolkit (MITK)
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
============================================================================*/
#include "QmitkSegmentationTaskListWidget.h"
#include "org_mitk_gui_qt_flow_segmentation_Activator.h"
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
namespace
{
berry::IPreferences::Pointer GetSegmentationPreferences()
{
return berry::Platform::GetPreferencesService()->GetSystemPreferences()->Node("/org.mitk.views.segmentation");
}
mitk::DataStorage* GetDataStorage()
{
auto* pluginContext = org_mitk_gui_qt_flow_segmentation_Activator::GetContext();
auto dataStorageServiceReference = pluginContext->getServiceReference();
if (dataStorageServiceReference)
{
auto* dataStorageService = pluginContext->getService(dataStorageServiceReference);
if (dataStorageService != nullptr)
{
auto dataStorageReference = dataStorageService->GetDataStorage();
pluginContext->ungetService(dataStorageServiceReference);
return dataStorageReference->GetDataStorage();
}
}
return nullptr;
}
fs::path GetInputLocation(const mitk::BaseData* data)
{
std::string result;
if (data != nullptr)
data->GetPropertyList()->GetStringProperty("MITK.IO.reader.inputlocation", result);
return result;
}
QString ColorString(const QString& string, const QColor& color, const QColor& backgroundColor = QColor::Invalid)
{
if (!color.isValid() && !backgroundColor.isValid())
return string;
auto result = QStringLiteral("%1").arg(string);
return result;
}
}
/* This constructor has three objectives:
* 1. Do widget initialization that cannot be done in the .ui file
* 2. Connect signals and slots
* 3. Explicitly trigger a reset to a valid initial widget state
*/
QmitkSegmentationTaskListWidget::QmitkSegmentationTaskListWidget(QWidget* parent)
: QWidget(parent),
m_Ui(new Ui::QmitkSegmentationTaskListWidget),
m_FileSystemWatcher(new QFileSystemWatcher(this)),
m_UnsavedChanges(false)
{
m_Ui->setupUi(this);
m_Ui->selectionWidget->SetDataStorage(GetDataStorage());
m_Ui->selectionWidget->SetSelectionIsOptional(true);
m_Ui->selectionWidget->SetEmptyInfo(QStringLiteral("Select a segmentation task list"));
m_Ui->selectionWidget->SetAutoSelectNewNodes(true);
m_Ui->selectionWidget->SetNodePredicate(mitk::TNodePredicateDataType::New());
m_Ui->progressBar->setStyleSheet(QString("QProgressBar::chunk { background-color: %1; }").arg(QmitkStyleManager::GetIconAccentColor()));
using Self = QmitkSegmentationTaskListWidget;
connect(m_Ui->selectionWidget, &QmitkSingleNodeSelectionWidget::CurrentSelectionChanged, this, &Self::OnSelectionChanged);
connect(m_Ui->previousButton, &QToolButton::clicked, this, &Self::OnPreviousButtonClicked);
connect(m_Ui->nextButton, &QToolButton::clicked, this, &Self::OnNextButtonClicked);
connect(m_Ui->loadButton, &QPushButton::clicked, this, &Self::OnLoadButtonClicked);
connect(m_FileSystemWatcher, &QFileSystemWatcher::directoryChanged, this, &Self::OnResultDirectoryChanged);
this->OnSelectionChanged(m_Ui->selectionWidget->GetSelectedNodes());
}
QmitkSegmentationTaskListWidget::~QmitkSegmentationTaskListWidget()
{
}
mitk::SegmentationTaskList* QmitkSegmentationTaskListWidget::GetTaskList() const
{
return m_TaskList;
}
std::optional QmitkSegmentationTaskListWidget::GetActiveTaskIndex() const
{
return m_ActiveTaskIndex;
}
std::optional QmitkSegmentationTaskListWidget::GetCurrentTaskIndex() const
{
return m_CurrentTaskIndex;
}
void QmitkSegmentationTaskListWidget::OnUnsavedChangesSaved()
{
if (m_UnsavedChanges)
{
m_UnsavedChanges = false;
if (this->ActiveTaskIsShown())
this->UpdateDetailsLabel();
}
}
/* Make sure that the widget transitions into a valid state whenever the
* selection changes.
