Fixed T25004
745c12e86a8a
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Description

Merge branch 'T25004-Move_FitMIData'

Conflicts:
Modules/ModuleList.cmake

Signed-off-by: Ralf Floca <r.floca@dkfz-heidelberg.de>

Details

Provenance

floca	Authored on Jul 2 2018, 3:31 PM
floca	Pushed on Jul 2 2018, 3:33 PM

Parents

rMITK3c252649449d: Merge branch 'T25018-memoryfix'
rMITKc2a80acbf737: Refactor module nameing to "ModelFit"

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Tasks

T25004: Move FitMIData to mitk.git

Event Timeline

floca committed rMITK745c12e86a8a: Fixed T25004 (authored by floca).Jul 2 2018, 3:31 PM

floca added a task: T25004: Move FitMIData to mitk.git.

Merged Changes

c2a80acbf737 Refactor module nameing to "ModelFit"
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floca
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6d14423ec7ff Corrected plugin settings
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floca
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d00b2e78e82a merge FormularParser into FitMIData
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floca
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f9e7100458bf Moved pharmacokientics Modules and Plugins
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• debusc
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f4024c06edb1 Moved generic FitMIData code
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floca
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Packages

Modules/

ModelFit

O3: MITK Reviewer Group II

CMakeLists.txt

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autoload

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CMakeLists.txt

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files.cmake

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mitkModelFitIOActivator.cpp

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Models

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CMakeLists.txt

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files.cmake

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mitkModelFitModelsActivator.cpp

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cmdapps

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CMakeLists.txt

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GenericFittingMiniApp.cpp

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PixelDumpMiniApp.cpp

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files.cmake

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include

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itkMaskedNaryStatisticsImageFilter.h

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itkMaskedNaryStatisticsImageFilter.hxx

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itkMaskedStatisticsImageFilter.h

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itkMaskedStatisticsImageFilter.hxx

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itkMultiOutputNaryFunctorImageFilter.h

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itkMultiOutputNaryFunctorImageFilter.tpp

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mitkBinaryImageToLabelSetImageFilter.h

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mitkChiSquareFitCostFunction.h

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mitkConcreteModelFactoryBase.h

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mitkConcreteModelParameterizerBase.h

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mitkConstraintCheckerBase.h

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mitkConstraintCheckerInterface.h

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mitkDummyModelFitFunctor.h

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mitkExtractTimeGrid.h

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mitkFormulaParser.h

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mitkFresnel.h

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mitkGaussianNoiseFunctor.h

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mitkGenericParamModel.h

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mitkGenericParamModelFactory.h

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mitkGenericParamModelParameterizer.h

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mitkIModelFitProvider.h

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mitkIModelProvider.h

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mitkImageBasedParameterizationDelegate.h

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mitkIndexedValueFunctorBase.h

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mitkIndexedValueFunctorPolicy.h

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mitkInitialParameterizationDelegateBase.h

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mitkLevenbergMarquardtModelFitFunctor.h

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mitkLinearModel.h

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mitkLinearModelFactory.h

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mitkLinearModelParameterizer.h

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mitkMVConstrainedCostFunctionDecorator.h

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mitkMVModelFitCostFunction.h

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mitkMaskedDynamicImageStatisticsGenerator.h

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mitkModelBase.h

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mitkModelBasedValueFunctorBase.h

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mitkModelDataGenerationFunctor.h

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mitkModelFactoryBase.h

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mitkModelFitCmdAppsHelper.h

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mitkModelFitConstants.h

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mitkModelFitCostFunctionInterface.h

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mitkModelFitException.h

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mitkModelFitFunctorBase.h

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mitkModelFitFunctorPolicy.h

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mitkModelFitInfo.h

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mitkModelFitInfoSignalGenerationFunctor.h

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mitkModelFitParameter.h

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mitkModelFitParameterValueExtraction.h

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mitkModelFitProviderBase.h

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mitkModelFitProviderBase.tpp

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mitkModelFitResultHelper.h

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mitkModelFitStaticParameterMap.h

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mitkModelFitUIDHelper.h

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mitkModelGenerator.h

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mitkModelParameterizerBase.h

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mitkModelTraitsInterface.h

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mitkNormalizedSumOfSquaredDifferencesFitCostFunction.h

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mitkParameterFitImageGeneratorBase.h

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mitkPixelBasedParameterFitImageGenerator.h

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mitkROIBasedParameterFitImageGenerator.h

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mitkReducedChiSquareFitCostFunction.h

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mitkSVModelFitCostFunction.h

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mitkScalarListLookupTable.h

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mitkScalarListLookupTableProperty.h

