diff --git a/Examples/Plugins/org.mitk.example.gui.customviewer.views/src/internal/SimpleRenderWindowView.cpp b/Examples/Plugins/org.mitk.example.gui.customviewer.views/src/internal/SimpleRenderWindowView.cpp index 3195aa55ef..837e741fc2 100644 --- a/Examples/Plugins/org.mitk.example.gui.customviewer.views/src/internal/SimpleRenderWindowView.cpp +++ b/Examples/Plugins/org.mitk.example.gui.customviewer.views/src/internal/SimpleRenderWindowView.cpp @@ -1,211 +1,212 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "SimpleRenderWindowView.h" #include #include "org_mitk_example_gui_customviewer_views_Activator.h" #include #include #include +#include #include #include /** * \brief Helper class adapted from QmitkAbstractRenderEditor by defining the correct plugin context. * * This helper class adapted from QmitkAbstractRenderEditor provides the rendering manager interface. */ // //! [SimpleRenderWindowViewHelper] class AbstractRenderWindowViewPrivate { public: AbstractRenderWindowViewPrivate() : m_RenderingManagerInterface(mitk::MakeRenderingManagerInterface(mitk::RenderingManager::GetInstance())) // //! [SimpleRenderWindowViewHelper] { } ~AbstractRenderWindowViewPrivate() { delete m_RenderingManagerInterface; } mitk::IRenderingManager *m_RenderingManagerInterface; }; const std::string SimpleRenderWindowView::VIEW_ID = "org.mitk.customviewer.views.simplerenderwindowview"; SimpleRenderWindowView::SimpleRenderWindowView() : m_RenderWindow(nullptr), d(new AbstractRenderWindowViewPrivate) { } SimpleRenderWindowView::~SimpleRenderWindowView() { } QmitkRenderWindow *SimpleRenderWindowView::GetActiveQmitkRenderWindow() const { return m_RenderWindow; } QHash SimpleRenderWindowView::GetRenderWindows() const { QHash wnds; wnds.insert("axial", m_RenderWindow); return wnds; } QHash SimpleRenderWindowView::GetQmitkRenderWindows() const { QHash wnds; wnds.insert("axial", m_RenderWindow); return wnds; } QmitkRenderWindow *SimpleRenderWindowView::GetRenderWindow(const QString &id) const { if (id == "axial") { return m_RenderWindow; } return nullptr; } QmitkRenderWindow *SimpleRenderWindowView::GetQmitkRenderWindow(const QString &id) const { if (id == "axial") { return m_RenderWindow; } return nullptr; } QmitkRenderWindow *SimpleRenderWindowView::GetQmitkRenderWindow(const mitk::AnatomicalPlane& orientation) const { if (orientation == mitk::AnatomicalPlane::Axial) { return m_RenderWindow; } return 0; } void SimpleRenderWindowView::SetFocus() { m_RenderWindow->setFocus(); } // //! [SimpleRenderWindowViewCreatePartControl] void SimpleRenderWindowView::CreateQtPartControl(QWidget *parent) { QVBoxLayout *layout = new QVBoxLayout(parent); layout->setContentsMargins(0, 0, 0, 0); m_RenderWindow = new QmitkRenderWindow(parent); layout->addWidget(m_RenderWindow); mitk::DataStorage::Pointer ds = this->GetDataStorage(); m_RenderWindow->GetRenderer()->SetDataStorage(ds); this->RequestUpdate(); } // //! [SimpleRenderWindowViewCreatePartControl] mitk::IRenderingManager *SimpleRenderWindowView::GetRenderingManager() const { // we use the global rendering manager here. This should maybe replaced // by a local one, managing only the render windows specific for the view return d->m_RenderingManagerInterface; } void SimpleRenderWindowView::RequestUpdate(mitk::RenderingManager::RequestType requestType) { if (GetRenderingManager()) GetRenderingManager()->RequestUpdateAll(requestType); } void SimpleRenderWindowView::ForceImmediateUpdate(mitk::RenderingManager::RequestType requestType) { if (GetRenderingManager()) GetRenderingManager()->ForceImmediateUpdateAll(requestType); } void SimpleRenderWindowView::InitializeViews(const mitk::TimeGeometry* /*geometry*/, bool /*resetCamera*/) { // not implemented } void SimpleRenderWindowView::SetInteractionReferenceGeometry(const mitk::TimeGeometry* /*referenceGeometry*/) { // not implemented } bool SimpleRenderWindowView::HasCoupledRenderWindows() const { return false; } -mitk::SliceNavigationController *SimpleRenderWindowView::GetTimeNavigationController() const +mitk::TimeNavigationController *SimpleRenderWindowView::GetTimeNavigationController() const { if (GetRenderingManager()) return GetRenderingManager()->GetTimeNavigationController(); return nullptr; } mitk::Point3D SimpleRenderWindowView::GetSelectedPosition(const QString& /*id*/) const { const mitk::PlaneGeometry* pg = m_RenderWindow->GetSliceNavigationController()->GetCurrentPlaneGeometry(); if (pg) { return pg->GetCenter(); } else { return mitk::Point3D(); } } void SimpleRenderWindowView::SetSelectedPosition(const mitk::Point3D&, const QString&) { } mitk::TimePointType SimpleRenderWindowView::GetSelectedTimePoint(const QString& /*id*/) const { auto timeNavigator = this->GetTimeNavigationController(); if (nullptr != timeNavigator) { return timeNavigator->GetSelectedTimePoint(); } return 0; } void SimpleRenderWindowView::EnableDecorations(bool enable, const QStringList& decorations) { if (decorations.isEmpty() || decorations.contains(DECORATION_MENU)) { m_RenderWindow->ActivateMenuWidget(enable); } } bool SimpleRenderWindowView::IsDecorationEnabled(const QString& decoration) const { if (decoration == DECORATION_MENU) { return m_RenderWindow->GetActivateMenuWidgetFlag(); } return false; } QStringList SimpleRenderWindowView::GetDecorations() const { QStringList decorations; decorations << DECORATION_MENU; return decorations; } diff --git a/Examples/Plugins/org.mitk.example.gui.customviewer.views/src/internal/SimpleRenderWindowView.h b/Examples/Plugins/org.mitk.example.gui.customviewer.views/src/internal/SimpleRenderWindowView.h index 7f055389b9..9c76c3e79c 100644 --- a/Examples/Plugins/org.mitk.example.gui.customviewer.views/src/internal/SimpleRenderWindowView.h +++ b/Examples/Plugins/org.mitk.example.gui.customviewer.views/src/internal/SimpleRenderWindowView.h @@ -1,162 +1,162 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef SimpleRenderWindowView_H_ #define SimpleRenderWindowView_H_ #include #include #include class QmitkRenderWindow; class AbstractRenderWindowViewPrivate; /** * \brief A view class suited for the ViewerPerspective within the custom viewer plug-in. * * This view class contributes data node rendering functionality to the ViewerPerspective. * Being a subclass of QmitkAbstractView, this class yields access to the data storage and * thus is interconnected with the mitk::QmitkDataManagerView present in the same perspective. * As a subclass of mitk::IRenderWindowPart, this class provides an instance of QmitkRenderWindow. * A SimpleRenderWindowView instance is part of the ViewerPerspective for data visualization. */ // //! [SimpleRenderWindowViewDeclaration] class SimpleRenderWindowView : public QmitkAbstractView, public mitk::IRenderWindowPart // //! [SimpleRenderWindowViewDeclaration] { Q_OBJECT public: /** * Standard constructor. */ SimpleRenderWindowView(); ~SimpleRenderWindowView() override; /** * String based view identifier. */ static const std::string VIEW_ID; berryObjectMacro(SimpleRenderWindowView); // ------------------- mitk::IRenderWindowPart ---------------------- /** * \see mitk::IRenderWindowPart::GetActiveQmitkRenderWindow() */ QmitkRenderWindow *GetActiveQmitkRenderWindow() const override; QHash GetRenderWindows() const; /** * \see mitk::IRenderWindowPart::GetQmitkRenderWindows() */ QHash GetQmitkRenderWindows() const override; QmitkRenderWindow *GetRenderWindow(const QString &id) const; /** * \see mitk::IRenderWindowPart::GetQmitkRenderWindow(QString) */ QmitkRenderWindow *GetQmitkRenderWindow(const QString &id) const override; /** * \see mitk::IRenderWindowPart::GetQmitkRenderWindow(mitk::AnatomicalPlane) */ QmitkRenderWindow *GetQmitkRenderWindow(const mitk::AnatomicalPlane &orientation) const override; /** * \see mitk::QmitkAbstractRenderEditor::GetRenderingManager() */ mitk::IRenderingManager *GetRenderingManager() const override; /** * \see mitk::QmitkAbstractRenderEditor::RequestUpdate() */ void RequestUpdate( mitk::RenderingManager::RequestType requestType = mitk::RenderingManager::REQUEST_UPDATE_ALL) override; /** * \see mitk::QmitkAbstractRenderEditor::ForceImmediateUpdate() */ void ForceImmediateUpdate(mitk::RenderingManager::RequestType) override; /** * \see mitk::IRenderWindowPart::InitializeViews() */ void InitializeViews(const mitk::TimeGeometry* geometry, bool resetCamera) override; /** * \see mitk::IRenderWindowPart::SetInteractionReferenceGeometry() */ void SetInteractionReferenceGeometry(const mitk::TimeGeometry* referenceGeometry) override; /** * \see mitk::IRenderWindowPart::HasCoupledRenderWindows */ bool HasCoupledRenderWindows() const override; /** * \see mitk::IRenderWindowPart::GetTimeNavigationController() */ - mitk::SliceNavigationController *GetTimeNavigationController() const override; + mitk::TimeNavigationController* GetTimeNavigationController() const override; /** * \see mitk::IRenderWindowPart::GetSelectionPosition() */ mitk::Point3D GetSelectedPosition(const QString& id = QString()) const override; /** * \see mitk::IRenderWindowPart::SetSelectedPosition() */ void SetSelectedPosition(const mitk::Point3D& pos, const QString& id = QString()) override; /** * \see mitk::IRenderWindowPart::GetSelectedTimePoint() */ mitk::TimePointType GetSelectedTimePoint(const QString& id = QString()) const override; /** * \see mitk::IRenderWindowPart::EnableDecorations() */ void EnableDecorations(bool enable, const QStringList& decorations = QStringList()) override; /** * \see mitk::IRenderWindowPart::IsDecorationEnabled() */ bool IsDecorationEnabled(const QString& decoration) const override; /** * \see mitk::IRenderWindowPart::GetDecorations() */ QStringList GetDecorations() const override; protected: void SetFocus() override; /** * Creates the QmitkRenderWindow whose renderer is being connected to the view's data storage. */ void CreateQtPartControl(QWidget *parent) override; private: /** * The view's render window. */ QmitkRenderWindow *m_RenderWindow; QScopedPointer d; }; #endif /*SimpleRenderWindowView_H_*/ diff --git a/Examples/Plugins/org.mitk.example.gui.imaging/src/internal/simpleexample/QmitkSimpleExampleView.cpp b/Examples/Plugins/org.mitk.example.gui.imaging/src/internal/simpleexample/QmitkSimpleExampleView.cpp index dca9656896..46a131945b 100644 --- a/Examples/Plugins/org.mitk.example.gui.imaging/src/internal/simpleexample/QmitkSimpleExampleView.cpp +++ b/Examples/Plugins/org.mitk.example.gui.imaging/src/internal/simpleexample/QmitkSimpleExampleView.cpp @@ -1,276 +1,275 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkSimpleExampleView.h" #include #include #include #include #include -#include "QmitkRenderWindow.h" -#include "QmitkStepperAdapter.h" +#include +#include #include "mitkNodePredicateNot.h" #include "mitkNodePredicateProperty.h" #include "mitkProperties.h" #include #include #include const std::string QmitkSimpleExampleView::VIEW_ID = "org.mitk.views.simpleexample"; QmitkSimpleExampleView::QmitkSimpleExampleView() : m_Controls(nullptr), m_NavigatorsInitialized(false), m_Parent(nullptr) { } QmitkSimpleExampleView::~QmitkSimpleExampleView() { } void QmitkSimpleExampleView::CreateQtPartControl(QWidget *parent) { if (!m_Controls) { m_Parent = parent; // create GUI widgets m_Controls = new Ui::QmitkSimpleExampleViewControls; m_Controls->setupUi(parent); this->CreateConnections(); this->RenderWindowPartActivated(this->GetRenderWindowPart(mitk::WorkbenchUtil::OPEN)); } } void QmitkSimpleExampleView::SetFocus() { m_Controls->renderWindowComboBox->setFocus(); } void QmitkSimpleExampleView::RenderWindowPartActivated(mitk::IRenderWindowPart *renderWindowPart) { if (renderWindowPart == nullptr) { m_Parent->setEnabled(false); return; } QHashIterator renderIter(renderWindowPart->GetQmitkRenderWindows()); while (renderIter.hasNext()) { renderIter.next(); m_Controls->renderWindowComboBox->addItem(renderIter.key()); } RenderWindowSelected(m_Controls->renderWindowComboBox->currentText()); - m_TimeStepper.reset(new QmitkStepperAdapter(m_Controls->timeSliceNavigationWidget, - renderWindowPart->GetTimeNavigationController()->GetTime())); - m_MovieStepper.reset(new QmitkStepperAdapter(m_Controls->movieNavigatorTime, - renderWindowPart->GetTimeNavigationController()->GetTime())); + auto* timeController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + m_TimeStepper.reset(new QmitkStepperAdapter(m_Controls->timeSliceNavigationWidget, timeController->GetStepper())); + m_MovieStepper.reset(new QmitkStepperAdapter(m_Controls->movieNavigatorTime, timeController->GetStepper())); m_Parent->setEnabled(true); } void QmitkSimpleExampleView::RenderWindowPartDeactivated(mitk::IRenderWindowPart * /*renderWindowPart*/) { m_Parent->setEnabled(false); m_SliceStepper.reset(); m_TimeStepper.reset(); m_MovieStepper.reset(); m_Controls->renderWindowComboBox->clear(); } void QmitkSimpleExampleView::CreateConnections() { if (m_Controls) { connect(m_Controls->renderWindowComboBox, SIGNAL(currentIndexChanged(QString)), this, SLOT(RenderWindowSelected(QString))); connect(m_Controls->stereoSelect, SIGNAL(activated(int)), this, SLOT(StereoSelectionChanged(int))); connect(m_Controls->reInitializeNavigatorsButton, SIGNAL(clicked()), this, SLOT(InitNavigators())); connect(m_Controls->m_TakeScreenshotBtn, SIGNAL(clicked()), this, SLOT(OnTakeScreenshot())); connect(m_Controls->m_TakeHighResScreenShotBtn, SIGNAL(clicked()), this, SLOT(OnTakeHighResolutionScreenshot())); } } void QmitkSimpleExampleView::InitNavigators() { /* get all nodes that have not set "includeInBoundingBox" to false */ mitk::NodePredicateNot::Pointer pred = mitk::NodePredicateNot::New( mitk::NodePredicateProperty::New("includeInBoundingBox", mitk::BoolProperty::New(false))); mitk::DataStorage::SetOfObjects::ConstPointer rs = this->GetDataStorage()->GetSubset(pred); /* calculate bounding geometry of these nodes */ auto bounds = this->GetDataStorage()->ComputeBoundingGeometry3D(rs); /* initialize the views to the bounding geometry */ m_NavigatorsInitialized = mitk::RenderingManager::GetInstance()->InitializeViews(bounds); } void QmitkSimpleExampleView::StereoSelectionChanged(int id) { /* From vtkRenderWindow.h tells us about stereo rendering: Set/Get what type of stereo rendering to use. CrystalEyes mode uses frame-sequential capabilities available in OpenGL to drive LCD shutter glasses and stereo projectors. RedBlue mode is a simple type of stereo for use with red-blue glasses. Anaglyph mode is a superset of RedBlue mode, but the color output channels can be configured using the AnaglyphColorMask and the color of the original image can be (somewhat maintained using AnaglyphColorSaturation; the default colors for Anaglyph mode is red-cyan. Interlaced stereo mode produces a composite image where horizontal lines alternate between left and right views. StereoLeft and StereoRight modes choose one or the other stereo view. Dresden mode is yet another stereoscopic interleaving. */ auto *renderWindowPart = this->GetRenderWindowPart(mitk::WorkbenchUtil::OPEN); vtkRenderWindow *vtkrenderwindow = renderWindowPart->GetQmitkRenderWindow("3d")->GetVtkRenderWindow(); // note: foreground vtkRenderers (at least the department logo renderer) produce errors in stereoscopic visualization. // Therefore, we disable the logo visualization during stereo rendering. switch (id) { case 0: vtkrenderwindow->StereoRenderOff(); break; case 1: vtkrenderwindow->SetStereoTypeToRedBlue(); vtkrenderwindow->StereoRenderOn(); renderWindowPart->EnableDecorations(false, QStringList(mitk::IRenderWindowPart::DECORATION_LOGO)); break; case 2: vtkrenderwindow->SetStereoTypeToDresden(); vtkrenderwindow->StereoRenderOn(); renderWindowPart->EnableDecorations(false, QStringList(mitk::IRenderWindowPart::DECORATION_LOGO)); break; } mitk::BaseRenderer::GetInstance(vtkrenderwindow)->SetMapperID(mitk::BaseRenderer::Standard3D); renderWindowPart->RequestUpdate(); } QmitkRenderWindow *QmitkSimpleExampleView::GetSelectedRenderWindow() const { QString id = m_Controls->renderWindowComboBox->currentText(); if (id.isEmpty()) { return nullptr; } else { return this->GetRenderWindowPart(mitk::WorkbenchUtil::OPEN)->GetQmitkRenderWindow(id); } } void QmitkSimpleExampleView::OnTakeHighResolutionScreenshot() { QString filter; QString fileName = QFileDialog::getSaveFileName( nullptr, "Save screenshot to...", QDir::currentPath(), m_PNGExtension + ";;" + m_JPGExtension, &filter); vtkRenderer *renderer = this->GetSelectedRenderWindow()->GetRenderer()->GetVtkRenderer(); if (renderer == nullptr) return; this->TakeScreenshot(renderer, 4, fileName, filter); } void QmitkSimpleExampleView::OnTakeScreenshot() { QString filter; QString fileName = QFileDialog::getSaveFileName( nullptr, "Save screenshot to...", QDir::currentPath(), m_PNGExtension + ";;" + m_JPGExtension, &filter); QmitkRenderWindow *renWin = this->GetSelectedRenderWindow(); if (renWin == nullptr) return; vtkRenderer *renderer = renWin->GetRenderer()->GetVtkRenderer(); if (renderer == nullptr) return; this->TakeScreenshot(renderer, 1, fileName, filter); } void QmitkSimpleExampleView::TakeScreenshot(vtkRenderer *renderer, unsigned int magnificationFactor, QString fileName, QString filter) { if ((renderer == nullptr) || (magnificationFactor < 1) || fileName.isEmpty()) return; bool doubleBuffering(renderer->GetRenderWindow()->GetDoubleBuffer()); renderer->GetRenderWindow()->DoubleBufferOff(); vtkImageWriter *fileWriter = nullptr; QFileInfo fi(fileName); QString suffix = fi.suffix().toLower(); if (suffix.isEmpty() || (suffix != "png" && suffix != "jpg" && suffix != "jpeg")) { if (filter == m_PNGExtension) { suffix = "png"; } else if (filter == m_JPGExtension) { suffix = "jpg"; } fileName += "." + suffix; } if (suffix.compare("jpg", Qt::CaseInsensitive) == 0 || suffix.compare("jpeg", Qt::CaseInsensitive) == 0) { vtkJPEGWriter *w = vtkJPEGWriter::New(); w->SetQuality(100); w->ProgressiveOff(); fileWriter = w; } else // default is png { fileWriter = vtkPNGWriter::New(); } vtkRenderLargeImage *magnifier = vtkRenderLargeImage::New(); magnifier->SetInput(renderer); magnifier->SetMagnification(magnificationFactor); fileWriter->SetInputConnection(magnifier->GetOutputPort()); fileWriter->SetFileName(fileName.toLatin1()); // vtkRenderLargeImage has problems with different layers, therefore we have to // temporarily deactivate all other layers. // we set the background to white, because it is nicer than black... double oldBackground[3]; renderer->GetBackground(oldBackground); double white[] = {1.0, 1.0, 1.0}; renderer->SetBackground(white); mitk::IRenderWindowPart* renderWindowPart = this->GetRenderWindowPart(mitk::WorkbenchUtil::OPEN); renderWindowPart->EnableDecorations(false); fileWriter->Write(); fileWriter->Delete(); renderWindowPart->EnableDecorations(true); renderer->SetBackground(oldBackground); renderer->GetRenderWindow()->SetDoubleBuffer(doubleBuffering); } void QmitkSimpleExampleView::RenderWindowSelected(const QString &id) { if (!id.isEmpty()) { m_SliceStepper.reset(new QmitkStepperAdapter(m_Controls->sliceNavigationWidget, - this->GetRenderWindowPart(mitk::WorkbenchUtil::OPEN)->GetQmitkRenderWindow(id)->GetSliceNavigationController()->GetSlice())); + this->GetRenderWindowPart(mitk::WorkbenchUtil::OPEN)->GetQmitkRenderWindow(id)->GetSliceNavigationController()->GetStepper())); } } diff --git a/Examples/QtFreeRender/QtFreeRender.cpp b/Examples/QtFreeRender/QtFreeRender.cpp index 9c679bbb8b..fbd2d94e1a 100644 --- a/Examples/QtFreeRender/QtFreeRender.cpp +++ b/Examples/QtFreeRender/QtFreeRender.cpp @@ -1,319 +1,302 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkRenderWindow.h" #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include //##Documentation //## @brief Example of a NON QT DEPENDENT MITK RENDERING APPLICATION. mitk::RenderWindow::Pointer mitkWidget1; mitk::RenderWindow::Pointer mitkWidget2; mitk::RenderWindow::Pointer mitkWidget3; mitk::RenderWindow::Pointer mitkWidget4; mitk::DisplayActionEventBroadcast::Pointer m_DisplayActionEventBroadcast; vtkSmartPointer m_RectangleRendering1; vtkSmartPointer m_RectangleRendering2; vtkSmartPointer m_RectangleRendering3; vtkSmartPointer m_RectangleRendering4; -mitk::SliceNavigationController *m_TimeNavigationController = nullptr; - mitk::DataStorage::Pointer m_DataStorage; mitk::DataNode::Pointer m_PlaneNode1; mitk::DataNode::Pointer m_PlaneNode2; mitk::DataNode::Pointer m_PlaneNode3; mitk::DataNode::Pointer m_Node; void InitializeWindows() { // Set default view directions for SNCs mitkWidget1->GetSliceNavigationController()->SetDefaultViewDirection(mitk::AnatomicalPlane::Axial); mitkWidget2->GetSliceNavigationController()->SetDefaultViewDirection(mitk::AnatomicalPlane::Sagittal); mitkWidget3->GetSliceNavigationController()->SetDefaultViewDirection(mitk::AnatomicalPlane::Coronal); mitkWidget4->GetSliceNavigationController()->SetDefaultViewDirection(mitk::AnatomicalPlane::Original); - // initialize m_TimeNavigationController: send time via sliceNavigationControllers - m_TimeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); - m_TimeNavigationController->ConnectGeometryTimeEvent(mitkWidget1->GetSliceNavigationController()); - m_TimeNavigationController->ConnectGeometryTimeEvent(mitkWidget2->GetSliceNavigationController()); - m_TimeNavigationController->ConnectGeometryTimeEvent(mitkWidget3->GetSliceNavigationController()); - m_TimeNavigationController->ConnectGeometryTimeEvent(mitkWidget4->GetSliceNavigationController()); - mitkWidget1->GetSliceNavigationController()->ConnectGeometrySendEvent( - mitk::BaseRenderer::GetInstance(mitkWidget4->GetVtkRenderWindow())); - - // reverse connection between sliceNavigationControllers and m_TimeNavigationController - mitkWidget1->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); - mitkWidget2->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); - mitkWidget3->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); - mitkWidget4->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); - mitkWidget4->GetRenderer()->GetVtkRenderer()->SetBackground(0.1, 0.1, 0.1); mitkWidget4->GetRenderer()->GetVtkRenderer()->SetBackground(0.5, 0.5, 0.5); mitkWidget4->GetRenderer()->GetVtkRenderer()->GradientBackgroundOn(); m_RectangleRendering1 = vtkSmartPointer::New(); m_RectangleRendering1->SetColor(1.0, 0.0, 0.0); mitkWidget1->GetRenderer()->GetVtkRenderer()->AddViewProp(m_RectangleRendering1); m_RectangleRendering2 = vtkSmartPointer::New(); m_RectangleRendering2->SetColor(0.0, 1.0, 0.0); mitkWidget2->GetRenderer()->GetVtkRenderer()->AddViewProp(m_RectangleRendering2); m_RectangleRendering3 = vtkSmartPointer::New(); m_RectangleRendering3->SetColor(0.0, 0.0, 1.0); mitkWidget3->GetRenderer()->GetVtkRenderer()->AddViewProp(m_RectangleRendering3); m_RectangleRendering4 = vtkSmartPointer::New(); m_RectangleRendering4->SetColor(1.0, 1.0, 0.0); mitkWidget4->GetRenderer()->GetVtkRenderer()->AddViewProp(m_RectangleRendering4); } void AddDisplayPlaneSubTree() { // add the displayed planes of the multiwidget to a node to which the subtree // @a planesSubTree points ... float white[3] = {1.0f, 1.0f, 1.0f}; mitk::PlaneGeometryDataMapper2D::Pointer mapper; mitk::IntProperty::Pointer layer = mitk::IntProperty::New(1000); // ... of widget 1 m_PlaneNode1 = (mitk::BaseRenderer::GetInstance(mitkWidget1->GetVtkRenderWindow()))->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode1->SetColor(white, mitk::BaseRenderer::GetInstance(mitkWidget4->GetVtkRenderWindow())); m_PlaneNode1->SetProperty("visible", mitk::BoolProperty::New(true)); m_PlaneNode1->SetProperty("name", mitk::StringProperty::New("widget1Plane")); m_PlaneNode1->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_PlaneNode1->SetProperty("helper object", mitk::BoolProperty::New(true)); m_PlaneNode1->SetProperty("layer", layer); m_PlaneNode1->SetColor(1.0, 0.0, 0.0); mapper = mitk::PlaneGeometryDataMapper2D::New(); m_PlaneNode1->SetMapper(mitk::BaseRenderer::Standard2D, mapper); // ... of widget 2 m_PlaneNode2 = (mitk::BaseRenderer::GetInstance(mitkWidget2->GetVtkRenderWindow()))->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode2->SetColor(white, mitk::BaseRenderer::GetInstance(mitkWidget4->GetVtkRenderWindow())); m_PlaneNode2->SetProperty("visible", mitk::BoolProperty::New(true)); m_PlaneNode2->SetProperty("name", mitk::StringProperty::New("widget2Plane")); m_PlaneNode2->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_PlaneNode2->SetProperty("helper object", mitk::BoolProperty::New(true)); m_PlaneNode2->SetProperty("layer", layer); m_PlaneNode2->SetColor(0.0, 1.0, 0.0); mapper = mitk::PlaneGeometryDataMapper2D::New(); m_PlaneNode2->SetMapper(mitk::BaseRenderer::Standard2D, mapper); // ... of widget 3 m_PlaneNode3 = (mitk::BaseRenderer::GetInstance(mitkWidget3->GetVtkRenderWindow()))->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode3->SetColor(white, mitk::BaseRenderer::GetInstance(mitkWidget4->GetVtkRenderWindow())); m_PlaneNode3->SetProperty("visible", mitk::BoolProperty::New(true)); m_PlaneNode3->SetProperty("name", mitk::StringProperty::New("widget3Plane")); m_PlaneNode3->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_PlaneNode3->SetProperty("helper object", mitk::BoolProperty::New(true)); m_PlaneNode3->SetProperty("layer", layer); m_PlaneNode3->SetColor(0.0, 0.0, 1.0); mapper = mitk::PlaneGeometryDataMapper2D::New(); m_PlaneNode3->SetMapper(mitk::BaseRenderer::Standard2D, mapper); // AddPlanesToDataStorage if (m_PlaneNode1.IsNotNull() && m_PlaneNode2.IsNotNull() && m_PlaneNode3.IsNotNull() && m_Node.IsNotNull()) { if (m_DataStorage.IsNotNull()) { m_DataStorage->Add(m_PlaneNode1); m_DataStorage->Add(m_PlaneNode2); m_DataStorage->Add(m_PlaneNode3); } } } void Fit() { vtkRenderer *vtkrenderer; mitk::BaseRenderer::GetInstance(mitkWidget1->GetVtkRenderWindow())->GetCameraController()->Fit(); mitk::BaseRenderer::GetInstance(mitkWidget2->GetVtkRenderWindow())->GetCameraController()->Fit(); mitk::BaseRenderer::GetInstance(mitkWidget3->GetVtkRenderWindow())->GetCameraController()->Fit(); mitk::BaseRenderer::GetInstance(mitkWidget4->GetVtkRenderWindow())->GetCameraController()->Fit(); int w = vtkObject::GetGlobalWarningDisplay(); vtkObject::GlobalWarningDisplayOff(); vtkrenderer = mitk::BaseRenderer::GetInstance(mitkWidget1->GetVtkRenderWindow())->GetVtkRenderer(); if (vtkrenderer != nullptr) vtkrenderer->ResetCamera(); vtkrenderer = mitk::BaseRenderer::GetInstance(mitkWidget2->GetVtkRenderWindow())->GetVtkRenderer(); if (vtkrenderer != nullptr) vtkrenderer->ResetCamera(); vtkrenderer = mitk::BaseRenderer::GetInstance(mitkWidget3->GetVtkRenderWindow())->GetVtkRenderer(); if (vtkrenderer != nullptr) vtkrenderer->ResetCamera(); vtkrenderer = mitk::BaseRenderer::GetInstance(mitkWidget4->GetVtkRenderWindow())->GetVtkRenderer(); if (vtkrenderer != nullptr) vtkrenderer->ResetCamera(); vtkObject::SetGlobalWarningDisplay(w); } int main(int argc, char *argv[]) { if (argc < 2) { fprintf(stderr, "Usage: %s [filename1] [filename2] ...\n\n", ""); return 1; } // Create a DataStorage m_DataStorage = mitk::StandaloneDataStorage::New(); //************************************************************************* // Part II: Create some data by reading files //************************************************************************* int i; for (i = 1; i < argc; ++i) { // For testing if (strcmp(argv[i], "-testing") == 0) continue; std::string filename = argv[i]; try { // Read the file and add it as a data node to the data storage mitk::DataStorage::SetOfObjects::Pointer nodes = mitk::IOUtil::Load(filename, *m_DataStorage); for (mitk::DataStorage::SetOfObjects::Iterator nodeIter = nodes->Begin(), nodeIterEnd = nodes->End(); nodeIter != nodeIterEnd; ++nodeIter) { mitk::DataNode::Pointer node = nodeIter->Value(); mitk::Image::Pointer image = dynamic_cast(node->GetData()); if (image.IsNotNull()) { // Set the property "volumerendering" to the Boolean value "true" node->SetProperty("volumerendering", mitk::BoolProperty::New(false)); node->SetProperty("name", mitk::StringProperty::New("testimage")); node->SetProperty("layer", mitk::IntProperty::New(1)); } } } catch (...) { std::cerr << "Could not open file " << filename << std::endl; exit(2); } } //************************************************************************* // Part V: Create window and pass the tree to it //************************************************************************* // Create renderwindows mitkWidget1 = mitk::RenderWindow::New(); mitkWidget2 = mitk::RenderWindow::New(); mitkWidget3 = mitk::RenderWindow::New(); mitkWidget4 = mitk::RenderWindow::New(); mitkWidget1->GetRenderer()->PrepareRender(); mitkWidget2->GetRenderer()->PrepareRender(); mitkWidget3->GetRenderer()->PrepareRender(); // Tell the renderwindow which (part of) the datastorage to render mitkWidget1->GetRenderer()->SetDataStorage(m_DataStorage); mitkWidget2->GetRenderer()->SetDataStorage(m_DataStorage); mitkWidget3->GetRenderer()->SetDataStorage(m_DataStorage); mitkWidget4->GetRenderer()->SetDataStorage(m_DataStorage); // instantiate display interactor if (m_DisplayActionEventBroadcast.IsNull()) { m_DisplayActionEventBroadcast = mitk::DisplayActionEventBroadcast::New(); m_DisplayActionEventBroadcast->LoadStateMachine("DisplayInteraction.xml"); m_DisplayActionEventBroadcast->SetEventConfig("DisplayConfigMITK.xml"); } // Use it as a 2D View mitkWidget1->GetRenderer()->SetMapperID(mitk::BaseRenderer::Standard2D); mitkWidget2->GetRenderer()->SetMapperID(mitk::BaseRenderer::Standard2D); mitkWidget3->GetRenderer()->SetMapperID(mitk::BaseRenderer::Standard2D); mitkWidget4->GetRenderer()->SetMapperID(mitk::BaseRenderer::Standard3D); mitkWidget1->SetSize(400, 400); mitkWidget2->GetVtkRenderWindow()->SetPosition(mitkWidget1->GetVtkRenderWindow()->GetPosition()[0] + 420, mitkWidget1->GetVtkRenderWindow()->GetPosition()[1]); mitkWidget2->SetSize(400, 400); mitkWidget3->GetVtkRenderWindow()->SetPosition(mitkWidget1->GetVtkRenderWindow()->GetPosition()[0], mitkWidget1->GetVtkRenderWindow()->GetPosition()[1] + 450); mitkWidget3->SetSize(400, 400); mitkWidget4->GetVtkRenderWindow()->SetPosition(mitkWidget1->GetVtkRenderWindow()->GetPosition()[0] + 420, mitkWidget1->GetVtkRenderWindow()->GetPosition()[1] + 450); mitkWidget4->SetSize(400, 400); InitializeWindows(); AddDisplayPlaneSubTree(); Fit(); // Initialize the RenderWindows auto geo = m_DataStorage->ComputeBoundingGeometry3D(m_DataStorage->GetAll()); mitk::RenderingManager::GetInstance()->InitializeViews(geo); m_DataStorage->Print(std::cout); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); // reinit the mitkVTKEventProvider; // this is only necessary once after calling // ForceImmediateUpdateAll() for the first time mitkWidget1->ReinitEventProvider(); mitkWidget2->ReinitEventProvider(); mitkWidget3->ReinitEventProvider(); mitkWidget1->GetVtkRenderWindow()->Render(); mitkWidget2->GetVtkRenderWindow()->Render(); mitkWidget3->GetVtkRenderWindow()->Render(); mitkWidget4->GetVtkRenderWindow()->Render(); mitkWidget4->GetVtkRenderWindowInteractor()->Start(); return 0; } diff --git a/Examples/Tutorial/Step1/Step1.cpp b/Examples/Tutorial/Step1/Step1.cpp index c203119b7f..3ac735e7a8 100644 --- a/Examples/Tutorial/Step1/Step1.cpp +++ b/Examples/Tutorial/Step1/Step1.cpp @@ -1,85 +1,85 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkRegisterClasses.h" #include "QmitkRenderWindow.h" #include #include #include #include //##Documentation //## @brief Load image (nrrd format) and display it in a 2D view int main(int argc, char *argv[]) { QApplication qtapplication(argc, argv); if (argc < 2) { fprintf(stderr, "Usage: %s [filename] \n\n", itksys::SystemTools::GetFilenameName(argv[0]).c_str()); return 1; } // Register Qmitk-dependent global instances QmitkRegisterClasses(); //************************************************************************* // Part I: Basic initialization //************************************************************************* // Create a DataStorage // The DataStorage manages all data objects. It is used by the // rendering mechanism to render all data objects // We use the standard implementation mitk::StandaloneDataStorage. mitk::StandaloneDataStorage::Pointer ds = mitk::StandaloneDataStorage::New(); //************************************************************************* // Part II: Create some data by reading a file //************************************************************************* // Load datanode (eg. many image formats, surface formats, etc.) mitk::IOUtil::Load(argv[1], *ds); //************************************************************************* // Part IV: Create window and pass the datastorage to it //************************************************************************* // Create a RenderWindow QmitkRenderWindow renderWindow; // Tell the RenderWindow which (part of) the datastorage to render renderWindow.GetRenderer()->SetDataStorage(ds); // Initialize the RenderWindow auto geo = ds->ComputeBoundingGeometry3D(ds->GetAll()); mitk::RenderingManager::GetInstance()->InitializeViews(geo); // mitk::RenderingManager::GetInstance()->InitializeViews(); // Select a slice mitk::SliceNavigationController::Pointer sliceNaviController = renderWindow.GetSliceNavigationController(); if (sliceNaviController) - sliceNaviController->GetSlice()->SetPos(0); + sliceNaviController->GetStepper()->SetPos(0); //************************************************************************* // Part V: Qt-specific initialization //************************************************************************* renderWindow.show(); renderWindow.resize(256, 256); return qtapplication.exec(); } /** \example Step1.cpp */ diff --git a/Examples/Tutorial/Step2/Step2.cpp b/Examples/Tutorial/Step2/Step2.cpp index 690cecd5b4..b836cf9447 100644 --- a/Examples/Tutorial/Step2/Step2.cpp +++ b/Examples/Tutorial/Step2/Step2.cpp @@ -1,93 +1,93 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkRegisterClasses.h" #include "QmitkRenderWindow.h" #include #include #include #include //##Documentation //## @brief Load one or more data sets (many image, surface //## and other formats) and display it in a 2D view int main(int argc, char *argv[]) { QApplication qtapplication(argc, argv); if (argc < 2) { fprintf( stderr, "Usage: %s [filename1] [filename2] ...\n\n", itksys::SystemTools::GetFilenameName(argv[0]).c_str()); return 1; } // Register Qmitk-dependent global instances QmitkRegisterClasses(); //************************************************************************* // Part I: Basic initialization //************************************************************************* // Create a data storage object. We will use it as a singleton mitk::StandaloneDataStorage::Pointer storage = mitk::StandaloneDataStorage::New(); //************************************************************************* // Part II: Create some data by reading files //************************************************************************* int i; for (i = 1; i < argc; ++i) { // For testing if (strcmp(argv[i], "-testing") == 0) continue; //********************************************************************* // Part III: Put the data into the datastorage //********************************************************************* // Add the node to the DataStorage mitk::IOUtil::Load(argv[i], *storage); } //************************************************************************* // Part IV: Create window and pass the datastorage to it //************************************************************************* // Create a RenderWindow QmitkRenderWindow renderWindow; // Tell the RenderWindow which (part of) the datastorage to render renderWindow.GetRenderer()->SetDataStorage(storage); // Initialize the RenderWindow auto geo = storage->ComputeBoundingGeometry3D(storage->GetAll()); mitk::RenderingManager::GetInstance()->InitializeViews(geo); // Select a slice mitk::SliceNavigationController::Pointer sliceNaviController = renderWindow.GetSliceNavigationController(); if (sliceNaviController) - sliceNaviController->GetSlice()->SetPos(2); + sliceNaviController->GetStepper()->SetPos(2); //************************************************************************* // Part V: Qt-specific initialization //************************************************************************* renderWindow.show(); renderWindow.resize(256, 256); return qtapplication.exec(); } /** \example Step2.cpp */ diff --git a/Modules/Classification/CLMiniApps/CLGlobalImageFeatures.cpp b/Modules/Classification/CLMiniApps/CLGlobalImageFeatures.cpp index 80ba5e8016..4ff557a00d 100644 --- a/Modules/Classification/CLMiniApps/CLGlobalImageFeatures.cpp +++ b/Modules/Classification/CLMiniApps/CLGlobalImageFeatures.cpp @@ -1,786 +1,786 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkCLPolyToNrrd_cpp #define mitkCLPolyToNrrd_cpp #include "time.h" #include #include #include #include "mitkCommandLineParser.h" #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include "itkNearestNeighborInterpolateImageFunction.h" #include "itkResampleImageFilter.h" #include #include #include "QmitkRegisterClasses.h" #include "QmitkRenderWindow.h" #include "vtkRenderLargeImage.h" #include "vtkPNGWriter.h" typedef itk::Image< double, 3 > FloatImageType; typedef itk::Image< unsigned short, 3 > MaskImageType; template class punct_facet : public std::numpunct { public: punct_facet(charT sep) : m_Sep(sep) { } protected: charT do_decimal_point() const override { return m_Sep; } private: charT m_Sep; }; template void ResampleImage(itk::Image* itkImage, float resolution, mitk::Image::Pointer& newImage) { typedef itk::Image ImageType; typedef itk::ResampleImageFilter ResampleFilterType; typename ResampleFilterType::Pointer resampler = ResampleFilterType::New(); auto spacing = itkImage->GetSpacing(); auto size = itkImage->GetLargestPossibleRegion().GetSize(); for (unsigned int i = 0; i < VImageDimension; ++i) { size[i] = size[i] / (1.0*resolution)*(1.0*spacing[i])+1.0; } spacing.Fill(resolution); resampler->SetInput(itkImage); resampler->SetSize(size); resampler->SetOutputSpacing(spacing); resampler->SetOutputOrigin(itkImage->GetOrigin()); resampler->SetOutputDirection(itkImage->GetDirection()); resampler->Update(); newImage->InitializeByItk(resampler->GetOutput()); mitk::GrabItkImageMemory(resampler->GetOutput(), newImage); } template static void CreateNoNaNMask(itk::Image* itkValue, mitk::Image::Pointer mask, mitk::Image::Pointer& newMask) { typedef itk::Image< TPixel, VImageDimension> LFloatImageType; typedef itk::Image< unsigned short, VImageDimension> LMaskImageType; typename LMaskImageType::Pointer itkMask = LMaskImageType::New(); mitk::CastToItkImage(mask, itkMask); typedef itk::ImageDuplicator< LMaskImageType > DuplicatorType; typename DuplicatorType::Pointer duplicator = DuplicatorType::New(); duplicator->SetInputImage(itkMask); duplicator->Update(); auto tmpMask = duplicator->GetOutput(); itk::ImageRegionIterator mask1Iter(itkMask, itkMask->GetLargestPossibleRegion()); itk::ImageRegionIterator mask2Iter(tmpMask, tmpMask->GetLargestPossibleRegion()); itk::ImageRegionIterator imageIter(itkValue, itkValue->GetLargestPossibleRegion()); while (!mask1Iter.IsAtEnd()) { mask2Iter.Set(0); if (mask1Iter.Value() > 0) { // Is not NaN if (imageIter.Value() == imageIter.Value()) { mask2Iter.Set(1); } } ++mask1Iter; ++mask2Iter; ++imageIter; } newMask->InitializeByItk(tmpMask); mitk::GrabItkImageMemory(tmpMask, newMask); } template static void ResampleMask(itk::Image* itkMoving, mitk::Image::Pointer ref, mitk::Image::Pointer& newMask) { typedef itk::Image< TPixel, VImageDimension> LMaskImageType; typedef itk::NearestNeighborInterpolateImageFunction< LMaskImageType> NearestNeighborInterpolateImageFunctionType; typedef itk::ResampleImageFilter ResampleFilterType; typename NearestNeighborInterpolateImageFunctionType::Pointer nn_interpolator = NearestNeighborInterpolateImageFunctionType::New(); typename LMaskImageType::Pointer itkRef = LMaskImageType::New(); mitk::CastToItkImage(ref, itkRef); typename ResampleFilterType::Pointer resampler = ResampleFilterType::New(); resampler->SetInput(itkMoving); resampler->SetReferenceImage(itkRef); resampler->UseReferenceImageOn(); resampler->SetInterpolator(nn_interpolator); resampler->Update(); newMask->InitializeByItk(resampler->GetOutput()); mitk::GrabItkImageMemory(resampler->GetOutput(), newMask); } static void ExtractSlicesFromImages(mitk::Image::Pointer image, mitk::Image::Pointer mask, mitk::Image::Pointer maskNoNaN, mitk::Image::Pointer morphMask, int direction, std::vector &imageVector, std::vector &maskVector, std::vector &maskNoNaNVector, std::vector &morphMaskVector) { typedef itk::Image< double, 2 > FloatImage2DType; typedef itk::Image< unsigned short, 2 > MaskImage2DType; FloatImageType::Pointer itkFloat = FloatImageType::New(); MaskImageType::Pointer itkMask = MaskImageType::New(); MaskImageType::Pointer itkMaskNoNaN = MaskImageType::New(); MaskImageType::Pointer itkMorphMask = MaskImageType::New(); mitk::CastToItkImage(mask, itkMask); mitk::CastToItkImage(maskNoNaN, itkMaskNoNaN); mitk::CastToItkImage(image, itkFloat); mitk::CastToItkImage(morphMask, itkMorphMask); int idxA, idxB, idxC; switch (direction) { case 0: idxA = 1; idxB = 2; idxC = 0; break; case 1: idxA = 0; idxB = 2; idxC = 1; break; case 2: idxA = 0; idxB = 1; idxC = 2; break; default: idxA = 1; idxB = 2; idxC = 0; break; } auto imageSize = image->GetLargestPossibleRegion().GetSize(); FloatImageType::IndexType index3D; FloatImage2DType::IndexType index2D; FloatImage2DType::SpacingType spacing2D; spacing2D[0] = itkFloat->GetSpacing()[idxA]; spacing2D[1] = itkFloat->GetSpacing()[idxB]; for (unsigned int i = 0; i < imageSize[idxC]; ++i) { FloatImage2DType::RegionType region; FloatImage2DType::IndexType start; FloatImage2DType::SizeType size; start[0] = 0; start[1] = 0; size[0] = imageSize[idxA]; size[1] = imageSize[idxB]; region.SetIndex(start); region.SetSize(size); FloatImage2DType::Pointer image2D = FloatImage2DType::New(); image2D->SetRegions(region); image2D->Allocate(); MaskImage2DType::Pointer mask2D = MaskImage2DType::New(); mask2D->SetRegions(region); mask2D->Allocate(); MaskImage2DType::Pointer masnNoNaN2D = MaskImage2DType::New(); masnNoNaN2D->SetRegions(region); masnNoNaN2D->Allocate(); MaskImage2DType::Pointer morph2D = MaskImage2DType::New(); morph2D->SetRegions(region); morph2D->Allocate(); unsigned long voxelsInMask = 0; for (unsigned int a = 0; a < imageSize[idxA]; ++a) { for (unsigned int b = 0; b < imageSize[idxB]; ++b) { index3D[idxA] = a; index3D[idxB] = b; index3D[idxC] = i; index2D[0] = a; index2D[1] = b; image2D->SetPixel(index2D, itkFloat->GetPixel(index3D)); mask2D->SetPixel(index2D, itkMask->GetPixel(index3D)); masnNoNaN2D->SetPixel(index2D, itkMaskNoNaN->GetPixel(index3D)); morph2D->SetPixel(index2D, itkMorphMask->GetPixel(index3D)); voxelsInMask += (itkMask->GetPixel(index3D) > 0) ? 