*/
void QmitkSegmentationTaskListWidget::OnSelectionChanged(const QmitkSingleNodeSelectionWidget::NodeList& nodes)
{
this->UnloadTasks();
this->ResetControls();
if (!nodes.empty())
{
m_TaskListNode = nodes.front();
auto taskList = dynamic_cast(m_TaskListNode->GetData());
if (taskList != nullptr)
{
this->OnTaskListChanged(taskList);
return;
}
}
this->SetTaskList(nullptr);
m_TaskListNode = nullptr;
}
/* Reset all controls to a default state as a common basis for further
* adjustments.
*/
void QmitkSegmentationTaskListWidget::ResetControls()
{
m_Ui->progressBar->setEnabled(false);
m_Ui->progressBar->setFormat("");
m_Ui->progressBar->setValue(0);
m_Ui->progressBar->setMaximum(1);
m_Ui->previousButton->setEnabled(false);
m_Ui->nextButton->setEnabled(false);
this->UpdateLoadButton();
this->UpdateDetailsLabel();
}
/* If the segmentation task changed, reset all member variables to expected
* default values and reset the file system watcher.
*/
void QmitkSegmentationTaskListWidget::SetTaskList(mitk::SegmentationTaskList* taskList)
{
if (m_TaskList != taskList)
{
m_TaskList = taskList;
if (taskList != nullptr)
{
this->SetCurrentTaskIndex(0);
}
else
{
this->SetCurrentTaskIndex(std::nullopt);
}
this->ResetFileSystemWatcher();
}
}
void QmitkSegmentationTaskListWidget::ResetFileSystemWatcher()
{
auto paths = m_FileSystemWatcher->directories();
if (!paths.empty())
m_FileSystemWatcher->removePaths(paths);
if (m_TaskList.IsNotNull())
{
for (const auto& task : *m_TaskList)
{
auto resultPath = m_TaskList->GetAbsolutePath(task.GetResult()).remove_filename();
if (!fs::exists(resultPath))
{
try
{
fs::create_directories(resultPath);
}
catch (const fs::filesystem_error& e)
{
MITK_ERROR << e.what();
}
}
if (fs::exists(resultPath))
m_FileSystemWatcher->addPath(QString::fromStdString(resultPath.string()));
}
}
}
void QmitkSegmentationTaskListWidget::OnResultDirectoryChanged(const QString&)
{
// TODO: If a segmentation was modified ("Unsaved changes"), saved ("Done"), and then the file is deleted, the status should be "Unsaved changes" instead of "Not done".
this->UpdateProgressBar();
this->UpdateDetailsLabel();
}
void QmitkSegmentationTaskListWidget::UpdateProgressBar()
{
int progress = 0;
for (size_t i = 0; i < m_TaskList->GetNumberOfTasks(); ++i)
{
if (m_TaskList->IsDone(i))
++progress;
}
m_Ui->progressBar->setValue(progress);
}
/* Provided that a valid segmentation task list is currently selected and the
* widget is in its default state, update all controls accordingly.
*/
void QmitkSegmentationTaskListWidget::OnTaskListChanged(mitk::SegmentationTaskList* taskList)
{
this->SetTaskList(taskList);
const auto numTasks = taskList->GetNumberOfTasks();
m_Ui->progressBar->setMaximum(numTasks);
m_Ui->progressBar->setFormat(QStringLiteral("%v/%m Task(s) done"));
m_Ui->progressBar->setEnabled(true);
this->UpdateProgressBar();
m_Ui->loadButton->setEnabled(true);
if (numTasks > 1)
m_Ui->nextButton->setEnabled(true);
}
/* If possible, change the currently displayed task to the previous task.
* Enable/disable navigation buttons according to the task's position.
*/
void QmitkSegmentationTaskListWidget::OnPreviousButtonClicked()
{
const auto maxIndex = m_TaskList->GetNumberOfTasks() - 1;
auto current = m_CurrentTaskIndex.value();
if (current != 0)
this->SetCurrentTaskIndex(current - 1);
- current = m_CurrentTaskIndex.value();
-
- if (current == 0)
- m_Ui->previousButton->setEnabled(false);
-
- if (current < maxIndex)
- m_Ui->nextButton->setEnabled(true);
+ this->UpdateNavigationButtons();
}
/* If possible, change the currently displayed task to the next task.
* Enable/disable navigation buttons according to the task's position.