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mitkScalarListLookupTablePropertySerializer.h

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mitkSimpleBarrierConstraintChecker.h

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mitkSimpleFunctorBase.h

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mitkSimpleFunctorPolicy.h

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mitkSquaredDifferencesFitCostFunction.h

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mitkSumOfSquaredDifferencesFitCostFunction.h

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mitkT2DecayModel.h

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mitkT2DecayModelFactory.h

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mitkT2DecayModelParameterizer.h

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mitkTestArtifactGenerator.h

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mitkTestModel.h

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mitkTestModelFactory.h

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mitkTimeGridHelper.h

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mitkValueBasedParameterizationDelegate.h

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src

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Common

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mitkBinaryImageToLabelSetImageFilter.cpp

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mitkExtractTimeGrid.cpp

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mitkFormulaParser.cpp

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mitkFresnel.cpp

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mitkIModelFitProvider.cpp

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mitkMaskedDynamicImageStatisticsGenerator.cpp

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mitkModelFitCmdAppsHelper.cpp

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mitkModelFitConstants.cpp

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mitkModelFitInfo.cpp

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mitkModelFitParameter.cpp

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mitkModelFitParameterValueExtraction.cpp

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mitkModelFitResultHelper.cpp

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mitkModelFitStaticParameterMap.cpp

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mitkModelFitUIDHelper.cpp

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mitkModelGenerator.cpp

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mitkParameterFitImageGeneratorBase.cpp

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mitkPixelBasedParameterFitImageGenerator.cpp

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mitkROIBasedParameterFitImageGenerator.cpp

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mitkScalarListLookupTable.cpp

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mitkScalarListLookupTableProperty.cpp

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mitkScalarListLookupTablePropertySerializer.cpp

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mitkTimeGridHelper.cpp

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Functors

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mitkChiSquareFitCostFunction.cpp

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mitkConstraintCheckerBase.cpp

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mitkDummyModelFitFunctor.cpp

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mitkIndexedValueFunctorPolicy.cpp

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mitkLevenbergMarquardtModelFitFunctor.cpp

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mitkMVConstrainedCostFunctionDecorator.cpp

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mitkMVModelFitCostFunction.cpp

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mitkModelDataGenerationFunctor.cpp

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mitkModelFitFunctorBase.cpp

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mitkModelFitInfoSignalGenerationFunctor.cpp

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mitkNormalizedSumOfSquaredDifferencesFitCostFunction.cpp

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mitkReducedChiSquareFitCostFunction.cpp

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mitkSVModelFitCostFunction.cpp

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mitkSimpleBarrierConstraintChecker.cpp

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mitkSimpleFunctorBase.cpp

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mitkSimpleFunctorPolicy.cpp

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mitkSquaredDifferencesFitCostFunction.cpp

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mitkSumOfSquaredDifferencesFitCostFunction.cpp

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Models

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mitkGenericParamModel.cpp

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mitkGenericParamModelFactory.cpp

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mitkGenericParamModelParameterizer.cpp

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mitkImageBasedParameterizationDelegate.cpp

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mitkInitialParameterizationDelegateBase.cpp

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mitkLinearModel.cpp

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mitkLinearModelFactory.cpp

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mitkModelBase.cpp

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mitkModelFactoryBase.cpp

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mitkModelParameterizerBase.cpp

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mitkT2DecayModel.cpp

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mitkT2DecayModelFactory.cpp

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mitkT2DecayModelParameterizer.cpp

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mitkValueBasedParameterizationDelegate.cpp

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TestingHelper

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mitkTestArtifactGenerator.cpp

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mitkTestModel.cpp

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mitkTestModelFactory.cpp

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test

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CMakeLists.txt

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files.cmake

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itkMaskedNaryStatisticsImageFilterTest.cpp

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itkMaskedStatisticsImageFilterTest.cpp

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itkMultiOutputNaryFunctorImageFilterTest.cpp

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mitkConcreteModelFactoryBaseTest.cpp

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mitkFormulaParserTest.cpp

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mitkLevenbergMarquardtModelFitFunctorTest.cpp

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mitkMVConstrainedCostFunctionDecoratorTest.cpp

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mitkMaskedDynamicImageStatisticsGeneratorTest.cpp

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mitkModelFitInfoTest.cpp

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mitkModelFitStaticParameterMapTest.cpp

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mitkModelFitUIDHelperTest.cpp

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mitkPixelBasedParameterFitImageGeneratorTest.cpp

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mitkROIBasedParameterFitImageGeneratorTest.cpp

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mitkSimpleBarrierConstraintCheckerTest.cpp