1 : 0; } } image2D->SetSpacing(spacing2D); mask2D->SetSpacing(spacing2D); masnNoNaN2D->SetSpacing(spacing2D); morph2D->SetSpacing(spacing2D); mitk::Image::Pointer tmpFloatImage = mitk::Image::New(); tmpFloatImage->InitializeByItk(image2D.GetPointer()); mitk::GrabItkImageMemory(image2D, tmpFloatImage); mitk::Image::Pointer tmpMaskImage = mitk::Image::New(); tmpMaskImage->InitializeByItk(mask2D.GetPointer()); mitk::GrabItkImageMemory(mask2D, tmpMaskImage); mitk::Image::Pointer tmpMaskNoNaNImage = mitk::Image::New(); tmpMaskNoNaNImage->InitializeByItk(masnNoNaN2D.GetPointer()); mitk::GrabItkImageMemory(masnNoNaN2D, tmpMaskNoNaNImage); mitk::Image::Pointer tmpMorphMaskImage = mitk::Image::New(); tmpMorphMaskImage->InitializeByItk(morph2D.GetPointer()); mitk::GrabItkImageMemory(morph2D, tmpMorphMaskImage); if (voxelsInMask > 0) { imageVector.push_back(tmpFloatImage); maskVector.push_back(tmpMaskImage); maskNoNaNVector.push_back(tmpMaskNoNaNImage); morphMaskVector.push_back(tmpMorphMaskImage); } } } static void SaveSliceOrImageAsPNG(mitk::Image::Pointer image, mitk::Image::Pointer mask, std::string path, int index) { // Create a Standalone Datastorage for the single purpose of saving screenshots.. mitk::StandaloneDataStorage::Pointer ds = mitk::StandaloneDataStorage::New(); QmitkRenderWindow renderWindow; renderWindow.GetRenderer()->SetDataStorage(ds); auto nodeI = mitk::DataNode::New(); nodeI->SetData(image); auto nodeM = mitk::DataNode::New(); nodeM->SetData(mask); ds->Add(nodeI); ds->Add(nodeM); auto geo = ds->ComputeBoundingGeometry3D(ds->GetAll()); mitk::RenderingManager::GetInstance()->InitializeViews(geo); mitk::SliceNavigationController::Pointer sliceNaviController = renderWindow.GetSliceNavigationController(); unsigned int numberOfSteps = 1; if (sliceNaviController) { - numberOfSteps = sliceNaviController->GetSlice()->GetSteps(); - sliceNaviController->GetSlice()->SetPos(0); + numberOfSteps = sliceNaviController->GetStepper()->GetSteps(); + sliceNaviController->GetStepper()->SetPos(0); } renderWindow.show(); renderWindow.resize(256, 256); for (unsigned int currentStep = 0; currentStep < numberOfSteps; ++currentStep) { if (sliceNaviController) { - sliceNaviController->GetSlice()->SetPos(currentStep); + sliceNaviController->GetStepper()->SetPos(currentStep); } renderWindow.GetRenderer()->PrepareRender(); vtkRenderWindow* renderWindow2 = renderWindow.GetVtkRenderWindow(); mitk::BaseRenderer* baserenderer = mitk::BaseRenderer::GetInstance(renderWindow2); auto vtkRender = baserenderer->GetVtkRenderer(); vtkRender->GetRenderWindow()->WaitForCompletion(); vtkRenderLargeImage* magnifier = vtkRenderLargeImage::New(); magnifier->SetInput(vtkRender); magnifier->SetMagnification(3.0); std::stringstream ss; ss << path << "_Idx-" << index << "_Step-"<> tmpImageName; auto fileWriter = vtkPNGWriter::New(); fileWriter->SetInputConnection(magnifier->GetOutputPort()); fileWriter->SetFileName(tmpImageName.c_str()); fileWriter->Write(); fileWriter->Delete(); } } int main(int argc, char* argv[]) { // Commented : Updated to a common interface, include, if possible, mask is type unsigned short, uses Quantification, Comments // Name follows standard scheme with Class Name::Feature Name // Commented 2: Updated to use automatic inclusion of list of parameters if required. mitk::GIFImageDescriptionFeatures::Pointer ipCalculator = mitk::GIFImageDescriptionFeatures::New(); // Commented 2, Tested mitk::GIFFirstOrderStatistics::Pointer firstOrderCalculator = mitk::GIFFirstOrderStatistics::New(); //Commented 2 mitk::GIFFirstOrderHistogramStatistics::Pointer firstOrderHistoCalculator = mitk::GIFFirstOrderHistogramStatistics::New(); // Commented 2, Tested mitk::GIFFirstOrderNumericStatistics::Pointer firstOrderNumericCalculator = mitk::GIFFirstOrderNumericStatistics::New(); // Commented 2, Tested mitk::GIFVolumetricStatistics::Pointer volCalculator = mitk::GIFVolumetricStatistics::New(); // Commented 2, Tested mitk::GIFVolumetricDensityStatistics::Pointer voldenCalculator = mitk::GIFVolumetricDensityStatistics::New(); // Commented 2, Tested mitk::GIFCooccurenceMatrix::Pointer coocCalculator = mitk::GIFCooccurenceMatrix::New(); // Commented 2, Will not be tested mitk::GIFCooccurenceMatrix2::Pointer cooc2Calculator = mitk::GIFCooccurenceMatrix2::New(); //Commented 2 mitk::GIFNeighbouringGreyLevelDependenceFeature::Pointer ngldCalculator = mitk::GIFNeighbouringGreyLevelDependenceFeature::New(); //Commented 2, Tested mitk::GIFGreyLevelRunLength::Pointer rlCalculator = mitk::GIFGreyLevelRunLength::New(); // Commented 2 mitk::GIFGreyLevelSizeZone::Pointer glszCalculator = mitk::GIFGreyLevelSizeZone::New(); // Commented 2, Tested mitk::GIFGreyLevelDistanceZone::Pointer gldzCalculator = mitk::GIFGreyLevelDistanceZone::New(); //Commented 2, Tested mitk::GIFLocalIntensity::Pointer lociCalculator = mitk::GIFLocalIntensity::New(); //Commented 2, Tested mitk::GIFIntensityVolumeHistogramFeatures::Pointer ivohCalculator = mitk::GIFIntensityVolumeHistogramFeatures::New(); // Commented 2 mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::Pointer ngtdCalculator = mitk::GIFNeighbourhoodGreyToneDifferenceFeatures::New(); //Commented 2, Tested mitk::GIFCurvatureStatistic::Pointer curvCalculator = mitk::GIFCurvatureStatistic::New(); //Commented 2, Tested std::vector features; features.push_back(volCalculator.GetPointer()); features.push_back(voldenCalculator.GetPointer()); features.push_back(curvCalculator.GetPointer()); features.push_back(firstOrderCalculator.GetPointer()); features.push_back(firstOrderNumericCalculator.GetPointer()); features.push_back(firstOrderHistoCalculator.GetPointer()); features.push_back(ivohCalculator.GetPointer()); features.push_back(lociCalculator.GetPointer()); features.push_back(coocCalculator.GetPointer()); features.push_back(cooc2Calculator.GetPointer()); features.push_back(ngldCalculator.GetPointer()); features.push_back(rlCalculator.GetPointer()); features.push_back(glszCalculator.GetPointer()); features.push_back(gldzCalculator.GetPointer()); features.push_back(ipCalculator.GetPointer()); features.push_back(ngtdCalculator.GetPointer()); mitkCommandLineParser parser; parser.setArgumentPrefix("--", "-"); mitk::cl::GlobalImageFeaturesParameter param; param.AddParameter(parser); parser.addArgument("--","-", mitkCommandLineParser::String, "---", "---", us::Any(),true); for (auto cFeature : features) { cFeature->AddArguments(parser); } parser.addArgument("--", "-", mitkCommandLineParser::String, "---", "---", us::Any(), true); parser.addArgument("description","d",mitkCommandLineParser::String,"Text","Description that is added to the output",us::Any()); parser.addArgument("direction", "dir", mitkCommandLineParser::String, "Int", "Allows to specify the direction for Cooc and RL. 0: All directions, 1: Only single direction (Test purpose), 2,3,4... Without dimension 0,1,2... ", us::Any()); parser.addArgument("slice-wise", "slice", mitkCommandLineParser::String, "Int", "Allows to specify if the image is processed slice-wise (number giving direction) ", us::Any()); parser.addArgument("output-mode", "omode", mitkCommandLineParser::Int, "Int", "Defines the format of the output. 0: (Default) results of an image / slice are written in a single row;" " 1: results of an image / slice are written in a single column; 2: store the result of on image as structured radiomocs report (XML)."); // Miniapp Infos parser.setCategory("Classification Tools"); parser.setTitle("Global Image Feature calculator"); parser.setDescription("Calculates different global statistics for a given segmentation / image combination"); parser.setContributor("German Cancer Research Center (DKFZ)"); std::map parsedArgs = parser.parseArguments(argc, argv); param.ParseParameter(parsedArgs); if (parsedArgs.size()==0) { return EXIT_FAILURE; } if ( parsedArgs.count("help") || parsedArgs.count("h")) { return EXIT_SUCCESS; } std::string version = "Version: 1.23"; MITK_INFO << version; std::ofstream log; if (param.useLogfile) { log.open(param.logfilePath, std::ios::app); log << std::endl; log << version; log << "Image: " << param.imagePath; log << "Mask: " << param.maskPath; } if (param.useDecimalPoint) { std::cout.imbue(std::locale(std::cout.getloc(), new punct_facet(param.decimalPoint))); } //representing the original loaded image data without any prepropcessing that might come. mitk::Image::Pointer loadedImage = mitk::IOUtil::Load(param.imagePath); //representing the original loaded mask data without any prepropcessing that might come. mitk::Image::Pointer loadedMask = mitk::IOUtil::Load(param.maskPath); mitk::Image::Pointer image = loadedImage; mitk::Image::Pointer mask = loadedMask; mitk::Image::Pointer tmpImage = loadedImage; mitk::Image::Pointer tmpMask = loadedMask; mitk::Image::Pointer morphMask = mask; if (param.useMorphMask) { morphMask = mitk::IOUtil::Load(param.morphPath); } log << " Check for Dimensions -"; if ((image->GetDimension() != mask->GetDimension())) { MITK_INFO << "Dimension of image does not match. "; MITK_INFO << "Correct one image, may affect the result"; if (image->GetDimension() == 2) { mitk::Convert2Dto3DImageFilter::Pointer multiFilter2 = mitk::Convert2Dto3DImageFilter::New(); multiFilter2->SetInput(tmpImage); multiFilter2->Update(); image = multiFilter2->GetOutput(); } if (mask->GetDimension() == 2) { mitk::Convert2Dto3DImageFilter::Pointer multiFilter3 = mitk::Convert2Dto3DImageFilter::New(); multiFilter3->SetInput(tmpMask); multiFilter3->Update(); mask = multiFilter3->GetOutput(); } } int writeDirection = 0; if (parsedArgs.count("output-mode")) { writeDirection = us::any_cast(parsedArgs["output-mode"]); } log << " Check for Resolution -"; if (param.resampleToFixIsotropic) { mitk::Image::Pointer newImage = mitk::Image::New(); AccessByItk_2(image, ResampleImage, param.resampleResolution, newImage); image = newImage; } log << " Resample if required -"; if (param.resampleMask) { mitk::Image::Pointer newMaskImage = mitk::Image::New(); AccessByItk_2(mask, ResampleMask, image, newMaskImage); mask = newMaskImage; } if ( ! mitk::Equal(mask->GetGeometry(0)->GetOrigin(), image->GetGeometry(0)->GetOrigin())) { MITK_INFO << "Not equal Origins"; if (param.ensureSameSpace) { MITK_INFO << "Warning!"; MITK_INFO << "The origin of the input image and the mask do not match. They are"; MITK_INFO << "now corrected. Please check to make sure that the images still match"; image->GetGeometry(0)->SetOrigin(mask->GetGeometry(0)->GetOrigin()); } else { return -1; } } log << " Check for Equality -"; if ( ! mitk::Equal(mask->GetGeometry(0)->GetSpacing(), image->GetGeometry(0)->GetSpacing())) { MITK_INFO << "Not equal Spacing"; if (param.ensureSameSpace) { MITK_INFO << "Warning!"; MITK_INFO << "The spacing of the mask was set to match the spacing of the input image."; MITK_INFO << "This might cause unintended spacing of the mask image"; image->GetGeometry(0)->SetSpacing(mask->GetGeometry(0)->GetSpacing()); } else { MITK_INFO << "The spacing of the mask and the input images is not equal."; MITK_INFO << "Terminating the programm. You may use the '-fi' option"; return -1; } } int direction = 0; if (parsedArgs.count("direction")) { direction = mitk::cl::splitDouble(parsedArgs["direction"].ToString(), ';')[0]; } MITK_INFO << "Start creating Mask without NaN"; mitk::Image::Pointer maskNoNaN = mitk::Image::New(); AccessByItk_2(image, CreateNoNaNMask, mask, maskNoNaN); //CreateNoNaNMask(mask, image, maskNoNaN); bool sliceWise = false; int sliceDirection = 0; unsigned int currentSlice = 0; bool imageToProcess = true; std::vector floatVector; std::vector maskVector; std::vector maskNoNaNVector; std::vector morphMaskVector; if ((parsedArgs.count("slice-wise")) && image->GetDimension() > 2) { MITK_INFO << "Enabled slice-wise"; sliceWise = true; sliceDirection = mitk::cl::splitDouble(parsedArgs["slice-wise"].ToString(), ';')[0]; MITK_INFO << sliceDirection; ExtractSlicesFromImages(image, mask, maskNoNaN, morphMask, sliceDirection, floatVector, maskVector, maskNoNaNVector, morphMaskVector); MITK_INFO << "Slice"; } log << " Configure features -"; for (auto cFeature : features) { if (param.defineGlobalMinimumIntensity) { cFeature->SetMinimumIntensity(param.globalMinimumIntensity); cFeature->SetUseMinimumIntensity(true); } if (param.defineGlobalMaximumIntensity) { cFeature->SetMaximumIntensity(param.globalMaximumIntensity); cFeature->SetUseMaximumIntensity(true); } if (param.defineGlobalNumberOfBins) { cFeature->SetBins(param.globalNumberOfBins); MITK_INFO << param.globalNumberOfBins; } cFeature->SetParameters(parsedArgs); cFeature->SetDirection(direction); cFeature->SetEncodeParametersInFeaturePrefix(param.encodeParameter); } bool addDescription = parsedArgs.count("description"); mitk::cl::FeatureResultWriter writer(param.outputPath, writeDirection); if (param.useDecimalPoint) { writer.SetDecimalPoint(param.decimalPoint); } std::string description = ""; if (addDescription) { description = parsedArgs["description"].ToString(); } mitk::Image::Pointer cImage = image; mitk::Image::Pointer cMask = mask; mitk::Image::Pointer cMaskNoNaN = maskNoNaN; mitk::Image::Pointer cMorphMask = morphMask; if (param.useHeader) { writer.AddColumn("SoftwareVersion"); writer.AddColumn("Patient"); writer.AddColumn("Image"); writer.AddColumn("Segmentation"); } // Create a QTApplication and a Datastorage // This is necessary in order to save screenshots of // each image / slice. QApplication qtapplication(argc, argv); QmitkRegisterClasses(); std::vector allStats; log << " Begin Processing -"; while (imageToProcess) { if (sliceWise) { cImage = floatVector[currentSlice]; cMask = maskVector[currentSlice]; cMaskNoNaN = maskNoNaNVector[currentSlice]; cMorphMask = morphMaskVector[currentSlice]; imageToProcess = (floatVector.size()-1 > (currentSlice)) ? true : false ; } else { imageToProcess = false; } if (param.writePNGScreenshots) { SaveSliceOrImageAsPNG(cImage, cMask, param.pngScreenshotsPath, currentSlice); } if (param.writeAnalysisImage) { mitk::IOUtil::Save(cImage, param.anaylsisImagePath); } if (param.writeAnalysisMask) { mitk::IOUtil::Save(cMask, param.analysisMaskPath); } mitk::AbstractGlobalImageFeature::FeatureListType stats; for (auto cFeature : features) { log << " Calculating " << cFeature->GetFeatureClassName() << " -"; cFeature->SetMorphMask(cMorphMask); cFeature->CalculateAndAppendFeatures(cImage, cMask, cMaskNoNaN, stats, !param.calculateAllFeatures); } for (std::size_t i = 0; i < stats.size(); ++i) { std::cout << stats[i].first.legacyName << " - " << stats[i].second << std::endl; } writer.AddHeader(description, currentSlice, stats, param.useHeader, addDescription); if (true) { writer.AddSubjectInformation(MITK_REVISION); writer.AddSubjectInformation(param.imageFolder); writer.AddSubjectInformation(param.imageName); writer.AddSubjectInformation(param.maskName); } writer.AddResult(description, currentSlice, stats, param.useHeader, addDescription); allStats.push_back(stats); ++currentSlice; } log << " Process Slicewise -"; if (sliceWise) { mitk::AbstractGlobalImageFeature::FeatureListType statMean, statStd; for (std::size_t i = 0; i < allStats[0].size(); ++i) { auto cElement1 = allStats[0][i]; cElement1.first.legacyName = "SliceWise Mean " + cElement1.first.legacyName; cElement1.second = 0.0; auto cElement2 = allStats[0][i]; cElement2.first.legacyName = "SliceWise Var. " + cElement2.first.legacyName; cElement2.second = 0.0; statMean.push_back(cElement1); statStd.push_back(cElement2); } for (auto cStat : allStats) { for (std::size_t i = 0; i < cStat.size(); ++i) { statMean[i].second += cStat[i].second / (1.0*allStats.size()); } } for (auto cStat : allStats) { for (std::size_t i = 0; i < cStat.size(); ++i) { statStd[i].second += (cStat[i].second - statMean[i].second)*(cStat[i].second - statMean[i].second) / (1.0*allStats.size()); } } for (std::size_t i = 0; i < statMean.size(); ++i) { std::cout << statMean[i].first.legacyName << " - " << statMean[i].second << std::endl; std::cout << statStd[i].first.legacyName << " - " << statStd[i].second << std::endl; } if (true) { writer.AddSubjectInformation(MITK_REVISION); writer.AddSubjectInformation(param.imageFolder); writer.AddSubjectInformation(param.imageName); writer.AddSubjectInformation(param.maskName + " - Mean"); } writer.AddResult(description, currentSlice, statMean, param.useHeader, addDescription); if (true) { writer.AddSubjectInformation(MITK_REVISION); writer.AddSubjectInformation(param.imageFolder); writer.AddSubjectInformation(param.imageName); writer.AddSubjectInformation(param.maskName + " - Var."); } writer.AddResult(description, currentSlice, statStd, param.useHeader, addDescription); } int returnCode = EXIT_SUCCESS; if (!param.outputXMLPath.empty()) { if (sliceWise) { MITK_ERROR << "Xml output is not supported in slicewise mode"; returnCode = EXIT_FAILURE; } else { mitk::cl::CLResultXMLWriter xmlWriter; xmlWriter.SetCLIArgs(parsedArgs); xmlWriter.SetFeatures(allStats.front()); xmlWriter.SetImage(loadedImage); xmlWriter.SetMask(loadedMask); xmlWriter.SetMethodName("CLGlobalImageFeatures"); xmlWriter.SetMethodVersion(version + "(mitk: " MITK_VERSION_STRING+")"); xmlWriter.SetOrganisation("German Cancer Research Center (DKFZ)"); xmlWriter.SetPipelineUID(param.pipelineUID); xmlWriter.write(param.outputXMLPath); } } if (param.useLogfile) { log << "Finished calculation" << std::endl; log.close(); } return returnCode; } #endif diff --git a/Modules/Classification/CLMiniApps/CLScreenshot.cpp b/Modules/Classification/CLMiniApps/CLScreenshot.cpp index 439d62b1c5..ad7532da5b 100644 --- a/Modules/Classification/CLMiniApps/CLScreenshot.cpp +++ b/Modules/Classification/CLMiniApps/CLScreenshot.cpp @@ -1,167 +1,167 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkCLPolyToNrrd_cpp #define mitkCLPolyToNrrd_cpp #include "time.h" #include #include #include #include "mitkCommandLineParser.h" #include #include #include #include #include "QmitkRegisterClasses.h" #include "QmitkRenderWindow.h" #include "vtkRenderLargeImage.h" #include "vtkPNGWriter.h" static void SaveSliceOrImageAsPNG(std::vector listOfOutputs, std::string path) { std::vector colorList; colorList.push_back(mitk::ColorProperty::New(0.9569, 0.16471, 0.25490)); // Red colorList.push_back(mitk::ColorProperty::New(1, 0.839, 0)); // Yellow colorList.push_back(mitk::ColorProperty::New(0, 0.6, 0.2)); // Green colorList.push_back(mitk::ColorProperty::New(0, 0.2784, 0.7255)); // BLue colorList.push_back(mitk::ColorProperty::New(1,0.3608,0)); // Orange colorList.push_back(mitk::ColorProperty::New(0.839215,0.141176,0.80784)); // Violett colorList.push_back(mitk::ColorProperty::New(0.1372,0.81568,0.7647)); // Turkis colorList.push_back(mitk::ColorProperty::New(0.61176,0.9568,0.16078)); // Bright Green colorList.push_back(mitk::ColorProperty::New(1,0.4274,0.16862)); // Dark Orange colorList.push_back(mitk::ColorProperty::New(0.88633,0.14901,0.64705)); // Pink // Create a Standalone Datastorage for the single purpose of saving screenshots.. mitk::StandaloneDataStorage::Pointer ds = mitk::StandaloneDataStorage::New(); QmitkRenderWindow renderWindow; renderWindow.GetRenderer()->SetDataStorage(ds); int numberOfSegmentations = 0; bool isSegmentation = false; for (auto name : listOfOutputs) { mitk::Image::Pointer tmpImage = mitk::IOUtil::Load(name); auto nodeI = mitk::DataNode::New(); nodeI->SetData(tmpImage); nodeI->GetPropertyValue("binary",isSegmentation); if (isSegmentation) { nodeI->SetProperty("color", colorList[numberOfSegmentations % colorList.size()]); nodeI->SetProperty("binaryimage.hoveringannotationcolor", colorList[numberOfSegmentations % colorList.size()]); nodeI->SetProperty("binaryimage.hoveringcolor", colorList[numberOfSegmentations % colorList.size()]); nodeI->SetProperty("binaryimage.selectedannotationcolor", colorList[numberOfSegmentations % colorList.size()]); nodeI->SetProperty("binaryimage.selectedcolor", colorList[numberOfSegmentations % colorList.size()]); numberOfSegmentations++; } ds->Add(nodeI); } auto geo = ds->ComputeBoundingGeometry3D(ds->GetAll()); mitk::RenderingManager::GetInstance()->InitializeViews(geo); mitk::SliceNavigationController::Pointer sliceNaviController = renderWindow.GetSliceNavigationController(); unsigned int numberOfSteps = 1; if (sliceNaviController) { - numberOfSteps = sliceNaviController->GetSlice()->GetSteps(); - sliceNaviController->GetSlice()->SetPos(0); + numberOfSteps = sliceNaviController->GetStepper()->GetSteps(); + sliceNaviController->GetStepper()->SetPos(0); } renderWindow.show(); renderWindow.resize(512, 512); for (unsigned int currentStep = 0; currentStep < numberOfSteps; ++currentStep) { if (sliceNaviController) { - sliceNaviController->GetSlice()->SetPos(currentStep); + sliceNaviController->GetStepper()->SetPos(currentStep); } renderWindow.GetRenderer()->PrepareRender(); vtkRenderWindow* renderWindow2 = renderWindow.GetVtkRenderWindow(); mitk::BaseRenderer* baserenderer = mitk::BaseRenderer::GetInstance(renderWindow2); auto vtkRender = baserenderer->GetVtkRenderer(); vtkRender->GetRenderWindow()->WaitForCompletion(); vtkRenderLargeImage* magnifier = vtkRenderLargeImage::New(); magnifier->SetInput(vtkRender); magnifier->SetMagnification(3.0); std::stringstream ss; ss << path << "screenshot_step-"<> tmpImageName; auto fileWriter = vtkPNGWriter::New(); fileWriter->SetInputConnection(magnifier->GetOutputPort()); fileWriter->SetFileName(tmpImageName.c_str()); fileWriter->Write(); fileWriter->Delete(); } } int main(int argc, char* argv[]) { mitkCommandLineParser parser; parser.setArgumentPrefix("--", "-"); // Required Parameter parser.addArgument("image", "i", mitkCommandLineParser::Image, "Input Image", "Path to the input image files (Separated with semicolons)", us::Any(), false, false, false, mitkCommandLineParser::Input); parser.addArgument("output", "o", mitkCommandLineParser::File, "Output text file", "Path to output file. The output statistic is appended to this file.", us::Any(), false, false, false, mitkCommandLineParser::Output); parser.addArgument("direction", "dir", mitkCommandLineParser::String, "Int", "Allows to specify the direction for Cooc and RL. 0: All directions, 1: Only single direction (Test purpose), 2,3,4... Without dimension 0,1,2... ", us::Any()); // Miniapp Infos parser.setCategory("Classification Tools"); parser.setTitle("Screenshot of a single image"); parser.setDescription(""); parser.setContributor("German Cancer Research Center (DKFZ)"); std::map parsedArgs = parser.parseArguments(argc, argv); if (parsedArgs.size()==0) { return EXIT_FAILURE; } if ( parsedArgs.count("help") || parsedArgs.count("h")) { return EXIT_SUCCESS; } std::string version = "Version: 1.0"; MITK_INFO << version; //int direction = 0; if (parsedArgs.count("direction")) { MITK_INFO << "Warning: Option direction currently not supported"; // direction = mitk::cl::splitDouble(parsedArgs["direction"].ToString(), ';')[0]; } auto listOfFiles = mitk::cl::splitString(parsedArgs["image"].ToString(), ';'); // Create a QTApplication and a Datastorage // This is necessary in order to save screenshots of // each image / slice. QApplication qtapplication(argc, argv); QmitkRegisterClasses(); SaveSliceOrImageAsPNG(listOfFiles, parsedArgs["output"].ToString()); return 0; } #endif diff --git a/Modules/Core/TestingHelper/src/mitkInteractionTestHelper.cpp b/Modules/Core/TestingHelper/src/mitkInteractionTestHelper.cpp index bfb05627d7..b03a5bdfc1 100644 --- a/Modules/Core/TestingHelper/src/mitkInteractionTestHelper.cpp +++ b/Modules/Core/TestingHelper/src/mitkInteractionTestHelper.cpp @@ -1,435 +1,422 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ // MITK #include #include #include #include +#include #include +#include // VTK #include #include // us #include #include mitk::InteractionTestHelper::InteractionTestHelper(const std::string &interactionXmlFilePath) : m_InteractionFilePath(interactionXmlFilePath) { this->Initialize(interactionXmlFilePath); } void mitk::InteractionTestHelper::Initialize(const std::string &interactionXmlFilePath) { tinyxml2::XMLDocument document; if (tinyxml2::XML_SUCCESS == document.LoadFile(interactionXmlFilePath.c_str())) { - // get RenderingManager instance - auto rm = mitk::RenderingManager::GetInstance(); - // create data storage m_DataStorage = mitk::StandaloneDataStorage::New(); // for each renderer found create a render window and configure for (auto *element = document.FirstChildElement(mitk::InteractionEventConst::xmlTagInteractions().c_str()) ->FirstChildElement(mitk::InteractionEventConst::xmlTagConfigRoot().c_str()) ->FirstChildElement(mitk::InteractionEventConst::xmlTagRenderer().c_str()); element != nullptr; element = element->NextSiblingElement(mitk::InteractionEventConst::xmlTagRenderer().c_str())) { // get name of renderer const char *rendererName = element->Attribute(mitk::InteractionEventConst::xmlEventPropertyRendererName().c_str()); // get view direction mitk::AnatomicalPlane viewDirection = mitk::AnatomicalPlane::Axial; if (element->Attribute(mitk::InteractionEventConst::xmlEventPropertyViewDirection().c_str()) != nullptr) { int viewDirectionNum = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlEventPropertyViewDirection().c_str())); viewDirection = static_cast(viewDirectionNum); } // get mapper slot id MapperSlotId mapperID = mitk::BaseRenderer::Standard2D; if (element->Attribute(mitk::InteractionEventConst::xmlEventPropertyMapperID().c_str()) != nullptr) { int mapperIDNum = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlEventPropertyMapperID().c_str())); mapperID = static_cast(mapperIDNum); } // Get Size of Render Windows int size[3]; size[0] = size[1] = size[2] = 0; if (element->Attribute(mitk::InteractionEventConst::xmlRenderSizeX().c_str()) != nullptr) { size[0] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlRenderSizeX().c_str())); } if (element->Attribute(mitk::InteractionEventConst::xmlRenderSizeY().c_str()) != nullptr) { size[1] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlRenderSizeY().c_str())); } if (element->Attribute(mitk::InteractionEventConst::xmlRenderSizeZ().c_str()) != nullptr) { size[2] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlRenderSizeZ().c_str())); } // create renderWindow, renderer and dispatcher auto rw = RenderWindow::New(nullptr, rendererName); // VtkRenderWindow is created within constructor if nullptr if (size[0] != 0 && size[1] != 0) { rw->SetSize(size[0], size[1]); rw->GetRenderer()->Resize(size[0], size[1]); } // set storage of renderer rw->GetRenderer()->SetDataStorage(m_DataStorage); // set view direction to axial rw->GetSliceNavigationController()->SetDefaultViewDirection(viewDirection); // set renderer to render 2D rw->GetRenderer()->SetMapperID(mapperID); rw->GetRenderer()->PrepareRender(); // Some more magic for the 3D render window case: // Camera view direction, position and focal point if (mapperID == mitk::BaseRenderer::Standard3D) { if (element->Attribute(mitk::InteractionEventConst::xmlCameraFocalPointX().c_str()) != nullptr) { double cameraFocalPoint[3]; cameraFocalPoint[0] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlCameraFocalPointX().c_str())); cameraFocalPoint[1] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlCameraFocalPointY().c_str())); cameraFocalPoint[2] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlCameraFocalPointZ().c_str())); rw->GetRenderer()->GetVtkRenderer()->GetActiveCamera()->SetFocalPoint(cameraFocalPoint); } if (element->Attribute(mitk::InteractionEventConst::xmlCameraPositionX().c_str()) != nullptr) { double cameraPosition[3]; cameraPosition[0] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlCameraPositionX().c_str())); cameraPosition[1] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlCameraPositionY().c_str())); cameraPosition[2] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlCameraPositionZ().c_str())); rw->GetRenderer()->GetVtkRenderer()->GetActiveCamera()->SetPosition(cameraPosition); } if (element->Attribute(mitk::InteractionEventConst::xmlViewUpX().c_str()) != nullptr) { double viewUp[3]; viewUp[0] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlViewUpX().c_str())); viewUp[1] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlViewUpY().c_str())); viewUp[2] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlViewUpZ().c_str())); rw->GetRenderer()->GetVtkRenderer()->GetActiveCamera()->SetViewUp(viewUp); } } rw->GetVtkRenderWindow()->Render(); rw->GetVtkRenderWindow()->WaitForCompletion(); - // connect SliceNavigationControllers to timestep changed event of TimeNavigationController - rw->GetSliceNavigationController()->ConnectGeometryTimeEvent(rm->GetTimeNavigationController()); - rm->GetTimeNavigationController()->ConnectGeometryTimeEvent(rw->GetSliceNavigationController()); - // add to list of known render windows m_RenderWindowList.push_back(rw); } - // TODO: check the following lines taken from QmitkStdMultiWidget and adapt them to be executed in our code here. - // mitkWidget1->GetSliceNavigationController() - // ->ConnectGeometrySendEvent(mitk::BaseRenderer::GetInstance(mitkWidget4->GetRenderWindow())); - // register interaction event obserer to handle scroll events InitializeDisplayActionEventHandling(); } else { mitkThrow() << "Can not load interaction xml file <" << m_InteractionFilePath << ">"; } // WARNING assumes a 3D window exists !!!! this->AddDisplayPlaneSubTree(); } void mitk::InteractionTestHelper::InitializeDisplayActionEventHandling() { m_DisplayActionEventBroadcast = mitk::DisplayActionEventBroadcast::New(); m_DisplayActionEventBroadcast->LoadStateMachine("DisplayInteraction.xml"); m_DisplayActionEventBroadcast->SetEventConfig("DisplayConfigMITKBase.xml"); m_DisplayActionEventBroadcast->AddEventConfig("DisplayConfigCrosshair.xml"); } mitk::InteractionTestHelper::~InteractionTestHelper() { - mitk::RenderingManager *rm = mitk::RenderingManager::GetInstance(); - // unregister renderers auto it = m_RenderWindowList.begin(); auto end = m_RenderWindowList.end(); for (; it != end; ++it) { - rm->GetTimeNavigationController()->Disconnect((*it)->GetSliceNavigationController()); - (*it)->GetSliceNavigationController()->Disconnect(rm->GetTimeNavigationController()); mitk::BaseRenderer::RemoveInstance((*it)->GetVtkRenderWindow()); } - rm->RemoveAllObservers(); + + mitk::RenderingManager::GetInstance()->RemoveAllObservers(); } mitk::DataStorage::Pointer mitk::InteractionTestHelper::GetDataStorage() { return m_DataStorage; } void mitk::InteractionTestHelper::AddNodeToStorage(mitk::DataNode::Pointer node) { this->m_DataStorage->Add(node); this->Set3dCameraSettings(); } void mitk::InteractionTestHelper::PlaybackInteraction() { mitk::RenderingManager::GetInstance()->InitializeViewsByBoundingObjects(m_DataStorage); // load events if not loaded yet if (m_Events.empty()) this->LoadInteraction(); auto it = m_RenderWindowList.begin(); auto end = m_RenderWindowList.end(); for (; it != end; ++it) { (*it)->GetRenderer()->PrepareRender(); (*it)->GetVtkRenderWindow()->Render(); (*it)->GetVtkRenderWindow()->WaitForCompletion(); } mitk::RenderingManager::GetInstance()->InitializeViewsByBoundingObjects(m_DataStorage); it = m_RenderWindowList.begin(); for (; it != end; ++it) { (*it)->GetVtkRenderWindow()->Render(); (*it)->GetVtkRenderWindow()->WaitForCompletion(); } // mitk::RenderingManager::GetInstance()->ForceImmediateUpdateAll(); // playback all events in queue for (unsigned long i = 0; i < m_Events.size(); ++i) { // let dispatcher of sending renderer process the event m_Events.at(i)->GetSender()->GetDispatcher()->ProcessEvent(m_Events.at(i)); } if (false) { it--; (*it)->GetVtkRenderWindow()->GetInteractor()->Start(); } } void mitk::InteractionTestHelper::LoadInteraction() { // load interaction pattern from xml file std::ifstream xmlStream(m_InteractionFilePath.c_str()); mitk::XML2EventParser parser(xmlStream); m_Events = parser.GetInteractions(); xmlStream.close(); // Avoid VTK warning: Trying to delete object with non-zero reference count. parser.SetReferenceCount(0); } void mitk::InteractionTestHelper::SetTimeStep(int newTimeStep) { - mitk::RenderingManager::GetInstance()->InitializeViewsByBoundingObjects(m_DataStorage); + auto rm = mitk::RenderingManager::GetInstance(); + rm->InitializeViewsByBoundingObjects(m_DataStorage); - bool timeStepIsvalid = - mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetCreatedWorldGeometry()->IsValidTimeStep( - newTimeStep); + bool timeStepIsvalid = rm->GetTimeNavigationController()->GetInputWorldTimeGeometry()->IsValidTimeStep(newTimeStep); if (timeStepIsvalid) { - mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetTime()->SetPos(newTimeStep); + rm->GetTimeNavigationController()->GetStepper()->SetPos(newTimeStep); } } mitk::RenderWindow *mitk::InteractionTestHelper::GetRenderWindowByName(const std::string &name) { auto it = m_RenderWindowList.begin(); auto end = m_RenderWindowList.end(); for (; it != end; ++it) { if (name.compare((*it)->GetRenderer()->GetName()) == 0) return (*it).GetPointer(); } return nullptr; } mitk::RenderWindow *mitk::InteractionTestHelper::GetRenderWindowByDefaultViewDirection(AnatomicalPlane viewDirection) { auto it = m_RenderWindowList.begin(); auto end = m_RenderWindowList.end(); for (; it != end; ++it) { if (viewDirection == (*it)->GetSliceNavigationController()->GetDefaultViewDirection()) return (*it).GetPointer(); } return nullptr; } mitk::RenderWindow *mitk::InteractionTestHelper::GetRenderWindow(unsigned int index) { if (index < m_RenderWindowList.size()) { return m_RenderWindowList.at(index).GetPointer(); } else { return nullptr; } } void mitk::InteractionTestHelper::AddDisplayPlaneSubTree() { // add the displayed planes of the multiwidget to a node to which the subtree // @a planesSubTree points ... mitk::PlaneGeometryDataMapper2D::Pointer mapper; mitk::IntProperty::Pointer layer = mitk::IntProperty::New(1000); mitk::DataNode::Pointer node = mitk::DataNode::New(); node->SetProperty("name", mitk::StringProperty::New("Widgets")); node->SetProperty("helper object", mitk::BoolProperty::New(true)); m_DataStorage->Add(node); for (auto it : m_RenderWindowList) { if (it->GetRenderer()->GetMapperID() == BaseRenderer::Standard3D) continue; // ... of widget 1 mitk::DataNode::Pointer planeNode1 = (mitk::BaseRenderer::GetInstance(it->GetVtkRenderWindow()))->GetCurrentWorldPlaneGeometryNode(); planeNode1->SetProperty("visible", mitk::BoolProperty::New(true)); planeNode1->SetProperty("name", mitk::StringProperty::New("widget1Plane")); planeNode1->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); planeNode1->SetProperty("helper object", mitk::BoolProperty::New(true)); planeNode1->SetProperty("layer", layer); planeNode1->SetColor(1.0, 0.0, 0.0); mapper = mitk::PlaneGeometryDataMapper2D::New(); planeNode1->SetMapper(mitk::BaseRenderer::Standard2D, mapper); m_DataStorage->Add(planeNode1, node); } } void mitk::InteractionTestHelper::Set3dCameraSettings() { tinyxml2::XMLDocument document; if (tinyxml2::XML_SUCCESS == document.LoadFile(m_InteractionFilePath.c_str())) { // for each renderer found create a render window and configure for (auto *element = document.FirstChildElement(mitk::InteractionEventConst::xmlTagInteractions().c_str()) ->FirstChildElement(mitk::InteractionEventConst::xmlTagConfigRoot().c_str()) ->FirstChildElement(mitk::InteractionEventConst::xmlTagRenderer().c_str()); element != nullptr; element = element->NextSiblingElement(mitk::InteractionEventConst::xmlTagRenderer().c_str())) { // get name of renderer const char *rendererName = element->Attribute(mitk::InteractionEventConst::xmlEventPropertyRendererName().c_str()); // get mapper slot id MapperSlotId mapperID = mitk::BaseRenderer::Standard2D; if (element->Attribute(mitk::InteractionEventConst::xmlEventPropertyMapperID().c_str()) != nullptr) { int mapperIDNum = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlEventPropertyMapperID().c_str())); mapperID = static_cast(mapperIDNum); } if (mapperID == mitk::BaseRenderer::Standard3D) { RenderWindow *namedRenderer = nullptr; for (const auto &it : m_RenderWindowList) { if (strcmp(it->GetRenderer()->GetName(), rendererName) == 0) { namedRenderer = it.GetPointer(); break; } } if (namedRenderer == nullptr) { MITK_ERROR << "No match for render window was found."; return; } namedRenderer->GetRenderer()->PrepareRender(); if (element->Attribute(mitk::InteractionEventConst::xmlCameraFocalPointX().c_str()) != nullptr) { double