diff --git a/Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.cpp b/Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.cpp index 4fa200eeb7..a907216f77 100644 --- a/Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.cpp +++ b/Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.cpp @@ -1,257 +1,282 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file.s ============================================================================*/ #include "QmitkSetupVirtualEnvUtil.h" #include "mitkLog.h" #include #include #include #include #include #include #include QmitkSetupVirtualEnvUtil::QmitkSetupVirtualEnvUtil() { m_BaseDir = QStandardPaths::writableLocation(QStandardPaths::GenericDataLocation) + QDir::separator() + qApp->organizationName() + QDir::separator(); } QmitkSetupVirtualEnvUtil::QmitkSetupVirtualEnvUtil(const QString &baseDir) { m_BaseDir = baseDir; } QString& QmitkSetupVirtualEnvUtil::GetBaseDir() { return m_BaseDir; } QString QmitkSetupVirtualEnvUtil::GetVirtualEnvPath() { return m_venvPath; } QString& QmitkSetupVirtualEnvUtil::GetSystemPythonPath() { return m_SysPythonPath; } QString& QmitkSetupVirtualEnvUtil::GetPythonPath() { return m_PythonPath; } QString& QmitkSetupVirtualEnvUtil::GetPipPath() { return m_PipPath; } void QmitkSetupVirtualEnvUtil::SetVirtualEnvPath(const QString &path) { m_venvPath = path; } void QmitkSetupVirtualEnvUtil::SetPipPath(const QString &path) { m_PipPath = path; } void QmitkSetupVirtualEnvUtil::SetPythonPath(const QString &path) { if (this->IsPythonPath(path)) { m_PythonPath = path; } else { MITK_INFO << "Python was not detected in " + path.toStdString(); } } void QmitkSetupVirtualEnvUtil::SetSystemPythonPath(const QString &path) { if (this->IsPythonPath(path)) { m_SysPythonPath = path; } else { MITK_INFO << "Python was not detected in " + path.toStdString(); } } void QmitkSetupVirtualEnvUtil::PrintProcessEvent(itk::Object * /*pCaller*/, const itk::EventObject &e, void *) { std::string testCOUT; std::string testCERR; const auto *pEvent = dynamic_cast(&e); if (pEvent) { testCOUT = testCOUT + pEvent->GetOutput(); MITK_INFO << testCOUT; } const auto *pErrEvent = dynamic_cast(&e); if (pErrEvent) { testCERR = testCERR + pErrEvent->GetOutput(); MITK_ERROR << testCERR; } } void QmitkSetupVirtualEnvUtil::InstallPytorch(const std::string &workingDir, void (*callback)(itk::Object *, const itk::EventObject &, void *)) { mitk::ProcessExecutor::ArgumentListType args; auto spExec = mitk::ProcessExecutor::New(); auto spCommand = itk::CStyleCommand::New(); spCommand->SetCallback(callback); spExec->AddObserver(mitk::ExternalProcessOutputEvent(), spCommand); args.push_back("-m"); args.push_back("pip"); args.push_back("install"); args.push_back("light-the-torch==0.7.5"); spExec->Execute(workingDir, "python", args); PipInstall("torch>=2.0.0", workingDir, callback, "ltt"); PipInstall("torchvision>=0.15.0", workingDir, callback, "ltt"); } void QmitkSetupVirtualEnvUtil::InstallPytorch() { this->InstallPytorch(GetPythonPath().toStdString(), &PrintProcessEvent); } bool QmitkSetupVirtualEnvUtil::IsVenvInstalled(const QString &pythonPath) { bool isVenvInstalled = false; QProcess pyProcess; #ifdef _WIN32 const QString PYTHON_EXE = "python.exe"; #else const QString PYTHON_EXE = "python3"; #endif pyProcess.start(pythonPath + QDir::separator() + PYTHON_EXE, QStringList() << "-m" << "venv", QProcess::ReadOnly); //insuffient args to provoke stderr out if (pyProcess.waitForFinished()) { auto venvCaptured = QString(QStringDecoder(QStringDecoder::Utf8)(pyProcess.readAllStandardError())); isVenvInstalled = venvCaptured.startsWith(QString("usage")); // if venv found, shows correct usage instructions } return isVenvInstalled; } void QmitkSetupVirtualEnvUtil::PipInstall(const std::string &library, const std::string &workingDir, void (*callback)(itk::Object *, const itk::EventObject &, void *), const std::string &command) { mitk::ProcessExecutor::ArgumentListType args; auto spExec = mitk::ProcessExecutor::New(); auto spCommand = itk::CStyleCommand::New(); spCommand->SetCallback(callback); spExec->AddObserver(mitk::ExternalProcessOutputEvent(), spCommand); args.push_back("install"); args.push_back(library); spExec->Execute(workingDir, command, args); } void QmitkSetupVirtualEnvUtil::PipInstall(const std::string &library, void (*callback)(itk::Object*, const itk::EventObject&, void*), const std::string& command) { this->PipInstall(library, this->GetPipPath().toStdString(), callback, command); } void QmitkSetupVirtualEnvUtil::ExecutePython(const std::string &pythonCode, const std::string &workingDir, void (*callback)(itk::Object *, const itk::EventObject &, void *), const std::string &command) { mitk::ProcessExecutor::ArgumentListType args; auto spExec = mitk::ProcessExecutor::New(); auto spCommand = itk::CStyleCommand::New(); spCommand->SetCallback(callback); spExec->AddObserver(mitk::ExternalProcessOutputEvent(), spCommand); args.push_back("-c"); args.push_back(pythonCode); spExec->Execute(workingDir, command, args); } void QmitkSetupVirtualEnvUtil::ExecutePython(const std::string &args, void (*callback)(itk::Object *, const itk::EventObject &, void *), const std::string &command) { this->ExecutePython(args, this->GetPythonPath().toStdString(), callback, command); } bool QmitkSetupVirtualEnvUtil::IsPythonPath(const QString &pythonPath) { QString fullPath = pythonPath; bool isExists = #ifdef _WIN32 QFile::exists(fullPath + QDir::separator() + QString("python.exe")); #else QFile::exists(fullPath + QDir::separator() + QString("python3")); #endif return isExists; } std::pair QmitkSetupVirtualEnvUtil::GetExactPythonPath(const QString &pyEnv) { QString fullPath = pyEnv; bool pythonDoesExist = false; bool isSupportedVersion = false; #ifdef _WIN32 const std::string PYTHON_EXE = "python.exe"; // check if python exist in given folder. pythonDoesExist = QFile::exists(fullPath + QDir::separator() + QString::fromStdString(PYTHON_EXE)); if (!pythonDoesExist && // check if in Scripts already, if not go there !(fullPath.endsWith("Scripts", Qt::CaseInsensitive) || fullPath.endsWith("Scripts/", Qt::CaseInsensitive))) { fullPath += QDir::separator() + QString("Scripts"); pythonDoesExist = QFile::exists(fullPath + QDir::separator() + QString("python.exe")); } #else const std::string PYTHON_EXE = "python3"; pythonDoesExist = QFile::exists(fullPath + QDir::separator() + QString::fromStdString(PYTHON_EXE)); if (!pythonDoesExist && !(fullPath.endsWith("bin", Qt::CaseInsensitive) || fullPath.endsWith("bin/", Qt::CaseInsensitive))) { fullPath += QDir::separator() + QString("bin"); pythonDoesExist = QFile::exists(fullPath + QDir::separator() + QString("python3")); } #endif std::pair pythonPath; if (pythonDoesExist) { std::regex sanitizer(R"(3\.(\d+))"); QProcess pyProcess; pyProcess.start(fullPath + QDir::separator() + QString::fromStdString(PYTHON_EXE), QStringList() << "--version", QProcess::ReadOnly); if (pyProcess.waitForFinished()) { auto pyVersionCaptured = QString(QStringDecoder(QStringDecoder::Utf8)(pyProcess.readAllStandardOutput())).toStdString(); std::smatch match; // Expecting "Python 3.xx.xx" or "Python 3.xx" if (std::regex_search(pyVersionCaptured, match, sanitizer) && !match.empty()) { std::string pyVersionNumber = match[0]; int pySubVersion = std::stoi(match[1]); isSupportedVersion = (pySubVersion > 8) ? (pySubVersion < 13) : false; pythonPath.second = QString::fromStdString(pyVersionNumber); } } } pythonPath.first = pythonDoesExist &&isSupportedVersion ? fullPath : ""; return pythonPath; } + +QString QmitkSetupVirtualEnvUtil::GetPipPackageVersion(const QString &pythonPath, const QString &packageName) +{ +#ifdef _WIN32 + const QString PIP_EXE = "pip.exe"; +#else + const QString PIP_EXE = "pip3"; +#endif + QString version; + QProcess pipProcess; + pipProcess.start(pythonPath + QDir::separator() + PIP_EXE, QStringList() << "show" << packageName, QProcess::ReadOnly); + if (pipProcess.waitForFinished()) + { + while (pipProcess.canReadLine()) + { + QString line = pipProcess.readLine(); + if (line.startsWith("Version")) + { + version = (line.split(":")[1]).trimmed(); + break; + } + } + } + return version; +} diff --git a/Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.h b/Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.h index c743854bf7..db12623ad7 100644 --- a/Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.h +++ b/Modules/SegmentationUI/Qmitk/QmitkSetupVirtualEnvUtil.h @@ -1,206 +1,212 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file.s ============================================================================*/ #ifndef QmitkSetupVirtualEnvUtil_h_Included #define QmitkSetupVirtualEnvUtil_h_Included #include "mitkLog.h" #include "mitkProcessExecutor.h" #include #include /** * @brief Abstract Class to Setup a python virtual environment and pip install required packages. * Derive this class for creating installer for the respective tool. */ class MITKSEGMENTATIONUI_EXPORT QmitkSetupVirtualEnvUtil { public: QmitkSetupVirtualEnvUtil(const QString& baseDir); QmitkSetupVirtualEnvUtil(); /** * @brief Implement the method in child class * to setup the virtual environment. */ virtual bool SetupVirtualEnv(const QString& venvName) = 0; /** * @brief Get the Virtual Env Path object. Override this method in the respective * tool installer class. * * @return QString */ virtual QString GetVirtualEnvPath(); /** * @brief Function to Pip install a library package given the location of * pip3 executable. * Any callback function can be passed to process the output. * * @param library * @param workingDir * @param callback * @param command */ void PipInstall(const std::string &library, const std::string &workingDir, void (*callback)(itk::Object *, const itk::EventObject &, void *), const std::string &command = "pip3"); /** * @brief Overloaded function to Pip install a library function. * * @param library * @param callback * @param command */ void PipInstall(const std::string &library, void (*callback)(itk::Object *, const itk::EventObject &, void *), const std::string &command = "pip3"); /** * @brief Function to execute any python code given a python path. * Any callback function can be passed to process the output. * * @param args * @param pythonPath * @param callback * @param command */ void ExecutePython(const std::string &args, const std::string &pythonPath, void (*callback)(itk::Object *, const itk::EventObject &, void *), const std::string &command = "python"); /** * @brief Overloaded function to Execute Python code. * Any callback function can be passed to process the output. * * @param args * @param callback * @param command */ void ExecutePython(const std::string &args, void (*callback)(itk::Object *, const itk::EventObject &, void *), const std::string &command = "python"); /** * @brief Installs pytorch using light-the-torch package, correctly identifying cuda version. * Requires location of pip3 executable. * Any callback function can be passed to process the output. * * @param workingDir * @param callback */ void InstallPytorch(const std::string &workingDir, void (*callback)(itk::Object *, const itk::EventObject &, void *)); /** * @brief Overloaded function to install pytorch using light-the-torch package, correctly * identifying cuda version. */ void InstallPytorch(); /** * @brief Get the Base Dir object * * @return QString& */ QString& GetBaseDir(); /** * @brief Get the System Python Path object * * @return