*/
void QmitkSegmentationTaskListWidget::OnNextButtonClicked()
{
const auto maxIndex = m_TaskList->GetNumberOfTasks() - 1;
auto current = m_CurrentTaskIndex.value();
if (current < maxIndex)
this->SetCurrentTaskIndex(current + 1);
- current = m_CurrentTaskIndex.value();
+ this->UpdateNavigationButtons();
+}
- if (current != 0)
- m_Ui->previousButton->setEnabled(true);
+void QmitkSegmentationTaskListWidget::UpdateNavigationButtons()
+{
+ const auto maxIndex = m_TaskList->GetNumberOfTasks() - 1;
+ const auto current = m_CurrentTaskIndex.value();
- if (current >= maxIndex)
- m_Ui->nextButton->setEnabled(false);
+ m_Ui->previousButton->setEnabled(current != 0);
+ m_Ui->nextButton->setEnabled(current != maxIndex);
}
/* Update affected controls when the currently displayed task changed.
*/
void QmitkSegmentationTaskListWidget::OnCurrentTaskChanged()
{
this->UpdateLoadButton();
+ this->UpdateNavigationButtons();
this->UpdateDetailsLabel();
}
/* Update the load button according to the currently displayed task.
*/
void QmitkSegmentationTaskListWidget::UpdateLoadButton()
{
auto text = !this->ActiveTaskIsShown()
? QStringLiteral("Load task")
: QStringLiteral("Task");
if (m_CurrentTaskIndex.has_value())
{
const auto current = m_CurrentTaskIndex.value();
if (m_TaskList.IsNotNull())
{
text += QString(" %1/%2").arg(current + 1).arg(m_TaskList->GetNumberOfTasks());
if (m_TaskList->HasName(current))
text += QStringLiteral(":\n") + QString::fromStdString(m_TaskList->GetName(current));
}
m_Ui->loadButton->setDisabled(this->ActiveTaskIsShown());
}
else
{
m_Ui->loadButton->setEnabled(false);
}
m_Ui->loadButton->setText(text);
}
/* Update the details label according to the currently display task.
* The text is composed of the status of the task and a variable number
* of text blocks according to the optional values provided by the task.
*/
void QmitkSegmentationTaskListWidget::UpdateDetailsLabel()
{
if (!m_CurrentTaskIndex.has_value())
{
m_Ui->detailsLabel->clear();
return;
}
const auto current = m_CurrentTaskIndex.value();
bool isDone = m_TaskList->IsDone(current);
auto details = QString("Status: %1 / ").arg(this->ActiveTaskIsShown()
? ColorString("Active", Qt::white, QColor(Qt::green).darker())
: ColorString("Inactive", Qt::white, QColor(Qt::red).darker()));
if (m_UnsavedChanges && this->ActiveTaskIsShown())
{
details += QString("%1
").arg(ColorString("Unsaved changes", Qt::white, QColor(Qt::red).darker()));
}
else
{
details += QString("%1
").arg(isDone
? ColorString("Done", Qt::white, QColor(Qt::green).darker())
: ColorString("Not done", Qt::white, QColor(Qt::red).darker()));
}
if (m_TaskList->HasDescription(current))
details += QString("Description: %1
").arg(QString::fromStdString(m_TaskList->GetDescription(current)));
QStringList stringList;
if (m_TaskList->HasImage(current))
stringList << QString::fromStdString("Image: " + m_TaskList->GetImage(current).string());
if (m_TaskList->HasSegmentation(current))
stringList << QString::fromStdString("Segmentation: " + m_TaskList->GetSegmentation(current).string());
if (m_TaskList->HasLabelName(current))
stringList << QString::fromStdString("Label name: " + m_TaskList->GetLabelName(current));
if (m_TaskList->HasLabelNameSuggestions(current))
stringList << QString::fromStdString("Label name suggestions: " + m_TaskList->GetLabelNameSuggestions(current).string());
if (m_TaskList->HasPreset(current))
stringList << QString::fromStdString("Label set preset: " + m_TaskList->GetPreset(current).string());
if (m_TaskList->HasDynamic(current))
stringList << QString("Segmentation type: %1").arg(m_TaskList->GetDynamic(current) ? "Dynamic" : "Static");
if (!stringList.empty())
details += QString("%1
").arg(stringList.join(QStringLiteral("
")));
m_Ui->detailsLabel->setText(details);
}
/* Load/activate the currently displayed task. Unload all data nodes from
* previously active tasks first, but spare and reuse the image if possible.
*/
void QmitkSegmentationTaskListWidget::OnLoadButtonClicked()
{
if (!this->HandleUnsavedChanges() || m_UnsavedChanges)
return;
m_Ui->loadButton->setEnabled(false);
QApplication::setOverrideCursor(Qt::BusyCursor);
this->LoadTask(this->GetImageDataNode(m_CurrentTaskIndex.value()));
QApplication::restoreOverrideCursor();
}
/* If present, return the image data node for the task with the specified
* index. Otherwise, return nullptr.