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ModelFitUI

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CMakeLists.txt

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Qmitk

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QmitkInitialValuesDelegate.cpp

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QmitkInitialValuesDelegate.h

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QmitkInitialValuesManagerWidget.cpp

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QmitkInitialValuesManagerWidget.h

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QmitkInitialValuesManagerWidget.ui

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QmitkInitialValuesModel.cpp

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QmitkInitialValuesModel.h

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QmitkInitialValuesTypeDelegate.cpp

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QmitkInitialValuesTypeDelegate.h

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QmitkParameterFitBackgroundJob.cpp

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QmitkParameterFitBackgroundJob.h

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QmitkSimpleBarrierManagerWidget.cpp

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QmitkSimpleBarrierManagerWidget.h

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QmitkSimpleBarrierManagerWidget.ui

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QmitkSimpleBarrierModel.cpp

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QmitkSimpleBarrierModel.h

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QmitkSimpleBarrierParametersDelegate.cpp

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QmitkSimpleBarrierParametersDelegate.h

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QmitkSimpleBarrierTypeDelegate.cpp

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QmitkSimpleBarrierTypeDelegate.h

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files.cmake

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ModuleList.cmake

Pharmacokinetics

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CMakeLists.txt

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autoload

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Models

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CMakeLists.txt

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files.cmake

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mitkPharmacokineticModelsActivator.cpp

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cmdapps

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CMakeLists.txt

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CurveDescriptorMiniApp.cpp

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MRPerfusionMiniApp.cpp

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MRSignal2ConcentrationMiniApp.cpp

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files.cmake

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include

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mitkAIFBasedModelBase.h

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mitkAIFBasedModelParameterizerBase.h

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mitkAIFParametrizerHelper.h

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mitkAreaUnderFirstMomentDescriptionParameter.h

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mitkAreaUnderTheCurveDescriptionParameter.h

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mitkAterialInputFunctionGenerator.h

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mitkConcentrationCurveGenerator.h

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mitkConcreteAIFBasedModelFactory.h

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mitkConvertT2ConcentrationFunctor.h

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mitkConvertToConcentrationAbsoluteFunctor.h

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mitkConvertToConcentrationRelativeFunctor.h

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mitkConvertToConcentrationTurboFlashFunctor.h

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mitkConvertToConcentrationViaT1Functor.h

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mitkConvolutionHelper.h

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mitkCurveDescriptionParameterBase.h

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mitkCurveParameterFunctor.h

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mitkDescriptionParameterImageGeneratorBase.h

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mitkDescriptivePharmacokineticBrixModel.h

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mitkDescriptivePharmacokineticBrixModelFactory.h

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mitkDescriptivePharmacokineticBrixModelParameterizer.h

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mitkDescriptivePharmacokineticBrixModelValueBasedParameterizer.h

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mitkExtendedOneTissueCompartmentModel.h

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mitkExtendedOneTissueCompartmentModelFactory.h

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mitkExtendedOneTissueCompartmentModelParameterizer.h

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mitkExtendedToftsModel.h

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mitkExtendedToftsModelFactory.h

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mitkExtendedToftsModelParameterizer.h

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mitkImageGenerationHelper.h

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mitkMaximumCurveDescriptionParameter.h

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mitkMeanResidenceTimeDescriptionParameter.h

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mitkNumericTwoCompartmentExchangeModel.h

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mitkNumericTwoCompartmentExchangeModelFactory.h

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mitkNumericTwoCompartmentExchangeModelParameterizer.h

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mitkNumericTwoTissueCompartmentModel.h

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mitkNumericTwoTissueCompartmentModelFactory.h

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mitkNumericTwoTissueCompartmentModelParameterizer.h

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mitkOneTissueCompartmentModel.h

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mitkOneTissueCompartmentModelFactory.h

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mitkOneTissueCompartmentModelParameterizer.h

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mitkPerfusionDataGenerator.h

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mitkPixelBasedDescriptionParameterImageGenerator.h

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mitkStandardToftsModel.h

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mitkStandardToftsModelFactory.h

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mitkStandardToftsModelParameterizer.h

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mitkThreeStepLinearModel.h

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mitkThreeStepLinearModelFactory.h

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mitkThreeStepLinearModelParameterizer.h

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mitkTimeToPeakCurveDescriptionParameter.h

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mitkTwoCompartmentExchangeModel.h

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mitkTwoCompartmentExchangeModelDifferentialEquations.h

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mitkTwoCompartmentExchangeModelFactory.h

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mitkTwoCompartmentExchangeModelFactoryBase.h

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mitkTwoCompartmentExchangeModelParameterizer.h

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mitkTwoTissueCompartmentFDGModel.h