QString& */ QString& GetSystemPythonPath(); /** * @brief Get the Python Path object * * @return QString& */ QString& GetPythonPath(); /** * @brief Get the Pip Path object * * @return QString& */ QString& GetPipPath(); /** * @brief Set the System Python Path object * * @param path */ void SetSystemPythonPath(const QString& path); /** * @brief Set the Python Path object * * @param path */ void SetPythonPath(const QString& path); /** * @brief Set the Pip Path object * * @param path */ void SetPipPath(const QString& path); /** * @brief Set the Virtual Env Path object * * @param path */ void SetVirtualEnvPath(const QString &path); /** * @brief Check if the path provide has python executable or not. * * @param pythonPath * @return true * @return false */ bool IsPythonPath(const QString &pythonPath); /** * @brief Checks if venv module is available for the python. * */ static bool IsVenvInstalled(const QString &pythonPath); + /** + * @brief Returns version of the pip installed package + * + */ + static QString GetPipPackageVersion(const QString &pythonPath, const QString &packageName); + /** * @brief Function can be used as callback to simply print out all the process execution output * parsed out from itk::EventObject. * */ static void PrintProcessEvent(itk::Object *, const itk::EventObject &e, void *); /** * @brief Get the exact Python path and version for any OS from the virtual environment path. * @return A pair of the exact python path and its Python version or empty, if an supported * version of Python could not be found. */ static std::pair GetExactPythonPath(const QString &pyEnv); private: QString m_PythonPath; QString m_PipPath; QString m_BaseDir; QString m_venvPath; QString m_SysPythonPath; }; #endif diff --git a/Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.cpp b/Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.cpp index 3cc8a62b9e..2f9c807854 100644 --- a/Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.cpp +++ b/Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.cpp @@ -1,511 +1,516 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkTotalSegmentatorToolGUI.h" #include "mitkProcessExecutor.h" #include "mitkTotalSegmentatorTool.h" #include #include #include #include #include #include #include MITK_TOOL_GUI_MACRO(MITKSEGMENTATIONUI_EXPORT, QmitkTotalSegmentatorToolGUI, "") QmitkTotalSegmentatorToolGUI::QmitkTotalSegmentatorToolGUI() : QmitkMultiLabelSegWithPreviewToolGUIBase(), m_SuperclassEnableConfirmSegBtnFnc(m_EnableConfirmSegBtnFnc) { // Nvidia-smi command returning zero doesn't always imply lack of GPUs. // Pytorch uses its own libraries to communicate to the GPUs. Hence, only a warning can be given. if (m_GpuLoader.GetGPUCount() == 0) { std::string warning = "WARNING: No GPUs were detected on your machine. The TotalSegmentator tool can be very slow."; this->ShowErrorMessage(warning); } m_EnableConfirmSegBtnFnc = [this](bool enabled) { return !m_FirstPreviewComputation ? m_SuperclassEnableConfirmSegBtnFnc(enabled) : false; }; } void QmitkTotalSegmentatorToolGUI::ConnectNewTool(mitk::SegWithPreviewTool *newTool) { Superclass::ConnectNewTool(newTool); m_FirstPreviewComputation = true; } void QmitkTotalSegmentatorToolGUI::InitializeUI(QBoxLayout *mainLayout) { m_Controls.setupUi(this); #ifndef _WIN32 m_Controls.sysPythonComboBox->addItem("/usr/bin"); #endif this->AutoParsePythonPaths(); m_Controls.sysPythonComboBox->addItem("Select"); m_Controls.sysPythonComboBox->setCurrentIndex(0); m_Controls.pythonEnvComboBox->addItem("Select"); m_Controls.pythonEnvComboBox->setDuplicatesEnabled(false); m_Controls.pythonEnvComboBox->setDisabled(true); m_Controls.previewButton->setDisabled(true); m_Controls.statusLabel->setTextFormat(Qt::RichText); m_Controls.subtaskComboBox->addItems(VALID_TASKS); QString welcomeText; this->SetGPUInfo(); if (m_GpuLoader.GetGPUCount() != 0) { welcomeText = "STATUS: Welcome to TotalSegmentator tool. You're in luck: " + QString::number(m_GpuLoader.GetGPUCount()) + " GPU(s) were detected."; } else { welcomeText = "STATUS: Welcome to TotalSegmentator tool. Sorry, " + QString::number(m_GpuLoader.GetGPUCount()) + " GPUs were detected."; } connect(m_Controls.previewButton, SIGNAL(clicked()), this, SLOT(OnPreviewBtnClicked())); connect(m_Controls.clearButton, SIGNAL(clicked()), this, SLOT(OnClearInstall())); connect(m_Controls.installButton, SIGNAL(clicked()), this, SLOT(OnInstallBtnClicked())); connect(m_Controls.overrideBox, SIGNAL(stateChanged(int)), this, SLOT(OnOverrideChecked(int))); connect(m_Controls.pythonEnvComboBox, QOverload::of(&QComboBox::activated), [=](int index) { OnPythonPathChanged(m_Controls.pythonEnvComboBox->itemText(index)); }); connect(m_Controls.sysPythonComboBox, QOverload::of(&QComboBox::activated), [=](int index) { OnSystemPythonChanged(m_Controls.sysPythonComboBox->itemText(index)); }); QString lastSelectedPyEnv = m_Settings.value("TotalSeg/LastCustomPythonPath").toString(); if (!lastSelectedPyEnv.isEmpty() && lastSelectedPyEnv!= "Select") { m_Controls.pythonEnvComboBox->insertItem(0, lastSelectedPyEnv); } m_Controls.fastBox->setChecked(m_Settings.value("TotalSeg/LastFast").toBool()); const QString storageDir = m_Installer.GetVirtualEnvPath(); m_IsInstalled = this->IsTotalSegmentatorInstalled(storageDir); if (m_IsInstalled) { m_PythonPath = QmitkSetupVirtualEnvUtil::GetExactPythonPath(storageDir).first; m_Installer.SetVirtualEnvPath(m_PythonPath); this->EnableAll(m_IsInstalled); welcomeText += " TotalSegmentator is already found installed."; } else { welcomeText += " TotalSegmentator is not installed. Please click on \"Install TotalSegmentator\" above."; } this->WriteStatusMessage(welcomeText); QIcon deleteIcon = QmitkStyleManager::ThemeIcon(QStringLiteral(":/org_mitk_icons/icons/awesome/scalable/actions/edit-delete.svg")); QIcon arrowIcon = QmitkStyleManager::ThemeIcon(QStringLiteral(":/org_mitk_icons/icons/tango/scalable/actions/media-playback-start.svg")); m_Controls.clearButton->setIcon(deleteIcon); m_Controls.previewButton->setIcon(arrowIcon); mainLayout->addLayout(m_Controls.verticalLayout); Superclass::InitializeUI(mainLayout); } void QmitkTotalSegmentatorToolGUI::SetGPUInfo() { std::vector specs = m_GpuLoader.GetAllGPUSpecs(); for (const QmitkGPUSpec &gpuSpec : specs) { m_Controls.gpuComboBox->addItem(QString::number(gpuSpec.id) + ": " + gpuSpec.name + " (" + gpuSpec.memory + ")"); } if (specs.empty()) { m_Controls.gpuComboBox->setEditable(true); m_Controls.gpuComboBox->addItem(QString::number(0)); m_Controls.gpuComboBox->setValidator(new QIntValidator(0, 999, this)); } } unsigned int QmitkTotalSegmentatorToolGUI::FetchSelectedGPUFromUI() const { QString gpuInfo = m_Controls.gpuComboBox->currentText(); if (m_GpuLoader.GetGPUCount() == 0) { return static_cast(gpuInfo.toInt()); } else { QString gpuId = gpuInfo.split(":", Qt::SkipEmptyParts).first(); return static_cast(gpuId.toInt()); } } void QmitkTotalSegmentatorToolGUI::EnableAll(bool isEnable) { m_Controls.previewButton->setEnabled(isEnable); m_Controls.subtaskComboBox->setEnabled(isEnable); m_Controls.installButton->setEnabled((!isEnable)); } void QmitkTotalSegmentatorToolGUI::OnInstallBtnClicked() { bool isInstalled = false; const auto [path, version] = OnSystemPythonChanged(m_Controls.sysPythonComboBox->currentText()); if (path.isEmpty()) { this->WriteErrorMessage("ERROR: Couldn't find compatible Python."); return; } if (!QmitkSetupVirtualEnvUtil::IsVenvInstalled(path)) { this->WriteErrorMessage("venv module not found for the selected python to create a new virtual " "environment. Please install venv or select another compatibile python"); return; } // check if python 3.13 and ask for confirmation if (version.startsWith("3.13") && QMessageBox::No == QMessageBox::question( nullptr, "Installing TotalSegmentator", QString("WARNING: This is an unsupported version of Python that may not work. " "We recommend using a supported Python version between 3.9 and 3.12.