cameraFocalPoint[3]; cameraFocalPoint[0] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlCameraFocalPointX().c_str())); cameraFocalPoint[1] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlCameraFocalPointY().c_str())); cameraFocalPoint[2] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlCameraFocalPointZ().c_str())); namedRenderer->GetRenderer()->GetVtkRenderer()->GetActiveCamera()->SetFocalPoint(cameraFocalPoint); } if (element->Attribute(mitk::InteractionEventConst::xmlCameraPositionX().c_str()) != nullptr) { double cameraPosition[3]; cameraPosition[0] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlCameraPositionX().c_str())); cameraPosition[1] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlCameraPositionY().c_str())); cameraPosition[2] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlCameraPositionZ().c_str())); namedRenderer->GetRenderer()->GetVtkRenderer()->GetActiveCamera()->SetPosition(cameraPosition); } if (element->Attribute(mitk::InteractionEventConst::xmlViewUpX().c_str()) != nullptr) { double viewUp[3]; viewUp[0] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlViewUpX().c_str())); viewUp[1] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlViewUpY().c_str())); viewUp[2] = std::atoi(element->Attribute(mitk::InteractionEventConst::xmlViewUpZ().c_str())); namedRenderer->GetRenderer()->GetVtkRenderer()->GetActiveCamera()->SetViewUp(viewUp); } namedRenderer->GetVtkRenderWindow()->Render(); } } } } diff --git a/Modules/Core/files.cmake b/Modules/Core/files.cmake index 7a28848686..d8412455d1 100644 --- a/Modules/Core/files.cmake +++ b/Modules/Core/files.cmake @@ -1,328 +1,329 @@ file(GLOB_RECURSE H_FILES RELATIVE "${CMAKE_CURRENT_SOURCE_DIR}" "${CMAKE_CURRENT_SOURCE_DIR}/include/*") set(CPP_FILES mitkCoreActivator.cpp mitkCoreObjectFactoryBase.cpp mitkCoreObjectFactory.cpp mitkCoreServices.cpp mitkException.cpp Algorithms/mitkBaseDataSource.cpp Algorithms/mitkClippedSurfaceBoundsCalculator.cpp Algorithms/mitkCompareImageDataFilter.cpp Algorithms/mitkCompositePixelValueToString.cpp Algorithms/mitkConvert2Dto3DImageFilter.cpp Algorithms/mitkDataNodeSource.cpp Algorithms/mitkExtractSliceFilter.cpp Algorithms/mitkExtractSliceFilter2.cpp Algorithms/mitkHistogramGenerator.cpp Algorithms/mitkImageChannelSelector.cpp Algorithms/mitkImageSliceSelector.cpp Algorithms/mitkImageSource.cpp Algorithms/mitkImageTimeSelector.cpp Algorithms/mitkImageToImageFilter.cpp Algorithms/mitkImageToSurfaceFilter.cpp Algorithms/mitkMultiComponentImageDataComparisonFilter.cpp Algorithms/mitkPlaneGeometryDataToSurfaceFilter.cpp Algorithms/mitkPointSetSource.cpp Algorithms/mitkPointSetToPointSetFilter.cpp Algorithms/mitkRGBToRGBACastImageFilter.cpp Algorithms/mitkSubImageSelector.cpp Algorithms/mitkSurfaceSource.cpp Algorithms/mitkSurfaceToImageFilter.cpp Algorithms/mitkSurfaceToSurfaceFilter.cpp Algorithms/mitkUIDGenerator.cpp Algorithms/mitkVolumeCalculator.cpp Algorithms/mitkTemporalJoinImagesFilter.cpp Controllers/mitkBaseController.cpp Controllers/mitkCallbackFromGUIThread.cpp Controllers/mitkCameraController.cpp Controllers/mitkCameraRotationController.cpp Controllers/mitkCrosshairManager.cpp Controllers/mitkLimitedLinearUndo.cpp Controllers/mitkOperationEvent.cpp Controllers/mitkPlanePositionManager.cpp Controllers/mitkProgressBar.cpp Controllers/mitkRenderingManager.cpp Controllers/mitkSliceNavigationController.cpp Controllers/mitkSliceNavigationHelper.cpp Controllers/mitkStatusBar.cpp Controllers/mitkStepper.cpp Controllers/mitkTestManager.cpp + Controllers/mitkTimeNavigationController.cpp Controllers/mitkUndoController.cpp Controllers/mitkVerboseLimitedLinearUndo.cpp Controllers/mitkVtkLayerController.cpp DataManagement/mitkAnatomicalStructureColorPresets.cpp DataManagement/mitkArbitraryTimeGeometry.cpp DataManagement/mitkAbstractTransformGeometry.cpp DataManagement/mitkAnnotationProperty.cpp DataManagement/mitkApplicationCursor.cpp DataManagement/mitkApplyTransformMatrixOperation.cpp DataManagement/mitkBaseData.cpp DataManagement/mitkBaseGeometry.cpp DataManagement/mitkBaseProperty.cpp DataManagement/mitkChannelDescriptor.cpp DataManagement/mitkClippingProperty.cpp DataManagement/mitkColorProperty.cpp DataManagement/mitkCrosshairData.cpp DataManagement/mitkDataNode.cpp DataManagement/mitkDataStorage.cpp DataManagement/mitkEnumerationProperty.cpp DataManagement/mitkFloatPropertyExtension.cpp DataManagement/mitkGeometry3D.cpp DataManagement/mitkGeometryData.cpp DataManagement/mitkGeometryTransformHolder.cpp DataManagement/mitkGroupTagProperty.cpp DataManagement/mitkGenericIDRelationRule.cpp DataManagement/mitkIdentifiable.cpp DataManagement/mitkImageAccessorBase.cpp DataManagement/mitkImageCaster.cpp DataManagement/mitkImageCastPart1.cpp DataManagement/mitkImageCastPart2.cpp DataManagement/mitkImageCastPart3.cpp DataManagement/mitkImageCastPart4.cpp DataManagement/mitkImage.cpp DataManagement/mitkImageDataItem.cpp DataManagement/mitkImageDescriptor.cpp DataManagement/mitkImageReadAccessor.cpp DataManagement/mitkImageStatisticsHolder.cpp DataManagement/mitkImageVtkAccessor.cpp DataManagement/mitkImageVtkReadAccessor.cpp DataManagement/mitkImageVtkWriteAccessor.cpp DataManagement/mitkImageWriteAccessor.cpp DataManagement/mitkIntPropertyExtension.cpp DataManagement/mitkIPersistenceService.cpp DataManagement/mitkIPropertyAliases.cpp DataManagement/mitkIPropertyDescriptions.cpp DataManagement/mitkIPropertyExtensions.cpp DataManagement/mitkIPropertyFilters.cpp DataManagement/mitkIPropertyOwner.cpp DataManagement/mitkIPropertyPersistence.cpp DataManagement/mitkIPropertyProvider.cpp DataManagement/mitkLandmarkProjectorBasedCurvedGeometry.cpp DataManagement/mitkLandmarkProjector.cpp DataManagement/mitkLevelWindow.cpp DataManagement/mitkLevelWindowManager.cpp DataManagement/mitkLevelWindowPreset.cpp DataManagement/mitkLevelWindowProperty.cpp DataManagement/mitkLine.cpp DataManagement/mitkLookupTable.cpp DataManagement/mitkLookupTableProperty.cpp DataManagement/mitkLookupTables.cpp # specializations of GenericLookupTable DataManagement/mitkMaterial.cpp DataManagement/mitkMemoryUtilities.cpp DataManagement/mitkModalityProperty.cpp DataManagement/mitkModifiedLock.cpp DataManagement/mitkNodePredicateAnd.cpp DataManagement/mitkNodePredicateBase.cpp DataManagement/mitkNodePredicateCompositeBase.cpp DataManagement/mitkNodePredicateData.cpp DataManagement/mitkNodePredicateDataType.cpp DataManagement/mitkNodePredicateDataUID.cpp DataManagement/mitkNodePredicateDimension.cpp DataManagement/mitkNodePredicateFunction.cpp DataManagement/mitkNodePredicateGeometry.cpp DataManagement/mitkNodePredicateNot.cpp DataManagement/mitkNodePredicateOr.cpp DataManagement/mitkNodePredicateProperty.cpp DataManagement/mitkNodePredicateDataProperty.cpp DataManagement/mitkNodePredicateSubGeometry.cpp DataManagement/mitkNumericConstants.cpp DataManagement/mitkPlaneGeometry.cpp DataManagement/mitkPlaneGeometryData.cpp DataManagement/mitkPlaneOperation.cpp DataManagement/mitkPlaneOrientationProperty.cpp DataManagement/mitkPointOperation.cpp DataManagement/mitkPointSet.cpp DataManagement/mitkPointSetShapeProperty.cpp DataManagement/mitkProperties.cpp DataManagement/mitkPropertyAliases.cpp DataManagement/mitkPropertyDescriptions.cpp DataManagement/mitkPropertyExtension.cpp DataManagement/mitkPropertyExtensions.cpp DataManagement/mitkPropertyFilter.cpp DataManagement/mitkPropertyFilters.cpp DataManagement/mitkPropertyKeyPath.cpp DataManagement/mitkPropertyList.cpp DataManagement/mitkPropertyListReplacedObserver.cpp DataManagement/mitkPropertyNameHelper.cpp DataManagement/mitkPropertyObserver.cpp DataManagement/mitkPropertyPersistence.cpp DataManagement/mitkPropertyPersistenceInfo.cpp DataManagement/mitkPropertyRelationRuleBase.cpp DataManagement/mitkProportionalTimeGeometry.cpp DataManagement/mitkRenderingModeProperty.cpp DataManagement/mitkResliceMethodProperty.cpp DataManagement/mitkRestorePlanePositionOperation.cpp DataManagement/mitkRotationOperation.cpp DataManagement/mitkScaleOperation.cpp DataManagement/mitkSlicedData.cpp DataManagement/mitkSlicedGeometry3D.cpp DataManagement/mitkSmartPointerProperty.cpp DataManagement/mitkStandaloneDataStorage.cpp DataManagement/mitkStringProperty.cpp DataManagement/mitkSurface.cpp DataManagement/mitkSurfaceOperation.cpp DataManagement/mitkSourceImageRelationRule.cpp DataManagement/mitkThinPlateSplineCurvedGeometry.cpp DataManagement/mitkTimeGeometry.cpp DataManagement/mitkTransferFunction.cpp DataManagement/mitkTransferFunctionInitializer.cpp DataManagement/mitkTransferFunctionProperty.cpp DataManagement/mitkTemporoSpatialStringProperty.cpp DataManagement/mitkUIDManipulator.cpp DataManagement/mitkVector.cpp DataManagement/mitkVectorProperty.cpp DataManagement/mitkVtkInterpolationProperty.cpp DataManagement/mitkVtkRepresentationProperty.cpp DataManagement/mitkVtkResliceInterpolationProperty.cpp DataManagement/mitkVtkScalarModeProperty.cpp DataManagement/mitkWeakPointerProperty.cpp DataManagement/mitkIPropertyRelations.cpp DataManagement/mitkPropertyRelations.cpp Interactions/mitkAction.cpp Interactions/mitkBindDispatcherInteractor.cpp Interactions/mitkDataInteractor.cpp Interactions/mitkDispatcher.cpp Interactions/mitkDisplayActionEventBroadcast.cpp Interactions/mitkDisplayActionEventFunctions.cpp Interactions/mitkDisplayActionEventHandler.cpp Interactions/mitkDisplayActionEventHandlerDesynchronized.cpp Interactions/mitkDisplayActionEventHandlerStd.cpp Interactions/mitkDisplayActionEventHandlerSynchronized.cpp Interactions/mitkDisplayCoordinateOperation.cpp Interactions/mitkEventConfig.cpp Interactions/mitkEventFactory.cpp Interactions/mitkEventRecorder.cpp Interactions/mitkEventStateMachine.cpp Interactions/mitkInteractionEventConst.cpp Interactions/mitkInteractionEvent.cpp Interactions/mitkInteractionEventHandler.cpp Interactions/mitkInteractionEventObserver.cpp Interactions/mitkInteractionKeyEvent.cpp Interactions/mitkInteractionPositionEvent.cpp Interactions/mitkInteractionSchemeSwitcher.cpp Interactions/mitkInternalEvent.cpp Interactions/mitkMouseDoubleClickEvent.cpp Interactions/mitkMouseMoveEvent.cpp Interactions/mitkMousePressEvent.cpp Interactions/mitkMouseReleaseEvent.cpp Interactions/mitkMouseWheelEvent.cpp Interactions/mitkPointSetDataInteractor.cpp Interactions/mitkSinglePointDataInteractor.cpp Interactions/mitkStateMachineAction.cpp Interactions/mitkStateMachineCondition.cpp Interactions/mitkStateMachineContainer.cpp Interactions/mitkStateMachineState.cpp Interactions/mitkStateMachineTransition.cpp Interactions/mitkVtkEventAdapter.cpp Interactions/mitkVtkInteractorStyle.cxx Interactions/mitkXML2EventParser.cpp IO/mitkAbstractFileIO.cpp IO/mitkAbstractFileReader.cpp IO/mitkAbstractFileWriter.cpp IO/mitkCustomMimeType.cpp IO/mitkFileReader.cpp IO/mitkFileReaderRegistry.cpp IO/mitkFileReaderSelector.cpp IO/mitkFileReaderWriterBase.cpp IO/mitkFileWriter.cpp IO/mitkFileWriterRegistry.cpp IO/mitkFileWriterSelector.cpp IO/mitkGeometry3DToXML.cpp IO/mitkIFileIO.cpp IO/mitkIFileReader.cpp IO/mitkIFileWriter.cpp IO/mitkGeometryDataReaderService.cpp IO/mitkGeometryDataWriterService.cpp IO/mitkImageGenerator.cpp IO/mitkImageVtkLegacyIO.cpp IO/mitkImageVtkXmlIO.cpp IO/mitkIMimeTypeProvider.cpp IO/mitkIOConstants.cpp IO/mitkIOMimeTypes.cpp IO/mitkIOUtil.cpp IO/mitkItkImageIO.cpp IO/mitkItkLoggingAdapter.cpp IO/mitkLegacyFileReaderService.cpp IO/mitkLegacyFileWriterService.cpp IO/mitkLocaleSwitch.cpp IO/mitkLogBackend.cpp IO/mitkMimeType.cpp IO/mitkMimeTypeProvider.cpp IO/mitkOperation.cpp IO/mitkPixelType.cpp IO/mitkPointSetReaderService.cpp IO/mitkPointSetWriterService.cpp IO/mitkProportionalTimeGeometryToXML.cpp IO/mitkRawImageFileReader.cpp IO/mitkStandardFileLocations.cpp IO/mitkSurfaceStlIO.cpp IO/mitkSurfaceVtkIO.cpp IO/mitkSurfaceVtkLegacyIO.cpp IO/mitkSurfaceVtkXmlIO.cpp IO/mitkUtf8Util.cpp IO/mitkVtkLoggingAdapter.cpp IO/mitkPreferenceListReaderOptionsFunctor.cpp IO/mitkIOMetaInformationPropertyConstants.cpp IO/mitkIPreferences.cpp IO/mitkPreferences.cpp IO/mitkIPreferencesService.cpp IO/mitkPreferencesService.cpp IO/mitkIPreferencesStorage.cpp IO/mitkXMLPreferencesStorage.cpp Rendering/mitkAbstractAnnotationRenderer.cpp Rendering/mitkAnnotationUtils.cpp Rendering/mitkBaseRenderer.cpp Rendering/mitkBaseRendererHelper.cpp Rendering/mitkCrosshairVtkMapper2D.cpp Rendering/mitkGradientBackground.cpp Rendering/mitkImageVtkMapper2D.cpp Rendering/mitkMapper.cpp Rendering/mitkAnnotation.cpp Rendering/mitkPlaneGeometryDataMapper2D.cpp Rendering/mitkPlaneGeometryDataVtkMapper3D.cpp Rendering/mitkPointSetVtkMapper2D.cpp Rendering/mitkPointSetVtkMapper3D.cpp Rendering/mitkRenderWindowBase.cpp Rendering/mitkRenderWindow.cpp Rendering/mitkRenderWindowFrame.cpp Rendering/mitkSurfaceVtkMapper2D.cpp Rendering/mitkSurfaceVtkMapper3D.cpp Rendering/mitkVideoRecorder.cpp Rendering/mitkVtkEventProvider.cpp Rendering/mitkVtkMapper.cpp Rendering/mitkVtkPropRenderer.cpp Rendering/mitkVtkWidgetRendering.cpp Rendering/vtkMitkLevelWindowFilter.cpp Rendering/vtkMitkRectangleProp.cpp Rendering/vtkMitkRenderProp.cpp Rendering/vtkMitkThickSlicesFilter.cpp Rendering/vtkNeverTranslucentTexture.cpp ) set(RESOURCE_FILES Interactions/globalConfig.xml Interactions/DisplayInteraction.xml Interactions/DisplayConfigMITKBase.xml Interactions/DisplayConfigPACSBase.xml Interactions/DisplayConfigCrosshair.xml Interactions/DisplayConfigRotation.xml Interactions/DisplayConfigActivateCoupling.xml Interactions/DisplayConfigSwivel.xml Interactions/DisplayConfigPACSPan.xml Interactions/DisplayConfigPACSScroll.xml Interactions/DisplayConfigPACSZoom.xml Interactions/DisplayConfigPACSLevelWindow.xml Interactions/DisplayConfigBlockLMB.xml Interactions/PointSet.xml Interactions/PointSetConfig.xml mitkLevelWindowPresets.xml mitkAnatomicalStructureColorPresets.xml ) diff --git a/Modules/Core/include/mitkBaseController.h b/Modules/Core/include/mitkBaseController.h index 41d8307e65..f0b33dc004 100644 --- a/Modules/Core/include/mitkBaseController.h +++ b/Modules/Core/include/mitkBaseController.h @@ -1,77 +1,69 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkBaseController_h #define mitkBaseController_h #include "mitkEventStateMachine.h" #include "mitkOperationActor.h" #include "mitkStepper.h" #include #include namespace mitk { class BaseRenderer; - //##Documentation - //## @brief Baseclass for renderer slice-/camera-control - //## - //## Tells the render (subclass of BaseRenderer) which slice (subclass - //## SliceNavigationController) or from which direction (subclass - //## CameraController) it has to render. Contains two Stepper for stepping - //## through the slices or through different camera views (e.g., for the - //## creation of a movie around the data), respectively, and through time, if - //## there is 3D+t data. - //## @note not yet implemented - //## @ingroup NavigationControl + /** + * \brief Baseclass for renderer slice-/camera-/time-control + * + * Tells the renderer (subclass of BaseRenderer) which slice (SliceNavigationController), + * which direction (CameraController) or which time (TimeNavigationController) it has to render. + * Contains a Stepper for stepping through the slices, through different + * camera views (e.g., for the creation of a movie around the data) + * and through time, if there is 3D+t data. + */ class MITKCORE_EXPORT BaseController : public OperationActor, public itk::Object { public: - /** Standard class typedefs. */ + mitkClassMacroItkParent(BaseController, OperationActor); itkFactorylessNewMacro(Self); - //##Documentation - //## @brief Get the Stepper through the slices - Stepper *GetSlice(); - const Stepper* GetSlice() const; - - //##Documentation - //## @brief Get the Stepper through the time - Stepper *GetTime(); - const Stepper* GetTime() const; + /** + * \brief Get the stepper through the corresponding dimension. + */ + Stepper* GetStepper(); + const Stepper* GetStepper() const; protected: /** * @brief Default Constructor **/ BaseController(); /** * @brief Default Destructor **/ ~BaseController() override; void ExecuteOperation(Operation *) override; - //## @brief Stepper through the time - Stepper::Pointer m_Time; - //## @brief Stepper through the slices - Stepper::Pointer m_Slice; + //## @brief Stepper through the different dimensions + Stepper::Pointer m_Stepper; unsigned long m_LastUpdateTime; }; } // namespace mitk #endif diff --git a/Modules/Core/include/mitkBaseRenderer.h b/Modules/Core/include/mitkBaseRenderer.h index f89e5bac0c..a6ad38fd83 100644 --- a/Modules/Core/include/mitkBaseRenderer.h +++ b/Modules/Core/include/mitkBaseRenderer.h @@ -1,505 +1,506 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkBaseRenderer_h #define mitkBaseRenderer_h #include #include #include #include #include #include #include +#include #include #include #include #include #include #include namespace mitk { class Mapper; class BaseLocalStorageHandler; #pragma GCC visibility push(default) itkEventMacroDeclaration(RendererResetEvent, itk::AnyEvent); #pragma GCC visibility pop /* * \brief Organizes the rendering process * * A BaseRenderer contains a reference to a given vtkRenderWindow * and a corresponding vtkRenderer. * The BaseRenderer defines which mapper should be used (2D / 3D) * and which view direction should be rendered. * * All existing BaseRenderer are stored in a static variable * that can be accessed / modified via the static functions. * VtkPropRenderer is a concrete implementation of a BaseRenderer. */ class MITKCORE_EXPORT BaseRenderer : public itk::Object { public: typedef std::map BaseRendererMapType; static BaseRendererMapType baseRendererMap; /** * \brief Defines which kind of mapper (e.g. 2D or 3D) should be used. */ enum StandardMapperSlot { Standard2D = 1, Standard3D = 2 }; static BaseRenderer* GetInstance(vtkRenderWindow* renderWindow); static void AddInstance(vtkRenderWindow* renderWindow, BaseRenderer* baseRenderer); static void RemoveInstance(vtkRenderWindow* renderWindow); static BaseRenderer* GetByName(const std::string& name); static vtkRenderWindow* GetRenderWindowByName(const std::string& name); /** * \brief Get a map of specific RenderWindows */ static BaseRendererMapType GetSpecificRenderWindows(MapperSlotId mapper); /** * \brief Convenience function: Get a map of all 2D RenderWindows */ static BaseRendererMapType GetAll2DRenderWindows(); /** * \brief Convenience function: Get a map of all 3D RenderWindows */ static BaseRendererMapType GetAll3DRenderWindows(); mitkClassMacroItkParent(BaseRenderer, itk::Object); BaseRenderer(const char* name = nullptr, vtkRenderWindow* renderWindow = nullptr); void RemoveAllLocalStorages(); void RegisterLocalStorageHandler(BaseLocalStorageHandler* lsh); void UnregisterLocalStorageHandler(BaseLocalStorageHandler* lsh); virtual void SetDataStorage(DataStorage* storage); virtual DataStorage::Pointer GetDataStorage() const { return m_DataStorage.GetPointer(); } vtkRenderWindow* GetRenderWindow() const { return m_RenderWindow; } vtkRenderer* GetVtkRenderer() const { return m_VtkRenderer; } /** * \brief Get the dispatcher, which handles events for this base renderer. */ Dispatcher::Pointer GetDispatcher() const; /** * \brief Set a new size for the render window. */ virtual void Resize(int w, int h); /** * \brief Initialize the base renderer with a vtk render window. * Set the new renderer for the camera controller. */ virtual void InitRenderer(vtkRenderWindow* renderwindow); /** * \brief Set the initial size for the render window. */ virtual void InitSize(int w, int h); virtual void DrawOverlayMouse(Point2D&) { MITK_INFO << "BaseRenderer::DrawOverlayMouse() should be in concret implementation OpenGLRenderer." << std::endl; } /** * \brief Set the world time geometry using the given TimeGeometry. * * Setting a new world time geometry updates the current world geometry and the * curent world plane geometry, using the currently selected slice and timestep. */ virtual void SetWorldTimeGeometry(const TimeGeometry* geometry); itkGetConstObjectMacro(WorldTimeGeometry, TimeGeometry); /** * \brief Set the interaction reference world time geometry using the given TimeGeometry. * * Setting a new interaction reference world time geometry also updates the * alignment status of the reference geometry, which can be retrieved using * 'GetReferenceGeometryAligned'. * Using a nullptr as the interaction reference geomertry implies that * no requirements on the geometry exist, thus in this case any check * will result in 'ReferenceGeometryAligned' being true. * * \param geometry The reference geometry used for render window interaction. */ virtual void SetInteractionReferenceGeometry(const TimeGeometry* geometry); /** * \brief Get the current interaction reference geometry. */ itkGetConstObjectMacro(InteractionReferenceGeometry, TimeGeometry); /** * \brief Return if the reference geometry aligns with the base renderer's world geometry. * If true, the interaction reference geometry aligns with the base renderer's * current world geometry. False otherwise. */ itkGetMacro(ReferenceGeometryAligned, bool); /** * \brief Get the current time-extracted 3D-geometry. */ itkGetConstObjectMacro(CurrentWorldGeometry, BaseGeometry); /** * \brief Get the current slice-extracted 2D-geometry. */ itkGetConstObjectMacro(CurrentWorldPlaneGeometry, PlaneGeometry); virtual bool SetWorldGeometryToDataStorageBounds() { return false; } /** * \brief Set the slice that should be used for geometry extraction. * * The slice defines the current slice-extracted 2D-geometry (CurrentWorldPlaneGeometry). * Setting a new slice will update the current world geometry and the * curent world plane geometry. */ virtual void SetSlice(unsigned int slice); itkGetConstMacro(Slice, unsigned int); /** * \brief Set the timestep that should be used for geometry extraction. * * The timestep defines the current time-extracted 3D-geometry (CurrentWorldGeometry). * Setting a new timestep will update the current world geometry and the * curent world plane geometry. */ virtual void SetTimeStep(unsigned int timeStep); itkGetConstMacro(TimeStep, unsigned int); /** * \brief Get the timestep of a BaseData object which * exists at the time of the currently displayed content. * * Returns -1 if there is no data at the current time. */ TimeStepType GetTimeStep(const BaseData* data) const; /** * \brief Get the time in ms of the currently display content (geometry). */ ScalarType GetTime() const; /** * \brief Set the world time geometry using the geometry of the given event. * * The function is triggered by a SliceNavigationController::GeometrySendEvent. */ virtual void SetGeometry(const itk::EventObject& geometrySliceEvent); /** * \brief Set the current world plane geometry using the existing current world geometry. * * The function is triggered by a SliceNavigationController::GeometryUpdateEvent. */ virtual void UpdateGeometry(const itk::EventObject& geometrySliceEvent); /** * \brief Set the current slice using "SetSlice" and update the current world geometry * and the current world plane geometry. * * The function is triggered by a SliceNavigationController::GeometrySliceEvent. */ virtual void SetGeometrySlice(const itk::EventObject& geometrySliceEvent); /** * \brief Set the current time using "SetTimeStep" and update the current world geometry * and the current world plane geometry. * * The function is triggered by a TimeNavigationController::TimeEvent. */ virtual void SetGeometryTime(const itk::EventObject& geometryTimeEvent); itkGetObjectMacro(CurrentWorldPlaneGeometryNode, DataNode); /** * \brief Modify the update time of the current world plane geometry and force reslicing. */ void SendUpdateSlice(); /** * \brief Get timestamp of the update time of the current world plane geometry. */ itkGetMacro(CurrentWorldPlaneGeometryUpdateTime, unsigned long); /** * \brief Get timestamp of the update time of the current timestep. */ itkGetMacro(TimeStepUpdateTime, unsigned long); /** * \brief Pick a world coordinate (x,y,z) given a display coordinate (x,y). * * \warning Not implemented; has to be overwritten in subclasses. */ virtual void PickWorldPoint(const Point2D& diplayPosition, Point3D& worldPosition) const = 0; /** * \brief Determines the object (mitk::DataNode) closest to the current * position by means of picking. * * \warning Implementation currently empty for 2D rendering; intended to be * implemented for 3D renderers. */ virtual DataNode* PickObject(const Point2D& /*displayPosition*/, Point3D& /*worldPosition*/) const { return nullptr; } /** * \brief Get the currently used mapperID. */ itkGetMacro(MapperID, MapperSlotId); itkGetConstMacro(MapperID, MapperSlotId); /** * \brief Set the used mapperID. */ virtual void SetMapperID(MapperSlotId id); virtual int* GetSize() const; virtual int* GetViewportSize() const; void SetSliceNavigationController(SliceNavigationController* SlicenavigationController); itkGetObjectMacro(CameraController, CameraController); itkGetObjectMacro(SliceNavigationController, SliceNavigationController); itkGetObjectMacro(CameraRotationController, CameraRotationController); itkGetMacro(EmptyWorldGeometry, bool); /** * \brief Getter/Setter for defining if the displayed region should be shifted * or rescaled if the render window is resized. */ itkGetMacro(KeepDisplayedRegion, bool); itkSetMacro(KeepDisplayedRegion, bool); /** * \brief Return the name of the base renderer */ const char* GetName() const { return m_Name.c_str(); } /** * \brief Return the size in x-direction of the base renderer. */ int GetSizeX() const { return this->GetSize()[0]; } /** * \brief Return the size in y-direction of the base renderer. */ int GetSizeY() const { return this->GetSize()[1]; } /** * \brief Return the bounds of the bounding box of the * current world geometry (time-extracted 3D-geometry). * * If the geometry is empty, the bounds are set to zero. */ const double* GetBounds() const; void RequestUpdate(); void ForceImmediateUpdate(); /** * \brief Return the number of mappers which are visible and have * level-of-detail rendering enabled. */ unsigned int GetNumberOfVisibleLODEnabledMappers() const; /** * \brief Convert a display point to the 3D world index * using the geometry of the renderWindow. */ void DisplayToWorld(const Point2D& displayPoint, Point3D& worldIndex) const; /** * \brief Convert a display point to the 2D world index, mapped onto the display plane * using the geometry of the renderWindow. */ void DisplayToPlane(const Point2D& displayPoint, Point2D& planePointInMM) const; /** * \brief Convert a 3D world index to the display point * using the geometry of the renderWindow. */ void WorldToDisplay(const Point3D& worldIndex, Point2D& displayPoint) const; /** * \brief Convert a 3D world index to the point on the viewport * using the geometry of the renderWindow. */ void WorldToView(const Point3D& worldIndex, Point2D& viewPoint) const; /** * \brief Convert a 2D plane coordinate to the display point * using the geometry of the renderWindow. */ void PlaneToDisplay(const Point2D& planePointInMM, Point2D& displayPoint) const; /** * \brief Convert a 2D plane coordinate to the point on the viewport * using the geometry of the renderWindow. */ void PlaneToView(const Point2D& planePointInMM, Point2D& viewPoint) const; double GetScaleFactorMMPerDisplayUnit() const; Point2D GetDisplaySizeInMM() const; Point2D GetViewportSizeInMM() const; Point2D GetOriginInMM() const; itkGetConstMacro(ConstrainZoomingAndPanning, bool) virtual void SetConstrainZoomingAndPanning(bool constrain); protected: ~BaseRenderer() override; virtual void Update() = 0; vtkRenderWindow* m_RenderWindow; vtkRenderer* m_VtkRenderer; MapperSlotId m_MapperID; DataStorage::Pointer m_DataStorage; unsigned long m_LastUpdateTime; CameraController::Pointer m_CameraController; CameraRotationController::Pointer m_CameraRotationController; SliceNavigationController::Pointer m_SliceNavigationController; void UpdateCurrentGeometries(); virtual void SetCurrentWorldPlaneGeometry(const PlaneGeometry* geometry2d); virtual void SetCurrentWorldGeometry(const BaseGeometry *geometry); private: /** * \brief Pointer to the current TimeGeometry. * * This WorldTimeGeometry is used to extract a SlicedGeometry3D, * using the current timestep (set via SetTimeStep). * The time-extracted 3D-geometry is used as the "CurrentWorldGeometry". * A PlaneGeometry can further be extracted using the current slice (set via SetSlice). * The slice-extracted 2D-geometry is used as the "CurrentWorldPlaneGeometry". */ TimeGeometry::ConstPointer m_WorldTimeGeometry; /** * \brief Pointer to the interaction reference geometry used for interaction. * * This InteractionReferenceGeometry is used to decide if a base renderer / * render window is able to correctly handle display interaction, e.g. drawing. * It will be set using the "SetInteractionReferenceGeometry"-function. */ TimeGeometry::ConstPointer m_InteractionReferenceGeometry; /** * \brief Pointer to the current time-extracted 3D-geometry. * * This CurrentWorldGeometry is used to define the bounds for this * BaseRenderer. * It will be set using the "SetCurrentWorldGeometry"-function. */ BaseGeometry::ConstPointer m_CurrentWorldGeometry; /** * \brief Pointer to the current slice-extracted 2D-geometry. * * This CurrentWorldPlaneGeometry is used to define the maximal * area (2D manifold) to be rendered in case we are doing 2D-rendering. * It will be set using the "SetCurrentWorldPlaneGeometry"-function. */ PlaneGeometry::Pointer m_CurrentWorldPlaneGeometry; unsigned int m_Slice; unsigned int m_TimeStep; itk::TimeStamp m_CurrentWorldPlaneGeometryUpdateTime; itk::TimeStamp m_TimeStepUpdateTime; BindDispatcherInteractor* m_BindDispatcherInteractor; bool m_KeepDisplayedRegion; bool m_ReferenceGeometryAligned; protected: void PrintSelf(std::ostream& os, itk::Indent indent) const override; PlaneGeometryData::Pointer m_CurrentWorldPlaneGeometryData; DataNode::Pointer m_CurrentWorldPlaneGeometryNode; unsigned long m_CurrentWorldPlaneGeometryTransformTime; std::string m_Name; double m_Bounds[6]; bool m_EmptyWorldGeometry; typedef std::set LODEnabledMappersType; unsigned int m_NumberOfVisibleLODEnabledMappers; std::list m_RegisteredLocalStorageHandlers; bool m_ConstrainZoomingAndPanning; }; } // namespace mitk #endif diff --git a/Modules/Core/include/mitkRenderingManager.h b/Modules/Core/include/mitkRenderingManager.h index 405f45116d..5dab86b41a 100644 --- a/Modules/Core/include/mitkRenderingManager.h +++ b/Modules/Core/include/mitkRenderingManager.h @@ -1,503 +1,503 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkRenderingManager_h #define mitkRenderingManager_h #include #include #include #include #include #include #include #include class vtkRenderWindow; class vtkObject; namespace mitk { class RenderingManagerFactory; class BaseGeometry; - class SliceNavigationController; + class TimeNavigationController; class BaseRenderer; class DataStorage; /** * \brief Manager for coordinating the rendering process. * * RenderingManager is a central instance retrieving and executing * RenderWindow update requests. Its main purpose is to coordinate * distributed requests which cannot be aware of each other - lacking the * knowledge of whether they are really necessary or not. For example, two * objects might determine that a specific RenderWindow needs to be updated. * This would result in one unnecessary update, if both executed the update * on their own. * * The RenderingManager addresses this by letting each such object * request an update, and waiting for other objects to possibly * issue the same request. The actual update will then only be executed at a * well-defined point in the main event loop (this may be each time after * event processing is done). * * Convenience methods for updating all RenderWindows which have been * registered with the RenderingManager exist. If these methods are not * used, it is not required to register (add) RenderWindows prior to using * the RenderingManager. * * The methods #ForceImmediateUpdate() and #ForceImmediateUpdateAll() can * be used to force the RenderWindow update execution without any delay, * bypassing the request functionality. * * The interface of RenderingManager is platform independent. Platform * specific subclasses have to be implemented, though, to supply an * appropriate event issuing for controlling the update execution process. * See method documentation for a description of how this can be done. * * \sa TestingRenderingManager An "empty" RenderingManager implementation which * can be used in tests etc. * */ class MITKCORE_EXPORT RenderingManager : public itk::Object { public: mitkClassMacroItkParent(RenderingManager, itk::Object); typedef std::vector RenderWindowVector; typedef std::vector FloatVector; typedef std::vector BoolVector; typedef itk::SmartPointer DataStoragePointer; enum RequestType { REQUEST_UPDATE_ALL = 0, REQUEST_UPDATE_2DWINDOWS, REQUEST_UPDATE_3DWINDOWS }; static Pointer New(); /** Set the object factory which produces the desired platform specific * RenderingManager singleton instance. */ static void SetFactory(RenderingManagerFactory *factory); /** Get the object factory which produces the platform specific * RenderingManager instances. */ static const RenderingManagerFactory *GetFactory(); /** Returns true if a factory has already been set. */ static bool HasFactory(); /** Get the RenderingManager singleton instance. */ static RenderingManager *GetInstance(); /** Returns true if the singleton instance does already exist. */ static bool IsInstantiated(); /** Adds a RenderWindow. This is required if the methods #RequestUpdateAll * or #ForceImmediateUpdate are to be used. */ void AddRenderWindow(vtkRenderWindow *renderWindow); /** Removes a RenderWindow. */ void RemoveRenderWindow(vtkRenderWindow *renderWindow); /** Get a list of all registered RenderWindows */ const RenderWindowVector &GetAllRegisteredRenderWindows(); /** Requests an update for the specified RenderWindow, to be executed as * soon as the main loop is ready for rendering. */ void RequestUpdate(vtkRenderWindow *renderWindow); /** Immediately executes an update of the specified RenderWindow. */ void ForceImmediateUpdate(vtkRenderWindow *renderWindow); /** Requests all currently registered RenderWindows to be updated. * If only 2D or 3D windows should be updated, this can be specified * via the parameter requestType. */ void RequestUpdateAll(RequestType type = REQUEST_UPDATE_ALL); /** Immediately executes an update of all registered RenderWindows. * If only 2D or 3D windows should be updated, this can be specified * via the parameter requestType. */ void ForceImmediateUpdateAll(RequestType type = REQUEST_UPDATE_ALL); /** * @brief Initialize the render windows by the aggregated geometry of all objects that are held in * the data storage. * * @param dataStorage The data storage from which the bounding object can be retrieved */ virtual void InitializeViewsByBoundingObjects(const DataStorage* dataStorage); /** * @brief Initialize the given render window by the aggregated geometry of all objects that are held in * the data storage. * * @param renderWindow The specifid render window to update * @param dataStorage The data storage from which the bounding object can be retrieved * @param resetCamera If this parameter is set to true, the camera controller will be * set / fit to the center of the rendered image. If set to false, only the * the slice navigation controller is reset to the geometry without changing * the camera view / position. */ virtual void InitializeViewByBoundingObjects(vtkRenderWindow* renderWindow, const DataStorage* dataStorage, bool resetCamera = true); /** * @brief Initialize the render windows specified by "type" to the given geometry. * * Throws an exception if bounding box has 0 extent due to exceeding double precision range. * * @param geometry The geometry to be used to initialize / update a * render window's time and slice navigation controller * @param type The type of update request: * - REQUEST_UPDATE_ALL will initialize / update the * time and slice navigation controller of all retrieved render windows * - REQUEST_UPDATE_2DWINDOWS will only initialize / update the * time and slice navigation controller of 2D render windows * - REQUEST_UPDATE_3DWINDOWS will only initialize / update the * time and slice navigation controller of 3D render windows * @param resetCamera If this parameter is set to true, the camera controller will be * set / fit to the center of the rendered image. If set to false, only the * the slice navigation controller is reset to the geometry without changing * the camera view / position. */ virtual bool InitializeViews(const BaseGeometry *geometry, RequestType type = REQUEST_UPDATE_ALL, bool resetCamera = true); /** * @brief Initialize the render windows specified by "type" to the given geometry. * * Throws an exception if bounding box has 0 extent due to exceeding double precision range. * * @param geometry The geometry to be used to initialize / update a * render window's time- and slice navigation controller * @param type The type of update request: * - REQUEST_UPDATE_ALL will initialize / update the * time- and slice navigation controller of all retrieved render windows * - REQUEST_UPDATE_2DWINDOWS will only initialize / update the * time- and slice navigation controller of 2D render windows * - REQUEST_UPDATE_3DWINDOWS will only initialize / update the * time- and slice navigation controller of 3D render windows * @param resetCamera If this parameter is set to true, the camera controller will be * set / fit to the center of the rendered image. If set to false, only the * the slice navigation controller is reset to the geometry without changing * the camera view / position. */ virtual bool InitializeViews(const TimeGeometry *geometry, RequestType type = REQUEST_UPDATE_ALL, bool resetCamera = true); /** * @brief Initialize the render windows specified by "type" to the default viewing direction * without updating the geometry information. * * @param type The type of update request: * - REQUEST_UPDATE_ALL will initialize the * slice navigation controller of all retrieved render windows * - REQUEST_UPDATE_2DWINDOWS will only initialize the * slice navigation controller of 2D render windows * - REQUEST_UPDATE_3DWINDOWS will only initialize the * slice navigation controller of 3D render windows */ virtual bool InitializeViews(RequestType type = REQUEST_UPDATE_ALL); /** * @brief Initialize the specified render window to the given geometry. * * Throws an exception if bounding box has 0 extent due to exceeding double precision range. * * @param renderWindow The specific render window to update * @param geometry The geometry to be used to initialize / update the * render window's time- and slice navigation controller * @param resetCamera If this parameter is set to true, the camera controller will be * set / fit to the center of the rendered image. If set to false, only the * the slice navigation controller is reset to the geometry without changing * the camera view / position. */ virtual bool InitializeView(vtkRenderWindow *renderWindow, const BaseGeometry *geometry, bool resetCamera = true); /** * @brief Initialize the specified render window to the given geometry. * * Throws an exception if bounding box has 0 extent due to exceeding double precision range. * * @param renderWindow The specific render window to update * @param geometry The geometry to be used to initialize / update the * render window's time- and slice navigation controller * @param resetCamera If this parameter is set to true, the camera controller will be * set / fit to the center of the rendered image. If set to false, only the * the slice navigation controller is reset to the geometry without changing * the camera view / position. */ virtual bool InitializeView(vtkRenderWindow *renderWindow, const TimeGeometry *geometry, bool resetCamera = true); /** * @brief Initialize the specified render window to the default viewing direction * without updating the geometry information. * * @param renderWindow The specific render window to update */ virtual bool InitializeView(vtkRenderWindow *renderWindow); - /** Gets the (global) SliceNavigationController responsible for + /** Gets the (global) TimeNavigationController responsible for * time-slicing. */ - const SliceNavigationController *GetTimeNavigationController() const; + const TimeNavigationController* GetTimeNavigationController() const; - /** Gets the (global) SliceNavigationController responsible for + /** Gets the (global) TimeNavigationController responsible for * time-slicing. */ - SliceNavigationController *GetTimeNavigationController(); + TimeNavigationController* GetTimeNavigationController(); ~RenderingManager() override; /** Executes all pending requests. This method has to be called by the * system whenever a RenderingManager induced request event occurs in * the system pipeline (see concrete RenderingManager implementations). */ virtual void ExecutePendingRequests(); bool IsRendering() const; void AbortRendering(); /** En-/Disable LOD increase globally. */ itkSetMacro(LODIncreaseBlocked, bool); /** En-/Disable LOD increase globally. */ itkGetMacro(LODIncreaseBlocked, bool); /** En-/Disable LOD increase globally. */ itkBooleanMacro(LODIncreaseBlocked); /** En-/Disable LOD abort mechanism. */ itkSetMacro(LODAbortMechanismEnabled, bool); /** En-/Disable LOD abort mechanism. */ itkGetMacro(LODAbortMechanismEnabled, bool); /** En-/Disable LOD abort mechanism. */ itkBooleanMacro(LODAbortMechanismEnabled); /** Force a sub-class to start a timer for a pending hires-rendering request */ virtual void StartOrResetTimer(){}; /** To be called by a sub-class from a timer callback */ void ExecutePendingHighResRenderingRequest(); virtual void DoStartRendering(){}; virtual void DoMonitorRendering(){}; virtual void DoFinishAbortRendering(){}; int GetNextLOD(BaseRenderer *renderer); /** Set current LOD (nullptr means all renderers)*/ void SetMaximumLOD(unsigned int max); void SetShading(bool state, unsigned int lod); bool GetShading(unsigned int lod); void SetClippingPlaneStatus(bool status); bool GetClippingPlaneStatus(); void SetShadingValues(float ambient, float diffuse, float specular, float specpower); FloatVector &GetShadingValues(); /** Returns a property list */ PropertyList::Pointer GetPropertyList() const; /** Returns a property from m_PropertyList */ BaseProperty *GetProperty(const char *propertyKey) const; /** Sets or adds (if not present) a property in m_PropertyList */ void SetProperty(const char *propertyKey, BaseProperty *propertyValue); /** * \brief Setter for internal DataStorage * * Sets the DataStorage that is used internally. This instance holds all DataNodes that are * rendered by the registered BaseRenderers. * * If this DataStorage is changed at runtime by calling SetDataStorage(), * all currently registered BaseRenderers are automatically given the correct instance. * When a new BaseRenderer is added, it is automatically initialized with the currently active DataStorage. */ void SetDataStorage(DataStorage *storage); /** * \brief Getter for internal DataStorage * * Returns the DataStorage that is used internally. This instance holds all DataNodes that are * rendered by the registered BaseRenderers. */ itkGetMacro(DataStorage, DataStorage*); itkGetConstMacro(DataStorage, DataStorage*); /** * @brief Sets a flag to the given renderwindow to indicated that it has the focus e.g. has been clicked recently. * @param focusWindow */ void SetRenderWindowFocus(vtkRenderWindow *focusWindow); itkGetMacro(FocusedRenderWindow, vtkRenderWindow *); itkSetMacro(ConstrainedPanningZooming, bool); itkGetConstMacro(ConstrainedPanningZooming, bool); void SetAntiAliasing(AntiAliasing antiAliasing); itkGetConstMacro(AntiAliasing, AntiAliasing); protected: enum { RENDERING_INACTIVE = 0, RENDERING_REQUESTED, RENDERING_INPROGRESS }; RenderingManager(); /** Abstract method for generating a system specific event for rendering * request. This method is called whenever an update is requested */ virtual void GenerateRenderingRequestEvent() = 0; virtual void InitializePropertyList(); bool m_UpdatePending; typedef std::map RendererIntMap; typedef std::map RendererBoolMap; RendererBoolMap m_RenderingAbortedMap; RendererIntMap m_NextLODMap; unsigned int m_MaxLOD; bool m_LODIncreaseBlocked; bool m_LODAbortMechanismEnabled; BoolVector m_ShadingEnabled; bool m_ClippingPlaneEnabled; FloatVector m_ShadingValues; static void RenderingStartCallback(vtkObject *caller, unsigned long eid, void *clientdata, void *calldata); static void RenderingProgressCallback(vtkObject *caller, unsigned long eid, void *clientdata, void *calldata); static void RenderingEndCallback(vtkObject *caller, unsigned long eid, void *clientdata, void *calldata); typedef std::map RenderWindowList; RenderWindowList m_RenderWindowList; RenderWindowVector m_AllRenderWindows; struct RenderWindowCallbacks { vtkCallbackCommand *commands[3u]; }; typedef std::map RenderWindowCallbacksList; RenderWindowCallbacksList m_RenderWindowCallbacksList; - itk::SmartPointer m_TimeNavigationController; + itk::SmartPointer m_TimeNavigationController; static RenderingManager::Pointer s_Instance; static RenderingManagerFactory *s_RenderingManagerFactory; PropertyList::Pointer m_PropertyList; DataStoragePointer m_DataStorage; bool m_ConstrainedPanningZooming; private: /** * @brief Initialize the specified renderer to the given geometry. * * @param baseRenderer The specific renderer to update * @param geometry The geometry to be used to initialize / update the * render window's slice navigation controller * @param boundingBoxInitialized If this parameter is set to true, the slice navigation controller will be * initialized / updated with the given geometry. If set to false, the geometry * of the slice navigation controller is not updated. * @param mapperID The mapper ID is used to define if the given renderer is a 2D or a 3D renderer. * In case of a 2D renderer and if "boundingBoxInitialized" is set to true (slice * navigation controller will be updated with a new geometry), the position of the * slice navigation controller is set to the center slice. * @param resetCamera If this parameter is set to true, the camera controller will be * set / fit to the center of the rendered image. If set to false, only the * the slice navigation controller is reset to the geometry without changing * the camera view / position. */ void InternalViewInitialization(BaseRenderer *baseRenderer, const TimeGeometry *geometry, bool boundingBoxInitialized, int mapperID, bool resetCamera); /** * @brief Extend the bounding box of the given geometry to make sure the bounding box has an extent bigger than * zero in any direction. * * @param originalGeometry The original geometry to be extended * @param modifiedGeometry The modified geometry where the new bounds (extended bounding box) are used / set */ bool ExtendGeometryForBoundingBox(const TimeGeometry* originalGeometry, TimeGeometry::Pointer& modifiedGeometry); vtkRenderWindow *m_FocusedRenderWindow; AntiAliasing m_AntiAliasing; }; #pragma GCC visibility push(default) itkEventMacroDeclaration(RenderingManagerEvent, itk::AnyEvent); itkEventMacroDeclaration(RenderingManagerViewsInitializedEvent, RenderingManagerEvent); #pragma GCC visibility pop itkEventMacroDeclaration(FocusChangedEvent, itk::AnyEvent); /** * Generic RenderingManager implementation for "non-rendering-platform", * e.g. for tests. Its factory (TestingRenderingManagerFactory) is * automatically on start-up and is used by default if not other * RenderingManagerFactory is instantiated explicitly thereafter. * (see mitkRenderingManager.cpp) */ class MITKCORE_EXPORT TestingRenderingManager : public RenderingManager { public: mitkClassMacro(TestingRenderingManager, RenderingManager); itkFactorylessNewMacro(Self); itkCloneMacro(Self); protected: void GenerateRenderingRequestEvent() override {}; }; } // namespace mitk #endif diff --git a/Modules/Core/include/mitkSliceNavigationController.h b/Modules/Core/include/mitkSliceNavigationController.h index 8e58f634d1..a91ad8dc14 100644 --- a/Modules/Core/include/mitkSliceNavigationController.h +++ b/Modules/Core/include/mitkSliceNavigationController.h @@ -1,426 +1,371 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkSliceNavigationController_h #define mitkSliceNavigationController_h #include #include #include #include #include -#include #include #pragma GCC visibility push(default) #include #pragma GCC visibility pop #include namespace mitk { #define mitkTimeGeometryEventMacro(classname, super) \ class MITKCORE_EXPORT classname : public super \ { \ public: \ typedef classname Self; \ typedef super Superclass; \ classname(TimeGeometry *aTimeGeometry, unsigned int aPos) : Superclass(aTimeGeometry, aPos) {} \ virtual ~classname() {} \ virtual const char *GetEventName() const { return #classname; } \ virtual bool CheckEvent(const ::itk::EventObject *e) const { return dynamic_cast(e); } \ virtual ::itk::EventObject *MakeObject() const { return new Self(GetTimeGeometry(), GetPos()); } \ private: \ void operator=(const Self &); \ } class PlaneGeometry; class BaseGeometry; class BaseRenderer; /** * \brief Controls the selection of the slice the associated BaseRenderer * will display * - * A SliceNavigationController takes a BaseGeometry or a TimeGeometry as input world geometry - * (TODO what are the exact requirements?) and generates a TimeGeometry - * as output. The TimeGeometry holds a number of SlicedGeometry3Ds and + * A SliceNavigationController takes a TimeGeometry as input world time geometry + * and generates a different TimeGeometry as output, depending on the current + * view direction and the current time step. + * The TimeGeometry holds a number of SlicedGeometry3Ds and * these in turn hold a series of PlaneGeometries. One of these PlaneGeometries is * selected as world geometry for the BaseRenderers associated to 2D views. * - * The SliceNavigationController holds has Steppers (one for the slice, a - * second for the time step), which control the selection of a single - * PlaneGeometry from the TimeGeometry. SliceNavigationController generates - * ITK events to tell observers, like a BaseRenderer, when the selected slice - * or timestep changes. + * The SliceNavigationController holds a Stepper, which controls the + * slice-selection of a single PlaneGeometry from the TimeGeometry. + * SliceNavigationController generates ITK events to tell observers, + * like a BaseRenderer, when the selected slice changes. * * Example: * \code * // Initialization * sliceCtrl = mitk::SliceNavigationController::New(); * * // Tell the navigation controller the geometry to be sliced * // (with geometry a BaseGeometry::ConstPointer) * sliceCtrl->SetInputWorldTimeGeometry(geometry.GetPointer()); * * // Tell the navigation controller in which direction it shall slice the data * sliceCtrl->SetViewDirection(mitk::AnatomicalPlane::Axial); * * // Connect one or more BaseRenderer to this navigation controller, i.e.: * // events sent by the navigation controller when stepping through the slices - * // (e.g. by sliceCtrl->GetSlice()->Next()) will be received by the BaseRenderer - * // (in this example only slice-changes, see also ConnectGeometryTimeEvent - * // and ConnectGeometryEvents.) + * // (e.g. by sliceCtrl->GetStepper()->Next()) will be received by the BaseRenderer + * // (in this example only slice-changes, see also ConnectGeometryEvents.) * sliceCtrl->ConnectGeometrySliceEvent(renderer.GetPointer()); * * //create a world geometry and send the information to the connected renderer(s) * sliceCtrl->Update(); * \endcode * * * You can connect visible navigation widgets to a SliceNavigationController, e.g., a * QmitkSliceNavigationWidget (for Qt): * * \code * // Create the visible navigation widget (a slider with a spin-box) * QmitkSliceNavigationWidget* navigationWidget = * new QmitkSliceNavigationWidget(parent); * * // Connect the navigation widget to the slice-stepper of the - * // SliceNavigationController. For initialization (position, mininal and + * // SliceNavigationController. For initialization (position, minimal and * // maximal values) the values of the SliceNavigationController are used. * // Thus, accessing methods of a navigation widget is normally not necessary, * // since everything can be set via the (Qt-independent) SliceNavigationController. * // The QmitkStepperAdapter converts the Qt-signals to Qt-independent * // itk-events. - * new QmitkStepperAdapter(navigationWidget, sliceCtrl->GetSlice()); + * new QmitkStepperAdapter(navigationWidget, sliceCtrl->GetStepper()); * \endcode * * If you do not want that all renderwindows are updated when a new slice is * selected, you can use a specific RenderingManager, which updates only those * renderwindows that should be updated. This is sometimes useful when a 3D view * does not need to be updated when the slices in some 2D views are changed. * * \code * // create a specific RenderingManager * mitk::RenderingManager::Pointer myManager = mitk::RenderingManager::New(); * * // tell the RenderingManager to update only renderwindow1 and renderwindow2 * myManager->AddRenderWindow(renderwindow1); * myManager->AddRenderWindow(renderwindow2); * * // tell the SliceNavigationController of renderwindow1 and renderwindow2 * // to use the specific RenderingManager instead of the global one * renderwindow1->GetSliceNavigationController()->SetRenderingManager(myManager); * renderwindow2->GetSliceNavigationController()->SetRenderingManager(myManager); * \endcode * * \todo implement for non-evenly-timed geometry! * \ingroup NavigationControl */ class MITKCORE_EXPORT SliceNavigationController : public BaseController { public: mitkClassMacro(SliceNavigationController, BaseController); itkNewMacro(Self); /** * \brief Set the input world time geometry out of which the * geometries for slicing will be created. * - * Any previous previous set input geometry (3D or Time) will - * be ignored in future. + * Any previous set input geometry (3D or Time) will + * be ignored in the future. */ void SetInputWorldTimeGeometry(const TimeGeometry* geometry); itkGetConstObjectMacro(InputWorldTimeGeometry, TimeGeometry); /** * \brief Access the created geometry */ itkGetConstObjectMacro(CreatedWorldGeometry, TimeGeometry); itkGetObjectMacro(CreatedWorldGeometry, TimeGeometry); /** * \brief Set the desired view directions * * \sa ViewDirection * \sa Update(AnatomicalPlane viewDirection, bool top = true, * bool frontside = true, bool rotated = false) */ itkSetEnumMacro(ViewDirection, AnatomicalPlane); itkGetEnumMacro(ViewDirection, AnatomicalPlane); /** * \brief Set the default view direction * * This is used to re-initialize the view direction of the SNC to the * default value with SetViewDirectionToDefault() * * \sa ViewDirection * \sa Update(AnatomicalPlane viewDirection, bool top = true, * bool frontside = true, bool rotated = false) */ itkSetEnumMacro(DefaultViewDirection, AnatomicalPlane); itkGetEnumMacro(DefaultViewDirection, AnatomicalPlane); const char *GetViewDirectionAsString() const; virtual void SetViewDirectionToDefault(); /** * \brief Do the actual creation and send it to the connected * observers (renderers) * */ virtual void Update(); /** * \brief Extended version of Update, additionally allowing to * specify the direction/orientation of the created geometry. * */ virtual void Update(AnatomicalPlane viewDirection, bool top = true, bool frontside = true, bool rotated = false); /** * \brief Send the created geometry to the connected * observers (renderers) * * Called by Update(). */ virtual void SendCreatedWorldGeometry(); /** * \brief Tell observers to re-read the currently selected 2D geometry * */ virtual void SendCreatedWorldGeometryUpdate(); /** * \brief Send the currently selected slice to the connected * observers (renderers) * * Called by Update(). */ virtual void SendSlice(); - /** - * \brief Send the currently selected time to the connected - * observers (renderers) - * - * Called by Update(). - */ - virtual void SendTime(); - class MITKCORE_EXPORT TimeGeometryEvent : public itk::AnyEvent { public: typedef TimeGeometryEvent Self; typedef itk::AnyEvent Superclass; TimeGeometryEvent(TimeGeometry* aTimeGeometry, unsigned int aPos) : m_TimeGeometry(aTimeGeometry), m_Pos(aPos) {} ~TimeGeometryEvent() override {} const char* GetEventName() const override { return "TimeGeometryEvent"; } bool CheckEvent(const ::itk::EventObject* e) const override { return dynamic_cast(e); } ::itk::EventObject* MakeObject() const override { return new Self(m_TimeGeometry, m_Pos); } TimeGeometry* GetTimeGeometry() const { return m_TimeGeometry; } unsigned int GetPos() const { return m_Pos; } private: TimeGeometry::Pointer m_TimeGeometry; unsigned int m_Pos; // TimeGeometryEvent(const Self&); void operator=(const Self&); // just hide }; mitkTimeGeometryEventMacro(GeometrySendEvent, TimeGeometryEvent); mitkTimeGeometryEventMacro(GeometryUpdateEvent, TimeGeometryEvent); - mitkTimeGeometryEventMacro(GeometryTimeEvent, TimeGeometryEvent); mitkTimeGeometryEventMacro(GeometrySliceEvent, TimeGeometryEvent); template void ConnectGeometrySendEvent(T* receiver) { auto eventReceptorCommand = itk::ReceptorMemberCommand::New(); eventReceptorCommand->SetCallbackFunction(receiver, &T::SetGeometry); unsigned long tag = AddObserver(GeometrySendEvent(nullptr, 0), eventReceptorCommand); m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); } template void ConnectGeometryUpdateEvent(T* receiver) { auto eventReceptorCommand = itk::ReceptorMemberCommand::New(); eventReceptorCommand->SetCallbackFunction(receiver, &T::UpdateGeometry); unsigned long tag = AddObserver(GeometryUpdateEvent(nullptr, 0), eventReceptorCommand); m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); } template void ConnectGeometrySliceEvent(T* receiver) { auto eventReceptorCommand = itk::ReceptorMemberCommand::New(); eventReceptorCommand->SetCallbackFunction(receiver, &T::SetGeometrySlice); unsigned long tag = AddObserver(GeometrySliceEvent(nullptr, 0), eventReceptorCommand); m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); } - template - void ConnectGeometryTimeEvent(T* receiver) - { - auto eventReceptorCommand = itk::ReceptorMemberCommand::New(); - eventReceptorCommand->SetCallbackFunction(receiver, &T::SetGeometryTime); - unsigned long tag = AddObserver(GeometryTimeEvent(nullptr, 0), eventReceptorCommand); - m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); - } - - template - void ConnectGeometryEvents(T* receiver) - { - // connect sendEvent only once - ConnectGeometrySliceEvent(receiver, false); - ConnectGeometryTimeEvent(receiver); - } - // use a templated method to get the right offset when casting to void* template void Disconnect(T* receiver) { auto i = m_ReceiverToObserverTagsMap.find(static_cast(receiver)); if (i == m_ReceiverToObserverTagsMap.end()) return; const std::list& tags = i->second; for (auto tagIter = tags.begin(); tagIter != tags.end(); ++tagIter) { RemoveObserver(*tagIter); } m_ReceiverToObserverTagsMap.erase(i); } Message1 SetCrosshairEvent; - /** - * \brief To connect multiple SliceNavigationController, we can - * act as an observer ourselves: implemented interface - * \warning not implemented - */ - virtual void SetGeometry(const itk::EventObject& geometrySliceEvent); - - /** - * \brief To connect multiple SliceNavigationController, we can - * act as an observer ourselves: implemented interface - */ - virtual void SetGeometrySlice(const itk::EventObject& geometrySliceEvent); - - /** - * \brief To connect multiple SliceNavigationController, we can - * act as an observer ourselves: implemented interface - */ - virtual void SetGeometryTime(const itk::EventObject& geometryTimeEvent); - /** \brief Positions the SNC according to the specified point */ void SelectSliceByPoint(const Point3D& point); /** \brief Returns the BaseGeometry of the currently selected time step. */ const BaseGeometry* GetCurrentGeometry3D(); /** \brief Returns the currently selected Plane in the current * BaseGeometry (if existent). */ const PlaneGeometry* GetCurrentPlaneGeometry(); /** \brief Sets / gets the BaseRenderer associated with this SNC (if any). * While the BaseRenderer is not directly used by SNC, this is a convenience * method to enable BaseRenderer access via the SNC. */ itkSetObjectMacro(Renderer, BaseRenderer); itkGetMacro(Renderer, BaseRenderer*); /** \brief Re-orients the slice stack. All slices will be oriented to the given normal vector. The given point (world coordinates) defines the selected slice. Careful: The resulting axis vectors are not clearly defined this way. If you want to define them clearly, use ReorientSlices (const Point3D &point, const Vector3D &axisVec0, const Vector3D &axisVec1). */ void ReorientSlices(const Point3D& point, const Vector3D& normal); /** \brief Re-orients the slice stack so that all planes are oriented according to the * given axis vectors. The given Point eventually defines selected slice. */ void ReorientSlices(const Point3D& point, const Vector3D& axisVec0, const Vector3D& axisVec1); void ExecuteOperation(Operation* operation) override; /** * \brief Feature option to lock planes during mouse interaction. * This option flag disables the mouse event which causes the center * cross to move near by. */ itkSetMacro(SliceLocked, bool); itkGetMacro(SliceLocked, bool); itkBooleanMacro(SliceLocked); /** * \brief Feature option to lock slice rotation. * * This option flag disables separately the rotation of a slice which is * implemented in mitkSliceRotator. */ itkSetMacro(SliceRotationLocked, bool); itkGetMacro(SliceRotationLocked, bool); itkBooleanMacro(SliceRotationLocked); /** * \brief Adjusts the numerical range of the slice stepper according to * the current geometry orientation of this SNC's SlicedGeometry. */ void AdjustSliceStepperRange(); - /** \brief Convenience method that returns the time step currently selected by the controller.*/ - TimeStepType GetSelectedTimeStep() const; - - /** \brief Convenience method that returns the time point that corresponds to the selected - * time step. The conversion is done using the time geometry of the SliceNavigationController. - * If the time geometry is not yet set, this function will always return 0.0.*/ - TimePointType GetSelectedTimePoint() const; - protected: SliceNavigationController(); ~SliceNavigationController() override; void CreateWorldGeometry(bool top, bool frontside, bool rotated); TimeGeometry::ConstPointer m_InputWorldTimeGeometry; TimeGeometry::Pointer m_CreatedWorldGeometry; AnatomicalPlane m_ViewDirection; AnatomicalPlane m_DefaultViewDirection; RenderingManager::Pointer m_RenderingManager; BaseRenderer* m_Renderer; bool m_BlockUpdate; bool m_SliceLocked; bool m_SliceRotationLocked; typedef std::map> ObserverTagsMapType; ObserverTagsMapType m_ReceiverToObserverTagsMap; }; } // namespace mitk #endif diff --git a/Modules/Core/include/mitkTimeNavigationController.h b/Modules/Core/include/mitkTimeNavigationController.h new file mode 100644 index 0000000000..16128e2106 --- /dev/null +++ b/Modules/Core/include/mitkTimeNavigationController.h @@ -0,0 +1,172 @@ +/*============================================================================ + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center (DKFZ) +All rights reserved. + +Use of this source code is governed by a 3-clause BSD license that can be +found in the LICENSE file. + +============================================================================*/ + +#ifndef TimeNavigationController_h +#define TimeNavigationController_h + +#include + +#include +#include + +#include + +namespace mitk +{ + /** + * \brief Controls the time-related properties of the time stepper, according to the + * given input world time geomtry. + * + * A TimeNavigationController takes a TimeGeometry as input world time geometry + * and sets the properties of the associated stepper (BaseController). + * The time-related properties are: + * - steps: the number of input time steps + * - pos: the current time step / position of the stepper + * - range: the time bounds for the slider (minimum, maximum) + * + * The timestep controls the selection of a specific time point from the TimeGeometry. + * The TimeNavigationController generates ITK events to tell observers, + * like a BaseRenderer, when the selected timestep changes. + * + * Example: + * \code + * // Initialize the time navigation controller. + * timeCtrl = mitk::TimeNavigationController::New(); + * + * // Set the required input world time geomtry (a TimeGeometry::ConstPointer). + * timeCtrl->SetInputWorldTimeGeometry(geometry.GetPointer()); + * + * // Set the time-related properties and send the information to the connected renderer(s). + * timeCtrl->Update(); + * \endcode + * + * Vvisible navigation widgets can be connected to a TimeNavigationController, e.g., a + * QmitkSliceNavigationWidget (for Qt): + * + * \code + * // Create the visible navigation widget (a slider with a spin-box). + * QmitkSliceNavigationWidget* navigationWidget = new QmitkSliceNavigationWidget(parent); + * + * // Connect the navigation widget to the time-stepper of the + * // TimeNavigationController. For initialization (timestep, minimal and + * // maximal values) the values of the TimeNavigationController are used. + * // Thus, accessing methods of a navigation widget is normally not necessary, + * // since everything can be set via the (Qt-independent) TimeNavigationController. + * // The QmitkStepperAdapter converts the Qt-signals to Qt-independent + * // itk-events. + * new QmitkStepperAdapter(navigationWidget, timeCtrl->GetStepper()); + * \endcode + */ + class MITKCORE_EXPORT TimeNavigationController : public BaseController + { + public: + + mitkClassMacro(TimeNavigationController, BaseController); + itkNewMacro(Self); + + /** + * \brief Set the input time geometry out of which the + * time-related properties will be generated. + * + * Any previous set input geometry (3D or Time) will + * be ignored in the future. + */ + void SetInputWorldTimeGeometry(const TimeGeometry* geometry); + itkGetConstObjectMacro(InputWorldTimeGeometry, mitk::TimeGeometry); + + /** + * \brief Do the actual time-related properties extraction + and send the currently selected time step to the connecte + observers (renderers). + */ + virtual void Update(); + + /** + * \brief Send the currently selected time step to the connected + * observers (renderers). + * + * Called by Update(). + */ + virtual void SendTime(); + + class MITKCORE_EXPORT TimeEvent : public itk::AnyEvent + { + public: + + typedef TimeEvent Self; + typedef itk::AnyEvent Superclass; + + TimeEvent(TimeStepType timeStep) : m_TimeStep(timeStep) {} + ~TimeEvent() override {} + const char *GetEventName() const override { return "TimeEvent"; } + bool CheckEvent(const ::itk::EventObject *e) const override { return dynamic_cast(e); } + ::itk::EventObject *MakeObject() const override { return new Self(m_TimeStep); } + TimeStepType GetTimeStep() const { return m_TimeStep; } + private: + + TimeStepType m_TimeStep; + void operator=(const Self &); + }; + + template + void ConnectTimeEvent(T* receiver) + { + typedef typename itk::ReceptorMemberCommand::Pointer ReceptorMemberCommandPointer; + ReceptorMemberCommandPointer eventReceptorCommand = itk::ReceptorMemberCommand::New(); + eventReceptorCommand->SetCallbackFunction(receiver, &T::SetGeometryTime); + unsigned long tag = AddObserver(TimeEvent(0), eventReceptorCommand); + m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); + } + + // use a templated method to get the right offset when casting to void* + template + void Disconnect(T* receiver) + { + auto i = m_ReceiverToObserverTagsMap.find(static_cast(receiver)); + if (i == m_ReceiverToObserverTagsMap.end()) + return; + const std::list& tags = i->second; + for (auto tagIter = tags.begin(); tagIter != tags.end(); ++tagIter) + { + RemoveObserver(*tagIter); + } + m_ReceiverToObserverTagsMap.erase(i); + } + + /** + * \brief Convenience method that returns the time step currently selected by the controller. + */ + TimeStepType GetSelectedTimeStep() const; + + /** + * \brief Convenience method that returns the time point that corresponds to the selected + * time step. The conversion is done using the time geometry of the controller. + * If the time geometry is not yet set, this function will always return 0.0. + */ + TimePointType GetSelectedTimePoint() const; + + protected: + + TimeNavigationController(); + ~TimeNavigationController() override; + + TimeGeometry::ConstPointer m_InputWorldTimeGeometry; + + bool m_BlockUpdate; + + typedef std::map> ObserverTagsMapType; + ObserverTagsMapType m_ReceiverToObserverTagsMap; + }; + +} // namespace mitk + +#endif diff --git a/Modules/Core/src/Controllers/mitkBaseController.cpp b/Modules/Core/src/Controllers/mitkBaseController.cpp index 135ac0763f..89342a64a9 100644 --- a/Modules/Core/src/Controllers/mitkBaseController.cpp +++ b/Modules/Core/src/Controllers/mitkBaseController.cpp @@ -1,48 +1,39 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkBaseController.h" #include "mitkBaseRenderer.h" -mitk::BaseController::BaseController() : m_LastUpdateTime(0) +mitk::BaseController::BaseController() + : m_LastUpdateTime(0) { - m_Slice = Stepper::New(); - m_Time = Stepper::New(); + m_Stepper = Stepper::New(); } mitk::BaseController::~BaseController() { } void mitk::BaseController::ExecuteOperation(mitk::Operation * /* *operation */) { } -mitk::Stepper *mitk::BaseController::GetSlice() +mitk::Stepper *mitk::BaseController::GetStepper() { - return m_Slice.GetPointer(); + return m_Stepper.GetPointer(); } -const mitk::Stepper* mitk::BaseController::GetSlice() const +const mitk::Stepper* mitk::BaseController::GetStepper() const { - return m_Slice.GetPointer(); + return m_Stepper.GetPointer(); } -mitk::Stepper *mitk::BaseController::GetTime() -{ - return m_Time.GetPointer(); -} - -const mitk::Stepper* mitk::BaseController::GetTime() const -{ - return m_Time.GetPointer(); -} diff --git a/Modules/Core/src/Controllers/mitkCameraRotationController.cpp b/Modules/Core/src/Controllers/mitkCameraRotationController.cpp index f6c94adbc5..a542ae61ec 100644 --- a/Modules/Core/src/Controllers/mitkCameraRotationController.cpp +++ b/Modules/Core/src/Controllers/mitkCameraRotationController.cpp @@ -1,89 +1,89 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkCameraRotationController.h" #include #include #include #include #include "mitkRenderingManager.h" #include "mitkVtkPropRenderer.h" mitk::CameraRotationController::CameraRotationController() : BaseController(), m_LastStepperValue(180), m_Camera(nullptr), m_RenderWindow(nullptr) { - m_Slice->SetAutoRepeat(true); - m_Slice->SetSteps(360); - m_Slice->SetPos(180); + m_Stepper->SetAutoRepeat(true); + m_Stepper->SetSteps(360); + m_Stepper->SetPos(180); itk::SimpleMemberCommand::Pointer sliceStepperChangedCommand, timeStepperChangedCommand; sliceStepperChangedCommand = itk::SimpleMemberCommand::New(); sliceStepperChangedCommand->SetCallbackFunction(this, &CameraRotationController::RotateCamera); - m_Slice->AddObserver(itk::ModifiedEvent(), sliceStepperChangedCommand); + m_Stepper->AddObserver(itk::ModifiedEvent(), sliceStepperChangedCommand); } mitk::CameraRotationController::~CameraRotationController() { } void mitk::CameraRotationController::RotateCamera() { if (!m_Camera) { this->AcquireCamera(); } if (m_Camera) { - int newStepperValue = m_Slice->GetPos(); + int newStepperValue = m_Stepper->GetPos(); m_Camera->Azimuth(m_LastStepperValue - newStepperValue); m_LastStepperValue = newStepperValue; // const_cast< RenderWindow* >(m_RenderWindow)->RequestUpdate(); // TODO does not work with movie generator! mitk::RenderingManager::GetInstance()->RequestUpdate(m_RenderWindow); // m_MultiWidget->RequestUpdate(); } } void mitk::CameraRotationController::AcquireCamera() { BaseRenderer *renderer = mitk::BaseRenderer::GetInstance(m_RenderWindow); const auto *propRenderer = dynamic_cast(renderer); if (propRenderer) { // get vtk renderer vtkRenderer *vtkrenderer = propRenderer->GetVtkRenderer(); if (vtkrenderer) { // get vtk camera vtkCamera *vtkcam = vtkrenderer->GetActiveCamera(); if (vtkcam) { // vtk smart pointer handling if (!m_Camera) { m_Camera = vtkcam; m_Camera->Register(nullptr); } else { m_Camera->UnRegister(nullptr); m_Camera = vtkcam; m_Camera->Register(nullptr); } } } } } diff --git a/Modules/Core/src/Controllers/mitkCrosshairManager.cpp b/Modules/Core/src/Controllers/mitkCrosshairManager.cpp index 2a5d497f4c..527d8dbaf9 100644 --- a/Modules/Core/src/Controllers/mitkCrosshairManager.cpp +++ b/Modules/Core/src/Controllers/mitkCrosshairManager.cpp @@ -1,167 +1,168 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkCrosshairManager.h" #include #include #include mitk::CrosshairManager::CrosshairManager(BaseRenderer* baseRenderer) { m_CrosshairDataNode = mitk::DataNode::New(); std::string rendererName = std::string(baseRenderer->GetName()); m_CrosshairDataNode->SetProperty("reslice.thickslices", mitk::ResliceMethodProperty::New()); m_CrosshairDataNode->SetProperty("reslice.thickslices.num", mitk::IntProperty::New(5)); m_CrosshairDataNode->SetProperty("Crosshair.Gap Size", mitk::IntProperty::New(32)); // set the crosshair only visible for this specific renderer m_CrosshairDataNode->SetVisibility(false); m_CrosshairDataNode->SetVisibility(true, baseRenderer); m_CrosshairDataNode->SetProperty("name", mitk::StringProperty::New(std::string(rendererName + "crosshairData"))); m_CrosshairDataNode->SetProperty("helper object", mitk::BoolProperty::New(true)); m_CrosshairData = CrosshairData::New(); m_CrosshairDataNode->SetData(m_CrosshairData); m_CrosshairDataNode->SetMapper(mitk::BaseRenderer::Standard2D, mitk::CrosshairVtkMapper2D::New()); } mitk::CrosshairManager::~CrosshairManager() { } void mitk::CrosshairManager::SetCrosshairPosition(const Point3D& selectedPoint) { if (m_CrosshairData.IsNull()) { mitkThrow() << "No crosshair data available. Crosshair is in an invalid state."; } m_CrosshairData->SetPosition(selectedPoint); } void mitk::CrosshairManager::UpdateCrosshairPosition(const SliceNavigationController* sliceNavigationController) { if (m_CrosshairData.IsNull()) { mitkThrow() << "No crosshair data available. Crosshair is in an invalid state."; } Point3D crosshairPosition = m_CrosshairData->GetPosition(); auto viewDirection = sliceNavigationController->GetViewDirection(); - unsigned int slicePosition = sliceNavigationController->GetSlice()->GetPos(); + unsigned int slicePosition = sliceNavigationController->GetStepper()->GetPos(); + switch (viewDirection) { case AnatomicalPlane::Original: return; case AnatomicalPlane::Axial: { crosshairPosition[2] = slicePosition; break; } case AnatomicalPlane::Coronal: { crosshairPosition[1] = slicePosition; break; } case AnatomicalPlane::Sagittal: { crosshairPosition[0] = slicePosition; break; } } m_CrosshairData->SetPosition(crosshairPosition); } mitk::Point3D mitk::CrosshairManager::GetCrosshairPosition() const { if (m_CrosshairData.IsNull()) { mitkThrow() << "No crosshair data available. Crosshair is in an invalid state."; } return m_CrosshairData->GetPosition(); } void mitk::CrosshairManager::SetCrosshairVisibility(bool visible, const BaseRenderer* baseRenderer) { if (m_CrosshairDataNode.IsNull()) { mitkThrow() << "No crosshair data node available. Crosshair is in an invalid state."; } m_CrosshairDataNode->SetVisibility(visible, baseRenderer); } bool mitk::CrosshairManager::GetCrosshairVisibility(const BaseRenderer* baseRenderer) const { if (m_CrosshairDataNode.IsNull()) { mitkThrow() << "No crosshair data node available. Crosshair is in an invalid state."; } bool visibility = false; if (m_CrosshairDataNode->GetVisibility(visibility, baseRenderer)) { return false; } return visibility; } void mitk::CrosshairManager::SetCrosshairGap(unsigned int gapSize) { if (m_CrosshairDataNode.IsNull()) { mitkThrow() << "No crosshair data node available. Crosshair is in an invalid state."; } m_CrosshairDataNode->SetIntProperty("Crosshair.Gap Size", gapSize); } void mitk::CrosshairManager::AddCrosshairNodeToDataStorage(DataStorage* dataStorage) { if (m_CrosshairDataNode.IsNull()) { mitkThrow() << "No crosshair data node available. Crosshair is in an invalid state."; } if (nullptr == dataStorage) { mitkThrow() << "Datastorage is invalid. Cannot add crosshair node."; } if (!dataStorage->Exists(m_CrosshairDataNode)) { dataStorage->Add(m_CrosshairDataNode); } } void mitk::CrosshairManager::RemoveCrosshairNodeFromDataStorage(DataStorage* dataStorage) { if (m_CrosshairDataNode.IsNull()) { mitkThrow() << "No crosshair data node available. Crosshair is in an invalid state."; } if (nullptr == dataStorage) { mitkThrow() << "Datastorage is invalid. Cannot remove crosshair node."; } dataStorage->Remove(m_CrosshairDataNode); } diff --git a/Modules/Core/src/Controllers/mitkRenderingManager.cpp b/Modules/Core/src/Controllers/mitkRenderingManager.cpp index 5df02a1a3e..3aee8165b1 100644 --- a/Modules/Core/src/Controllers/mitkRenderingManager.cpp +++ b/Modules/Core/src/Controllers/mitkRenderingManager.cpp @@ -1,791 +1,791 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include #include #include #include +#include #include #include #include #include #include #include #include #include #include namespace mitk { itkEventMacroDefinition(RenderingManagerEvent, itk::AnyEvent); itkEventMacroDefinition(RenderingManagerViewsInitializedEvent, RenderingManagerEvent); itkEventMacroDefinition(FocusChangedEvent, itk::AnyEvent); RenderingManager::Pointer RenderingManager::s_Instance = nullptr; RenderingManagerFactory *RenderingManager::s_RenderingManagerFactory = nullptr; RenderingManager::RenderingManager() : m_UpdatePending(false), m_MaxLOD(1), m_LODIncreaseBlocked(false), m_LODAbortMechanismEnabled(false), m_ClippingPlaneEnabled(false), - m_TimeNavigationController(SliceNavigationController::New()), + m_TimeNavigationController(TimeNavigationController::New()), m_DataStorage(nullptr), m_ConstrainedPanningZooming(true), m_FocusedRenderWindow(nullptr), m_AntiAliasing(AntiAliasing::FastApproximate) { m_ShadingEnabled.assign(3, false); m_ShadingValues.assign(4, 0.0); InitializePropertyList(); } RenderingManager::~RenderingManager() { // Decrease reference counts of all registered vtkRenderWindows for // proper destruction RenderWindowVector::iterator it; for (it = m_AllRenderWindows.begin(); it != m_AllRenderWindows.end(); ++it) { (*it)->UnRegister(nullptr); auto callbacks_it = this->m_RenderWindowCallbacksList.find(*it); if (callbacks_it != this->m_RenderWindowCallbacksList.end()) { (*it)->RemoveObserver(callbacks_it->second.commands[0u]); (*it)->RemoveObserver(callbacks_it->second.commands[1u]); (*it)->RemoveObserver(callbacks_it->second.commands[2u]); } } } void RenderingManager::SetFactory(RenderingManagerFactory *factory) { s_RenderingManagerFactory = factory; } const RenderingManagerFactory *RenderingManager::GetFactory() { return s_RenderingManagerFactory; } bool RenderingManager::HasFactory() { if (RenderingManager::s_RenderingManagerFactory) { return true; } else { return false; } } RenderingManager::Pointer RenderingManager::New() { const RenderingManagerFactory *factory = GetFactory(); if (factory == nullptr) return nullptr; return factory->CreateRenderingManager(); } RenderingManager *RenderingManager::GetInstance() { if (!RenderingManager::s_Instance) { if (s_RenderingManagerFactory) { s_Instance = s_RenderingManagerFactory->CreateRenderingManager(); } } return s_Instance; } bool RenderingManager::IsInstantiated() { if (RenderingManager::s_Instance) return true; else return false; } void RenderingManager::AddRenderWindow(vtkRenderWindow *renderWindow) { if (renderWindow && (m_RenderWindowList.find(renderWindow) == m_RenderWindowList.end())) { m_RenderWindowList[renderWindow] = RENDERING_INACTIVE; m_AllRenderWindows.push_back(renderWindow); if (m_DataStorage.IsNotNull()) BaseRenderer::GetInstance(renderWindow)->SetDataStorage(m_DataStorage.GetPointer()); // Register vtkRenderWindow instance renderWindow->Register(nullptr); // Add callbacks for rendering abort mechanism // BaseRenderer *renderer = BaseRenderer::GetInstance( renderWindow ); vtkCallbackCommand *startCallbackCommand = vtkCallbackCommand::New(); startCallbackCommand->SetCallback(RenderingManager::RenderingStartCallback); renderWindow->AddObserver(vtkCommand::StartEvent, startCallbackCommand); vtkCallbackCommand *progressCallbackCommand = vtkCallbackCommand::New(); progressCallbackCommand->SetCallback(RenderingManager::RenderingProgressCallback); renderWindow->AddObserver(vtkCommand::AbortCheckEvent, progressCallbackCommand); vtkCallbackCommand *endCallbackCommand = vtkCallbackCommand::New(); endCallbackCommand->SetCallback(RenderingManager::RenderingEndCallback); renderWindow->AddObserver(vtkCommand::EndEvent, endCallbackCommand); RenderWindowCallbacks callbacks; callbacks.commands[0u] = startCallbackCommand; callbacks.commands[1u] = progressCallbackCommand; callbacks.commands[2u] = endCallbackCommand; this->m_RenderWindowCallbacksList[renderWindow] = callbacks; // Delete vtk variables correctly startCallbackCommand->Delete(); progressCallbackCommand->Delete(); endCallbackCommand->Delete(); } } void RenderingManager::RemoveRenderWindow(vtkRenderWindow *renderWindow) { if (m_RenderWindowList.erase(renderWindow)) { auto callbacks_it = this->m_RenderWindowCallbacksList.find(renderWindow); if (callbacks_it != this->m_RenderWindowCallbacksList.end()) { renderWindow->RemoveObserver(callbacks_it->second.commands[0u]); renderWindow->RemoveObserver(callbacks_it->second.commands[1u]); renderWindow->RemoveObserver(callbacks_it->second.commands[2u]); this->m_RenderWindowCallbacksList.erase(callbacks_it); } auto rw_it = std::find(m_AllRenderWindows.begin(), m_AllRenderWindows.end(), renderWindow); if (rw_it != m_AllRenderWindows.cend()) { // Decrease reference count for proper destruction (*rw_it)->UnRegister(nullptr); m_AllRenderWindows.erase(rw_it); } } } const RenderingManager::RenderWindowVector &RenderingManager::GetAllRegisteredRenderWindows() { return m_AllRenderWindows; } void RenderingManager::RequestUpdate(vtkRenderWindow *renderWindow) { // If the renderWindow is not valid, we do not want to inadvertently create // an entry in the m_RenderWindowList map. It is possible if the user is // regularly calling AddRenderer and RemoveRenderer for a rendering update // to come into this method with a renderWindow pointer that is valid in the // sense that the window does exist within the application, but that // renderWindow has been temporarily removed from this RenderingManager for // performance reasons. if (m_RenderWindowList.find(renderWindow) == m_RenderWindowList.cend()) { return; } m_RenderWindowList[renderWindow] = RENDERING_REQUESTED; if (!m_UpdatePending) { m_UpdatePending = true; this->GenerateRenderingRequestEvent(); } } void RenderingManager::ForceImmediateUpdate(vtkRenderWindow *renderWindow) { // If the renderWindow is not valid, we do not want to inadvertently create // an entry in the m_RenderWindowList map. It is possible if the user is // regularly calling AddRenderer and RemoveRenderer for a rendering update // to come into this method with a renderWindow pointer that is valid in the // sense that the window does exist within the application, but that // renderWindow has been temporarily removed from this RenderingManager for // performance reasons. if (m_RenderWindowList.find(renderWindow) == m_RenderWindowList.cend()) { return; } // Erase potentially pending requests for this window m_RenderWindowList[renderWindow] = RENDERING_INACTIVE; m_UpdatePending = false; // Immediately repaint this window (implementation platform specific) // If the size is 0 it crashes int *size = renderWindow->GetSize(); if (0 != size[0] && 0 != size[1]) { // prepare the camera etc. before rendering // Note: this is a very important step which should be called before the VTK render! // If you modify the camera anywhere else or after the render call, the scene cannot be seen. auto *vPR = dynamic_cast(BaseRenderer::GetInstance(renderWindow)); if (vPR) vPR->PrepareRender(); // Execute rendering renderWindow->Render(); } } void RenderingManager::RequestUpdateAll(RequestType type) { RenderWindowList::const_iterator it; for (it = m_RenderWindowList.cbegin(); it != m_RenderWindowList.cend(); ++it) { int id = BaseRenderer::GetInstance(it->first)->GetMapperID(); if ((type == REQUEST_UPDATE_ALL) || ((type == REQUEST_UPDATE_2DWINDOWS) && (id == 1)) || ((type == REQUEST_UPDATE_3DWINDOWS) && (id == 2))) { this->RequestUpdate(it->first); } } } void RenderingManager::ForceImmediateUpdateAll(RequestType type) { RenderWindowList::const_iterator it; for (it = m_RenderWindowList.cbegin(); it != m_RenderWindowList.cend(); ++it) { int id = BaseRenderer::GetInstance(it->first)->GetMapperID(); if ((type == REQUEST_UPDATE_ALL) || ((type == REQUEST_UPDATE_2DWINDOWS) && (id == 1)) || ((type == REQUEST_UPDATE_3DWINDOWS) && (id == 2))) { // Immediately repaint this window (implementation platform specific) // If the size is 0, it crashes this->ForceImmediateUpdate(it->first); } } } void RenderingManager::InitializeViewsByBoundingObjects(const DataStorage* dataStorage) { if (nullptr == dataStorage) { return; } // get all nodes that have not set "includeInBoundingBox" to false auto pred = NodePredicateNot::New(NodePredicateProperty::New("includeInBoundingBox", BoolProperty::New(false))); DataStorage::SetOfObjects::ConstPointer filteredNodes = dataStorage->GetSubset(pred); TimeGeometry::ConstPointer boundingGeometry; if (!filteredNodes->empty()) { // calculate bounding geometry of these nodes boundingGeometry = dataStorage->ComputeBoundingGeometry3D(filteredNodes, "visible"); } // initialize the views to the bounding geometry this->InitializeViews(boundingGeometry); } void RenderingManager::InitializeViewByBoundingObjects(vtkRenderWindow* renderWindow, const DataStorage* dataStorage, bool resetCamera) { if (nullptr == dataStorage) { return; } // get all nodes that have not set "includeInBoundingBox" to false auto pred = NodePredicateNot::New(NodePredicateProperty::New("includeInBoundingBox", BoolProperty::New(false))); DataStorage::SetOfObjects::ConstPointer filteredNodes = dataStorage->GetSubset(pred); BaseRenderer* baseRenderer = BaseRenderer::GetInstance(renderWindow); TimeGeometry::ConstPointer boundingGeometry; if (!filteredNodes->empty()) { // calculate bounding geometry of these nodes boundingGeometry = dataStorage->ComputeBoundingGeometry3D(filteredNodes, "visible", baseRenderer); } // initialize the views to the bounding geometry this->InitializeView(renderWindow, boundingGeometry, resetCamera); } bool RenderingManager::InitializeViews(const BaseGeometry* geometry, RequestType type, bool resetCamera) { ProportionalTimeGeometry::Pointer propTimeGeometry = ProportionalTimeGeometry::New(); propTimeGeometry->Initialize(dynamic_cast(geometry->Clone().GetPointer()), 1); return this->InitializeViews(propTimeGeometry, type, resetCamera); } bool RenderingManager::InitializeViews(const TimeGeometry* geometry, RequestType type, bool resetCamera) { bool boundingBoxInitialized = false; TimeGeometry::Pointer modifiedGeometry = nullptr; try { boundingBoxInitialized = this->ExtendGeometryForBoundingBox(geometry, modifiedGeometry); } catch (Exception& exception) { mitkReThrow(exception); } + if (boundingBoxInitialized) + { + this->GetTimeNavigationController()->SetInputWorldTimeGeometry(modifiedGeometry); + } + this->GetTimeNavigationController()->Update(); + RenderWindowVector allRenderWindows = this->GetAllRegisteredRenderWindows(); RenderWindowVector::const_iterator it; for (it = allRenderWindows.cbegin(); it != allRenderWindows.cend(); ++it) { BaseRenderer *baseRenderer = BaseRenderer::GetInstance(*it); baseRenderer->SetConstrainZoomingAndPanning(this->GetConstrainedPanningZooming()); int id = baseRenderer->GetMapperID(); if ((type == REQUEST_UPDATE_ALL) || ((type == REQUEST_UPDATE_2DWINDOWS) && (id == 1)) || ((type == REQUEST_UPDATE_3DWINDOWS) && (id == 2))) { this->InternalViewInitialization(baseRenderer, modifiedGeometry, boundingBoxInitialized, id, resetCamera); } } - if (boundingBoxInitialized) - { - this->GetTimeNavigationController()->SetInputWorldTimeGeometry(modifiedGeometry); - } - this->GetTimeNavigationController()->Update(); - this->RequestUpdateAll(type); // inform listeners that views have been initialized this->InvokeEvent(RenderingManagerViewsInitializedEvent()); return boundingBoxInitialized; } bool RenderingManager::InitializeViews(RequestType type) { const RenderWindowVector allRenderWindows = this->GetAllRegisteredRenderWindows(); RenderWindowVector::const_iterator it; for (it = allRenderWindows.cbegin(); it != allRenderWindows.cend(); ++it) { BaseRenderer *baseRenderer = BaseRenderer::GetInstance(*it); int id = baseRenderer->GetMapperID(); if ((type == REQUEST_UPDATE_ALL) || ((type == REQUEST_UPDATE_2DWINDOWS) && (id == 1)) || ((type == REQUEST_UPDATE_3DWINDOWS) && (id == 2))) { this->InternalViewInitialization(baseRenderer, nullptr, false, id, false); } } this->RequestUpdateAll(type); // inform listeners that views have been initialized this->InvokeEvent(RenderingManagerViewsInitializedEvent()); return true; } bool RenderingManager::InitializeView(vtkRenderWindow* renderWindow, const BaseGeometry* geometry, bool resetCamera) { ProportionalTimeGeometry::Pointer propTimeGeometry = ProportionalTimeGeometry::New(); propTimeGeometry->Initialize(dynamic_cast(geometry->Clone().GetPointer()), 1); return this->InitializeView(renderWindow, propTimeGeometry, resetCamera); } bool RenderingManager::InitializeView(vtkRenderWindow* renderWindow, const TimeGeometry* geometry, bool resetCamera) { bool boundingBoxInitialized = false; TimeGeometry::Pointer modifiedGeometry = nullptr; try { boundingBoxInitialized = this->ExtendGeometryForBoundingBox(geometry, modifiedGeometry); } catch (Exception &exception) { mitkReThrow(exception); } - BaseRenderer* baseRenderer = BaseRenderer::GetInstance(renderWindow); - baseRenderer->SetConstrainZoomingAndPanning(this->GetConstrainedPanningZooming()); - - int id = baseRenderer->GetMapperID(); - this->InternalViewInitialization(baseRenderer, modifiedGeometry, boundingBoxInitialized, id, resetCamera); - if (boundingBoxInitialized) { this->GetTimeNavigationController()->SetInputWorldTimeGeometry(modifiedGeometry); } - this->GetTimeNavigationController()->Update(); + BaseRenderer* baseRenderer = BaseRenderer::GetInstance(renderWindow); + baseRenderer->SetConstrainZoomingAndPanning(this->GetConstrainedPanningZooming()); + + const int id = baseRenderer->GetMapperID(); + this->InternalViewInitialization(baseRenderer, modifiedGeometry, boundingBoxInitialized, id, resetCamera); + this->RequestUpdate(renderWindow); // inform listeners that views have been initialized this->InvokeEvent(RenderingManagerViewsInitializedEvent()); return boundingBoxInitialized; } bool RenderingManager::InitializeView(vtkRenderWindow *renderWindow) { BaseRenderer *baseRenderer = BaseRenderer::GetInstance(renderWindow); int id = baseRenderer->GetMapperID(); this->InternalViewInitialization(baseRenderer, nullptr, false, id, false); this->RequestUpdate(renderWindow); // inform listeners that views have been initialized this->InvokeEvent(RenderingManagerViewsInitializedEvent()); return true; } void RenderingManager::InternalViewInitialization(BaseRenderer *baseRenderer, const TimeGeometry *geometry, bool boundingBoxInitialized, int mapperID, bool resetCamera) { SliceNavigationController *nc = baseRenderer->GetSliceNavigationController(); nc->SetViewDirectionToDefault(); if (boundingBoxInitialized) { // Set geometry for NC nc->SetInputWorldTimeGeometry(geometry); nc->Update(); if (resetCamera) { if (mapperID == BaseRenderer::Standard2D) { // For 2D SNCs, steppers are set so that the cross is centered in the image - nc->GetSlice()->SetPos(nc->GetSlice()->GetSteps() / 2); + nc->GetStepper()->SetPos(nc->GetStepper()->GetSteps() / 2); baseRenderer->GetCameraController()->Fit(); } else if (mapperID == BaseRenderer::Standard3D) { baseRenderer->GetCameraController()->SetViewToAnterior(); } } } else { nc->Update(); } } bool RenderingManager::ExtendGeometryForBoundingBox(const TimeGeometry *geometry, TimeGeometry::Pointer& modifiedGeometry) { bool boundingBoxInitialized = false; if (nullptr == geometry) { return boundingBoxInitialized; } modifiedGeometry = geometry->Clone(); if (modifiedGeometry.IsNull()) { return boundingBoxInitialized; } if (modifiedGeometry->GetBoundingBoxInWorld()->GetDiagonalLength2() > eps) { boundingBoxInitialized = true; } // make sure bounding box has an extent bigger than zero in any direction for (TimeStepType step = 0; step < modifiedGeometry->CountTimeSteps(); ++step) { BaseGeometry::BoundsArrayType newBounds = modifiedGeometry->GetGeometryForTimeStep(step)->GetBounds(); for (unsigned int dimension = 0; (2 * dimension) < newBounds.Size(); dimension++) { // check for equality but for an epsilon if (Equal(newBounds[2 * dimension], newBounds[2 * dimension + 1])) { newBounds[2 * dimension + 1] += 1; if (Equal( newBounds[2 * dimension], newBounds[2 * dimension + 1])) // newBounds will still be equal if values are beyond double precision { mitkThrow() << "One dimension of object data has zero length, please make sure you're not using numbers " "beyond double precision as coordinates."; } } } modifiedGeometry->GetGeometryForTimeStep(step)->SetBounds(newBounds); } return boundingBoxInitialized; } - const SliceNavigationController *RenderingManager::GetTimeNavigationController() const + const TimeNavigationController *RenderingManager::GetTimeNavigationController() const { return m_TimeNavigationController.GetPointer(); } - SliceNavigationController *RenderingManager::GetTimeNavigationController() + TimeNavigationController *RenderingManager::GetTimeNavigationController() { return m_TimeNavigationController.GetPointer(); } void RenderingManager::ExecutePendingRequests() { m_UpdatePending = false; // Satisfy all pending update requests RenderWindowList::const_iterator it; int i = 0; for (it = m_RenderWindowList.cbegin(); it != m_RenderWindowList.cend(); ++it, ++i) { if (it->second == RENDERING_REQUESTED) { this->ForceImmediateUpdate(it->first); } } } void RenderingManager::RenderingStartCallback(vtkObject *caller, unsigned long, void *, void *) { auto renderingManager = RenderingManager::GetInstance(); auto renderWindow = dynamic_cast(caller); if (nullptr != renderWindow) renderingManager->m_RenderWindowList[renderWindow] = RENDERING_INPROGRESS; renderingManager->m_UpdatePending = false; } void RenderingManager::RenderingProgressCallback(vtkObject *caller, unsigned long, void *, void *) { auto renderingManager = RenderingManager::GetInstance(); if (renderingManager->m_LODAbortMechanismEnabled) { auto renderWindow = dynamic_cast(caller); if (nullptr != renderWindow) { auto renderer = BaseRenderer::GetInstance(renderWindow); if (nullptr != renderer && 0 < renderer->GetNumberOfVisibleLODEnabledMappers()) renderingManager->DoMonitorRendering(); } } } void RenderingManager::RenderingEndCallback(vtkObject *caller, unsigned long, void *, void *) { auto renderWindow = dynamic_cast(caller); if (nullptr == renderWindow) { return; } auto renderer = BaseRenderer::GetInstance(renderWindow); if (nullptr == renderer) { return; } auto renderingManager = RenderingManager::GetInstance(); renderingManager->m_RenderWindowList[renderer->GetRenderWindow()] = RENDERING_INACTIVE; if (0 < renderer->GetNumberOfVisibleLODEnabledMappers()) { if (0 == renderingManager->m_NextLODMap[renderer]) { renderingManager->StartOrResetTimer(); } else { renderingManager->m_NextLODMap[renderer] = 0; } } } bool RenderingManager::IsRendering() const { RenderWindowList::const_iterator it; for (it = m_RenderWindowList.cbegin(); it != m_RenderWindowList.cend(); ++it) { if (it->second == RENDERING_INPROGRESS) { return true; } } return false; } void RenderingManager::AbortRendering() { RenderWindowList::const_iterator it; for (it = m_RenderWindowList.cbegin(); it != m_RenderWindowList.cend(); ++it) { if (it->second == RENDERING_INPROGRESS) { it->first->SetAbortRender(true); m_RenderingAbortedMap[BaseRenderer::GetInstance(it->first)] = true; } } } int RenderingManager::GetNextLOD(BaseRenderer *renderer) { if (renderer != nullptr) { return m_NextLODMap[renderer]; } else { return 0; } } void RenderingManager::ExecutePendingHighResRenderingRequest() { RenderWindowList::const_iterator it; for (it = m_RenderWindowList.cbegin(); it != m_RenderWindowList.cend(); ++it) { BaseRenderer *renderer = BaseRenderer::GetInstance(it->first); if (renderer->GetNumberOfVisibleLODEnabledMappers() > 0) { if (m_NextLODMap[renderer] == 0) { m_NextLODMap[renderer] = 1; RequestUpdate(it->first); } } } } void RenderingManager::SetMaximumLOD(unsigned int max) { m_MaxLOD = max; } // enable/disable shading void RenderingManager::SetShading(bool state, unsigned int lod) { if (lod > m_MaxLOD) { itkWarningMacro(<< "LOD out of range requested: " << lod << " maxLOD: " << m_MaxLOD); return; } m_ShadingEnabled[lod] = state; } bool RenderingManager::GetShading(unsigned int lod) { if (lod > m_MaxLOD) { itkWarningMacro(<< "LOD out of range requested: " << lod << " maxLOD: " << m_MaxLOD); return false; } return m_ShadingEnabled[lod]; } // enable/disable the clipping plane void RenderingManager::SetClippingPlaneStatus(bool status) { m_ClippingPlaneEnabled = status; } bool RenderingManager::GetClippingPlaneStatus() { return m_ClippingPlaneEnabled; } void RenderingManager::SetShadingValues(float ambient, float diffuse, float specular, float specpower) { m_ShadingValues[0] = ambient; m_ShadingValues[1] = diffuse; m_ShadingValues[2] = specular; m_ShadingValues[3] = specpower; } RenderingManager::FloatVector &RenderingManager::GetShadingValues() { return m_ShadingValues; } void RenderingManager::InitializePropertyList() { if (m_PropertyList.IsNull()) { m_PropertyList = PropertyList::New(); } this->SetProperty("coupled-zoom", BoolProperty::New(false)); this->SetProperty("coupled-plane-rotation", BoolProperty::New(false)); this->SetProperty("MIP-slice-rendering", BoolProperty::New(false)); } PropertyList::Pointer RenderingManager::GetPropertyList() const { return m_PropertyList; } BaseProperty *RenderingManager::GetProperty(const char *propertyKey) const { return m_PropertyList->GetProperty(propertyKey); } void RenderingManager::SetProperty(const char *propertyKey, BaseProperty *propertyValue) { m_PropertyList->SetProperty(propertyKey, propertyValue); } void RenderingManager::SetDataStorage(DataStorage *storage) { if (storage != nullptr) { m_DataStorage = storage; RenderingManager::RenderWindowVector::const_iterator iter; for (iter = m_AllRenderWindows.cbegin(); iter < m_AllRenderWindows.cend(); ++iter) { BaseRenderer::GetInstance((*iter))->SetDataStorage(m_DataStorage.GetPointer()); } } } void RenderingManager::SetRenderWindowFocus(vtkRenderWindow *focusWindow) { if (focusWindow != m_FocusedRenderWindow) { if (!focusWindow || (m_RenderWindowList.find(focusWindow) != m_RenderWindowList.cend())) { m_FocusedRenderWindow = focusWindow; this->InvokeEvent(FocusChangedEvent()); return; } MITK_ERROR << "Tried to set a RenderWindow that does not exist."; } } void RenderingManager::SetAntiAliasing(AntiAliasing antiAliasing) { if (m_AntiAliasing != antiAliasing) { auto renderingManager = RenderingManager::GetInstance(); auto renderWindows = renderingManager->GetAllRegisteredRenderWindows(); for (auto renderWindow : renderWindows) { auto renderers = renderWindow->GetRenderers(); if (nullptr != renderers) { renderers->InitTraversal(); auto renderer = renderers->GetNextItem(); while (nullptr != renderer) { renderer->SetUseFXAA(AntiAliasing::FastApproximate == antiAliasing); renderer = renderers->GetNextItem(); } renderingManager->RequestUpdate(renderWindow); } } m_AntiAliasing = antiAliasing; } } // Create and register generic RenderingManagerFactory. TestingRenderingManagerFactory renderingManagerFactory; } // namespace diff --git a/Modules/Core/src/Controllers/mitkSliceNavigationController.cpp b/Modules/Core/src/Controllers/mitkSliceNavigationController.cpp index 9eacf0b0f3..689c473f14 100644 --- a/Modules/Core/src/Controllers/mitkSliceNavigationController.cpp +++ b/Modules/Core/src/Controllers/mitkSliceNavigationController.cpp @@ -1,542 +1,471 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ -#include "mitkSliceNavigationController.h" +#include #include -#include "mitkBaseRenderer.h" -#include "mitkOperation.h" -#include "mitkOperationActor.h" - -#include "mitkProportionalTimeGeometry.h" -#include "mitkArbitraryTimeGeometry.h" -#include "mitkSlicedGeometry3D.h" -#include "mitkVtkPropRenderer.h" - -#include "mitkImage.h" -#include "mitkImagePixelReadAccessor.h" -#include "mitkInteractionConst.h" -#include "mitkNodePredicateDataType.h" -#include "mitkOperationEvent.h" -#include "mitkPixelTypeMultiplex.h" -#include "mitkPlaneGeometry.h" -#include "mitkPlaneOperation.h" -#include "mitkPointOperation.h" - -#include "mitkApplyTransformMatrixOperation.h" +#include +#include +#include +#include +#include +#include +#include +#include + +#include +#include +#include +#include +#include +#include +#include +#include +#include + +#include namespace mitk { SliceNavigationController::SliceNavigationController() : BaseController() , m_InputWorldTimeGeometry(TimeGeometry::ConstPointer()) , m_CreatedWorldGeometry(TimeGeometry::Pointer()) , m_ViewDirection(AnatomicalPlane::Axial) , m_DefaultViewDirection(AnatomicalPlane::Axial) , m_RenderingManager(RenderingManager::Pointer()) , m_Renderer(nullptr) , m_BlockUpdate(false) , m_SliceLocked(false) , m_SliceRotationLocked(false) { typedef itk::SimpleMemberCommand SNCCommandType; - SNCCommandType::Pointer sliceStepperChangedCommand, timeStepperChangedCommand; + SNCCommandType::Pointer sliceStepperChangedCommand; sliceStepperChangedCommand = SNCCommandType::New(); - timeStepperChangedCommand = SNCCommandType::New(); - sliceStepperChangedCommand->SetCallbackFunction(this, &SliceNavigationController::SendSlice); - timeStepperChangedCommand->SetCallbackFunction(this, &SliceNavigationController::SendTime); - - m_Slice->AddObserver(itk::ModifiedEvent(), sliceStepperChangedCommand); - m_Time->AddObserver(itk::ModifiedEvent(), timeStepperChangedCommand); - - m_Slice->SetUnitName("mm"); - m_Time->SetUnitName("ms"); + m_Stepper->AddObserver(itk::ModifiedEvent(), sliceStepperChangedCommand); + m_Stepper->SetUnitName("mm"); } SliceNavigationController::~SliceNavigationController() { // nothing here } void SliceNavigationController::SetInputWorldTimeGeometry(const TimeGeometry* geometry) { if (nullptr != geometry) { if (geometry->GetBoundingBoxInWorld()->GetDiagonalLength2() < eps) { itkWarningMacro("setting an empty bounding-box"); geometry = nullptr; } } if (m_InputWorldTimeGeometry != geometry) { m_InputWorldTimeGeometry = geometry; this->Modified(); } } void SliceNavigationController::SetViewDirectionToDefault() { m_ViewDirection = m_DefaultViewDirection; } const char* SliceNavigationController::GetViewDirectionAsString() const { const char* viewDirectionString; switch (m_ViewDirection) { case AnatomicalPlane::Axial: viewDirectionString = "Axial"; break; case AnatomicalPlane::Sagittal: viewDirectionString = "Sagittal"; break; case AnatomicalPlane::Coronal: viewDirectionString = "Coronal"; break; case AnatomicalPlane::Original: viewDirectionString = "Original"; break; default: viewDirectionString = "No view direction available"; break; } return viewDirectionString; } void SliceNavigationController::Update() { if (!m_BlockUpdate) { if (m_ViewDirection == AnatomicalPlane::Sagittal) { this->Update(AnatomicalPlane::Sagittal, true, true, false); } else if (m_ViewDirection == AnatomicalPlane::Coronal) { this->Update(AnatomicalPlane::Coronal, false, true, false); } else if (m_ViewDirection == AnatomicalPlane::Axial) { this->Update(AnatomicalPlane::Axial, false, false, true); } else { this->Update(m_ViewDirection); } } } void SliceNavigationController::Update(AnatomicalPlane viewDirection, bool top, bool frontside, bool rotated) { if (m_BlockUpdate) { return; } if (m_InputWorldTimeGeometry.IsNull()) { return; } if (0 == m_InputWorldTimeGeometry->CountTimeSteps()) { return; } m_BlockUpdate = true; if (m_LastUpdateTime < m_InputWorldTimeGeometry->GetMTime()) { Modified(); } this->SetViewDirection(viewDirection); if (m_LastUpdateTime < GetMTime()) { m_LastUpdateTime = GetMTime(); this->CreateWorldGeometry(top, frontside, rotated); } // unblock update; we may do this now, because if m_BlockUpdate was already // true before this method was entered, then we will never come here. m_BlockUpdate = false; // Send the geometry. Do this even if nothing was changed, because maybe - // Update() was only called to re-send the old geometry and time/slice data. + // Update() was only called to re-send the old geometry and slice data. this->SendCreatedWorldGeometry(); this->SendSlice(); - this->SendTime(); // Adjust the stepper range of slice stepper according to geometry this->AdjustSliceStepperRange(); } void SliceNavigationController::SendCreatedWorldGeometry() { if (!m_BlockUpdate) { this->InvokeEvent(GeometrySendEvent(m_CreatedWorldGeometry, 0)); } } void SliceNavigationController::SendCreatedWorldGeometryUpdate() { if (!m_BlockUpdate) { - this->InvokeEvent(GeometryUpdateEvent(m_CreatedWorldGeometry, m_Slice->GetPos())); + this->InvokeEvent(GeometryUpdateEvent(m_CreatedWorldGeometry, m_Stepper->GetPos())); } } void SliceNavigationController::SendSlice() { if (!m_BlockUpdate) { if (m_CreatedWorldGeometry.IsNotNull()) { - this->InvokeEvent(GeometrySliceEvent(m_CreatedWorldGeometry, m_Slice->GetPos())); - RenderingManager::GetInstance()->RequestUpdateAll(); - } - } - } - - void SliceNavigationController::SendTime() - { - if (!m_BlockUpdate) - { - if (m_CreatedWorldGeometry.IsNotNull()) - { - this->InvokeEvent(GeometryTimeEvent(m_CreatedWorldGeometry, m_Time->GetPos())); + this->InvokeEvent(GeometrySliceEvent(m_CreatedWorldGeometry, m_Stepper->GetPos())); RenderingManager::GetInstance()->RequestUpdateAll(); } } } - void SliceNavigationController::SetGeometry(const itk::EventObject&) - { - // not implemented - } - - void SliceNavigationController::SetGeometryTime(const itk::EventObject& geometryTimeEvent) - { - if (m_CreatedWorldGeometry.IsNull()) - { - return; - } - - const auto* timeEvent = dynamic_cast(&geometryTimeEvent); - assert(timeEvent != nullptr); - - TimeGeometry* timeGeometry = timeEvent->GetTimeGeometry(); - assert(timeGeometry != nullptr); - - auto timeStep = (int)timeEvent->GetPos(); - ScalarType timeInMS; - timeInMS = timeGeometry->TimeStepToTimePoint(timeStep); - timeStep = m_CreatedWorldGeometry->TimePointToTimeStep(timeInMS); - this->GetTime()->SetPos(timeStep); - } - - void SliceNavigationController::SetGeometrySlice(const itk::EventObject& geometrySliceEvent) - { - const auto* sliceEvent = dynamic_cast(&geometrySliceEvent); - assert(sliceEvent != nullptr); - - this->GetSlice()->SetPos(sliceEvent->GetPos()); - } - void SliceNavigationController::SelectSliceByPoint(const Point3D& point) { if (m_CreatedWorldGeometry.IsNull()) { return; } int selectedSlice = -1; try { selectedSlice = SliceNavigationHelper::SelectSliceByPoint(m_CreatedWorldGeometry, point); } catch (const mitk::Exception& e) { MITK_ERROR << "Unable to select a slice by the given point " << point << "\n" << "Reason: " << e.GetDescription(); } if (-1 == selectedSlice) { return; } - this->GetSlice()->SetPos(selectedSlice); + m_Stepper->SetPos(selectedSlice); this->SendCreatedWorldGeometryUpdate(); // send crosshair event SetCrosshairEvent.Send(point); } void SliceNavigationController::ReorientSlices(const Point3D& point, const Vector3D& normal) { if (m_CreatedWorldGeometry.IsNull()) { return; } PlaneOperation op(OpORIENT, point, normal); m_CreatedWorldGeometry->ExecuteOperation(&op); this->SendCreatedWorldGeometryUpdate(); } void SliceNavigationController::ReorientSlices(const Point3D& point, const Vector3D& axisVec0, const Vector3D& axisVec1) { if (m_CreatedWorldGeometry.IsNull()) { return; } PlaneOperation op(OpORIENT, point, axisVec0, axisVec1); m_CreatedWorldGeometry->ExecuteOperation(&op); this->SendCreatedWorldGeometryUpdate(); } const BaseGeometry* SliceNavigationController::GetCurrentGeometry3D() { if (m_CreatedWorldGeometry.IsNull()) { return nullptr; + } - return m_CreatedWorldGeometry->GetGeometryForTimeStep(this->GetTime()->GetPos()); + const auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + if (nullptr == timeNavigationController) + { + return nullptr; + } + + const TimeStepType selectedTimestep = timeNavigationController->GetSelectedTimeStep(); + return m_CreatedWorldGeometry->GetGeometryForTimeStep(selectedTimestep); } const PlaneGeometry* SliceNavigationController::GetCurrentPlaneGeometry() { const auto* slicedGeometry = dynamic_cast(this->GetCurrentGeometry3D()); if (nullptr == slicedGeometry) { return nullptr; } - return slicedGeometry->GetPlaneGeometry(this->GetSlice()->GetPos()); + return slicedGeometry->GetPlaneGeometry(m_Stepper->GetPos()); } void SliceNavigationController::AdjustSliceStepperRange() { const auto* slicedGeometry = dynamic_cast(this->GetCurrentGeometry3D()); const Vector3D& direction = slicedGeometry->GetDirectionVector(); int c = 0; int i, k = 0; for (i = 0; i < 3; ++i) { if (fabs(direction[i]) < 0.000000001) { ++c; } else { k = i; } } if (c == 2) { ScalarType min = slicedGeometry->GetOrigin()[k]; ScalarType max = min + slicedGeometry->GetExtentInMM(k); - m_Slice->SetRange(min, max); + m_Stepper->SetRange(min, max); } else { - m_Slice->InvalidateRange(); + m_Stepper->InvalidateRange(); } } void SliceNavigationController::ExecuteOperation(Operation* operation) { // switch on type // - select best slice for a given point // - rotate created world geometry according to Operation->SomeInfo() if (!operation || m_CreatedWorldGeometry.IsNull()) { return; } switch (operation->GetOperationType()) { case OpMOVE: // should be a point operation { if (!m_SliceLocked) // do not move the cross position { // select a slice auto* po = dynamic_cast(operation); if (po && po->GetIndex() == -1) { this->SelectSliceByPoint(po->GetPoint()); } else if (po && po->GetIndex() != -1) // undo case because index != -1, index holds the old position of this slice { - this->GetSlice()->SetPos(po->GetIndex()); + m_Stepper->SetPos(po->GetIndex()); } } break; } case OpRESTOREPLANEPOSITION: { m_CreatedWorldGeometry->ExecuteOperation(operation); this->SendCreatedWorldGeometryUpdate(); break; } case OpAPPLYTRANSFORMMATRIX: { m_CreatedWorldGeometry->ExecuteOperation(operation); this->SendCreatedWorldGeometryUpdate(); break; } default: { // do nothing break; } } } - TimeStepType SliceNavigationController::GetSelectedTimeStep() const - { - return this->GetTime()->GetPos(); - } - - TimePointType SliceNavigationController::GetSelectedTimePoint() const + void SliceNavigationController::CreateWorldGeometry(bool top, bool frontside, bool rotated) { - auto timeStep = this->GetSelectedTimeStep(); - - if (m_CreatedWorldGeometry.IsNull()) - { - return 0.0; - } - - if (!m_CreatedWorldGeometry->IsValidTimeStep(timeStep)) + const auto timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + if (nullptr == timeNavigationController) { - mitkThrow() << "SliceNavigationController is in an invalid state. It has a time step" - << "selected that is not covered by its time geometry. Selected time step: " << timeStep - << "; TimeGeometry steps count: " << m_CreatedWorldGeometry->CountTimeSteps(); + return; } - return m_CreatedWorldGeometry->TimeStepToTimePoint(timeStep); - } - - void SliceNavigationController::CreateWorldGeometry(bool top, bool frontside, bool rotated) - { // initialize the viewplane SlicedGeometry3D::Pointer slicedWorldGeometry; BaseGeometry::ConstPointer currentGeometry; // get the BaseGeometry (ArbitraryTimeGeometry or ProportionalTimeGeometry) of the current time step - auto currentTimeStep = this->GetTime()->GetPos(); - if (m_InputWorldTimeGeometry->IsValidTimeStep(currentTimeStep)) + const TimeStepType selectedTimestep = timeNavigationController->GetSelectedTimeStep(); + if (m_InputWorldTimeGeometry->IsValidTimeStep(selectedTimestep)) { - currentGeometry = m_InputWorldTimeGeometry->GetGeometryForTimeStep(currentTimeStep); + currentGeometry = m_InputWorldTimeGeometry->GetGeometryForTimeStep(selectedTimestep); } else { currentGeometry = m_InputWorldTimeGeometry->GetGeometryForTimeStep(0); } if (AnatomicalPlane::Original == m_ViewDirection) { slicedWorldGeometry = dynamic_cast( - m_InputWorldTimeGeometry->GetGeometryForTimeStep(currentTimeStep).GetPointer()); + m_InputWorldTimeGeometry->GetGeometryForTimeStep(selectedTimestep).GetPointer()); if (slicedWorldGeometry.IsNull()) { slicedWorldGeometry = SlicedGeometry3D::New(); slicedWorldGeometry->InitializePlanes(currentGeometry, AnatomicalPlane::Original, top, frontside, rotated); slicedWorldGeometry->SetSliceNavigationController(this); } } else { slicedWorldGeometry = SlicedGeometry3D::New(); slicedWorldGeometry->InitializePlanes(currentGeometry, m_ViewDirection, top, frontside, rotated); slicedWorldGeometry->SetSliceNavigationController(this); } // reset the stepper - m_Slice->SetSteps(slicedWorldGeometry->GetSlices()); - m_Slice->SetPos(0); - - TimeStepType inputTimeSteps = m_InputWorldTimeGeometry->CountTimeSteps(); - const TimeBounds& timeBounds = m_InputWorldTimeGeometry->GetTimeBounds(); - m_Time->SetSteps(inputTimeSteps); - m_Time->SetPos(0); - m_Time->SetRange(timeBounds[0], timeBounds[1]); - - currentTimeStep = this->GetTime()->GetPos(); - assert(m_InputWorldTimeGeometry->GetGeometryForTimeStep(currentTimeStep).IsNotNull()); + m_Stepper->SetSteps(slicedWorldGeometry->GetSlices()); + m_Stepper->SetPos(0); + const TimeStepType inputTimeSteps = m_InputWorldTimeGeometry->CountTimeSteps(); // create new time geometry and initialize it according to the type of the 'm_InputWorldTimeGeometry' // the created world geometry will either have equidistant timesteps (ProportionalTimeGeometry) // or individual time bounds for each timestep (ArbitraryTimeGeometry) m_CreatedWorldGeometry = mitk::TimeGeometry::Pointer(); if (nullptr != dynamic_cast(m_InputWorldTimeGeometry.GetPointer())) { - const TimePointType minimumTimePoint = m_InputWorldTimeGeometry->TimeStepToTimePoint(currentTimeStep); + const TimePointType minimumTimePoint = m_InputWorldTimeGeometry->TimeStepToTimePoint(0); const TimePointType stepDuration = - m_InputWorldTimeGeometry->TimeStepToTimePoint(currentTimeStep + 1) - minimumTimePoint; + m_InputWorldTimeGeometry->TimeStepToTimePoint(1) - minimumTimePoint; auto createdTimeGeometry = ProportionalTimeGeometry::New(); createdTimeGeometry->Initialize(slicedWorldGeometry, inputTimeSteps); createdTimeGeometry->SetFirstTimePoint(minimumTimePoint); createdTimeGeometry->SetStepDuration(stepDuration); m_CreatedWorldGeometry = createdTimeGeometry; } else { auto createdTimeGeometry = mitk::ArbitraryTimeGeometry::New(); createdTimeGeometry->ReserveSpaceForGeometries(inputTimeSteps); const BaseGeometry::Pointer clonedGeometry = slicedWorldGeometry->Clone(); for (TimeStepType i = 0; i < inputTimeSteps; ++i) { const auto bounds = m_InputWorldTimeGeometry->GetTimeBounds(i); createdTimeGeometry->AppendNewTimeStep(clonedGeometry, bounds[0], bounds[1]); } createdTimeGeometry->Update(); m_CreatedWorldGeometry = createdTimeGeometry; } } } // namespace mitk diff --git a/Modules/Core/src/Controllers/mitkSliceNavigationHelper.cpp b/Modules/Core/src/Controllers/mitkSliceNavigationHelper.cpp index 0dc248112a..54eef948c8 100644 --- a/Modules/Core/src/Controllers/mitkSliceNavigationHelper.cpp +++ b/Modules/Core/src/Controllers/mitkSliceNavigationHelper.cpp @@ -1,144 +1,144 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkSliceNavigationHelper.h" #include #include #include #include #include -#include +#include unsigned int mitk::SliceNavigationHelper::SelectSliceByPoint(const TimeGeometry* timeGeometry, const Point3D& point) { int selectedSlice = -1; if (nullptr == timeGeometry) { return selectedSlice; } // get the BaseGeometry of the selected time point - auto selectedTimePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); - auto currentGeometry = timeGeometry->GetGeometryForTimePoint(selectedTimePoint); + const auto selectedTimePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); + const auto currentGeometry = timeGeometry->GetGeometryForTimePoint(selectedTimePoint); if (nullptr == currentGeometry) { // time point not valid for the ime geometry mitkThrow() << "Cannot extract a base geometry. A time point is selected that is not covered by" << "the given time geometry. Selected time point: " << selectedTimePoint; } const auto* slicedGeometry = dynamic_cast(currentGeometry.GetPointer()); if (nullptr == slicedGeometry) { return selectedSlice; } double bestDistance = itk::NumericTraits::max(); if (slicedGeometry->GetEvenlySpaced()) { PlaneGeometry* plane = slicedGeometry->GetPlaneGeometry(0); const Vector3D& direction = slicedGeometry->GetDirectionVector(); Point3D projectedPoint; plane->Project(point, projectedPoint); // check whether the point is somewhere within the slice stack volume if (direction[0] * (point[0] - projectedPoint[0]) + direction[1] * (point[1] - projectedPoint[1]) + direction[2] * (point[2] - projectedPoint[2]) >= 0) { selectedSlice = static_cast(plane->Distance(point) / slicedGeometry->GetSpacing()[2] + 0.5); } } else { - int numberOfSlices = slicedGeometry->GetSlices(); + const int numberOfSlices = slicedGeometry->GetSlices(); Point3D projectedPoint; for (int slice = 0; slice < numberOfSlices; ++slice) { slicedGeometry->GetPlaneGeometry(slice)->Project(point, projectedPoint); const Vector3D distance = projectedPoint - point; ScalarType currentDistance = distance.GetSquaredNorm(); if (currentDistance < bestDistance) { bestDistance = currentDistance; selectedSlice = slice; } } } if (selectedSlice < 0) { selectedSlice = 0; // do not allow negative slices } return selectedSlice; } mitk::TimeGeometry::Pointer mitk::SliceNavigationHelper::CreateOrientedTimeGeometry(const TimeGeometry* timeGeometry, AnatomicalPlane orientation, bool top, bool frontside, bool rotated) { if (nullptr == timeGeometry) { return nullptr; } // initialize the viewplane SlicedGeometry3D::Pointer slicedGeometry; BaseGeometry::ConstPointer currentGeometry; // get the BaseGeometry of the selected time point - auto selectedTimePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); + const auto selectedTimePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); currentGeometry = timeGeometry->GetGeometryForTimePoint(selectedTimePoint); if(nullptr == currentGeometry) { // time point not valid for the time geometry mitkThrow() << "Cannot extract a base geometry. A time point is selected that is not covered by" << "the given time geometry. Selected time point: " << selectedTimePoint; } slicedGeometry = SlicedGeometry3D::New(); slicedGeometry->InitializePlanes(currentGeometry, orientation, top, frontside, rotated); // use the existing time geometry but replace all time steps with the newly created // sliced geometry (base geometry), initialized to the desired plane orientation auto createdTimeGeometry = timeGeometry->Clone(); createdTimeGeometry->ReplaceTimeStepGeometries(slicedGeometry); return createdTimeGeometry; } mitk::PlaneGeometry* mitk::SliceNavigationHelper::GetCurrentPlaneGeometry(const TimeGeometry* timeGeometry, TimePointType timePoint, unsigned int slicePosition) { if (nullptr == timeGeometry) { return nullptr; } const auto* slicedGeometry = dynamic_cast(timeGeometry->GetGeometryForTimePoint(timePoint).GetPointer()); if (nullptr == slicedGeometry) { // time point not valid for the time geometry mitkThrow() << "Cannot extract a sliced geometry. A time point is selected that is not covered by" << "the given time geometry. Selected time point: " << timePoint; } return slicedGeometry->GetPlaneGeometry(slicePosition); } diff --git a/Modules/Core/src/Controllers/mitkTimeNavigationController.cpp b/Modules/Core/src/Controllers/mitkTimeNavigationController.cpp new file mode 100644 index 0000000000..4766eb9732 --- /dev/null +++ b/Modules/Core/src/Controllers/mitkTimeNavigationController.cpp @@ -0,0 +1,129 @@ +/*============================================================================ + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center (DKFZ) +All rights reserved. + +Use of this source code is governed by a 3-clause BSD license that can be +found in the LICENSE file. + +============================================================================*/ + +#include + +#include +#include + + mitk::TimeNavigationController::TimeNavigationController() + : BaseController() + , m_InputWorldTimeGeometry(mitk::TimeGeometry::ConstPointer()) + , m_BlockUpdate(false) +{ + typedef itk::SimpleMemberCommand SNCCommandType; + SNCCommandType::Pointer timeStepperChangedCommand; + + timeStepperChangedCommand = SNCCommandType::New(); + timeStepperChangedCommand->SetCallbackFunction(this, &TimeNavigationController::SendTime); + m_Stepper->AddObserver(itk::ModifiedEvent(), timeStepperChangedCommand); + m_Stepper->SetUnitName("ms"); +} + +mitk::TimeNavigationController::~TimeNavigationController() {} + +void mitk::TimeNavigationController::SetInputWorldTimeGeometry(const TimeGeometry* geometry) +{ + if (geometry != nullptr) + { + if (geometry->GetBoundingBoxInWorld()->GetDiagonalLength2() < eps) + { + itkWarningMacro("setting an empty bounding-box"); + geometry = nullptr; + } + } + if (m_InputWorldTimeGeometry != geometry) + { + m_InputWorldTimeGeometry = geometry; + this->Modified(); + } +} + +void mitk::TimeNavigationController::Update() +{ + if (m_BlockUpdate) + { + return; + } + + if (m_InputWorldTimeGeometry.IsNull()) + { + return; + } + + if (0 == m_InputWorldTimeGeometry->CountTimeSteps()) + { + return; + } + + m_BlockUpdate = true; + + if (m_LastUpdateTime < m_InputWorldTimeGeometry->GetMTime()) + { + Modified(); + } + + if (m_LastUpdateTime < GetMTime()) + { + m_LastUpdateTime = GetMTime(); + + TimeStepType inputTimeSteps = m_InputWorldTimeGeometry->CountTimeSteps(); + const TimeBounds &timeBounds = m_InputWorldTimeGeometry->GetTimeBounds(); + m_Stepper->SetSteps(inputTimeSteps); + m_Stepper->SetPos(0); + m_Stepper->SetRange(timeBounds[0], timeBounds[1]); + } + + // unblock update; we may do this now, because if m_BlockUpdate was already + // true before this method was entered, then we will never come here. + m_BlockUpdate = false; + + // Send the time. Do this even if nothing was changed, because maybe + // Update() was only called to re-send the old time data. + this->SendTime(); +} + +void mitk::TimeNavigationController::SendTime() +{ + if (!m_BlockUpdate) + { + if (m_InputWorldTimeGeometry.IsNotNull()) + { + this->InvokeEvent(TimeEvent(m_Stepper->GetPos())); + RenderingManager::GetInstance()->RequestUpdateAll(); + } + } +} + +mitk::TimeStepType mitk::TimeNavigationController::GetSelectedTimeStep() const +{ + return m_Stepper->GetPos(); +} + +mitk::TimePointType mitk::TimeNavigationController::GetSelectedTimePoint() const +{ + const auto timeStep = this->GetSelectedTimeStep(); + + if (m_InputWorldTimeGeometry.IsNull()) + { + return 0.0; + } + + if (!m_InputWorldTimeGeometry->IsValidTimeStep(timeStep)) + { + mitkThrow() << "SliceNavigationController is in an invalid state. It has a time step" + << "selected that is not covered by its time geometry. Selected time step: " << timeStep + << "; TimeGeometry steps count: " << m_InputWorldTimeGeometry->CountTimeSteps(); + } + + return m_InputWorldTimeGeometry->TimeStepToTimePoint(timeStep); +} diff --git a/Modules/Core/src/DataManagement/mitkSlicedGeometry3D.cpp b/Modules/Core/src/DataManagement/mitkSlicedGeometry3D.cpp index be03c44fd6..6e23ef32d9 100644 --- a/Modules/Core/src/DataManagement/mitkSlicedGeometry3D.cpp +++ b/Modules/Core/src/DataManagement/mitkSlicedGeometry3D.cpp @@ -1,962 +1,962 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include #include "mitkSlicedGeometry3D.h" #include "mitkAbstractTransformGeometry.h" #include "mitkApplyTransformMatrixOperation.h" #include "mitkInteractionConst.h" #include "mitkPlaneGeometry.h" #include "mitkPlaneOperation.h" #include "mitkRestorePlanePositionOperation.h" #include "mitkRotationOperation.h" #include "mitkSliceNavigationController.h" const mitk::ScalarType PI = 3.14159265359; mitk::SlicedGeometry3D::SlicedGeometry3D() : m_EvenlySpaced(true), m_Slices(0), m_ReferenceGeometry(nullptr), m_SliceNavigationController(nullptr) { m_DirectionVector.Fill(0); this->InitializeSlicedGeometry(m_Slices); } mitk::SlicedGeometry3D::SlicedGeometry3D(const SlicedGeometry3D &other) : Superclass(other), m_EvenlySpaced(other.m_EvenlySpaced), m_Slices(other.m_Slices), m_ReferenceGeometry(other.m_ReferenceGeometry), m_SliceNavigationController(other.m_SliceNavigationController) { m_DirectionVector.Fill(0); SetSpacing(other.GetSpacing()); SetDirectionVector(other.GetDirectionVector()); if (m_EvenlySpaced) { assert(!other.m_PlaneGeometries.empty() && "This may happen when you use one of the old Initialize methods, which had a bool parameter that is implicitly casted to the number of slices now."); PlaneGeometry::Pointer geometry = other.m_PlaneGeometries[0]->Clone(); assert(geometry.IsNotNull()); SetPlaneGeometry(geometry, 0); } else { unsigned int s; for (s = 0; s < other.m_Slices; ++s) { if (other.m_PlaneGeometries[s].IsNull()) { assert(other.m_EvenlySpaced); m_PlaneGeometries[s] = nullptr; } else { PlaneGeometry *geometry2D = other.m_PlaneGeometries[s]->Clone(); assert(geometry2D != nullptr); SetPlaneGeometry(geometry2D, s); } } } } mitk::SlicedGeometry3D::~SlicedGeometry3D() { } mitk::PlaneGeometry *mitk::SlicedGeometry3D::GetPlaneGeometry(int s) const { mitk::PlaneGeometry::Pointer geometry2D = nullptr; if (this->IsValidSlice(s)) { geometry2D = m_PlaneGeometries[s]; // If (a) m_EvenlySpaced==true, (b) we don't have a PlaneGeometry stored // for the requested slice, and (c) the first slice (s=0) // is a PlaneGeometry instance, then we calculate the geometry of the // requested as the plane of the first slice shifted by m_Spacing[2]*s // in the direction of m_DirectionVector. if ((m_EvenlySpaced) && (geometry2D.IsNull())) { PlaneGeometry *firstSlice = m_PlaneGeometries[0]; if (firstSlice != nullptr && dynamic_cast(m_PlaneGeometries[0].GetPointer()) == nullptr) { if ((m_DirectionVector[0] == 0.0) && (m_DirectionVector[1] == 0.0) && (m_DirectionVector[2] == 0.0)) { m_DirectionVector = firstSlice->GetNormal(); m_DirectionVector.Normalize(); } Vector3D direction; direction = m_DirectionVector * this->GetSpacing()[2]; mitk::PlaneGeometry::Pointer requestedslice; requestedslice = static_cast(firstSlice->Clone().GetPointer()); requestedslice->SetOrigin(requestedslice->GetOrigin() + direction * s); geometry2D = requestedslice; m_PlaneGeometries[s] = geometry2D; } } return geometry2D; } else { return nullptr; } } const mitk::BoundingBox *mitk::SlicedGeometry3D::GetBoundingBox() const { assert(this->IsBoundingBoxNull() == false); return Superclass::GetBoundingBox(); } bool mitk::SlicedGeometry3D::SetPlaneGeometry(mitk::PlaneGeometry *geometry2D, int s) { if (this->IsValidSlice(s)) { m_PlaneGeometries[s] = geometry2D; m_PlaneGeometries[s]->SetReferenceGeometry(m_ReferenceGeometry); return true; } return false; } void mitk::SlicedGeometry3D::InitializeSlicedGeometry(unsigned int slices) { Superclass::Initialize(); m_Slices = slices; PlaneGeometry::Pointer gnull = nullptr; m_PlaneGeometries.assign(m_Slices, gnull); Vector3D spacing; spacing.Fill(1.0); this->SetSpacing(spacing); m_DirectionVector.Fill(0); } void mitk::SlicedGeometry3D::InitializeEvenlySpaced(mitk::PlaneGeometry *geometry2D, unsigned int slices) { assert(geometry2D != nullptr); this->InitializeEvenlySpaced(geometry2D, geometry2D->GetExtentInMM(2) / geometry2D->GetExtent(2), slices); } void mitk::SlicedGeometry3D::InitializeEvenlySpaced(mitk::PlaneGeometry *geometry2D, mitk::ScalarType zSpacing, unsigned int slices) { assert(geometry2D != nullptr); assert(geometry2D->GetExtent(0) > 0); assert(geometry2D->GetExtent(1) > 0); geometry2D->Register(); Superclass::Initialize(); m_Slices = slices; BoundingBox::BoundsArrayType bounds = geometry2D->GetBounds(); bounds[4] = 0; bounds[5] = slices; // clear and reserve PlaneGeometry::Pointer gnull = nullptr; m_PlaneGeometries.assign(m_Slices, gnull); Vector3D directionVector = geometry2D->GetAxisVector(2); directionVector.Normalize(); directionVector *= zSpacing; // Normally we should use the following four lines to create a copy of // the transform contained in geometry2D, because it may not be changed // by us. But we know that SetSpacing creates a new transform without // changing the old (coming from geometry2D), so we can use the fifth // line instead. We check this at (**). // // AffineTransform3D::Pointer transform = AffineTransform3D::New(); // transform->SetMatrix(geometry2D->GetIndexToWorldTransform()->GetMatrix()); // transform->SetOffset(geometry2D->GetIndexToWorldTransform()->GetOffset()); // SetIndexToWorldTransform(transform); this->SetIndexToWorldTransform(geometry2D->GetIndexToWorldTransform()); mitk::Vector3D spacing; FillVector3D(spacing, geometry2D->GetExtentInMM(0) / bounds[1], geometry2D->GetExtentInMM(1) / bounds[3], zSpacing); this->SetDirectionVector(directionVector); this->SetBounds(bounds); this->SetPlaneGeometry(geometry2D, 0); this->SetSpacing(spacing, true); this->SetEvenlySpaced(); // this->SetTimeBounds( geometry2D->GetTimeBounds() ); assert(this->GetIndexToWorldTransform() != geometry2D->GetIndexToWorldTransform()); // (**) see above. this->SetFrameOfReferenceID(geometry2D->GetFrameOfReferenceID()); this->SetImageGeometry(geometry2D->GetImageGeometry()); geometry2D->UnRegister(); } void mitk::SlicedGeometry3D::InitializePlanes(const mitk::BaseGeometry *geometry3D, mitk::AnatomicalPlane orientation, bool top, bool frontside, bool rotated) { m_ReferenceGeometry = geometry3D; PlaneGeometry::Pointer planeGeometry = mitk::PlaneGeometry::New(); planeGeometry->InitializeStandardPlane(geometry3D, top, orientation, frontside, rotated); int worldAxis = orientation == AnatomicalPlane::Sagittal ? 0 : orientation == AnatomicalPlane::Coronal ? 1 : 2; // Inspired by: // http://www.na-mic.org/Wiki/index.php/Coordinate_System_Conversion_Between_ITK_and_Slicer3 mitk::AffineTransform3D::MatrixType matrix = geometry3D->GetIndexToWorldTransform()->GetMatrix(); matrix.GetVnlMatrix().normalize_columns(); mitk::AffineTransform3D::MatrixType::InternalMatrixType inverseMatrix = matrix.GetTranspose(); int dominantAxis = planeGeometry->CalculateDominantAxes(inverseMatrix).at(worldAxis); ScalarType viewSpacing = geometry3D->GetSpacing()[dominantAxis]; /// Although the double value returned by GetExtent() holds a round number, /// you need to add 0.5 to safely convert it to unsigned it. I have seen a /// case when the result was less by one without this. auto slices = static_cast(geometry3D->GetExtent(dominantAxis) + 0.5); if ( slices == 0 && geometry3D->GetExtent(dominantAxis) > 0) { // require at least one slice if there is _some_ extent slices = 1; } #ifndef NDEBUG int upDirection = itk::Function::Sign(inverseMatrix[dominantAxis][worldAxis]); /// The normal vector of an imaginary plane that points from the world origin (bottom left back /// corner or the world, with the lowest physical coordinates) towards the inside of the volume, /// along the renderer axis. Length is the slice thickness. Vector3D worldPlaneNormal = inverseMatrix.get_row(dominantAxis) * (upDirection * viewSpacing); /// The normal of the standard plane geometry just created. Vector3D standardPlaneNormal = planeGeometry->GetNormal(); /// The standard plane must be parallel to the 'world plane'. The normal of the standard plane /// must point against the world plane if and only if 'top' is 'false'. The length of the /// standard plane normal must be equal to the slice thickness. assert((standardPlaneNormal - (top ? 1.0 : -1.0) * worldPlaneNormal).GetSquaredNorm() < 0.000001); #endif this->InitializeEvenlySpaced(planeGeometry, viewSpacing, slices); #ifndef NDEBUG /// The standard plane normal and the z axis vector of the sliced geometry must point in /// the same direction. Vector3D zAxisVector = this->GetAxisVector(2); Vector3D upscaledStandardPlaneNormal = standardPlaneNormal; upscaledStandardPlaneNormal *= slices; assert((zAxisVector - upscaledStandardPlaneNormal).GetSquaredNorm() < 0.000001); /// You can use this test is to check the handedness of the coordinate system of the current /// geometry. In principle, you can use either left- or right-handed coordinate systems, but /// you normally want it to be consistent, that is the handedness should be the same across /// the renderers of the same viewer. // ScalarType det = vnl_det(this->GetIndexToWorldTransform()->GetMatrix().GetVnlMatrix()); // MITK_DEBUG << "world axis: " << worldAxis << (det > 0 ? " ; right-handed" : " ; left-handed"); #endif } void mitk::SlicedGeometry3D::ReinitializePlanes(const Point3D ¢er, const Point3D &referencePoint) { // Need a reference frame to align the rotated planes if (!m_ReferenceGeometry) { return; } // Get first plane of plane stack PlaneGeometry *firstPlane = m_PlaneGeometries[0]; // If plane stack is empty, exit if (!firstPlane || dynamic_cast(firstPlane)) { return; } // Calculate the "directed" spacing when taking the plane (defined by its axes // vectors and normal) as the reference coordinate frame. // // This is done by calculating the radius of the ellipsoid defined by the // original volume spacing axes, in the direction of the respective axis of the // reference frame. mitk::Vector3D axis0 = firstPlane->GetAxisVector(0); mitk::Vector3D axis1 = firstPlane->GetAxisVector(1); mitk::Vector3D normal = firstPlane->GetNormal(); normal.Normalize(); Vector3D spacing; spacing[0] = this->CalculateSpacing(axis0); spacing[1] = this->CalculateSpacing(axis1); spacing[2] = this->CalculateSpacing(normal); Superclass::SetSpacing(spacing); // Now we need to calculate the number of slices in the plane's normal // direction, so that the entire volume is covered. This is done by first // calculating the dot product between the volume diagonal (the maximum // distance inside the volume) and the normal, and dividing this value by // the directed spacing calculated above. ScalarType directedExtent = std::abs(m_ReferenceGeometry->GetExtentInMM(0) * normal[0]) + std::abs(m_ReferenceGeometry->GetExtentInMM(1) * normal[1]) + std::abs(m_ReferenceGeometry->GetExtentInMM(2) * normal[2]); if (directedExtent >= spacing[2]) { m_Slices = static_cast(directedExtent / spacing[2] + 0.5); } else { m_Slices = 1; } // The origin of our "first plane" needs to be adapted to this new extent. // To achieve this, we first calculate the current distance to the volume's // center, and then shift the origin in the direction of the normal by the // difference between this distance and half of the new extent. double centerOfRotationDistance = firstPlane->SignedDistanceFromPlane(center); if (centerOfRotationDistance > 0) { firstPlane->SetOrigin(firstPlane->GetOrigin() + normal * (centerOfRotationDistance - directedExtent / 2.0)); m_DirectionVector = normal; } else { firstPlane->SetOrigin(firstPlane->GetOrigin() + normal * (directedExtent / 2.0 + centerOfRotationDistance)); m_DirectionVector = -normal; } // Now we adjust this distance according with respect to the given reference // point: we need to make sure that the point is touched by one slice of the // new slice stack. double referencePointDistance = firstPlane->SignedDistanceFromPlane(referencePoint); auto referencePointSlice = static_cast(referencePointDistance / spacing[2]); double alignmentValue = referencePointDistance / spacing[2] - referencePointSlice; firstPlane->SetOrigin(firstPlane->GetOrigin() + normal * alignmentValue * spacing[2]); // Finally, we can clear the previous geometry stack and initialize it with // our re-initialized "first plane". m_PlaneGeometries.assign(m_Slices, PlaneGeometry::Pointer(nullptr)); if (m_Slices > 0) { m_PlaneGeometries[0] = firstPlane; } // Reinitialize SNC with new number of slices - m_SliceNavigationController->GetSlice()->SetSteps(m_Slices); + m_SliceNavigationController->GetStepper()->SetSteps(m_Slices); this->Modified(); } double mitk::SlicedGeometry3D::CalculateSpacing(const mitk::Vector3D &d) const { // Need the spacing of the underlying dataset / geometry if (!m_ReferenceGeometry) { return 1.0; } const mitk::Vector3D &spacing = m_ReferenceGeometry->GetSpacing(); return SlicedGeometry3D::CalculateSpacing(spacing, d); } double mitk::SlicedGeometry3D::CalculateSpacing(const mitk::Vector3D &spacing, const mitk::Vector3D &d) { // The following can be derived from the ellipsoid equation // // 1 = x^2/a^2 + y^2/b^2 + z^2/c^2 // // where (a,b,c) = spacing of original volume (ellipsoid radii) // and (x,y,z) = scaled coordinates of vector d (according to ellipsoid) // double scaling = d[0] * d[0] / (spacing[0] * spacing[0]) + d[1] * d[1] / (spacing[1] * spacing[1]) + d[2] * d[2] / (spacing[2] * spacing[2]); scaling = sqrt(scaling); return (sqrt(d[0] * d[0] + d[1] * d[1] + d[2] * d[2]) / scaling); } mitk::Vector3D mitk::SlicedGeometry3D::AdjustNormal(const mitk::Vector3D &normal) const { TransformType::Pointer inverse = TransformType::New(); m_ReferenceGeometry->GetIndexToWorldTransform()->GetInverse(inverse); Vector3D transformedNormal = inverse->TransformVector(normal); transformedNormal.Normalize(); return transformedNormal; } void mitk::SlicedGeometry3D::SetImageGeometry(const bool isAnImageGeometry) { Superclass::SetImageGeometry(isAnImageGeometry); unsigned int s; for (s = 0; s < m_Slices; ++s) { mitk::BaseGeometry *geometry = m_PlaneGeometries[s]; if (geometry != nullptr) { geometry->SetImageGeometry(isAnImageGeometry); } } } void mitk::SlicedGeometry3D::ChangeImageGeometryConsideringOriginOffset(const bool isAnImageGeometry) { unsigned int s; for (s = 0; s < m_Slices; ++s) { mitk::BaseGeometry *geometry = m_PlaneGeometries[s]; if (geometry != nullptr) { geometry->ChangeImageGeometryConsideringOriginOffset(isAnImageGeometry); } } Superclass::ChangeImageGeometryConsideringOriginOffset(isAnImageGeometry); } bool mitk::SlicedGeometry3D::IsValidSlice(int s) const { return ((s >= 0) && (s < (int)m_Slices)); } const mitk::BaseGeometry *mitk::SlicedGeometry3D::GetReferenceGeometry() const { return m_ReferenceGeometry; } void mitk::SlicedGeometry3D::SetReferenceGeometry(const BaseGeometry *referenceGeometry) { m_ReferenceGeometry = referenceGeometry; std::vector::iterator it; for (it = m_PlaneGeometries.begin(); it != m_PlaneGeometries.end(); ++it) { (*it)->SetReferenceGeometry(referenceGeometry); } } bool mitk::SlicedGeometry3D::HasReferenceGeometry() const { return ( m_ReferenceGeometry != nullptr ); } void mitk::SlicedGeometry3D::PreSetSpacing(const mitk::Vector3D &aSpacing) { bool hasEvenlySpacedPlaneGeometry = false; mitk::Point3D origin; mitk::Vector3D rightDV, bottomDV; BoundingBox::BoundsArrayType bounds; // Check for valid spacing if (!(aSpacing[0] > 0 && aSpacing[1] > 0 && aSpacing[2] > 0)) { mitkThrow() << "You try to set a spacing with at least one element equal or " "smaller to \"0\". This might lead to a crash during rendering. Please double" " check your data!"; } // In case of evenly-spaced data: re-initialize instances of PlaneGeometry, // since the spacing influences them if ((m_EvenlySpaced) && (m_PlaneGeometries.size() > 0)) { const PlaneGeometry *planeGeometry = m_PlaneGeometries[0]; if (planeGeometry && !dynamic_cast(planeGeometry)) { this->WorldToIndex(planeGeometry->GetOrigin(), origin); this->WorldToIndex(planeGeometry->GetAxisVector(0), rightDV); this->WorldToIndex(planeGeometry->GetAxisVector(1), bottomDV); bounds = planeGeometry->GetBounds(); hasEvenlySpacedPlaneGeometry = true; } } BaseGeometry::_SetSpacing(aSpacing); mitk::PlaneGeometry::Pointer firstGeometry; // In case of evenly-spaced data: re-initialize instances of PlaneGeometry, // since the spacing influences them if (hasEvenlySpacedPlaneGeometry) { // create planeGeometry according to new spacing this->IndexToWorld(origin, origin); this->IndexToWorld(rightDV, rightDV); this->IndexToWorld(bottomDV, bottomDV); mitk::PlaneGeometry::Pointer planeGeometry = mitk::PlaneGeometry::New(); planeGeometry->SetImageGeometry(this->GetImageGeometry()); planeGeometry->SetReferenceGeometry(m_ReferenceGeometry); // Store spacing, as Initialize... needs a pointer mitk::Vector3D lokalSpacing = this->GetSpacing(); planeGeometry->InitializeStandardPlane(rightDV.GetVnlVector(), bottomDV.GetVnlVector(), &lokalSpacing); planeGeometry->SetOrigin(origin); planeGeometry->SetBounds(bounds); firstGeometry = planeGeometry; } else if ((m_EvenlySpaced) && (m_PlaneGeometries.size() > 0)) { firstGeometry = m_PlaneGeometries[0].GetPointer(); } // clear and reserve PlaneGeometry::Pointer gnull = nullptr; m_PlaneGeometries.assign(m_Slices, gnull); if (m_Slices > 0) { m_PlaneGeometries[0] = firstGeometry; } this->Modified(); } void mitk::SlicedGeometry3D::SetSliceNavigationController(SliceNavigationController *snc) { m_SliceNavigationController = snc; } mitk::SliceNavigationController *mitk::SlicedGeometry3D::GetSliceNavigationController() { return m_SliceNavigationController; } void mitk::SlicedGeometry3D::SetEvenlySpaced(bool on) { if (m_EvenlySpaced != on) { m_EvenlySpaced = on; this->Modified(); } } void mitk::SlicedGeometry3D::SetDirectionVector(const mitk::Vector3D &directionVector) { Vector3D newDir = directionVector; newDir.Normalize(); if (newDir != m_DirectionVector) { m_DirectionVector = newDir; this->Modified(); } } // void // mitk::SlicedGeometry3D::SetTimeBounds( const mitk::TimeBounds& timebounds ) //{ // Superclass::SetTimeBounds( timebounds ); // // unsigned int s; // for ( s = 0; s < m_Slices; ++s ) // { // if(m_Geometry2Ds[s].IsNotNull()) // { // m_Geometry2Ds[s]->SetTimeBounds( timebounds ); // } // } // m_TimeBounds = timebounds; //} itk::LightObject::Pointer mitk::SlicedGeometry3D::InternalClone() const { Self::Pointer newGeometry = new SlicedGeometry3D(*this); newGeometry->UnRegister(); return newGeometry.GetPointer(); } void mitk::SlicedGeometry3D::PrintSelf(std::ostream &os, itk::Indent indent) const { Superclass::PrintSelf(os, indent); os << indent << " EvenlySpaced: " << m_EvenlySpaced << std::endl; if (m_EvenlySpaced) { os << indent << " DirectionVector: " << m_DirectionVector << std::endl; } os << indent << " Slices: " << m_Slices << std::endl; os << std::endl; os << indent << " GetPlaneGeometry(0): "; if (this->GetPlaneGeometry(0) == nullptr) { os << "nullptr" << std::endl; } else { this->GetPlaneGeometry(0)->Print(os, indent); } } void mitk::SlicedGeometry3D::ExecuteOperation(Operation *operation) { PlaneGeometry::Pointer geometry2D; ApplyTransformMatrixOperation *applyMatrixOp; Point3D center; switch (operation->GetOperationType()) { case OpNOTHING: break; case OpROTATE: if (m_EvenlySpaced) { // Need a reference frame to align the rotation if (m_ReferenceGeometry) { // Clear all generated geometries and then rotate only the first slice. // The other slices will be re-generated on demand // Save first slice PlaneGeometry::Pointer geometry2D = m_PlaneGeometries[0]; auto *rotOp = dynamic_cast(operation); // Generate a RotationOperation using the dataset center instead of // the supplied rotation center. This is necessary so that the rotated // zero-plane does not shift away. The supplied center is instead used // to adjust the slice stack afterwards. Point3D center = m_ReferenceGeometry->GetCenter(); RotationOperation centeredRotation( rotOp->GetOperationType(), center, rotOp->GetVectorOfRotation(), rotOp->GetAngleOfRotation()); // Rotate first slice geometry2D->ExecuteOperation(¢eredRotation); // Clear the slice stack and adjust it according to the center of // the dataset and the supplied rotation center (see documentation of // ReinitializePlanes) this->ReinitializePlanes(center, rotOp->GetCenterOfRotation()); geometry2D->SetSpacing(this->GetSpacing()); if (m_SliceNavigationController) { m_SliceNavigationController->SelectSliceByPoint(rotOp->GetCenterOfRotation()); m_SliceNavigationController->AdjustSliceStepperRange(); } BaseGeometry::ExecuteOperation(¢eredRotation); } else { // we also have to consider the case, that there is no reference geometry available. if (m_PlaneGeometries.size() > 0) { // Reach through to all slices in my container for (auto iter = m_PlaneGeometries.begin(); iter != m_PlaneGeometries.end(); ++iter) { // Test for empty slices, which can happen if evenly spaced geometry if ((*iter).IsNotNull()) { (*iter)->ExecuteOperation(operation); } } // rotate overall geometry auto *rotOp = dynamic_cast(operation); BaseGeometry::ExecuteOperation(rotOp); } } } else { // Reach through to all slices for (auto iter = m_PlaneGeometries.begin(); iter != m_PlaneGeometries.end(); ++iter) { (*iter)->ExecuteOperation(operation); } } break; case OpORIENT: if (m_EvenlySpaced) { // get operation data auto *planeOp = dynamic_cast(operation); // Get first slice PlaneGeometry::Pointer planeGeometry = m_PlaneGeometries[0]; // Need a PlaneGeometry, a PlaneOperation and a reference frame to // carry out the re-orientation. If not all available, stop here if (!m_ReferenceGeometry || (!planeGeometry || dynamic_cast(planeGeometry.GetPointer())) || !planeOp) { break; } // General Behavior: // Clear all generated geometries and then rotate only the first slice. // The other slices will be re-generated on demand // // 1st Step: Reorient Normal Vector of first plane // Point3D center = planeOp->GetPoint(); // m_ReferenceGeometry->GetCenter(); mitk::Vector3D currentNormal = planeGeometry->GetNormal(); mitk::Vector3D newNormal; if (planeOp->AreAxisDefined()) { // If planeOp was defined by one centerpoint and two axis vectors newNormal = CrossProduct(planeOp->GetAxisVec0(), planeOp->GetAxisVec1()); } else { // If planeOp was defined by one centerpoint and one normal vector newNormal = planeOp->GetNormal(); } // Get Rotation axis und angle currentNormal.Normalize(); newNormal.Normalize(); ScalarType rotationAngle = angle(currentNormal.GetVnlVector(), newNormal.GetVnlVector()); rotationAngle *= 180.0 / vnl_math::pi; // from rad to deg Vector3D rotationAxis = itk::CrossProduct(currentNormal, newNormal); if (std::abs(rotationAngle - 180) < mitk::eps) { // current Normal and desired normal are not linear independent!!(e.g 1,0,0 and -1,0,0). // Rotation Axis should be ANY vector that is 90� to current Normal mitk::Vector3D helpNormal; helpNormal = currentNormal; helpNormal[0] += 1; helpNormal[1] -= 1; helpNormal[2] += 1; helpNormal.Normalize(); rotationAxis = itk::CrossProduct(helpNormal, currentNormal); } RotationOperation centeredRotation(mitk::OpROTATE, center, rotationAxis, rotationAngle); // Rotate first slice planeGeometry->ExecuteOperation(¢eredRotation); // Reinitialize planes and select slice, if my rotations are all done. if (!planeOp->AreAxisDefined()) { // Clear the slice stack and adjust it according to the center of // rotation and plane position (see documentation of ReinitializePlanes) this->ReinitializePlanes(center, planeOp->GetPoint()); planeGeometry->SetSpacing(this->GetSpacing()); if (m_SliceNavigationController) { m_SliceNavigationController->SelectSliceByPoint(planeOp->GetPoint()); m_SliceNavigationController->AdjustSliceStepperRange(); } } // Also apply rotation on the slicedGeometry - Geometry3D (Bounding geometry) BaseGeometry::ExecuteOperation(¢eredRotation); // // 2nd step. If axis vectors were defined, rotate the plane around its normal to fit these // if (planeOp->AreAxisDefined()) { mitk::Vector3D vecAxixNew = planeOp->GetAxisVec0(); vecAxixNew.Normalize(); mitk::Vector3D VecAxisCurr = planeGeometry->GetAxisVector(0); VecAxisCurr.Normalize(); ScalarType rotationAngle = angle(VecAxisCurr.GetVnlVector(), vecAxixNew.GetVnlVector()); rotationAngle = rotationAngle * 180 / PI; // Rad to Deg // we rotate around the normal of the plane, but we do not know, if we need to rotate clockwise // or anti-clockwise. So we rotate around the crossproduct of old and new Axisvector. // Since both axis vectors lie in the plane, the crossproduct is the planes normal or the negative planes // normal rotationAxis = itk::CrossProduct(VecAxisCurr, vecAxixNew); if (std::abs(rotationAngle - 180) < mitk::eps) { // current axisVec and desired axisVec are not linear independent!!(e.g 1,0,0 and -1,0,0). // Rotation Axis can be just plane Normal. (have to rotate by 180�) rotationAxis = newNormal; } // Perform Rotation mitk::RotationOperation op(mitk::OpROTATE, center, rotationAxis, rotationAngle); planeGeometry->ExecuteOperation(&op); // Apply changes on first slice to whole slice stack this->ReinitializePlanes(center, planeOp->GetPoint()); planeGeometry->SetSpacing(this->GetSpacing()); if (m_SliceNavigationController) { m_SliceNavigationController->SelectSliceByPoint(planeOp->GetPoint()); m_SliceNavigationController->AdjustSliceStepperRange(); } // Also apply rotation on the slicedGeometry - Geometry3D (Bounding geometry) BaseGeometry::ExecuteOperation(&op); } } else { // Reach through to all slices for (auto iter = m_PlaneGeometries.begin(); iter != m_PlaneGeometries.end(); ++iter) { (*iter)->ExecuteOperation(operation); } } break; case OpRESTOREPLANEPOSITION: if (m_EvenlySpaced) { // Save first slice PlaneGeometry::Pointer planeGeometry = m_PlaneGeometries[0]; auto *restorePlaneOp = dynamic_cast(operation); // Need a PlaneGeometry, a PlaneOperation and a reference frame to // carry out the re-orientation if (m_ReferenceGeometry && (planeGeometry && dynamic_cast(planeGeometry.GetPointer()) == nullptr) && restorePlaneOp) { // Clear all generated geometries and then rotate only the first slice. // The other slices will be re-generated on demand // Rotate first slice planeGeometry->ExecuteOperation(restorePlaneOp); m_DirectionVector = restorePlaneOp->GetDirectionVector(); double centerOfRotationDistance = planeGeometry->SignedDistanceFromPlane(m_ReferenceGeometry->GetCenter()); if (centerOfRotationDistance <= 0) { m_DirectionVector = -m_DirectionVector; } Vector3D spacing = restorePlaneOp->GetSpacing(); Superclass::SetSpacing(spacing); // /*Now we need to calculate the number of slices in the plane's normal // direction, so that the entire volume is covered. This is done by first // calculating the dot product between the volume diagonal (the maximum // distance inside the volume) and the normal, and dividing this value by // the directed spacing calculated above.*/ ScalarType directedExtent = std::abs(m_ReferenceGeometry->GetExtentInMM(0) * m_DirectionVector[0]) + std::abs(m_ReferenceGeometry->GetExtentInMM(1) * m_DirectionVector[1]) + std::abs(m_ReferenceGeometry->GetExtentInMM(2) * m_DirectionVector[2]); if (directedExtent >= spacing[2]) { m_Slices = static_cast(directedExtent / spacing[2] + 0.5); } else { m_Slices = 1; } m_PlaneGeometries.assign(m_Slices, PlaneGeometry::Pointer(nullptr)); if (m_Slices > 0) { m_PlaneGeometries[0] = planeGeometry; } - m_SliceNavigationController->GetSlice()->SetSteps(m_Slices); + m_SliceNavigationController->GetStepper()->SetSteps(m_Slices); this->Modified(); // End Reinitialization if (m_SliceNavigationController) { - m_SliceNavigationController->GetSlice()->SetPos(restorePlaneOp->GetPos()); + m_SliceNavigationController->GetStepper()->SetPos(restorePlaneOp->GetPos()); m_SliceNavigationController->AdjustSliceStepperRange(); } BaseGeometry::ExecuteOperation(restorePlaneOp); } } else { // Reach through to all slices for (auto iter = m_PlaneGeometries.begin(); iter != m_PlaneGeometries.end(); ++iter) { (*iter)->ExecuteOperation(operation); } } break; case OpAPPLYTRANSFORMMATRIX: // Clear all generated geometries and then transform only the first slice. // The other slices will be re-generated on demand // Save first slice geometry2D = m_PlaneGeometries[0]; applyMatrixOp = dynamic_cast(operation); // Apply transformation to first plane geometry2D->ExecuteOperation(applyMatrixOp); // Generate a ApplyTransformMatrixOperation using the dataset center instead of // the supplied rotation center. The supplied center is instead used to adjust the // slice stack afterwards (see OpROTATE). center = m_ReferenceGeometry->GetCenter(); // Clear the slice stack and adjust it according to the center of // the dataset and the supplied rotation center (see documentation of // ReinitializePlanes) this->ReinitializePlanes(center, applyMatrixOp->GetReferencePoint()); BaseGeometry::ExecuteOperation(applyMatrixOp); break; default: // let handle by base class if we don't do anything BaseGeometry::ExecuteOperation(operation); } this->Modified(); } diff --git a/Modules/Core/src/Interactions/mitkDisplayActionEventBroadcast.cpp b/Modules/Core/src/Interactions/mitkDisplayActionEventBroadcast.cpp index fd3cf979ef..e7718b3a4a 100644 --- a/Modules/Core/src/Interactions/mitkDisplayActionEventBroadcast.cpp +++ b/Modules/Core/src/Interactions/mitkDisplayActionEventBroadcast.cpp @@ -1,807 +1,808 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkDisplayActionEventBroadcast.h" // us #include "usGetModuleContext.h" #include "usModuleContext.h" // mitk core module #include #include #include #include #include #include +#include #include mitk::DisplayActionEventBroadcast::DisplayActionEventBroadcast() : m_AlwaysReact(false) , m_AutoRepeat(false) , m_IndexToSliceModifier(4) , m_InvertScrollDirection(false) , m_InvertZoomDirection(false) , m_ZoomFactor(2) , m_InvertMoveDirection(false) , m_InvertLevelWindowDirection(false) , m_LinkPlanes(true) { m_StartCoordinateInMM.Fill(0); m_LastDisplayCoordinate.Fill(0); m_CurrentDisplayCoordinate.Fill(0); // register the broadcast class (itself) as an interaction event observer via micro services us::ServiceProperties props; props["name"] = std::string("DisplayActionEventBroadcast"); m_ServiceRegistration = us::GetModuleContext()->RegisterService(this, props); } mitk::DisplayActionEventBroadcast::~DisplayActionEventBroadcast() { m_ServiceRegistration.Unregister(); } void mitk::DisplayActionEventBroadcast::Notify(InteractionEvent* interactionEvent, bool isHandled) { // the event is passed to the state machine interface to be handled if (!isHandled || m_AlwaysReact) { HandleEvent(interactionEvent, nullptr); } } void mitk::DisplayActionEventBroadcast::ConnectActionsAndFunctions() { CONNECT_CONDITION("check_position_event", CheckPositionEvent); CONNECT_CONDITION("check_can_rotate", CheckRotationPossible); CONNECT_CONDITION("check_can_swivel", CheckSwivelPossible); CONNECT_FUNCTION("init", Init); CONNECT_FUNCTION("move", Move); CONNECT_FUNCTION("zoom", Zoom); CONNECT_FUNCTION("scroll", Scroll); CONNECT_FUNCTION("ScrollOneUp", ScrollOneUp); CONNECT_FUNCTION("ScrollOneDown", ScrollOneDown); CONNECT_FUNCTION("levelWindow", AdjustLevelWindow); CONNECT_FUNCTION("setCrosshair", SetCrosshair); CONNECT_FUNCTION("startRotation", StartRotation); CONNECT_FUNCTION("endRotation", EndRotation); CONNECT_FUNCTION("rotate", Rotate); CONNECT_FUNCTION("swivel", Swivel); CONNECT_FUNCTION("IncreaseTimeStep", IncreaseTimeStep); CONNECT_FUNCTION("DecreaseTimeStep", DecreaseTimeStep); } void mitk::DisplayActionEventBroadcast::ConfigurationChanged() { PropertyList::Pointer properties = GetAttributes(); // alwaysReact std::string strAlwaysReact = ""; m_AlwaysReact = false; if (properties->GetStringProperty("alwaysReact", strAlwaysReact)) { if (strAlwaysReact == "true") { m_AlwaysReact = true; } } // auto repeat std::string strAutoRepeat = ""; m_AutoRepeat = false; if (properties->GetStringProperty("autoRepeat", strAutoRepeat)) { if (strAutoRepeat == "true") { m_AutoRepeat = true; } } // pixel movement for scrolling one slice std::string strPixelPerSlice = ""; m_IndexToSliceModifier = 4; if (properties->GetStringProperty("pixelPerSlice", strPixelPerSlice)) { m_IndexToSliceModifier = atoi(strPixelPerSlice.c_str()); } // scroll direction if (!properties->GetStringProperty("scrollDirection", m_ScrollDirection)) { m_ScrollDirection = "updown"; } m_InvertScrollDirection = GetBoolProperty(properties, "invertScrollDirection", false); // zoom direction if (!properties->GetStringProperty("zoomDirection", m_ZoomDirection)) { m_ZoomDirection = "updown"; } m_InvertZoomDirection = GetBoolProperty(properties, "invertZoomDirection", false); m_InvertMoveDirection = GetBoolProperty(properties, "invertMoveDirection", false); if (!properties->GetStringProperty("levelWindowDirection", m_LevelDirection)) { m_LevelDirection = "leftright"; } m_InvertLevelWindowDirection = GetBoolProperty(properties, "invertLevelWindowDirection", false); // coupled rotation std::string strCoupled = ""; m_LinkPlanes = false; if (properties->GetStringProperty("coupled", strCoupled)) { if (strCoupled == "true") { m_LinkPlanes = true; } } // zoom factor std::string strZoomFactor = ""; properties->GetStringProperty("zoomFactor", strZoomFactor); m_ZoomFactor = .05; if (atoi(strZoomFactor.c_str()) > 0) { m_ZoomFactor = 1.0 + (atoi(strZoomFactor.c_str()) / 100.0); } } bool mitk::DisplayActionEventBroadcast::FilterEvents(InteractionEvent* interactionEvent, DataNode * /*dataNode*/) { BaseRenderer* sendingRenderer = interactionEvent->GetSender(); if (nullptr == sendingRenderer) { return false; } if (BaseRenderer::Standard3D == sendingRenderer->GetMapperID()) { return false; } return true; } bool mitk::DisplayActionEventBroadcast::CheckPositionEvent(const InteractionEvent *interactionEvent) { const auto* positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) { return false; } return true; } bool mitk::DisplayActionEventBroadcast::CheckRotationPossible(const InteractionEvent *interactionEvent) { // Decide between moving and rotation slices. /* Detailed logic: 1. Find the SliceNavigationController that has sent the event: this one defines our rendering plane and will NOT be rotated. Needs not even be counted or checked. 