*/
mitk::DataNode* QmitkSegmentationTaskListWidget::GetImageDataNode(size_t index) const
{
const auto imagePath = m_TaskList->GetAbsolutePath(m_TaskList->GetImage(index));
auto imageNodes = GetDataStorage()->GetDerivations(m_TaskListNode, mitk::NodePredicateFunction::New([imagePath](const mitk::DataNode* node) {
return imagePath == GetInputLocation(node->GetData());
}));
return !imageNodes->empty()
? imageNodes->front()
: nullptr;
}
/* If present, return the segmentation data node for the task with the
* specified index. Otherwise, return nullptr.
*/
mitk::DataNode* QmitkSegmentationTaskListWidget::GetSegmentationDataNode(size_t index) const
{
const auto* imageNode = this->GetImageDataNode(index);
if (imageNode != nullptr)
{
auto segmentations = GetDataStorage()->GetDerivations(imageNode, mitk::TNodePredicateDataType::New());
if (!segmentations->empty())
return segmentations->front();
}
return nullptr;
}
/* Unload all task data nodes but spare the passed image data node.
*/
void QmitkSegmentationTaskListWidget::UnloadTasks(const mitk::DataNode* skip)
{
this->UnsubscribeFromActiveSegmentation();
if (m_TaskListNode.IsNotNull())
{
mitk::DataStorage::Pointer dataStorage = GetDataStorage();
auto imageNodes = dataStorage->GetDerivations(m_TaskListNode, mitk::TNodePredicateDataType::New());
for (auto imageNode : *imageNodes)
{
dataStorage->Remove(dataStorage->GetDerivations(imageNode, nullptr, false));
if (imageNode != skip)
dataStorage->Remove(imageNode);
}
}
this->SetActiveTaskIndex(std::nullopt);
}
+void QmitkSegmentationTaskListWidget::LoadNextUnfinishedTask()
+{
+ const auto current = m_CurrentTaskIndex.value();
+ const auto numTasks = m_TaskList->GetNumberOfTasks();
+
+ for (size_t unboundNext = current; unboundNext < current + numTasks; ++unboundNext)
+ {
+ auto next = unboundNext % numTasks;
+
+ if (!m_TaskList->IsDone(next))
+ {
+ this->SetCurrentTaskIndex(next);
+ this->OnLoadButtonClicked();
+ break;
+ }
+ }
+}
+
/* Load/activate the currently displayed task. The task must specify
* an image. The segmentation is either created from scratch with an optional
* name for the first label, possibly based on a label set preset specified by
* the task, or loaded as specified by the task. If a result file does
* exist, it is chosen as segmentation instead.
*/
void QmitkSegmentationTaskListWidget::LoadTask(mitk::DataNode::Pointer imageNode)
{
this->UnloadTasks(imageNode);
const auto current = m_CurrentTaskIndex.value();
mitk::Image::Pointer image;
mitk::LabelSetImage::Pointer segmentation;
try
{
if (imageNode.IsNull())
{
const auto path = m_TaskList->GetAbsolutePath(m_TaskList->GetImage(current));
image = mitk::IOUtil::Load(path.string());
}
const auto path = m_TaskList->GetAbsolutePath(m_TaskList->GetResult(current));
const auto interimPath = m_TaskList->GetInterimPath(path);
if (fs::exists(path))
{
segmentation = mitk::IOUtil::Load(path.string());
}
else if (fs::exists(interimPath))
{
segmentation = mitk::IOUtil::Load(interimPath.string());
}
else if (m_TaskList->HasSegmentation(current))
{
const auto path = m_TaskList->GetAbsolutePath(m_TaskList->GetSegmentation(current));
segmentation = mitk::IOUtil::Load(path.string());
}
}
catch (const mitk::Exception&)
{
return;
}
auto dataStorage = GetDataStorage();
if (imageNode.IsNull())
{
imageNode = mitk::DataNode::New();
imageNode->SetData(image);
dataStorage->Add(imageNode, m_TaskListNode);
mitk::RenderingManager::GetInstance()->InitializeViews(image->GetTimeGeometry());
}
else
{
image = static_cast(imageNode->GetData());
}
auto name = "Task " + std::to_string(current + 1);
imageNode->SetName(name);
if (segmentation.IsNull())
{
mitk::Image::ConstPointer templateImage = image;
if (templateImage->GetDimension() > 3)
{
if (m_TaskList->HasDynamic(current))
{
if (!m_TaskList->GetDynamic(current))