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mitkTwoTissueCompartmentFDGModelFactory.h

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mitkTwoTissueCompartmentFDGModelParameterizer.h

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mitkTwoTissueCompartmentModel.h

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mitkTwoTissueCompartmentModelDifferentialEquations.h

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mitkTwoTissueCompartmentModelFactory.h

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mitkTwoTissueCompartmentModelFactoryBase.h

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mitkTwoTissueCompartmentModelParameterizer.h

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src

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Common

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mitkAIFParametrizerHelper.cpp

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mitkAterialInputFunctionGenerator.cpp

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mitkConcentrationCurveGenerator.cpp

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mitkDescriptionParameterImageGeneratorBase.cpp

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mitkPixelBasedDescriptionParameterImageGenerator.cpp

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DescriptionParameters

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mitkAreaUnderFirstMomentDescriptionParameter.cpp

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mitkAreaUnderTheCurveDescriptionParameter.cpp

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mitkCurveDescriptionParameterBase.cpp

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mitkMaximumCurveDescriptionParameter.cpp

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mitkMeanResidenceTimeDescriptionParameter.cpp

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mitkTimeToPeakCurveDescriptionParameter.cpp

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Functors

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mitkCurveParameterFunctor.cpp

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Models

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mitkAIFBasedModelBase.cpp

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mitkDescriptivePharmacokineticBrixModel.cpp

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mitkDescriptivePharmacokineticBrixModelFactory.cpp

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mitkDescriptivePharmacokineticBrixModelParameterizer.cpp

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mitkDescriptivePharmacokineticBrixModelValueBasedParameterizer.cpp

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mitkExtendedOneTissueCompartmentModel.cpp

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mitkExtendedOneTissueCompartmentModelFactory.cpp

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mitkExtendedOneTissueCompartmentModelParameterizer.cpp

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mitkExtendedToftsModel.cpp

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mitkExtendedToftsModelFactory.cpp

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mitkExtendedToftsModelParameterizer.cpp

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mitkNumericTwoCompartmentExchangeModel.cpp

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mitkNumericTwoCompartmentExchangeModelFactory.cpp

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mitkNumericTwoCompartmentExchangeModelParameterizer.cpp

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mitkNumericTwoTissueCompartmentModel.cpp

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mitkNumericTwoTissueCompartmentModelFactory.cpp

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mitkNumericTwoTissueCompartmentModelParameterizer.cpp

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mitkOneTissueCompartmentModel.cpp

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mitkOneTissueCompartmentModelFactory.cpp

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mitkOneTissueCompartmentModelParameterizer.cpp

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mitkStandardToftsModel.cpp

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mitkStandardToftsModelFactory.cpp

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mitkStandardToftsModelParameterizer.cpp

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mitkThreeStepLinearModel.cpp

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mitkThreeStepLinearModelFactory.cpp

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mitkThreeStepLinearModelParameterizer.cpp

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mitkTwoCompartmentExchangeModel.cpp

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mitkTwoCompartmentExchangeModelFactory.cpp

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mitkTwoCompartmentExchangeModelParameterizer.cpp

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mitkTwoTissueCompartmentFDGModel.cpp

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mitkTwoTissueCompartmentFDGModelFactory.cpp

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mitkTwoTissueCompartmentFDGModelParameterizer.cpp

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mitkTwoTissueCompartmentModel.cpp

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mitkTwoTissueCompartmentModelFactory.cpp

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mitkTwoTissueCompartmentModelParameterizer.cpp

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SimulationFramework

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mitkImageGenerationHelper.cpp

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mitkPerfusionDataGenerator.cpp

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test

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CMakeLists.txt

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ConvertToConcentrationTest.cpp

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files.cmake

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mitkDescriptivePharmacokineticBrixModelTest.cpp

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PharmacokineticsUI

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CMakeLists.txt

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Qmitk

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QmitkDescriptionParameterBackgroundJob.cpp

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QmitkDescriptionParameterBackgroundJob.h

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files.cmake

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Plugins/

PluginList.cmake

org.mitk.gui.qt.fit.demo

manifest_headers.cmake

FitGeneratorDemoView.cpp

FitGeneratorDemoView.h

FitGeneratorDemoView.ui

org_mitk_FitGeneratorDemo_Activator.cpp

org_mitk_FitGeneratorDemo_Activator.h

org.mitk.gui.qt.fit.genericfitting

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CMakeLists.txt

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documentation

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UserManual

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Manual.dox

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doxygen

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modules.dox

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files.cmake

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Fixed T25004745c12e86a8aActions