2. Inspect every other SliceNavigationController - calculate the line intersection of this SliceNavigationController's plane with our rendering plane - if there is NO intersection, ignore and continue - IF there is an intersection - check the mouse cursor's distance from that line. 0. if the line is NOT near the cursor, remember the plane as "one of the other planes" (which can be rotated in "locked" mode) 1. on first line near the cursor, just remember this intersection line as THE other plane that we want to rotate 2. on every consecutive line near the cursor, check if the line is geometrically identical to the line that we want to rotate - if yes, we just push this line to the "other" lines and rotate it along - if no, then we have a situation where the mouse is near two other lines (e.g. crossing point) and don't want to rotate */ const auto* positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) { return false; } BaseRenderer* renderer = positionEvent->GetSender(); if (nullptr == renderer) { return false; } const PlaneGeometry* rendererWorldPlaneGeometry = renderer->GetCurrentWorldPlaneGeometry(); if (nullptr == rendererWorldPlaneGeometry) { return false; } Point3D position = positionEvent->GetPositionInWorld(); const auto spacing = rendererWorldPlaneGeometry->GetSpacing(); const PlaneGeometry *geometryToBeRotated = nullptr; // this one is under the mouse cursor const PlaneGeometry *anyOtherGeometry = nullptr; // this is also visible (for calculation of intersection ONLY) Line3D intersectionLineWithGeometryToBeRotated; bool hitMultipleLines(false); m_SNCsToBeRotated.clear(); const ScalarType threshholdDistancePixels = 12.0; auto allRenderWindows = RenderingManager::GetInstance()->GetAllRegisteredRenderWindows(); for (auto renderWindow : allRenderWindows) { SliceNavigationController* snc = BaseRenderer::GetInstance(renderWindow)->GetSliceNavigationController(); // If the mouse cursor is in 3D Renderwindow, do not check for intersecting planes. if (BaseRenderer::Standard3D == BaseRenderer::GetInstance(renderWindow)->GetMapperID()) { continue; } const PlaneGeometry* rendererPlaneGeometry = snc->GetCurrentPlaneGeometry(); if (nullptr == rendererPlaneGeometry) { continue; // ignore, we don't see a plane } // check if there is an intersection between rendered / clicked geometry and the one being analyzed Line3D intersectionLine; if (!rendererWorldPlaneGeometry->IntersectionLine(rendererPlaneGeometry, intersectionLine)) { continue; // we ignore this plane, it's parallel to our plane } // check distance from intersection line const double distanceFromIntersectionLine = intersectionLine.Distance(position) / spacing[static_cast(snc->GetDefaultViewDirection())]; // far away line, only remember for linked rotation if necessary if (distanceFromIntersectionLine > threshholdDistancePixels) { // we just take the last one, so overwrite each iteration (we just need some crossing point) // TODO what about multiple crossings? NOW we have undefined behavior / random crossing point is used anyOtherGeometry = rendererPlaneGeometry; if (m_LinkPlanes) { // if planes are linked, apply rotation to all planes m_SNCsToBeRotated.push_back(snc); } } else // close to cursor { if (nullptr == geometryToBeRotated) // first one close to the cursor { geometryToBeRotated = rendererPlaneGeometry; intersectionLineWithGeometryToBeRotated = intersectionLine; m_SNCsToBeRotated.push_back(snc); } else { // compare to the line defined by geometryToBeRotated: if identical, just rotate this otherRenderersRenderPlane // together with the primary one // if different, DON'T rotate if (intersectionLine.IsParallel(intersectionLineWithGeometryToBeRotated) && intersectionLine.Distance(intersectionLineWithGeometryToBeRotated.GetPoint1()) < eps) { m_SNCsToBeRotated.push_back(snc); } else { hitMultipleLines = true; } } } } bool moveSlices(true); if (geometryToBeRotated && anyOtherGeometry && rendererWorldPlaneGeometry && !hitMultipleLines) { // assure all three are valid, so calculation of center of rotation can be done moveSlices = false; } // question in state machine is: "rotate?" if (moveSlices) // i.e. NOT rotate { return false; } else { // we have enough information for rotation // remember where the last cursor position ON THE LINE has been observed m_LastCursorPosition = intersectionLineWithGeometryToBeRotated.Project(position); // find center of rotation by intersection with any of the OTHER lines if (anyOtherGeometry->IntersectionPoint(intersectionLineWithGeometryToBeRotated, m_CenterOfRotation)) { return true; } else { return false; } } return false; } bool mitk::DisplayActionEventBroadcast::CheckSwivelPossible(const InteractionEvent *interactionEvent) { // Decide between moving and rotation: if we're close to the crossing // point of the planes, moving mode is entered, otherwise // rotation/swivel mode const auto* positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) { return false; } BaseRenderer* renderer = positionEvent->GetSender(); if (nullptr == renderer) { return false; } const Point3D& position = positionEvent->GetPositionInWorld(); m_SNCsToBeRotated.clear(); const PlaneGeometry* clickedGeometry(nullptr); const PlaneGeometry* otherGeometry1(nullptr); const PlaneGeometry* otherGeometry2(nullptr); const ScalarType threshholdDistancePixels = 6.0; auto allRenderWindows = RenderingManager::GetInstance()->GetAllRegisteredRenderWindows(); for (auto renderWindow : allRenderWindows) { SliceNavigationController* snc = BaseRenderer::GetInstance(renderWindow)->GetSliceNavigationController(); // If the mouse cursor is in 3D Renderwindow, do not check for intersecting planes. if (BaseRenderer::Standard3D == BaseRenderer::GetInstance(renderWindow)->GetMapperID()) { continue; } const PlaneGeometry* rendererPlaneGeometry = snc->GetCurrentPlaneGeometry(); if (nullptr == rendererPlaneGeometry) { continue; // ignore, we don't see a plane } if (snc == renderer->GetSliceNavigationController()) { clickedGeometry = rendererPlaneGeometry; m_SNCsToBeRotated.push_back(snc); } else { if (nullptr == otherGeometry1) { otherGeometry1 = rendererPlaneGeometry; } else { otherGeometry2 = rendererPlaneGeometry; } if (m_LinkPlanes) { // if planes are linked, apply rotation to all planes m_SNCsToBeRotated.push_back(snc); } } } Line3D line; Point3D point; if ((nullptr != clickedGeometry) && (nullptr != otherGeometry1) && (nullptr != otherGeometry2) && clickedGeometry->IntersectionLine(otherGeometry1, line) && otherGeometry2->IntersectionPoint(line, point)) { m_CenterOfRotation = point; if (m_CenterOfRotation.EuclideanDistanceTo(position) < threshholdDistancePixels) { return false; } else { m_ReferenceCursor = positionEvent->GetPointerPositionOnScreen(); // Get main axes of rotation plane and store it for rotation step m_RotationPlaneNormal = clickedGeometry->GetNormal(); ScalarType xVector[] = { 1.0, 0.0, 0.0 }; ScalarType yVector[] = { 0.0, 1.0, 0.0 }; clickedGeometry->BaseGeometry::IndexToWorld(Vector3D(xVector), m_RotationPlaneXVector); clickedGeometry->BaseGeometry::IndexToWorld(Vector3D(yVector), m_RotationPlaneYVector); m_RotationPlaneNormal.Normalize(); m_RotationPlaneXVector.Normalize(); m_RotationPlaneYVector.Normalize(); m_PreviousRotationAxis.Fill(0.0); m_PreviousRotationAxis[2] = 1.0; m_PreviousRotationAngle = 0.0; return true; } } else { return false; } return false; } void mitk::DisplayActionEventBroadcast::Init(StateMachineAction* /*stateMachineAction*/, InteractionEvent* interactionEvent) { const auto* positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) { return; } m_LastDisplayCoordinate = positionEvent->GetPointerPositionOnScreen(); m_CurrentDisplayCoordinate = m_LastDisplayCoordinate; positionEvent->GetSender()->DisplayToPlane(m_LastDisplayCoordinate, m_StartCoordinateInMM); } void mitk::DisplayActionEventBroadcast::Move(StateMachineAction* /*stateMachineAction*/, InteractionEvent* interactionEvent) { const auto* positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) { return; } BaseRenderer* sender = interactionEvent->GetSender(); Vector2D moveVector = m_LastDisplayCoordinate - positionEvent->GetPointerPositionOnScreen(); if (m_InvertMoveDirection) { moveVector *= -1.0; } moveVector *= sender->GetScaleFactorMMPerDisplayUnit(); // #TODO: put here? // store new display coordinate m_LastDisplayCoordinate = positionEvent->GetPointerPositionOnScreen(); // propagate move event with computed geometry values InvokeEvent(DisplayMoveEvent(interactionEvent, moveVector)); } void mitk::DisplayActionEventBroadcast::SetCrosshair(StateMachineAction* /*stateMachineAction*/, InteractionEvent* interactionEvent) { const auto* positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) { return; } Point3D position = positionEvent->GetPositionInWorld(); // propagate set crosshair event with computed geometry values InvokeEvent(DisplaySetCrosshairEvent(interactionEvent, position)); } void mitk::DisplayActionEventBroadcast::Zoom(StateMachineAction* /*stateMachineAction*/, InteractionEvent* interactionEvent) { const auto* positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) { return; } float factor = 1.0; float distance = 0; if (m_ZoomDirection == "updown") { distance = m_CurrentDisplayCoordinate[1] - m_LastDisplayCoordinate[1]; } else { distance = m_CurrentDisplayCoordinate[0] - m_LastDisplayCoordinate[0]; } if (m_InvertZoomDirection) { distance *= -1.0; } // set zooming speed if (distance < 0.0) { factor = 1.0 / m_ZoomFactor; } else if (distance > 0.0) { factor = 1.0 * m_ZoomFactor; } // store new display coordinates m_LastDisplayCoordinate = m_CurrentDisplayCoordinate; m_CurrentDisplayCoordinate = positionEvent->GetPointerPositionOnScreen(); // propagate zoom event with computed geometry values InvokeEvent(DisplayZoomEvent(interactionEvent, factor, m_StartCoordinateInMM)); } void mitk::DisplayActionEventBroadcast::Scroll(StateMachineAction* /*stateMachineAction*/, InteractionEvent* interactionEvent) { const auto* positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) { return; } int sliceDelta = 0; // scroll direction if (m_ScrollDirection == "updown") { sliceDelta = static_cast(m_CurrentDisplayCoordinate[1] - m_LastDisplayCoordinate[1]); } else { sliceDelta = static_cast(m_CurrentDisplayCoordinate[0] - m_LastDisplayCoordinate[0]); } if (m_InvertScrollDirection) { sliceDelta *= -1; } // set how many pixels the mouse has to be moved to scroll one slice // if the mouse has been moved less than 'm_IndexToSliceModifier', pixels slice ONE slice only if (sliceDelta > 0 && sliceDelta < m_IndexToSliceModifier) { sliceDelta = m_IndexToSliceModifier; } else if (sliceDelta < 0 && sliceDelta > -m_IndexToSliceModifier) { sliceDelta = -m_IndexToSliceModifier; } sliceDelta /= m_IndexToSliceModifier; // store new display coordinates m_LastDisplayCoordinate = m_CurrentDisplayCoordinate; m_CurrentDisplayCoordinate = positionEvent->GetPointerPositionOnScreen(); // propagate scroll event with computed geometry values InvokeEvent(DisplayScrollEvent(interactionEvent, sliceDelta, m_AutoRepeat)); } void mitk::DisplayActionEventBroadcast::ScrollOneUp(StateMachineAction* /*stateMachineAction*/, InteractionEvent* interactionEvent) { int sliceDelta = 1; if (m_InvertScrollDirection) { sliceDelta = -1; } // propagate scroll event with a single slice delta (increase) InvokeEvent(DisplayScrollEvent(interactionEvent, sliceDelta, m_AutoRepeat)); } void mitk::DisplayActionEventBroadcast::ScrollOneDown(StateMachineAction* /*stateMachineAction*/, InteractionEvent* interactionEvent) { int sliceDelta = -1; if (m_InvertScrollDirection) { sliceDelta = 1; } // propagate scroll event with a single slice delta (decrease) InvokeEvent(DisplayScrollEvent(interactionEvent, sliceDelta, m_AutoRepeat)); } void mitk::DisplayActionEventBroadcast::AdjustLevelWindow(StateMachineAction* /*stateMachineAction*/, InteractionEvent* interactionEvent) { const auto* positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) { return; } ScalarType level; ScalarType window; if (m_LevelDirection == "leftright") { level = m_CurrentDisplayCoordinate[0] - m_LastDisplayCoordinate[0]; window = m_CurrentDisplayCoordinate[1] - m_LastDisplayCoordinate[1]; } else { level = m_CurrentDisplayCoordinate[1] - m_LastDisplayCoordinate[1]; window = m_CurrentDisplayCoordinate[0] - m_LastDisplayCoordinate[0]; } if (m_InvertLevelWindowDirection) { level *= -1; window *= -1; } level *= static_cast(2); window *= static_cast(2); // store new display coordinates m_LastDisplayCoordinate = m_CurrentDisplayCoordinate; m_CurrentDisplayCoordinate = positionEvent->GetPointerPositionOnScreen(); // propagate set level window event with the level and window delta InvokeEvent(DisplaySetLevelWindowEvent(interactionEvent, level, window)); } void mitk::DisplayActionEventBroadcast::StartRotation(StateMachineAction* /*stateMachineAction*/, InteractionEvent* /*interactionEvent*/) { SetMouseCursor(rotate_cursor_xpm, 0, 0); } void mitk::DisplayActionEventBroadcast::EndRotation(StateMachineAction* /*stateMachineAction*/, InteractionEvent* /*interactionEvent*/) { ResetMouseCursor(); } void mitk::DisplayActionEventBroadcast::Rotate(StateMachineAction* /*stateMachineAction*/, InteractionEvent* interactionEvent) { const auto* positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) { return; } Point3D position = positionEvent->GetPositionInWorld(); Vector3D toProjected = m_LastCursorPosition - m_CenterOfRotation; Vector3D toCursor = position - m_CenterOfRotation; // cross product: | A x B | = |A| * |B| * sin(angle) Vector3D axisOfRotation; vnl_vector_fixed vnlDirection = vnl_cross_3d(toCursor.GetVnlVector(), toProjected.GetVnlVector()); axisOfRotation.SetVnlVector(vnlDirection.as_ref()); // scalar product: A * B = |A| * |B| * cos(angle) // tan = sin / cos ScalarType angle = -atan2((double)(axisOfRotation.GetNorm()), (double)(toCursor * toProjected)); angle *= 180.0 / vnl_math::pi; m_LastCursorPosition = position; // create RotationOperation and apply to all SNCs that should be rotated RotationOperation rotationOperation(OpROTATE, m_CenterOfRotation, axisOfRotation, angle); // iterate the OTHER slice navigation controllers for (auto iter = m_SNCsToBeRotated.begin(); iter != m_SNCsToBeRotated.end(); ++iter) { TimeGeometry* timeGeometry = (*iter)->GetCreatedWorldGeometry(); if (nullptr == timeGeometry) { continue; } timeGeometry->ExecuteOperation(&rotationOperation); (*iter)->SendCreatedWorldGeometryUpdate(); } RenderingManager::GetInstance()->RequestUpdateAll(); } void mitk::DisplayActionEventBroadcast::Swivel(StateMachineAction* /*stateMachineAction*/, InteractionEvent* interactionEvent) { const auto* positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) { return; } // Determine relative mouse movement projected onto world space Point2D position = positionEvent->GetPointerPositionOnScreen(); Vector2D relativeCursor = position - m_ReferenceCursor; Vector3D relativeCursorAxis = m_RotationPlaneXVector * relativeCursor[0] + m_RotationPlaneYVector * relativeCursor[1]; // Determine rotation axis (perpendicular to rotation plane and cursor movement) Vector3D rotationAxis = itk::CrossProduct(m_RotationPlaneNormal, relativeCursorAxis); ScalarType rotationAngle = relativeCursor.GetNorm() / 2.0; // Restore the initial plane pose by undoing the previous rotation operation RotationOperation op(OpROTATE, m_CenterOfRotation, m_PreviousRotationAxis, -m_PreviousRotationAngle); SNCVector::iterator iter; for (iter = m_SNCsToBeRotated.begin(); iter != m_SNCsToBeRotated.end(); ++iter) { if (!(*iter)->GetSliceRotationLocked()) { TimeGeometry* timeGeometry = (*iter)->GetCreatedWorldGeometry(); if (nullptr == timeGeometry) { continue; } timeGeometry->ExecuteOperation(&op); (*iter)->SendCreatedWorldGeometryUpdate(); } } // Apply new rotation operation to all relevant SNCs RotationOperation op2(OpROTATE, m_CenterOfRotation, rotationAxis, rotationAngle); for (iter = m_SNCsToBeRotated.begin(); iter != m_SNCsToBeRotated.end(); ++iter) { if (!(*iter)->GetSliceRotationLocked()) { // Retrieve the TimeGeometry of this SliceNavigationController TimeGeometry *timeGeometry = (*iter)->GetCreatedWorldGeometry(); if (nullptr == timeGeometry) { continue; } // Execute the new rotation timeGeometry->ExecuteOperation(&op2); // Notify listeners (*iter)->SendCreatedWorldGeometryUpdate(); } } m_PreviousRotationAxis = rotationAxis; m_PreviousRotationAngle = rotationAngle; RenderingManager::GetInstance()->RequestUpdateAll(); return; } void mitk::DisplayActionEventBroadcast::IncreaseTimeStep(StateMachineAction*, InteractionEvent*) { - auto sliceNaviController = RenderingManager::GetInstance()->GetTimeNavigationController(); - auto stepper = sliceNaviController->GetTime(); + auto* timeNaviController = RenderingManager::GetInstance()->GetTimeNavigationController(); + auto* stepper = timeNaviController->GetStepper(); stepper->SetAutoRepeat(true); stepper->Next(); } void mitk::DisplayActionEventBroadcast::DecreaseTimeStep(StateMachineAction*, InteractionEvent*) { - auto sliceNaviController = RenderingManager::GetInstance()->GetTimeNavigationController(); - auto stepper = sliceNaviController->GetTime(); + auto* timeNaviController = RenderingManager::GetInstance()->GetTimeNavigationController(); + auto* stepper = timeNaviController->GetStepper(); stepper->SetAutoRepeat(true); stepper->Previous(); } bool mitk::DisplayActionEventBroadcast::GetBoolProperty(PropertyList::Pointer propertyList, const char* propertyName, bool defaultValue) { std::string valueAsString; if (!propertyList->GetStringProperty(propertyName, valueAsString)) { return defaultValue; } else { if (valueAsString == "true") { return true; } else { return false; } } } diff --git a/Modules/Core/src/Interactions/mitkDisplayActionEventFunctions.cpp b/Modules/Core/src/Interactions/mitkDisplayActionEventFunctions.cpp index d2ce34a462..d82e1c125c 100644 --- a/Modules/Core/src/Interactions/mitkDisplayActionEventFunctions.cpp +++ b/Modules/Core/src/Interactions/mitkDisplayActionEventFunctions.cpp @@ -1,320 +1,323 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkDisplayActionEventFunctions.h" // mitk core -#include "mitkBaseRenderer.h" -#include "mitkCameraController.h" -#include "mitkDisplayActionEvents.h" -#include "mitkInteractionPositionEvent.h" -#include "mitkLevelWindow.h" -#include "mitkLevelWindowProperty.h" -#include "mitkNodePredicateDataType.h" +#include +#include +#include +#include +#include +#include +#include +#include ////////////////////////////////////////////////////////////////////////// // STANDARD FUNCTIONS ////////////////////////////////////////////////////////////////////////// mitk::StdFunctionCommand::ActionFunction mitk::DisplayActionEventFunctions::MoveSenderCameraAction() { mitk::StdFunctionCommand::ActionFunction actionFunction = [](const itk::EventObject& displayInteractorEvent) { if (DisplayMoveEvent().CheckEvent(&displayInteractorEvent)) { const DisplayMoveEvent* displayActionEvent = dynamic_cast(&displayInteractorEvent); const BaseRenderer::Pointer sendingRenderer = displayActionEvent->GetSender(); if (nullptr == sendingRenderer) { return; } sendingRenderer->GetCameraController()->MoveBy(displayActionEvent->GetMoveVector()); RenderingManager::GetInstance()->RequestUpdate(sendingRenderer->GetRenderWindow()); } }; return actionFunction; } mitk::StdFunctionCommand::ActionFunction mitk::DisplayActionEventFunctions::SetCrosshairAction() { auto actionFunction = [](const itk::EventObject& displayInteractorEvent) { if (DisplaySetCrosshairEvent().CheckEvent(&displayInteractorEvent)) { const DisplaySetCrosshairEvent* displayActionEvent = dynamic_cast(&displayInteractorEvent); const BaseRenderer::Pointer sendingRenderer = displayActionEvent->GetSender(); if (nullptr == sendingRenderer) { return; } sendingRenderer->GetSliceNavigationController()->SelectSliceByPoint(displayActionEvent->GetPosition()); } }; return actionFunction; } mitk::StdFunctionCommand::ActionFunction mitk::DisplayActionEventFunctions::ZoomSenderCameraAction() { auto actionFunction = [](const itk::EventObject& displayInteractorEvent) { if (DisplayZoomEvent().CheckEvent(&displayInteractorEvent)) { const DisplayZoomEvent* displayActionEvent = dynamic_cast(&displayInteractorEvent); const BaseRenderer::Pointer sendingRenderer = displayActionEvent->GetSender(); if (nullptr == sendingRenderer) { return; } if (1.0 != displayActionEvent->GetZoomFactor()) { sendingRenderer->GetCameraController()->Zoom(displayActionEvent->GetZoomFactor(), displayActionEvent->GetStartCoordinate()); RenderingManager::GetInstance()->RequestUpdate(sendingRenderer->GetRenderWindow()); } } }; return actionFunction; } mitk::StdFunctionCommand::ActionFunction mitk::DisplayActionEventFunctions::ScrollSliceStepperAction() { auto actionFunction = [](const itk::EventObject& displayInteractorEvent) { if (DisplayScrollEvent().CheckEvent(&displayInteractorEvent)) { const DisplayScrollEvent* displayActionEvent = dynamic_cast(&displayInteractorEvent); const BaseRenderer::Pointer sendingRenderer = displayActionEvent->GetSender(); if (nullptr == sendingRenderer) { return; } mitk::SliceNavigationController* sliceNavigationController = sendingRenderer->GetSliceNavigationController(); if (nullptr == sliceNavigationController) { return; } if (sliceNavigationController->GetSliceLocked()) { return; } - mitk::Stepper* sliceStepper = sliceNavigationController->GetSlice(); - if (nullptr == sliceStepper) + mitk::Stepper* stepper = sliceNavigationController->GetStepper(); + if (nullptr == stepper) { return; } // if only a single slice image was loaded, scrolling will affect the time steps - if (sliceStepper->GetSteps() <= 1) + if (stepper->GetSteps() <= 1) { - sliceStepper = sliceNavigationController->GetTime(); + auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + stepper = timeNavigationController->GetStepper(); } - sliceStepper->SetAutoRepeat(displayActionEvent->GetAutoRepeat()); - sliceStepper->MoveSlice(displayActionEvent->GetSliceDelta()); + stepper->SetAutoRepeat(displayActionEvent->GetAutoRepeat()); + stepper->MoveSlice(displayActionEvent->GetSliceDelta()); } }; return actionFunction; } mitk::StdFunctionCommand::ActionFunction mitk::DisplayActionEventFunctions::SetLevelWindowAction() { auto actionFunction = [](const itk::EventObject& displayInteractorEvent) { if (DisplaySetLevelWindowEvent().CheckEvent(&displayInteractorEvent)) { const DisplaySetLevelWindowEvent* displayActionEvent = dynamic_cast(&displayInteractorEvent); const BaseRenderer::Pointer sendingRenderer = displayActionEvent->GetSender(); if (nullptr == sendingRenderer) { return; } // get the the topmost visible image of the sending renderer DataStorage::Pointer storage = sendingRenderer->GetDataStorage(); DataStorage::SetOfObjects::ConstPointer allImageNodes = storage->GetSubset(NodePredicateDataType::New("Image")); Point3D worldposition; const auto* positionEvent = dynamic_cast(displayActionEvent->GetInteractionEvent()); sendingRenderer->DisplayToWorld(positionEvent->GetPointerPositionOnScreen(), worldposition); auto globalCurrentTimePoint = sendingRenderer->GetTime(); DataNode::Pointer node = FindTopmostVisibleNode(allImageNodes, worldposition, globalCurrentTimePoint, sendingRenderer); if (node.IsNull()) { return; } LevelWindow levelWindow = LevelWindow(); node->GetLevelWindow(levelWindow); ScalarType level = levelWindow.GetLevel(); ScalarType window = levelWindow.GetWindow(); level += displayActionEvent->GetLevel(); window += displayActionEvent->GetWindow(); levelWindow.SetLevelWindow(level, window); auto* levelWindowProperty = dynamic_cast(node->GetProperty("levelwindow")); if (nullptr != levelWindowProperty) { levelWindowProperty->SetLevelWindow(levelWindow); RenderingManager::GetInstance()->RequestUpdateAll(); } } }; return actionFunction; } ////////////////////////////////////////////////////////////////////////// // SYNCHRONIZED FUNCTIONS ////////////////////////////////////////////////////////////////////////// mitk::StdFunctionCommand::ActionFunction mitk::DisplayActionEventFunctions::MoveCameraSynchronizedAction() { mitk::StdFunctionCommand::ActionFunction actionFunction = [](const itk::EventObject& displayInteractorEvent) { if (DisplayMoveEvent().CheckEvent(&displayInteractorEvent)) { const DisplayMoveEvent* displayActionEvent = dynamic_cast(&displayInteractorEvent); const BaseRenderer::Pointer sendingRenderer = displayActionEvent->GetSender(); if (nullptr == sendingRenderer) { return; } auto renderingManager = RenderingManager::GetInstance(); auto allRenderWindows = renderingManager->GetAllRegisteredRenderWindows(); for (auto renderWindow : allRenderWindows) { if (BaseRenderer::GetInstance(renderWindow)->GetMapperID() == BaseRenderer::Standard2D) { BaseRenderer::GetInstance(renderWindow)->GetCameraController()->MoveBy(displayActionEvent->GetMoveVector()); renderingManager->RequestUpdate(renderWindow); } } } }; return actionFunction; } mitk::StdFunctionCommand::ActionFunction mitk::DisplayActionEventFunctions::SetCrosshairSynchronizedAction() { auto actionFunction = [](const itk::EventObject& displayInteractorEvent) { if (DisplaySetCrosshairEvent().CheckEvent(&displayInteractorEvent)) { const DisplaySetCrosshairEvent* displayActionEvent = dynamic_cast(&displayInteractorEvent); const BaseRenderer::Pointer sendingRenderer = displayActionEvent->GetSender(); if (nullptr == sendingRenderer) { return; } auto allRenderWindows = RenderingManager::GetInstance()->GetAllRegisteredRenderWindows(); for (auto renderWindow : allRenderWindows) { if (BaseRenderer::GetInstance(renderWindow)->GetMapperID() == BaseRenderer::Standard2D) { BaseRenderer::GetInstance(renderWindow)->GetSliceNavigationController()->SelectSliceByPoint(displayActionEvent->GetPosition()); } } } }; return actionFunction; } mitk::StdFunctionCommand::ActionFunction mitk::DisplayActionEventFunctions::ZoomCameraSynchronizedAction() { auto actionFunction = [](const itk::EventObject& displayInteractorEvent) { if (DisplayZoomEvent().CheckEvent(&displayInteractorEvent)) { const DisplayZoomEvent* displayActionEvent = dynamic_cast(&displayInteractorEvent); const BaseRenderer::Pointer sendingRenderer = displayActionEvent->GetSender(); if (nullptr == sendingRenderer) { return; } if (1.0 != displayActionEvent->GetZoomFactor()) { auto renderingManager = RenderingManager::GetInstance(); auto allRenderWindows = renderingManager->GetAllRegisteredRenderWindows(); for (auto renderWindow : allRenderWindows) { if (BaseRenderer::GetInstance(renderWindow)->GetMapperID() == BaseRenderer::Standard2D) { BaseRenderer* currentRenderer = BaseRenderer::GetInstance(renderWindow); currentRenderer->GetCameraController()->Zoom(displayActionEvent->GetZoomFactor(), displayActionEvent->GetStartCoordinate()); renderingManager->RequestUpdate(currentRenderer->GetRenderWindow()); } } } } }; return actionFunction; } mitk::StdFunctionCommand::ActionFunction mitk::DisplayActionEventFunctions::ScrollSliceStepperSynchronizedAction() { auto actionFunction = [](const itk::EventObject& displayInteractorEvent) { if (DisplayScrollEvent().CheckEvent(&displayInteractorEvent)) { const DisplayScrollEvent* displayActionEvent = dynamic_cast(&displayInteractorEvent); const BaseRenderer::Pointer sendingRenderer = displayActionEvent->GetSender(); if (nullptr == sendingRenderer) { return; } auto allRenderWindows = RenderingManager::GetInstance()->GetAllRegisteredRenderWindows(); for (auto renderWindow : allRenderWindows) { if (BaseRenderer::GetInstance(renderWindow)->GetMapperID() == BaseRenderer::Standard2D) { SliceNavigationController* sliceNavigationController = BaseRenderer::GetInstance(renderWindow)->GetSliceNavigationController(); if (nullptr == sliceNavigationController) { return; } if (sliceNavigationController->GetSliceLocked()) { return; } - mitk::Stepper* sliceStepper = sliceNavigationController->GetSlice(); - if (nullptr == sliceStepper) + mitk::Stepper* stepper = sliceNavigationController->GetStepper(); + if (nullptr == stepper) { return; } // if only a single slice image was loaded, scrolling will affect the time steps - if (sliceStepper->GetSteps() <= 1) + if (stepper->GetSteps() <= 1) { - sliceStepper = sliceNavigationController->GetTime(); + auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + stepper = timeNavigationController->GetStepper(); } - sliceStepper->SetAutoRepeat(displayActionEvent->GetAutoRepeat()); - sliceStepper->MoveSlice(displayActionEvent->GetSliceDelta()); + stepper->SetAutoRepeat(displayActionEvent->GetAutoRepeat()); + stepper->MoveSlice(displayActionEvent->GetSliceDelta()); } } } }; return actionFunction; } diff --git a/Modules/Core/src/Rendering/mitkBaseRenderer.cpp b/Modules/Core/src/Rendering/mitkBaseRenderer.cpp index d0685e131f..f0c4d9b9d3 100644 --- a/Modules/Core/src/Rendering/mitkBaseRenderer.cpp +++ b/Modules/Core/src/Rendering/mitkBaseRenderer.cpp @@ -1,776 +1,780 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkBaseRenderer.h" #include "mitkBaseRendererHelper.h" #include "mitkMapper.h" #include "mitkResliceMethodProperty.h" // Geometries #include "mitkSlicedGeometry3D.h" #include "mitkVtkLayerController.h" #include "mitkInteractionConst.h" #include "mitkProperties.h" #include "mitkWeakPointerProperty.h" // VTK #include #include #include #include #include namespace mitk { itkEventMacroDefinition(RendererResetEvent, itk::AnyEvent); } mitk::BaseRenderer::BaseRendererMapType mitk::BaseRenderer::baseRendererMap; mitk::BaseRenderer *mitk::BaseRenderer::GetInstance(vtkRenderWindow *renWin) { for (auto mapit = baseRendererMap.begin(); mapit != baseRendererMap.end(); ++mapit) { if ((*mapit).first == renWin) return (*mapit).second; } return nullptr; } void mitk::BaseRenderer::AddInstance(vtkRenderWindow *renWin, BaseRenderer *baseRenderer) { if (renWin == nullptr || baseRenderer == nullptr) return; // ensure that no BaseRenderer is managed twice mitk::BaseRenderer::RemoveInstance(renWin); baseRendererMap.insert(BaseRendererMapType::value_type(renWin, baseRenderer)); } void mitk::BaseRenderer::RemoveInstance(vtkRenderWindow *renWin) { auto mapit = baseRendererMap.find(renWin); if (mapit != baseRendererMap.end()) baseRendererMap.erase(mapit); } mitk::BaseRenderer *mitk::BaseRenderer::GetByName(const std::string &name) { for (auto mapit = baseRendererMap.begin(); mapit != baseRendererMap.end(); ++mapit) { if ((*mapit).second->m_Name == name) return (*mapit).second; } return nullptr; } vtkRenderWindow *mitk::BaseRenderer::GetRenderWindowByName(const std::string &name) { for (auto mapit = baseRendererMap.begin(); mapit != baseRendererMap.end(); ++mapit) { if ((*mapit).second->m_Name == name) return (*mapit).first; } return nullptr; } mitk::BaseRenderer::BaseRendererMapType mitk::BaseRenderer::GetSpecificRenderWindows(MapperSlotId mapper) { BaseRendererMapType allRenderWindows; for (auto mapit = baseRendererMap.begin(); mapit != baseRendererMap.end(); ++mapit) { if (mapper == mapit->second->GetMapperID()) { allRenderWindows.insert(BaseRendererMapType::value_type(mapit->first, mapit->second)); } } return allRenderWindows; } mitk::BaseRenderer::BaseRendererMapType mitk::BaseRenderer::GetAll2DRenderWindows() { return GetSpecificRenderWindows(BaseRenderer::Standard2D); } mitk::BaseRenderer::BaseRendererMapType mitk::BaseRenderer::GetAll3DRenderWindows() { return GetSpecificRenderWindows(BaseRenderer::Standard3D); } mitk::BaseRenderer::BaseRenderer(const char *name, vtkRenderWindow *renWin) : m_RenderWindow(nullptr), m_VtkRenderer(nullptr), m_MapperID(StandardMapperSlot::Standard2D), m_DataStorage(nullptr), m_LastUpdateTime(0), m_CameraController(nullptr), m_CameraRotationController(nullptr), m_SliceNavigationController(nullptr), m_WorldTimeGeometry(nullptr), m_InteractionReferenceGeometry(nullptr), m_CurrentWorldGeometry(nullptr), m_CurrentWorldPlaneGeometry(nullptr), m_Slice(0), m_TimeStep(), m_CurrentWorldPlaneGeometryUpdateTime(), m_TimeStepUpdateTime(), m_KeepDisplayedRegion(true), m_ReferenceGeometryAligned(true), m_CurrentWorldPlaneGeometryData(nullptr), m_CurrentWorldPlaneGeometryNode(nullptr), m_CurrentWorldPlaneGeometryTransformTime(0), m_Name(name), m_EmptyWorldGeometry(true), m_NumberOfVisibleLODEnabledMappers(0) { m_Bounds[0] = 0; m_Bounds[1] = 0; m_Bounds[2] = 0; m_Bounds[3] = 0; m_Bounds[4] = 0; m_Bounds[5] = 0; if (name != nullptr) { m_Name = name; } else { m_Name = "unnamed renderer"; itkWarningMacro(<< "Created unnamed renderer. Bad for serialization. Please choose a name."); } if (renWin != nullptr) { m_RenderWindow = renWin; m_RenderWindow->Register(nullptr); } else { itkWarningMacro(<< "Created mitkBaseRenderer without vtkRenderWindow present."); } // instances.insert( this ); // adding this BaseRenderer to the List of all BaseRenderer m_BindDispatcherInteractor = new mitk::BindDispatcherInteractor(GetName()); WeakPointerProperty::Pointer rendererProp = WeakPointerProperty::New((itk::Object *)this); m_CurrentWorldPlaneGeometry = mitk::PlaneGeometry::New(); m_CurrentWorldPlaneGeometryData = mitk::PlaneGeometryData::New(); m_CurrentWorldPlaneGeometryData->SetPlaneGeometry(m_CurrentWorldPlaneGeometry); m_CurrentWorldPlaneGeometryNode = mitk::DataNode::New(); m_CurrentWorldPlaneGeometryNode->SetData(m_CurrentWorldPlaneGeometryData); m_CurrentWorldPlaneGeometryNode->GetPropertyList()->SetProperty("renderer", rendererProp); m_CurrentWorldPlaneGeometryNode->GetPropertyList()->SetProperty("layer", IntProperty::New(1000)); m_CurrentWorldPlaneGeometryNode->SetProperty("reslice.thickslices", mitk::ResliceMethodProperty::New()); m_CurrentWorldPlaneGeometryNode->SetProperty("reslice.thickslices.num", mitk::IntProperty::New(1)); m_CurrentWorldPlaneGeometryTransformTime = m_CurrentWorldPlaneGeometryNode->GetVtkTransform()->GetMTime(); m_SliceNavigationController = mitk::SliceNavigationController::New(); m_SliceNavigationController->SetRenderer(this); m_SliceNavigationController->ConnectGeometrySendEvent(this); m_SliceNavigationController->ConnectGeometryUpdateEvent(this); m_SliceNavigationController->ConnectGeometrySliceEvent(this); - m_SliceNavigationController->ConnectGeometryTimeEvent(this); + + auto* timeNavigationController = RenderingManager::GetInstance()->GetTimeNavigationController(); + timeNavigationController->ConnectTimeEvent(this); m_CameraRotationController = mitk::CameraRotationController::New(); m_CameraRotationController->SetRenderWindow(m_RenderWindow); m_CameraRotationController->AcquireCamera(); m_CameraController = mitk::CameraController::New(); m_CameraController->SetRenderer(this); m_VtkRenderer = vtkRenderer::New(); m_VtkRenderer->SetMaximumNumberOfPeels(16); if (AntiAliasing::FastApproximate == RenderingManager::GetInstance()->GetAntiAliasing()) m_VtkRenderer->UseFXAAOn(); if (nullptr == mitk::VtkLayerController::GetInstance(m_RenderWindow)) mitk::VtkLayerController::AddInstance(m_RenderWindow, m_VtkRenderer); mitk::VtkLayerController::GetInstance(m_RenderWindow)->InsertSceneRenderer(m_VtkRenderer); } mitk::BaseRenderer::~BaseRenderer() { if (m_VtkRenderer != nullptr) { m_VtkRenderer->Delete(); m_VtkRenderer = nullptr; } if (m_CameraController.IsNotNull()) m_CameraController->SetRenderer(nullptr); mitk::VtkLayerController::RemoveInstance(m_RenderWindow); RemoveAllLocalStorages(); m_DataStorage = nullptr; if (m_BindDispatcherInteractor != nullptr) { delete m_BindDispatcherInteractor; } if (m_RenderWindow != nullptr) { m_RenderWindow->Delete(); m_RenderWindow = nullptr; } + + auto* timeNavigationController = RenderingManager::GetInstance()->GetTimeNavigationController(); + timeNavigationController->Disconnect(this); } void mitk::BaseRenderer::RemoveAllLocalStorages() { this->InvokeEvent(RendererResetEvent()); std::list::iterator it; for (it = m_RegisteredLocalStorageHandlers.begin(); it != m_RegisteredLocalStorageHandlers.end(); ++it) (*it)->ClearLocalStorage(this, false); m_RegisteredLocalStorageHandlers.clear(); } void mitk::BaseRenderer::RegisterLocalStorageHandler(mitk::BaseLocalStorageHandler *lsh) { m_RegisteredLocalStorageHandlers.push_back(lsh); } void mitk::BaseRenderer::UnregisterLocalStorageHandler(mitk::BaseLocalStorageHandler *lsh) { m_RegisteredLocalStorageHandlers.remove(lsh); } void mitk::BaseRenderer::SetDataStorage(DataStorage *storage) { if (storage != m_DataStorage && storage != nullptr) { m_DataStorage = storage; m_BindDispatcherInteractor->SetDataStorage(m_DataStorage); this->Modified(); } } mitk::Dispatcher::Pointer mitk::BaseRenderer::GetDispatcher() const { return m_BindDispatcherInteractor->GetDispatcher(); } void mitk::BaseRenderer::Resize(int w, int h) { m_RenderWindow->SetSize(w, h); } void mitk::BaseRenderer::InitRenderer(vtkRenderWindow *renderwindow) { if (m_RenderWindow != renderwindow) { if (m_RenderWindow != nullptr) { m_RenderWindow->Delete(); } m_RenderWindow = renderwindow; if (m_RenderWindow != nullptr) { m_RenderWindow->Register(nullptr); } } RemoveAllLocalStorages(); if (m_CameraController.IsNotNull()) { m_CameraController->SetRenderer(this); } } void mitk::BaseRenderer::InitSize(int w, int h) { m_RenderWindow->SetSize(w, h); } void mitk::BaseRenderer::SetWorldTimeGeometry(const mitk::TimeGeometry* geometry) { if (m_WorldTimeGeometry == geometry) { return; } m_WorldTimeGeometry = geometry; this->UpdateCurrentGeometries(); } void mitk::BaseRenderer::SetInteractionReferenceGeometry(const TimeGeometry* geometry) { if (m_InteractionReferenceGeometry == geometry) { return; } m_InteractionReferenceGeometry = geometry; this->UpdateCurrentGeometries(); } void mitk::BaseRenderer::SetSlice(unsigned int slice) { if (m_Slice == slice) { return; } m_Slice = slice; this->UpdateCurrentGeometries(); } void mitk::BaseRenderer::SetTimeStep(unsigned int timeStep) { if (m_TimeStep == timeStep) { return; } m_TimeStep = timeStep; m_TimeStepUpdateTime.Modified(); this->UpdateCurrentGeometries(); } mitk::TimeStepType mitk::BaseRenderer::GetTimeStep(const mitk::BaseData* data) const { if ((data == nullptr) || (data->IsInitialized() == false)) { return -1; } return data->GetTimeGeometry()->TimePointToTimeStep(GetTime()); } mitk::ScalarType mitk::BaseRenderer::GetTime() const { if (m_WorldTimeGeometry.IsNull()) { return 0; } else { ScalarType timeInMS = m_WorldTimeGeometry->TimeStepToTimePoint(GetTimeStep()); if (timeInMS == itk::NumericTraits::NonpositiveMin()) return 0; else return timeInMS; } } void mitk::BaseRenderer::SetGeometry(const itk::EventObject& geometrySendEvent) { const auto* sendEvent = dynamic_cast(&geometrySendEvent); if (nullptr == sendEvent) { return; } SetWorldTimeGeometry(sendEvent->GetTimeGeometry()); } void mitk::BaseRenderer::UpdateGeometry(const itk::EventObject& geometryUpdateEvent) { const auto* updateEvent = dynamic_cast(&geometryUpdateEvent); if (nullptr == updateEvent) { return; } if (m_CurrentWorldGeometry.IsNull()) { return; } const auto* slicedWorldGeometry = dynamic_cast(m_CurrentWorldGeometry.GetPointer()); if (slicedWorldGeometry) { PlaneGeometry* geometry2D = slicedWorldGeometry->GetPlaneGeometry(m_Slice); SetCurrentWorldPlaneGeometry(geometry2D); // calls Modified() } } void mitk::BaseRenderer::SetGeometrySlice(const itk::EventObject& geometrySliceEvent) { const auto* sliceEvent = dynamic_cast(&geometrySliceEvent); if (nullptr == sliceEvent) { return; } this->SetSlice(sliceEvent->GetPos()); } void mitk::BaseRenderer::SetGeometryTime(const itk::EventObject& geometryTimeEvent) { - const auto* timeEvent = dynamic_cast(&geometryTimeEvent); + const auto* timeEvent = dynamic_cast(&geometryTimeEvent); if (nullptr == timeEvent) { return; } - this->SetTimeStep(timeEvent->GetPos()); + this->SetTimeStep(timeEvent->GetTimeStep()); } void mitk::BaseRenderer::SendUpdateSlice() { m_CurrentWorldPlaneGeometryUpdateTime.Modified(); } void mitk::BaseRenderer::SetMapperID(MapperSlotId id) { if (m_MapperID != id) { bool useDepthPeeling = Standard3D == id; m_VtkRenderer->SetUseDepthPeeling(useDepthPeeling); m_VtkRenderer->SetUseDepthPeelingForVolumes(useDepthPeeling); m_MapperID = id; this->Modified(); } } int* mitk::BaseRenderer::GetSize() const { return m_RenderWindow->GetSize(); } int* mitk::BaseRenderer::GetViewportSize() const { return m_VtkRenderer->GetSize(); } const double* mitk::BaseRenderer::GetBounds() const { return m_Bounds; } void mitk::BaseRenderer::RequestUpdate() { SetConstrainZoomingAndPanning(true); RenderingManager::GetInstance()->RequestUpdate(m_RenderWindow); } void