\n\n" "Continue anyway?"), QMessageBox::Yes | QMessageBox::No, QMessageBox::No)) { return; } this->WriteStatusMessage("STATUS: Installing TotalSegmentator..."); m_Installer.SetSystemPythonPath(path); isInstalled = m_Installer.SetupVirtualEnv(m_Installer.VENV_NAME); if (isInstalled) { m_PythonPath = QmitkSetupVirtualEnvUtil::GetExactPythonPath(m_Installer.GetVirtualEnvPath()).first; this->WriteStatusMessage("STATUS: Successfully installed TotalSegmentator."); } else { this->WriteErrorMessage("ERROR: Couldn't install TotalSegmentator."); } this->EnableAll(isInstalled); } void QmitkTotalSegmentatorToolGUI::OnPreviewBtnClicked() { auto tool = this->GetConnectedToolAs(); if (nullptr == tool) { return; } try { m_Controls.previewButton->setEnabled(false); qApp->processEvents(); if (!this->IsTotalSegmentatorInstalled(m_PythonPath)) { throw std::runtime_error(WARNING_TOTALSEG_NOT_FOUND); } bool isFast = m_Controls.fastBox->isChecked(); QString subTask = m_Controls.subtaskComboBox->currentText(); if (subTask != VALID_TASKS[0] && subTask != VALID_TASKS[1]) { isFast = true; } tool->SetPythonPath(m_PythonPath.toStdString()); tool->SetGpuId(FetchSelectedGPUFromUI()); tool->SetFast(isFast); tool->SetSubTask(subTask.toStdString()); this->WriteStatusMessage(QString("STATUS: Starting Segmentation task... This might take a while.")); m_FirstPreviewComputation = false; tool->UpdatePreview(); m_Controls.previewButton->setEnabled(true); } catch (const std::exception &e) { std::stringstream errorMsg; errorMsg << "STATUS: Error while processing parameters for TotalSegmentator segmentation. Reason: " << e.what(); this->ShowErrorMessage(errorMsg.str()); this->WriteErrorMessage(QString::fromStdString(errorMsg.str())); m_Controls.previewButton->setEnabled(true); m_FirstPreviewComputation = true; return; } catch (...) { std::string errorMsg = "Unkown error occured while generation TotalSegmentator segmentation."; this->ShowErrorMessage(errorMsg); m_Controls.previewButton->setEnabled(true); m_FirstPreviewComputation = true; return; } this->SetLabelSetPreview(tool->GetPreviewSegmentation()); this->ActualizePreviewLabelVisibility(); this->WriteStatusMessage("STATUS: Segmentation task finished successfully."); QString pythonPathTextItem = m_Controls.pythonEnvComboBox->currentText(); if (!pythonPathTextItem.isEmpty() && pythonPathTextItem != "Select") // only cache if the prediction ended without errors. { QString lastSelectedPyEnv = m_Settings.value("TotalSeg/LastCustomPythonPath").toString(); if (lastSelectedPyEnv != pythonPathTextItem) { m_Settings.setValue("TotalSeg/LastCustomPythonPath", pythonPathTextItem); } } m_Settings.setValue("TotalSeg/LastFast", m_Controls.fastBox->isChecked()); } void QmitkTotalSegmentatorToolGUI::ShowErrorMessage(const std::string &message, QMessageBox::Icon icon) { this->setCursor(Qt::ArrowCursor); QMessageBox *messageBox = new QMessageBox(icon, nullptr, message.c_str()); messageBox->exec(); delete messageBox; MITK_WARN << message; } void QmitkTotalSegmentatorToolGUI::WriteStatusMessage(const QString &message) { m_Controls.statusLabel->setText(message); m_Controls.statusLabel->setStyleSheet("font-weight: bold; color: white"); qApp->processEvents(); } void QmitkTotalSegmentatorToolGUI::WriteErrorMessage(const QString &message) { m_Controls.statusLabel->setText(message); m_Controls.statusLabel->setStyleSheet("font-weight: bold; color: red"); qApp->processEvents(); } bool QmitkTotalSegmentatorToolGUI::IsTotalSegmentatorInstalled(const QString &pythonPath) { QString fullPath = pythonPath; bool isPythonExists = false, isExists = false; #ifdef _WIN32 isPythonExists = QFile::exists(fullPath + QDir::separator() + QString("python.exe")); if (!