templateImage = mitk::SegmentationHelper::GetStaticSegmentationTemplate(image);
}
else
{
QmitkStaticDynamicSegmentationDialog dialog(this);
dialog.SetReferenceImage(templateImage);
dialog.exec();
templateImage = dialog.GetSegmentationTemplate();
}
}
auto segmentationNode = mitk::LabelSetImageHelper::CreateNewSegmentationNode(imageNode, templateImage, name);
segmentation = static_cast(segmentationNode->GetData());
if (m_TaskList->HasPreset(current))
{
const auto path = m_TaskList->GetAbsolutePath(m_TaskList->GetPreset(current));
mitk::LabelSetIOHelper::LoadLabelSetImagePreset(path.string(), segmentation);
}
else
{
auto label = mitk::LabelSetImageHelper::CreateNewLabel(segmentation);
if (m_TaskList->HasLabelName(current))
label->SetName(m_TaskList->GetLabelName(current));
segmentation->GetActiveLabelSet()->AddLabel(label);
}
dataStorage->Add(segmentationNode, imageNode);
}
else
{
auto segmentationNode = mitk::DataNode::New();
segmentationNode->SetName(name);
segmentationNode->SetData(segmentation);
dataStorage->Add(segmentationNode, imageNode);
}
auto prefs = GetSegmentationPreferences();
if (prefs.IsNotNull())
{
if (m_TaskList->HasLabelNameSuggestions(current))
{
auto path = m_TaskList->GetAbsolutePath(m_TaskList->GetLabelNameSuggestions(current));
prefs->PutBool("default label naming", false);
prefs->Put("label suggestions", QString::fromStdString(path.string()));
prefs->PutBool("replace standard suggestions", true);
prefs->PutBool("suggest once", true);
}
else
{
prefs->PutBool("default label naming", true);
prefs->Put("label suggestions", "");
}
}
m_UnsavedChanges = false;
this->SetActiveTaskIndex(current);
this->SubscribeToActiveSegmentation();
this->OnCurrentTaskChanged();
}
void QmitkSegmentationTaskListWidget::SubscribeToActiveSegmentation()
{
if (m_ActiveTaskIndex.has_value())
{
auto segmentationNode = this->GetSegmentationDataNode(m_ActiveTaskIndex.value());
if (segmentationNode != nullptr)
{
auto segmentation = static_cast(segmentationNode->GetData());
auto command = itk::SimpleMemberCommand::New();
command->SetCallbackFunction(this, &QmitkSegmentationTaskListWidget::OnSegmentationModified);
m_SegmentationModifiedObserverTag = segmentation->AddObserver(itk::ModifiedEvent(), command);
}
}
}
void QmitkSegmentationTaskListWidget::UnsubscribeFromActiveSegmentation()
{
if (m_ActiveTaskIndex.has_value() && m_SegmentationModifiedObserverTag.has_value())
{
auto segmentationNode = this->GetSegmentationDataNode(m_ActiveTaskIndex.value());
if (segmentationNode != nullptr)
{
auto segmentation = static_cast(segmentationNode->GetData());
segmentation->RemoveObserver(m_SegmentationModifiedObserverTag.value());
}
m_SegmentationModifiedObserverTag.reset();
}
}
void QmitkSegmentationTaskListWidget::OnSegmentationModified()
{
if (!m_UnsavedChanges)
{
m_UnsavedChanges = true;
if (m_ActiveTaskIndex.value() == m_CurrentTaskIndex)
this->UpdateDetailsLabel();
}
}
void QmitkSegmentationTaskListWidget::SetActiveTaskIndex(const std::optional& index)
{
if (m_ActiveTaskIndex != index)
{
m_ActiveTaskIndex = index;
emit ActiveTaskChanged(m_ActiveTaskIndex);
}
}
void QmitkSegmentationTaskListWidget::SetCurrentTaskIndex(const std::optional& index)
{
if (m_CurrentTaskIndex != index)
{
m_CurrentTaskIndex = index;
this->OnCurrentTaskChanged();
emit CurrentTaskChanged(m_CurrentTaskIndex);
}
}
bool QmitkSegmentationTaskListWidget::ActiveTaskIsShown() const
{
return m_ActiveTaskIndex.has_value() && m_CurrentTaskIndex.has_value() && m_ActiveTaskIndex == m_CurrentTaskIndex;
}
bool QmitkSegmentationTaskListWidget::HandleUnsavedChanges()
{
if (m_UnsavedChanges)
{
const auto active = m_ActiveTaskIndex.value();
const auto current = m_CurrentTaskIndex.value();
auto title = QString("Load task %1").arg(current + 1);
if (m_TaskList->HasName(current))