Description

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rMITK745c12e86a8a

Modules/ModelFit/CMakeLists.txt

Modules/ModelFit/autoload/IO/CMakeLists.txt

Modules/ModelFit/autoload/IO/files.cmake

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Modules/ModelFit/cmdapps/PixelDumpMiniApp.cpp

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Modules/ModelFit/include/itkMaskedStatisticsImageFilter.h

Modules/ModelFit/include/itkMaskedStatisticsImageFilter.hxx

Modules/ModelFit/include/itkMultiOutputNaryFunctorImageFilter.h

Modules/ModelFit/include/itkMultiOutputNaryFunctorImageFilter.tpp

Modules/ModelFit/include/mitkBinaryImageToLabelSetImageFilter.h

Modules/ModelFit/include/mitkChiSquareFitCostFunction.h

Modules/ModelFit/include/mitkConcreteModelFactoryBase.h

Modules/ModelFit/include/mitkConcreteModelParameterizerBase.h

Modules/ModelFit/include/mitkConstraintCheckerBase.h

Modules/ModelFit/include/mitkConstraintCheckerInterface.h

Modules/ModelFit/include/mitkDummyModelFitFunctor.h

Modules/ModelFit/include/mitkExtractTimeGrid.h

Modules/ModelFit/include/mitkFormulaParser.h

Modules/ModelFit/include/mitkFresnel.h

Modules/ModelFit/include/mitkGaussianNoiseFunctor.h

Modules/ModelFit/include/mitkGenericParamModel.h

Modules/ModelFit/include/mitkGenericParamModelFactory.h

Modules/ModelFit/include/mitkGenericParamModelParameterizer.h

Modules/ModelFit/include/mitkIModelFitProvider.h

Modules/ModelFit/include/mitkIModelProvider.h

Modules/ModelFit/include/mitkImageBasedParameterizationDelegate.h

Modules/ModelFit/include/mitkIndexedValueFunctorBase.h

Modules/ModelFit/include/mitkIndexedValueFunctorPolicy.h

Modules/ModelFit/include/mitkInitialParameterizationDelegateBase.h

Modules/ModelFit/include/mitkLevenbergMarquardtModelFitFunctor.h

Modules/ModelFit/include/mitkLinearModel.h

Modules/ModelFit/include/mitkLinearModelFactory.h

Modules/ModelFit/include/mitkLinearModelParameterizer.h

Modules/ModelFit/include/mitkMVConstrainedCostFunctionDecorator.h

Modules/ModelFit/include/mitkMVModelFitCostFunction.h

Modules/ModelFit/include/mitkMaskedDynamicImageStatisticsGenerator.h

Modules/ModelFit/include/mitkModelBase.h

Modules/ModelFit/include/mitkModelBasedValueFunctorBase.h

Modules/ModelFit/include/mitkModelDataGenerationFunctor.h

Modules/ModelFit/include/mitkModelFactoryBase.h

Modules/ModelFit/include/mitkModelFitCmdAppsHelper.h

Modules/ModelFit/include/mitkModelFitConstants.h

Modules/ModelFit/include/mitkModelFitCostFunctionInterface.h

Modules/ModelFit/include/mitkModelFitException.h

Modules/ModelFit/include/mitkModelFitFunctorBase.h

Modules/ModelFit/include/mitkModelFitFunctorPolicy.h

Modules/ModelFit/include/mitkModelFitInfo.h

Modules/ModelFit/include/mitkModelFitInfoSignalGenerationFunctor.h

Modules/ModelFit/include/mitkModelFitParameter.h

Modules/ModelFit/include/mitkModelFitParameterValueExtraction.h

Modules/ModelFit/include/mitkModelFitProviderBase.h

Modules/ModelFit/include/mitkModelFitProviderBase.tpp

Modules/ModelFit/include/mitkModelFitResultHelper.h

Modules/ModelFit/include/mitkModelFitStaticParameterMap.h

Modules/ModelFit/include/mitkModelFitUIDHelper.h

Modules/ModelFit/include/mitkModelGenerator.h

Modules/ModelFit/include/mitkModelParameterizerBase.h

Modules/ModelFit/include/mitkModelTraitsInterface.h

Modules/ModelFit/include/mitkNormalizedSumOfSquaredDifferencesFitCostFunction.h

Modules/ModelFit/include/mitkParameterFitImageGeneratorBase.h

Modules/ModelFit/include/mitkPixelBasedParameterFitImageGenerator.h

Modules/ModelFit/include/mitkROIBasedParameterFitImageGenerator.h

Modules/ModelFit/include/mitkReducedChiSquareFitCostFunction.h

Modules/ModelFit/include/mitkSVModelFitCostFunction.h

Fixed T25004
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