(fullPath.endsWith("Scripts", Qt::CaseInsensitive) || fullPath.endsWith("Scripts/", Qt::CaseInsensitive))) { fullPath += QDir::separator() + QString("Scripts"); isPythonExists = (!isPythonExists) ? QFile::exists(fullPath + QDir::separator() + QString("python.exe")) : isPythonExists; } isExists = QFile::exists(fullPath + QDir::separator() + QString("TotalSegmentator.exe")) && isPythonExists; #else isPythonExists = QFile::exists(fullPath + QDir::separator() + QString("python3")); if (!(fullPath.endsWith("bin", Qt::CaseInsensitive) || fullPath.endsWith("bin/", Qt::CaseInsensitive))) { fullPath += QDir::separator() + QString("bin"); isPythonExists = (!isPythonExists) ? QFile::exists(fullPath + QDir::separator() + QString("python3")) : isPythonExists; } isExists = QFile::exists(fullPath + QDir::separator() + QString("TotalSegmentator")) && isPythonExists; #endif + if (isExists && m_Installer.TOTALSEGMENTATOR_VERSION != + QmitkSetupVirtualEnvUtil::GetPipPackageVersion(fullPath, "TotalSegmentator")) + { + isExists = false; + } return isExists; } void QmitkTotalSegmentatorToolGUI::AutoParsePythonPaths() { QString homeDir = QDir::homePath(); std::vector searchDirs; #ifdef _WIN32 searchDirs.push_back(QString("C:") + QDir::separator() + QString("ProgramData") + QDir::separator() + QString("anaconda3")); #else // Add search locations for possible standard python paths here searchDirs.push_back(homeDir + QDir::separator() + "environments"); searchDirs.push_back(homeDir + QDir::separator() + "anaconda3"); searchDirs.push_back(homeDir + QDir::separator() + "miniconda3"); searchDirs.push_back(homeDir + QDir::separator() + "opt" + QDir::separator() + "miniconda3"); searchDirs.push_back(homeDir + QDir::separator() + "opt" + QDir::separator() + "anaconda3"); #endif for (QString searchDir : searchDirs) { if (searchDir.endsWith("anaconda3", Qt::CaseInsensitive)) { if (QDir(searchDir).exists()) { m_Controls.sysPythonComboBox->addItem("(base): " + searchDir); searchDir.append((QDir::separator() + QString("envs"))); } } for (QDirIterator subIt(searchDir, QDir::AllDirs, QDirIterator::NoIteratorFlags); subIt.hasNext();) { subIt.next(); QString envName = subIt.fileName(); if (!envName.startsWith('.')) // Filter out irrelevent hidden folders, if any. { m_Controls.pythonEnvComboBox->addItem("(" + envName + "): " + subIt.filePath()); } } } } std::pair QmitkTotalSegmentatorToolGUI::OnSystemPythonChanged(const QString &pyEnv) { std::pair pyPath; if (pyEnv == QString("Select")) { m_Controls.previewButton->setDisabled(true); QString path = QFileDialog::getExistingDirectory(m_Controls.sysPythonComboBox->parentWidget(), "Python Path", "dir"); if (!path.isEmpty()) { this->OnSystemPythonChanged(path); // recall same function for new path validation bool oldState = m_Controls.sysPythonComboBox->blockSignals(true); // block signal firing while inserting item m_Controls.sysPythonComboBox->insertItem(0, path); m_Controls.sysPythonComboBox->setCurrentIndex(0); m_Controls.sysPythonComboBox->blockSignals( oldState); // unblock signal firing after inserting item. Remove this after Qt6 migration } } else { QString uiPyPath = this->GetPythonPathFromUI(pyEnv); pyPath = QmitkSetupVirtualEnvUtil::GetExactPythonPath(uiPyPath); } return pyPath; } void QmitkTotalSegmentatorToolGUI::OnPythonPathChanged(const QString &pyEnv) { if (pyEnv == QString("Select")) { m_Controls.previewButton->setDisabled(true); QString path = QFileDialog::getExistingDirectory(m_Controls.pythonEnvComboBox->parentWidget(), "Python Path", "dir"); if (!path.isEmpty()) { this->OnPythonPathChanged(path); // recall same function for