title += ": " + QString::fromStdString(m_TaskList->GetName(current));
auto text = QString("The currently active task %1 ").arg(active + 1);
if (m_TaskList->HasName(active))
text += "(" + QString::fromStdString(m_TaskList->GetName(active)) + ") ";
text += "has unsaved changes.";
auto reply = QMessageBox::question(this, title, text, QMessageBox::Save | QMessageBox::Discard | QMessageBox::Cancel, QMessageBox::Cancel);
switch (reply)
{
case QMessageBox::Save:
this->SaveActiveTask(!fs::exists(m_TaskList->GetResult(active)));
break;
case QMessageBox::Discard:
m_UnsavedChanges = false;
break;
default:
return false;
}
}
return true;
}
void QmitkSegmentationTaskListWidget::SaveActiveTask(bool saveAsIntermediateResult)
{
if (!m_ActiveTaskIndex.has_value())
return;
QApplication::setOverrideCursor(Qt::BusyCursor);
try
{
const auto active = m_ActiveTaskIndex.value();
m_TaskList->SaveTask(active, this->GetSegmentationDataNode(active)->GetData(), saveAsIntermediateResult);
this->OnUnsavedChangesSaved();
}
catch (const mitk::Exception& e)
{
MITK_ERROR << e;
}
QApplication::restoreOverrideCursor();
}
diff --git a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.h b/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.h
index 8c25d315e7..384b6a3467 100644
--- a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.h
+++ b/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.h
@@ -1,87 +1,89 @@
/*============================================================================
The Medical Imaging Interaction Toolkit (MITK)
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
============================================================================*/
#ifndef QmitkSegmentationTaskListWidget_h
#define QmitkSegmentationTaskListWidget_h
#include
#include
#include
#include
#include
class QFileSystemWatcher;
namespace Ui
{
class QmitkSegmentationTaskListWidget;
}
class QmitkSegmentationTaskListWidget : public QWidget
{
Q_OBJECT
public:
explicit QmitkSegmentationTaskListWidget(QWidget* parent = nullptr);
~QmitkSegmentationTaskListWidget() override;
mitk::SegmentationTaskList* GetTaskList() const;
std::optional GetActiveTaskIndex() const;
std::optional GetCurrentTaskIndex() const;
mitk::DataNode* GetSegmentationDataNode(size_t index) const;
void OnUnsavedChangesSaved();
bool ActiveTaskIsShown() const;
+ void LoadNextUnfinishedTask();
signals:
void ActiveTaskChanged(const std::optional& index);
void CurrentTaskChanged(const std::optional& index);
private:
void OnSelectionChanged(const QmitkSingleNodeSelectionWidget::NodeList& nodes);
void ResetControls();
void SetTaskList(mitk::SegmentationTaskList* task);
void ResetFileSystemWatcher();
void OnResultDirectoryChanged(const QString&);
void UpdateProgressBar();
void OnTaskListChanged(mitk::SegmentationTaskList* task);
void OnPreviousButtonClicked();
void OnNextButtonClicked();
void OnCurrentTaskChanged();
void UpdateLoadButton();
+ void UpdateNavigationButtons();
void UpdateDetailsLabel();
void OnLoadButtonClicked();
mitk::DataNode* GetImageDataNode(size_t index) const;
void UnloadTasks(const mitk::DataNode* skip = nullptr);
void LoadTask(mitk::DataNode::Pointer imageNode = nullptr);
void SubscribeToActiveSegmentation();
void UnsubscribeFromActiveSegmentation();
void OnSegmentationModified();
void SetActiveTaskIndex(const std::optional& index);
void SetCurrentTaskIndex(const std::optional& index);
bool HandleUnsavedChanges();
void SaveActiveTask(bool saveAsIntermediateResult = false);
Ui::QmitkSegmentationTaskListWidget* m_Ui;
QFileSystemWatcher* m_FileSystemWatcher;
mitk::SegmentationTaskList::Pointer m_TaskList;
mitk::DataNode::Pointer m_TaskListNode;
std::optional m_CurrentTaskIndex;
std::optional m_ActiveTaskIndex;
std::optional m_SegmentationModifiedObserverTag;
bool m_UnsavedChanges;
};
#endif