new path validation bool oldState = m_Controls.pythonEnvComboBox->blockSignals(true); // block signal firing while inserting item m_Controls.pythonEnvComboBox->insertItem(0, path); m_Controls.pythonEnvComboBox->setCurrentIndex(0); m_Controls.pythonEnvComboBox->blockSignals( oldState); // unblock signal firing after inserting item. Remove this after Qt6 migration } } else if (!this->IsTotalSegmentatorInstalled(this->GetPythonPathFromUI(pyEnv))) { this->ShowErrorMessage(WARNING_TOTALSEG_NOT_FOUND); m_Controls.previewButton->setDisabled(true); } else {// Show positive status meeage m_Controls.previewButton->setDisabled(false); QString uiPyPath = this->GetPythonPathFromUI(pyEnv); m_PythonPath = QmitkSetupVirtualEnvUtil::GetExactPythonPath(uiPyPath).first; } } QString QmitkTotalSegmentatorToolGUI::GetPythonPathFromUI(const QString &pyUI) const { QString fullPath = pyUI; if (-1 != fullPath.indexOf(")")) { fullPath = fullPath.mid(fullPath.indexOf(")") + 2); } return fullPath.simplified(); } void QmitkTotalSegmentatorToolGUI::OnOverrideChecked(int state) { bool isEnabled = false; if (state == Qt::Checked) { isEnabled = true; m_Controls.previewButton->setDisabled(true); m_PythonPath.clear(); } else { m_PythonPath.clear(); m_Controls.previewButton->setDisabled(true); if (m_IsInstalled) { const QString pythonPath = m_Installer.GetVirtualEnvPath(); auto pathObject = QmitkSetupVirtualEnvUtil::GetExactPythonPath(pythonPath); m_PythonPath = pathObject.first; this->EnableAll(m_IsInstalled); } } m_Controls.pythonEnvComboBox->setEnabled(isEnabled); } void QmitkTotalSegmentatorToolGUI::OnClearInstall() { QDir folderPath(m_Installer.GetVirtualEnvPath()); if (folderPath.removeRecursively()) { m_Controls.installButton->setEnabled(true); m_IsInstalled = false; if (!m_Controls.overrideBox->isChecked()) { m_Controls.previewButton->setEnabled(false); } } else { MITK_ERROR << "The virtual environment couldn't be removed. Please check if you have the required access privileges or, some other process is accessing the folders."; } } bool QmitkTotalSegmentatorToolInstaller::SetupVirtualEnv(const QString& venvName) { if (GetSystemPythonPath().isEmpty()) { return false; } if (!QmitkSetupVirtualEnvUtil::IsVenvInstalled(GetSystemPythonPath())) { return false; } QDir folderPath(GetBaseDir()); folderPath.mkdir(venvName); if (!folderPath.cd(venvName)) { return false; // Check if directory creation was successful. } mitk::ProcessExecutor::ArgumentListType args; auto spExec = mitk::ProcessExecutor::New(); auto spCommand = itk::CStyleCommand::New(); spCommand->SetCallback(&PrintProcessEvent); spExec->AddObserver(mitk::ExternalProcessOutputEvent(), spCommand); args.push_back("-m"); args.push_back("venv"); args.push_back(venvName.toStdString()); #ifdef _WIN32 QString pythonFile = GetSystemPythonPath() + QDir::separator() + "python.exe"; QString pythonExeFolder = "Scripts"; #else QString pythonFile = GetSystemPythonPath() + QDir::separator() + "python3"; QString pythonExeFolder = "bin"; #endif spExec->Execute(GetBaseDir().toStdString(), pythonFile.toStdString(), args); // Setup local virtual environment if (folderPath.cd(pythonExeFolder)) { this->SetPythonPath(folderPath.absolutePath()); this->SetPipPath(folderPath.absolutePath()); this->InstallPytorch(); for (auto &package : PACKAGES) { this->PipInstall(package.toStdString(), &PrintProcessEvent); } std::string pythonCode; // python syntax to check if torch is installed with CUDA. pythonCode.append("import torch;"); pythonCode.append("print('Pytorch was installed with CUDA') if torch.cuda.is_available() else print('PyTorch was " "installed WITHOUT CUDA');"); this->ExecutePython(pythonCode, &PrintProcessEvent); return true; } return false; } QString QmitkTotalSegmentatorToolInstaller::GetVirtualEnvPath() { return STORAGE_DIR + VENV_NAME; }