mitk::BaseRenderer::ForceImmediateUpdate() { RenderingManager::GetInstance()->ForceImmediateUpdate(m_RenderWindow); } unsigned int mitk::BaseRenderer::GetNumberOfVisibleLODEnabledMappers() const { return m_NumberOfVisibleLODEnabledMappers; } void mitk::BaseRenderer::SetSliceNavigationController(mitk::SliceNavigationController *SlicenavigationController) { if (SlicenavigationController == nullptr) return; // copy worldgeometry SlicenavigationController->SetInputWorldTimeGeometry(SlicenavigationController->GetCreatedWorldGeometry()); SlicenavigationController->Update(); // set new m_SliceNavigationController = SlicenavigationController; m_SliceNavigationController->SetRenderer(this); if (m_SliceNavigationController.IsNotNull()) { m_SliceNavigationController->ConnectGeometrySendEvent(this); m_SliceNavigationController->ConnectGeometryUpdateEvent(this); m_SliceNavigationController->ConnectGeometrySliceEvent(this); - m_SliceNavigationController->ConnectGeometryTimeEvent(this); } } void mitk::BaseRenderer::DisplayToWorld(const Point2D& displayPoint, Point3D& worldIndex) const { if (m_MapperID == BaseRenderer::Standard2D) { double display[3], * world; // For the right z-position in display coordinates, take the focal point, convert it to display and use it for // correct depth. double* displayCoord; double cameraFP[4]; // Get camera focal point and position. Convert to display (screen) // coordinates. We need a depth value for z-buffer. this->GetVtkRenderer()->GetActiveCamera()->GetFocalPoint(cameraFP); cameraFP[3] = 0.0; this->GetVtkRenderer()->SetWorldPoint(cameraFP[0], cameraFP[1], cameraFP[2], cameraFP[3]); this->GetVtkRenderer()->WorldToDisplay(); displayCoord = this->GetVtkRenderer()->GetDisplayPoint(); // now convert the display point to world coordinates display[0] = displayPoint[0]; display[1] = displayPoint[1]; display[2] = displayCoord[2]; this->GetVtkRenderer()->SetDisplayPoint(display); this->GetVtkRenderer()->DisplayToWorld(); world = this->GetVtkRenderer()->GetWorldPoint(); for (int i = 0; i < 3; i++) { worldIndex[i] = world[i] / world[3]; } } else if (m_MapperID == BaseRenderer::Standard3D) { // Seems to be the same code as above, but subclasses may contain different implementations. PickWorldPoint(displayPoint, worldIndex); } return; } void mitk::BaseRenderer::DisplayToPlane(const Point2D &displayPoint, Point2D &planePointInMM) const { if (m_MapperID == BaseRenderer::Standard2D) { Point3D worldPoint; this->DisplayToWorld(displayPoint, worldPoint); m_CurrentWorldPlaneGeometry->Map(worldPoint, planePointInMM); } else if (m_MapperID == BaseRenderer::Standard3D) { MITK_WARN << "No conversion possible with 3D mapper."; return; } return; } void mitk::BaseRenderer::WorldToDisplay(const Point3D &worldIndex, Point2D &displayPoint) const { double world[4], *display; world[0] = worldIndex[0]; world[1] = worldIndex[1]; world[2] = worldIndex[2]; world[3] = 1.0; this->GetVtkRenderer()->SetWorldPoint(world); this->GetVtkRenderer()->WorldToDisplay(); display = this->GetVtkRenderer()->GetDisplayPoint(); displayPoint[0] = display[0]; displayPoint[1] = display[1]; return; } void mitk::BaseRenderer::WorldToView(const mitk::Point3D &worldIndex, mitk::Point2D &viewPoint) const { double world[4], *view; world[0] = worldIndex[0]; world[1] = worldIndex[1]; world[2] = worldIndex[2]; world[3] = 1.0; this->GetVtkRenderer()->SetWorldPoint(world); this->GetVtkRenderer()->WorldToView(); view = this->GetVtkRenderer()->GetViewPoint(); this->GetVtkRenderer()->ViewToNormalizedViewport(view[0], view[1], view[2]); viewPoint[0] = view[0] * this->GetViewportSize()[0]; viewPoint[1] = view[1] * this->GetViewportSize()[1]; return; } void mitk::BaseRenderer::PlaneToDisplay(const Point2D &planePointInMM, Point2D &displayPoint) const { Point3D worldPoint; m_CurrentWorldPlaneGeometry->Map(planePointInMM, worldPoint); this->WorldToDisplay(worldPoint, displayPoint); return; } void mitk::BaseRenderer::PlaneToView(const Point2D &planePointInMM, Point2D &viewPoint) const { Point3D worldPoint; m_CurrentWorldPlaneGeometry->Map(planePointInMM, worldPoint); this->WorldToView(worldPoint,viewPoint); return; } double mitk::BaseRenderer::GetScaleFactorMMPerDisplayUnit() const { if (this->GetMapperID() == BaseRenderer::Standard2D) { // GetParallelScale returns half of the height of the render window in mm. // Divided by the half size of the Display size in pixel givest the mm per pixel. return this->GetVtkRenderer()->GetActiveCamera()->GetParallelScale() * 2.0 / GetViewportSize()[1]; } else return 1.0; } mitk::Point2D mitk::BaseRenderer::GetDisplaySizeInMM() const { Point2D dispSizeInMM; dispSizeInMM[0] = GetSizeX() * GetScaleFactorMMPerDisplayUnit(); dispSizeInMM[1] = GetSizeY() * GetScaleFactorMMPerDisplayUnit(); return dispSizeInMM; } mitk::Point2D mitk::BaseRenderer::GetViewportSizeInMM() const { Point2D dispSizeInMM; dispSizeInMM[0] = GetViewportSize()[0] * GetScaleFactorMMPerDisplayUnit(); dispSizeInMM[1] = GetViewportSize()[1] * GetScaleFactorMMPerDisplayUnit(); return dispSizeInMM; } mitk::Point2D mitk::BaseRenderer::GetOriginInMM() const { Point2D originPx; originPx[0] = m_VtkRenderer->GetOrigin()[0]; originPx[1] = m_VtkRenderer->GetOrigin()[1]; Point2D displayGeometryOriginInMM; DisplayToPlane(originPx, displayGeometryOriginInMM); // top left of the render window (Origin) return displayGeometryOriginInMM; } void mitk::BaseRenderer::SetConstrainZoomingAndPanning(bool constrain) { m_ConstrainZoomingAndPanning = constrain; if (m_ConstrainZoomingAndPanning) { this->GetCameraController()->AdjustCameraToPlane(); } } void mitk::BaseRenderer::UpdateCurrentGeometries() { m_ReferenceGeometryAligned = true; if (m_WorldTimeGeometry.IsNull()) { // simply mark the base renderer as modified Modified(); return; } if (m_TimeStep >= m_WorldTimeGeometry->CountTimeSteps()) { m_TimeStep = m_WorldTimeGeometry->CountTimeSteps() - 1; } auto slicedWorldGeometry = dynamic_cast(m_WorldTimeGeometry->GetGeometryForTimeStep(m_TimeStep).GetPointer()); if (slicedWorldGeometry != nullptr) { if (m_Slice >= slicedWorldGeometry->GetSlices()) { m_Slice = slicedWorldGeometry->GetSlices() - 1; } SetCurrentWorldGeometry(slicedWorldGeometry); SetCurrentWorldPlaneGeometry(slicedWorldGeometry->GetPlaneGeometry(m_Slice)); m_ReferenceGeometryAligned = BaseRendererHelper::IsRendererGeometryAlignedWithGeometry(this, m_InteractionReferenceGeometry); } } void mitk::BaseRenderer::SetCurrentWorldPlaneGeometry(const mitk::PlaneGeometry* geometry2d) { if (m_CurrentWorldPlaneGeometry == geometry2d) { return; } m_CurrentWorldPlaneGeometry = geometry2d->Clone(); m_CurrentWorldPlaneGeometryData->SetPlaneGeometry(m_CurrentWorldPlaneGeometry); m_CurrentWorldPlaneGeometryUpdateTime.Modified(); Modified(); } void mitk::BaseRenderer::SetCurrentWorldGeometry(const mitk::BaseGeometry* geometry) { if (m_CurrentWorldGeometry == geometry) { return; } m_CurrentWorldGeometry = geometry; if (geometry == nullptr) { m_Bounds[0] = 0; m_Bounds[1] = 0; m_Bounds[2] = 0; m_Bounds[3] = 0; m_Bounds[4] = 0; m_Bounds[5] = 0; m_EmptyWorldGeometry = true; return; } BoundingBox::Pointer boundingBox = m_CurrentWorldGeometry->CalculateBoundingBoxRelativeToTransform(nullptr); const BoundingBox::BoundsArrayType& worldBounds = boundingBox->GetBounds(); m_Bounds[0] = worldBounds[0]; m_Bounds[1] = worldBounds[1]; m_Bounds[2] = worldBounds[2]; m_Bounds[3] = worldBounds[3]; m_Bounds[4] = worldBounds[4]; m_Bounds[5] = worldBounds[5]; if (boundingBox->GetDiagonalLength2() <= mitk::eps) { m_EmptyWorldGeometry = true; } else { m_EmptyWorldGeometry = false; } } void mitk::BaseRenderer::PrintSelf(std::ostream &os, itk::Indent indent) const { os << indent << " MapperID: " << m_MapperID << std::endl; os << indent << " Slice: " << m_Slice << std::endl; os << indent << " TimeStep: " << m_TimeStep << std::endl; os << indent << " CurrentWorldPlaneGeometry: "; if (m_CurrentWorldPlaneGeometry.IsNull()) os << "nullptr" << std::endl; else m_CurrentWorldPlaneGeometry->Print(os, indent); os << indent << " CurrentWorldPlaneGeometryUpdateTime: " << m_CurrentWorldPlaneGeometryUpdateTime << std::endl; os << indent << " CurrentWorldPlaneGeometryTransformTime: " << m_CurrentWorldPlaneGeometryTransformTime << std::endl; Superclass::PrintSelf(os, indent); } diff --git a/Modules/Core/test/mitkSliceNavigationControllerTest.cpp b/Modules/Core/test/mitkSliceNavigationControllerTest.cpp index a546ced931..262a1683c1 100644 --- a/Modules/Core/test/mitkSliceNavigationControllerTest.cpp +++ b/Modules/Core/test/mitkSliceNavigationControllerTest.cpp @@ -1,196 +1,177 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include #include #include #include #include #include #include // T22254 class mitkSliceNavigationControllerTestSuite : public mitk::TestFixture { CPPUNIT_TEST_SUITE(mitkSliceNavigationControllerTestSuite); CPPUNIT_TEST(validateAxialViewDirection); CPPUNIT_TEST(validateCoronalViewDirection); CPPUNIT_TEST(validateSagittalViewDirection); - CPPUNIT_TEST(GetSelectedTimePoint); CPPUNIT_TEST_SUITE_END(); mitk::Geometry3D::Pointer m_Geometry3D; mitk::ArbitraryTimeGeometry::Pointer m_TimeGeometry; public: void setUp() override { mitk::Point3D origin; mitk::FillVector3D(origin, 10.0, 20.0, 30.0); mitk::Vector3D firstAxisVector; mitk::FillVector3D(firstAxisVector, 100.0, 0.0, 0.0); mitk::Vector3D secondAxisVector; mitk::FillVector3D(secondAxisVector, 0.0, 50.0, 0.0); mitk::Vector3D spacing; mitk::FillVector3D(spacing, 1.0, 1.0, 2.0); auto planeGeometry = mitk::PlaneGeometry::New(); planeGeometry->InitializeStandardPlane(firstAxisVector, secondAxisVector, &spacing); planeGeometry->SetOrigin(origin); unsigned int numberOfSlices = 100U; auto slicedGeometry3D = mitk::SlicedGeometry3D::New(); slicedGeometry3D->InitializeEvenlySpaced(planeGeometry, numberOfSlices); m_Geometry3D = mitk::Geometry3D::New(); m_Geometry3D->SetBounds(slicedGeometry3D->GetBounds()); m_Geometry3D->SetIndexToWorldTransform(slicedGeometry3D->GetIndexToWorldTransform()); m_TimeGeometry = mitk::ArbitraryTimeGeometry::New(); m_TimeGeometry->AppendNewTimeStepClone(m_Geometry3D, 0.5, 10.); m_TimeGeometry->AppendNewTimeStepClone(m_Geometry3D, 10., 30.); m_TimeGeometry->AppendNewTimeStepClone(m_Geometry3D, 30., 50.); m_TimeGeometry->AppendNewTimeStepClone(m_Geometry3D, 50., 60.); m_TimeGeometry->Update(); } void tearDown() override { } void validateAxialViewDirection() { auto sliceNavigationController = mitk::SliceNavigationController::New(); sliceNavigationController->SetInputWorldTimeGeometry(m_TimeGeometry); sliceNavigationController->SetViewDirection(mitk::AnatomicalPlane::Axial); sliceNavigationController->Update(); mitk::Point3D origin; mitk::FillVector3D(origin, 10.0, 70.0, 229.0); mitk::Vector3D firstAxisVector; mitk::FillVector3D(firstAxisVector, 100.0, 0.0, 0.0); mitk::Vector3D secondAxisVector; mitk::FillVector3D(secondAxisVector, 0.0, -50.0, 0.0); mitk::Vector3D thirdAxisVector; mitk::FillVector3D(thirdAxisVector, 0.0, 0.0, -200.0); std::cout << "Axial view direction" << std::endl; CPPUNIT_ASSERT(this->validateGeometry(sliceNavigationController->GetCurrentGeometry3D(), origin, firstAxisVector, secondAxisVector, thirdAxisVector)); } void validateCoronalViewDirection() { auto sliceNavigationController = mitk::SliceNavigationController::New(); sliceNavigationController->SetInputWorldTimeGeometry(m_TimeGeometry); sliceNavigationController->SetViewDirection(mitk::AnatomicalPlane::Coronal); sliceNavigationController->Update(); mitk::Point3D origin; mitk::FillVector3D(origin, 10.0, 69.5, 30.0); mitk::Vector3D firstAxisVector; mitk::FillVector3D(firstAxisVector, 100.0, 0.0, 0.0); mitk::Vector3D secondAxisVector; mitk::FillVector3D(secondAxisVector, 0.0, 0.0, 200.0); mitk::Vector3D thirdAxisVector; mitk::FillVector3D(thirdAxisVector, 0.0, -50.0, 0.0); std::cout << "Coronal view direction" << std::endl; CPPUNIT_ASSERT(this->validateGeometry(sliceNavigationController->GetCurrentGeometry3D(), origin, firstAxisVector, secondAxisVector, thirdAxisVector)); } void validateSagittalViewDirection() { auto sliceNavigationController = mitk::SliceNavigationController::New(); sliceNavigationController->SetInputWorldTimeGeometry(m_TimeGeometry); sliceNavigationController->SetViewDirection(mitk::AnatomicalPlane::Sagittal); sliceNavigationController->Update(); mitk::Point3D origin; mitk::FillVector3D(origin, 10.5, 20.0, 30.0); mitk::Vector3D firstAxisVector; mitk::FillVector3D(firstAxisVector, 0.0, 50.0, 0.0); mitk::Vector3D secondAxisVector; mitk::FillVector3D(secondAxisVector, 0.0, 0.0, 200.0); mitk::Vector3D thirdAxisVector; mitk::FillVector3D(thirdAxisVector, 100.0, 0.0, 0.0); std::cout << "Sagittal view direction" << std::endl; CPPUNIT_ASSERT(this->validateGeometry(sliceNavigationController->GetCurrentGeometry3D(), origin, firstAxisVector, secondAxisVector, thirdAxisVector)); } - void GetSelectedTimePoint() - { - auto sliceNavigationController = mitk::SliceNavigationController::New(); - - CPPUNIT_ASSERT(sliceNavigationController->GetSelectedTimePoint() == 0.); - - sliceNavigationController->SetInputWorldTimeGeometry(m_TimeGeometry); - sliceNavigationController->SetViewDirection(mitk::AnatomicalPlane::Sagittal); - sliceNavigationController->Update(); - - CPPUNIT_ASSERT(sliceNavigationController->GetSelectedTimeStep() == 0); - CPPUNIT_ASSERT(sliceNavigationController->GetSelectedTimePoint() == 0.5); - - sliceNavigationController->GetTime()->SetPos(2); - CPPUNIT_ASSERT(sliceNavigationController->GetSelectedTimeStep() == 2); - CPPUNIT_ASSERT(sliceNavigationController->GetSelectedTimePoint() == 30.0); - } - private: bool validateGeometry(mitk::BaseGeometry::ConstPointer geometry, const mitk::Point3D &origin, const mitk::Vector3D &firstAxisVector, const mitk::Vector3D &secondAxisVector, const mitk::Vector3D &thirdAxisVector) { bool result = true; std::cout << " Origin" << std::endl; if (!mitk::Equal(geometry->GetOrigin(), origin, mitk::eps, true)) result = false; std::cout << " First axis vector" << std::endl; if (!mitk::Equal(geometry->GetAxisVector(0), firstAxisVector, mitk::eps, true)) result = false; std::cout << " Second axis vector" << std::endl; if (!mitk::Equal(geometry->GetAxisVector(1), secondAxisVector, mitk::eps, true)) result = false; std::cout << " Third axis vector" << std::endl; if (!mitk::Equal(geometry->GetAxisVector(2), thirdAxisVector, mitk::eps, true)) result = false; return result; } }; MITK_TEST_SUITE_REGISTRATION(mitkSliceNavigationController) diff --git a/Modules/QtWidgets/include/QmitkMxNMultiWidget.h b/Modules/QtWidgets/include/QmitkMxNMultiWidget.h index 103e6de46a..9ae1bc0ab7 100644 --- a/Modules/QtWidgets/include/QmitkMxNMultiWidget.h +++ b/Modules/QtWidgets/include/QmitkMxNMultiWidget.h @@ -1,136 +1,131 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkMxNMultiWidget_h #define QmitkMxNMultiWidget_h #include "MitkQtWidgetsExports.h" // qt widgets module #include "QmitkAbstractMultiWidget.h" #include #include #include class QSplitter; /** * @brief The 'QmitkMxNMultiWidget' is a 'QmitkAbstractMultiWidget' that is used to display multiple render windows at once. * Render windows can dynamically be added and removed to change the layout of the multi widget. This * is done by using the 'SetLayout'-function to define a layout. This will automatically add or remove * the appropriate number of render window widgets. */ class MITKQTWIDGETS_EXPORT QmitkMxNMultiWidget : public QmitkAbstractMultiWidget { Q_OBJECT public: QmitkMxNMultiWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0, const QString& multiWidgetName = "mxn"); ~QmitkMxNMultiWidget(); void InitializeMultiWidget() override; void Synchronize(bool synchronized) override; QmitkRenderWindow* GetRenderWindow(const QString& widgetName) const override; QmitkRenderWindow* GetRenderWindow(const mitk::AnatomicalPlane& orientation) const override; void SetActiveRenderWindowWidget(RenderWindowWidgetPointer activeRenderWindowWidget) override; /** * @brief Initialize the active render windows of the MxNMultiWidget to the given geometry. * * @param geometry The geometry to be used to initialize / update the * active render window's time and slice navigation controller. * @param resetCamera If true, the camera and crosshair will be reset to the default view (centered, no zoom). * If false, the current crosshair position and the camera zoom will be stored and reset * after the reference geometry has been updated. */ void InitializeViews(const mitk::TimeGeometry* geometry, bool resetCamera) override; /** * @brief Forward the given time geometry to all base renderers, so that they can store it as their * interaction reference geometry. * This will update the alignment status of the reference geometry for each base renderer. * For more details, see 'BaseRenderer::SetInteractionReferenceGeometry'. * Overridem from 'QmitkAbstractMultiWidget'. */ void SetInteractionReferenceGeometry(const mitk::TimeGeometry* referenceGeometry) override; /** * @brief Returns true if the render windows are coupled; false if not. * * For the MxNMultiWidget the render windows are typically decoupled. */ bool HasCoupledRenderWindows() const override; void SetSelectedPosition(const mitk::Point3D& newPosition, const QString& widgetName) override; const mitk::Point3D GetSelectedPosition(const QString& widgetName) const override; void SetCrosshairVisibility(bool visible) override; bool GetCrosshairVisibility() const override; void SetCrosshairGap(unsigned int gapSize) override; void ResetCrosshair() override; void SetWidgetPlaneMode(int userMode) override; mitk::SliceNavigationController* GetTimeNavigationController(); void EnableCrosshair(); void DisableCrosshair(); public Q_SLOTS: // mouse events void wheelEvent(QWheelEvent* e) override; void mousePressEvent(QMouseEvent* e) override; void moveEvent(QMoveEvent* e) override; void LoadLayout(const nlohmann::json* jsonData); void SaveLayout(std::ostream* outStream); Q_SIGNALS: void WheelMoved(QWheelEvent *); void Moved(); void UpdateUtilityWidgetViewPlanes(); void LayoutChanged(); -protected: - - void RemoveRenderWindowWidget() override; - private: void SetLayoutImpl() override; void SetInteractionSchemeImpl() override { } QmitkAbstractMultiWidget::RenderWindowWidgetPointer CreateRenderWindowWidget(); void SetInitialSelection(); void ToggleSynchronization(QmitkSynchronizedNodeSelectionWidget* synchronizedWidget); static nlohmann::json BuildJSONFromLayout(const QSplitter* splitter); QSplitter* BuildLayoutFromJSON(const nlohmann::json* jsonData, unsigned int* windowCounter, QSplitter* parentSplitter = nullptr); - mitk::SliceNavigationController* m_TimeNavigationController; std::unique_ptr m_SynchronizedWidgetConnector; bool m_CrosshairVisibility; }; #endif diff --git a/Modules/QtWidgets/include/QmitkStdMultiWidget.h b/Modules/QtWidgets/include/QmitkStdMultiWidget.h index ce22931e50..9c6f0e34d0 100644 --- a/Modules/QtWidgets/include/QmitkStdMultiWidget.h +++ b/Modules/QtWidgets/include/QmitkStdMultiWidget.h @@ -1,176 +1,173 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkStdMultiWidget_h #define QmitkStdMultiWidget_h // qt widgets module #include "MitkQtWidgetsExports.h" #include "QmitkAbstractMultiWidget.h" /** * @brief The 'QmitkStdMultiWidget' is a 'QmitkAbstractMultiWidget' that is used to display multiple render windows at once. * Render windows are predefined in a 2x2 design with 3 different 2D view planes and a 3D render window. */ class MITKQTWIDGETS_EXPORT QmitkStdMultiWidget : public QmitkAbstractMultiWidget { Q_OBJECT public: QmitkStdMultiWidget( QWidget *parent = nullptr, Qt::WindowFlags f = nullptr, const QString &name = "stdmulti"); ~QmitkStdMultiWidget() override; virtual void InitializeMultiWidget() override; virtual QmitkRenderWindow* GetRenderWindow(const QString& widgetName) const override; virtual QmitkRenderWindow* GetRenderWindow(const mitk::AnatomicalPlane& orientation) const override; /** * @brief Initialize all render windows of the StdMultiWidget to the given geometry. * Overridem from 'QmitkAbstractMultiWidget'. * * @param geometry The geometry to be used to initialize / update all * render window's time and slice navigation controller. * @param resetCamera If true, the camera and crosshair will be reset to the default view (centered, no zoom). * If false, the current crosshair position and the camera zoom will be stored and reset * after the reference geometry has been updated. */ void InitializeViews(const mitk::TimeGeometry* geometry, bool resetCamera) override; /** * @brief Not implemented in this class. * Overridem from 'QmitkAbstractMultiWidget'. */ void SetInteractionReferenceGeometry(const mitk::TimeGeometry* referenceGeometry) override; /** * @brief Returns true if the render windows are coupled; false if not. * * For the StdMultiWidget the render windows are typically coupled. */ bool HasCoupledRenderWindows() const override; virtual void SetSelectedPosition(const mitk::Point3D& newPosition, const QString& widgetName) override; virtual const mitk::Point3D GetSelectedPosition(const QString& widgetName) const override; virtual void SetCrosshairVisibility(bool) override; virtual bool GetCrosshairVisibility() const override; void SetCrosshairGap(unsigned int gapSize) override; virtual void ResetCrosshair() override; virtual void SetWidgetPlaneMode(int mode) override; - mitk::SliceNavigationController* GetTimeNavigationController(); void AddPlanesToDataStorage(); void RemovePlanesFromDataStorage(); /** * @brief Convenience method to get a render window widget. * @param number of the widget (0-3) * @return The render window widget */ QmitkRenderWindow* GetRenderWindow(unsigned int number) const; QmitkRenderWindow* GetRenderWindow1() const; QmitkRenderWindow* GetRenderWindow2() const; QmitkRenderWindow* GetRenderWindow3() const; QmitkRenderWindow* GetRenderWindow4() const; /** * @brief Convenience method to get a widget plane. * @param number of the widget plane (1-3) * @return The widget plane as data node */ mitk::DataNode::Pointer GetWidgetPlane(unsigned int number) const; mitk::DataNode::Pointer GetWidgetPlane1() const; mitk::DataNode::Pointer GetWidgetPlane2() const; mitk::DataNode::Pointer GetWidgetPlane3() const; /** * @brief SetDecorationColor Set the color of the decoration of the 4 widgets. * * This is used to color the frame of the renderwindow and the corner annatation. * For the first 3 widgets, this color is a property of the helper object nodes * which contain the respective plane geometry. For widget 4, this is a member, * since there is no data node for this widget. */ void SetDecorationColor(unsigned int widgetNumber, mitk::Color color); /** * @brief GetDecorationColorForWidget Get the color for annotation, crosshair and rectangle. * @param widgetNumber Number of the renderwindow (0-3). * @return Color in mitk format. */ mitk::Color GetDecorationColor(unsigned int widgetNumber); public Q_SLOTS: // mouse events virtual void mousePressEvent(QMouseEvent*) override; virtual void moveEvent(QMoveEvent* e) override; virtual void wheelEvent(QWheelEvent* e) override; void Fit(); void AddDisplayPlaneSubTree(); void EnsureDisplayContainsPoint(mitk::BaseRenderer *renderer, const mitk::Point3D &p); void SetWidgetPlaneVisibility(const char *widgetName, bool visible, mitk::BaseRenderer *renderer = nullptr); void SetWidgetPlanesVisibility(bool visible, mitk::BaseRenderer *renderer = nullptr); Q_SIGNALS: void NotifyCrosshairVisibilityChanged(bool visible); void NotifyCrosshairRotationModeChanged(int mode); void WheelMoved(QWheelEvent *); void Moved(); private: virtual void SetLayoutImpl() override; virtual void SetInteractionSchemeImpl() override { } void CreateRenderWindowWidgets(); - mitk::SliceNavigationController* m_TimeNavigationController; - /** * @brief The 3 helper objects which contain the plane geometry. */ mitk::DataNode::Pointer m_PlaneNode1; mitk::DataNode::Pointer m_PlaneNode2; mitk::DataNode::Pointer m_PlaneNode3; /** * @brief m_ParentNodeForGeometryPlanes This helper object is added to the datastorage * and contains the 3 planes for displaying the image geometry (crosshair and 3D planes). */ mitk::DataNode::Pointer m_ParentNodeForGeometryPlanes; /** * @brief m_DecorationColorWidget4 color for annotation and rectangle of widget 4. * * For other widgets1-3, the color is a property of the respective data node. * There is no node for widget 4, hence, we need an extra member. */ mitk::Color m_DecorationColorWidget4; }; #endif diff --git a/Modules/QtWidgets/src/QmitkMxNMultiWidget.cpp b/Modules/QtWidgets/src/QmitkMxNMultiWidget.cpp index efb6e6e851..55c15a1c4e 100644 --- a/Modules/QtWidgets/src/QmitkMxNMultiWidget.cpp +++ b/Modules/QtWidgets/src/QmitkMxNMultiWidget.cpp @@ -1,633 +1,600 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkMxNMultiWidget.h" // mitk core #include #include #include #include #include #include // mitk qt widget #include #include // qt #include #include #include #include QmitkMxNMultiWidget::QmitkMxNMultiWidget(QWidget* parent, Qt::WindowFlags f/* = 0*/, const QString& multiWidgetName/* = "mxn"*/) : QmitkAbstractMultiWidget(parent, f, multiWidgetName) - , m_TimeNavigationController(nullptr) , m_SynchronizedWidgetConnector(std::make_unique()) , m_CrosshairVisibility(false) { - m_TimeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); } QmitkMxNMultiWidget::~QmitkMxNMultiWidget() { - auto allRenderWindows = this->GetRenderWindows(); - for (auto& renderWindow : allRenderWindows) - { - m_TimeNavigationController->Disconnect(renderWindow->GetSliceNavigationController()); - } } void QmitkMxNMultiWidget::InitializeMultiWidget() { SetLayout(1, 1); SetDisplayActionEventHandler(std::make_unique()); auto displayActionEventHandler = GetDisplayActionEventHandler(); if (nullptr != displayActionEventHandler) { displayActionEventHandler->InitActions(); } this->SetInitialSelection(); } void QmitkMxNMultiWidget::Synchronize(bool synchronized) { if (synchronized) { SetDisplayActionEventHandler(std::make_unique()); } else { SetDisplayActionEventHandler(std::make_unique()); } auto displayActionEventHandler = GetDisplayActionEventHandler(); if (nullptr != displayActionEventHandler) { displayActionEventHandler->InitActions(); } } QmitkRenderWindow* QmitkMxNMultiWidget::GetRenderWindow(const QString& widgetName) const { if ("axial" == widgetName || "sagittal" == widgetName || "coronal" == widgetName || "3d" == widgetName) { return GetActiveRenderWindowWidget()->GetRenderWindow(); } return QmitkAbstractMultiWidget::GetRenderWindow(widgetName); } QmitkRenderWindow* QmitkMxNMultiWidget::GetRenderWindow(const mitk::AnatomicalPlane& /*orientation*/) const { // currently no mapping between plane orientation and render windows // simply return the currently active render window return GetActiveRenderWindowWidget()->GetRenderWindow(); } void QmitkMxNMultiWidget::SetActiveRenderWindowWidget(RenderWindowWidgetPointer activeRenderWindowWidget) { auto currentActiveRenderWindowWidget = GetActiveRenderWindowWidget(); if (currentActiveRenderWindowWidget == activeRenderWindowWidget) { return; } // reset the decoration color of the previously active render window widget if (nullptr != currentActiveRenderWindowWidget) { auto decorationColor = currentActiveRenderWindowWidget->GetDecorationColor(); QColor hexColor(decorationColor[0] * 255, decorationColor[1] * 255, decorationColor[2] * 255); currentActiveRenderWindowWidget->setStyleSheet("QmitkRenderWindowWidget { border: 2px solid " + hexColor.name(QColor::HexRgb) + "; }"); } // set the new decoration color of the currently active render window widget if (nullptr != activeRenderWindowWidget) { activeRenderWindowWidget->setStyleSheet("QmitkRenderWindowWidget { border: 2px solid #FF6464; }"); } QmitkAbstractMultiWidget::SetActiveRenderWindowWidget(activeRenderWindowWidget); } void QmitkMxNMultiWidget::InitializeViews(const mitk::TimeGeometry* geometry, bool resetCamera) { auto* renderingManager = mitk::RenderingManager::GetInstance(); mitk::Point3D currentPosition = mitk::Point3D(); unsigned int imageTimeStep = 0; if (!resetCamera) { // store the current position to set it again later, if the camera should not be reset currentPosition = this->GetSelectedPosition(""); // store the current time step to set it again later, if the camera should not be reset - const auto currentTimePoint = renderingManager->GetTimeNavigationController()->GetSelectedTimePoint(); + const mitk::TimePointType currentTimePoint = renderingManager->GetTimeNavigationController()->GetSelectedTimePoint(); if (geometry->IsValidTimePoint(currentTimePoint)) { imageTimeStep = geometry->TimePointToTimeStep(currentTimePoint); } } // initialize active render window renderingManager->InitializeView( this->GetActiveRenderWindowWidget()->GetRenderWindow()->GetVtkRenderWindow(), geometry, resetCamera); if (!resetCamera) { this->SetSelectedPosition(currentPosition, ""); - renderingManager->GetTimeNavigationController()->GetTime()->SetPos(imageTimeStep); + renderingManager->GetTimeNavigationController()->GetStepper()->SetPos(imageTimeStep); } } void QmitkMxNMultiWidget::SetInteractionReferenceGeometry(const mitk::TimeGeometry* referenceGeometry) { // Set the interaction reference referenceGeometry for all render windows. auto allRenderWindows = this->GetRenderWindows(); for (auto& renderWindow : allRenderWindows) { auto* baseRenderer = mitk::BaseRenderer::GetInstance(renderWindow->GetVtkRenderWindow()); baseRenderer->SetInteractionReferenceGeometry(referenceGeometry); } } bool QmitkMxNMultiWidget::HasCoupledRenderWindows() const { return false; } void QmitkMxNMultiWidget::SetSelectedPosition(const mitk::Point3D& newPosition, const QString& widgetName) { RenderWindowWidgetPointer renderWindowWidget; if (widgetName.isNull() || widgetName.isEmpty()) { renderWindowWidget = GetActiveRenderWindowWidget(); } else { renderWindowWidget = GetRenderWindowWidget(widgetName); } if (nullptr != renderWindowWidget) { renderWindowWidget->GetSliceNavigationController()->SelectSliceByPoint(newPosition); return; } MITK_ERROR << "Position can not be set for an unknown render window widget."; } const mitk::Point3D QmitkMxNMultiWidget::GetSelectedPosition(const QString& widgetName) const { RenderWindowWidgetPointer renderWindowWidget; if (widgetName.isNull() || widgetName.isEmpty()) { renderWindowWidget = GetActiveRenderWindowWidget(); } else { renderWindowWidget = GetRenderWindowWidget(widgetName); } if (nullptr != renderWindowWidget) { return renderWindowWidget->GetCrosshairPosition(); } MITK_ERROR << "Crosshair position can not be retrieved."; return mitk::Point3D(0.0); } void QmitkMxNMultiWidget::SetCrosshairVisibility(bool visible) { // get the specific render window that sent the signal QmitkRenderWindow* renderWindow = qobject_cast(sender()); if (nullptr == renderWindow) { return; } auto renderWindowWidget = this->GetRenderWindowWidget(renderWindow); renderWindowWidget->SetCrosshairVisibility(visible); } bool QmitkMxNMultiWidget::GetCrosshairVisibility() const { // get the specific render window that sent the signal QmitkRenderWindow* renderWindow = qobject_cast(sender()); if (nullptr == renderWindow) { return false; } auto renderWindowWidget = this->GetRenderWindowWidget(renderWindow); return renderWindowWidget->GetCrosshairVisibility(); } void QmitkMxNMultiWidget::SetCrosshairGap(unsigned int gapSize) { auto renderWindowWidgets = this->GetRenderWindowWidgets(); for (const auto& renderWindowWidget : renderWindowWidgets) { renderWindowWidget.second->SetCrosshairGap(gapSize); } } void QmitkMxNMultiWidget::ResetCrosshair() { auto dataStorage = GetDataStorage(); if (nullptr == dataStorage) { return; } // get the specific render window that sent the signal QmitkRenderWindow* renderWindow = qobject_cast(sender()); if (nullptr == renderWindow) { return; } mitk::RenderingManager::GetInstance()->InitializeViewByBoundingObjects(renderWindow->GetVtkRenderWindow(), dataStorage); SetWidgetPlaneMode(mitk::InteractionSchemeSwitcher::MITKStandard); } void QmitkMxNMultiWidget::SetWidgetPlaneMode(int userMode) { MITK_DEBUG << "Changing crosshair mode to " << userMode; switch (userMode) { case 0: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKStandard); break; case 1: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKRotationUncoupled); break; case 2: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKRotationCoupled); break; case 3: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKSwivel); break; } } -mitk::SliceNavigationController* QmitkMxNMultiWidget::GetTimeNavigationController() -{ - return m_TimeNavigationController; -} - void QmitkMxNMultiWidget::EnableCrosshair() { auto renderWindowWidgets = this->GetRenderWindowWidgets(); for (const auto& renderWindowWidget : renderWindowWidgets) { renderWindowWidget.second->EnableCrosshair(); } } void QmitkMxNMultiWidget::DisableCrosshair() { auto renderWindowWidgets = this->GetRenderWindowWidgets(); for (const auto& renderWindowWidget : renderWindowWidgets) { renderWindowWidget.second->DisableCrosshair(); } } ////////////////////////////////////////////////////////////////////////// // PUBLIC SLOTS // MOUSE EVENTS ////////////////////////////////////////////////////////////////////////// void QmitkMxNMultiWidget::wheelEvent(QWheelEvent* e) { emit WheelMoved(e); } void QmitkMxNMultiWidget::mousePressEvent(QMouseEvent*) { // nothing here, but necessary for mouse interactions (.xml-configuration files) } void QmitkMxNMultiWidget::moveEvent(QMoveEvent* e) { QWidget::moveEvent(e); // it is necessary to readjust the position of the overlays as the MultiWidget has moved // unfortunately it's not done by QmitkRenderWindow::moveEvent -> must be done here emit Moved(); } -void QmitkMxNMultiWidget::RemoveRenderWindowWidget() -{ - auto renderWindowWidgets = this->GetRenderWindowWidgets(); - auto iterator = renderWindowWidgets.find(this->GetNameFromIndex(this->GetNumberOfRenderWindowWidgets() - 1)); - if (iterator == renderWindowWidgets.end()) - { - return; - } - - // disconnect each signal of this render window widget - RenderWindowWidgetPointer renderWindowWidgetToRemove = iterator->second; - m_TimeNavigationController->Disconnect(renderWindowWidgetToRemove->GetSliceNavigationController()); - - QmitkAbstractMultiWidget::RemoveRenderWindowWidget(); -} - ////////////////////////////////////////////////////////////////////////// // PRIVATE ////////////////////////////////////////////////////////////////////////// void QmitkMxNMultiWidget::SetLayoutImpl() { int requiredRenderWindowWidgets = GetRowCount() * GetColumnCount(); int existingRenderWindowWidgets = GetRenderWindowWidgets().size(); int difference = requiredRenderWindowWidgets - existingRenderWindowWidgets; while (0 < difference) { // more render window widgets needed CreateRenderWindowWidget(); --difference; } while (0 > difference) { // less render window widgets needed RemoveRenderWindowWidget(); ++difference; } auto firstRenderWindowWidget = GetFirstRenderWindowWidget(); if (nullptr != firstRenderWindowWidget) { SetActiveRenderWindowWidget(firstRenderWindowWidget); } GetMultiWidgetLayoutManager()->SetLayoutDesign(QmitkMultiWidgetLayoutManager::LayoutDesign::DEFAULT); } QmitkAbstractMultiWidget::RenderWindowWidgetPointer QmitkMxNMultiWidget::CreateRenderWindowWidget() { // create the render window widget and connect signal / slot QString renderWindowWidgetName = GetNameFromIndex(GetNumberOfRenderWindowWidgets()); RenderWindowWidgetPointer renderWindowWidget = std::make_shared(this, renderWindowWidgetName, GetDataStorage()); renderWindowWidget->SetCornerAnnotationText(renderWindowWidgetName.toStdString()); AddRenderWindowWidget(renderWindowWidgetName, renderWindowWidget); auto renderWindow = renderWindowWidget->GetRenderWindow(); QmitkRenderWindowUtilityWidget* utilityWidget = new QmitkRenderWindowUtilityWidget(this, renderWindow, GetDataStorage()); renderWindowWidget->AddUtilityWidget(utilityWidget); connect(utilityWidget, &QmitkRenderWindowUtilityWidget::SynchronizationToggled, this, &QmitkMxNMultiWidget::ToggleSynchronization); connect(this, &QmitkMxNMultiWidget::UpdateUtilityWidgetViewPlanes, utilityWidget, &QmitkRenderWindowUtilityWidget::UpdateViewPlaneSelection); // needs to be done after 'QmitkRenderWindowUtilityWidget::ToggleSynchronization' has been connected // initially synchronize the node selection widget utilityWidget->ToggleSynchronization(true); auto layoutManager = GetMultiWidgetLayoutManager(); connect(renderWindow, &QmitkRenderWindow::LayoutDesignChanged, layoutManager, &QmitkMultiWidgetLayoutManager::SetLayoutDesign); connect(renderWindow, &QmitkRenderWindow::ResetView, this, &QmitkMxNMultiWidget::ResetCrosshair); connect(renderWindow, &QmitkRenderWindow::CrosshairVisibilityChanged, this, &QmitkMxNMultiWidget::SetCrosshairVisibility); connect(renderWindow, &QmitkRenderWindow::CrosshairRotationModeChanged, this, &QmitkMxNMultiWidget::SetWidgetPlaneMode); - // connect time navigation controller to react on referenceGeometry time events with the render window's slice naviation controller - m_TimeNavigationController->ConnectGeometryTimeEvent(renderWindow->GetSliceNavigationController()); - // reverse connection between the render window's slice navigation controller and the time navigation controller - renderWindow->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); - return renderWindowWidget; } void QmitkMxNMultiWidget::LoadLayout(const nlohmann::json* jsonData) { if ((*jsonData).is_null()) { QMessageBox::warning(this, "Load layout", "Could not read window layout"); return; } unsigned int windowCounter = 0; try { auto version = jsonData->at("version").get(); if (version != "1.0") { QMessageBox::warning(this, "Load layout", "Unknown layout version, could not load"); return; } delete this->layout(); auto content = BuildLayoutFromJSON(jsonData, &windowCounter); auto hBoxLayout = new QHBoxLayout(this); this->setLayout(hBoxLayout); hBoxLayout->addWidget(content); emit UpdateUtilityWidgetViewPlanes(); } catch (nlohmann::json::out_of_range& e) { MITK_ERROR << "Error in loading window layout from JSON: " << e.what(); return; } while (GetNumberOfRenderWindowWidgets() > windowCounter) { RemoveRenderWindowWidget(); } EnableCrosshair(); emit LayoutChanged(); } void QmitkMxNMultiWidget::SaveLayout(std::ostream* outStream) { if (outStream == nullptr) { return; } auto layout = this->layout(); if (layout == nullptr) return; // There should only ever be one item: a splitter auto widget = layout->itemAt(0)->widget(); auto splitter = dynamic_cast(widget); if (!splitter) { MITK_ERROR << "Tried to save unexpected layout format. Make sure the layout of this instance contains a single QSplitter."; return; } auto layoutJSON = BuildJSONFromLayout(splitter); layoutJSON["version"] = "1.0"; layoutJSON["name"] = "Custom Layout"; *outStream << std::setw(4) << layoutJSON << std::endl; } nlohmann::json QmitkMxNMultiWidget::BuildJSONFromLayout(const QSplitter* splitter) { nlohmann::json resultJSON; resultJSON["isWindow"] = false; resultJSON["vertical"] = (splitter->orientation() == Qt::Vertical) ? true : false; auto sizes = splitter->sizes(); auto content = nlohmann::json::array(); auto countSplitter = splitter->count(); for (int i = 0; i < countSplitter; ++i) { auto widget = splitter->widget(i); nlohmann::json widgetJSON; if (auto widgetSplitter = dynamic_cast(widget); widgetSplitter) { widgetJSON = BuildJSONFromLayout(widgetSplitter); } else if (auto widgetWindow = dynamic_cast(widget); widgetWindow) { widgetJSON["isWindow"] = true; widgetJSON["viewDirection"] = widgetWindow->GetSliceNavigationController()->GetViewDirectionAsString(); } widgetJSON["size"] = sizes[i]; content.push_back(widgetJSON); } resultJSON["content"] = content; return resultJSON; } QSplitter* QmitkMxNMultiWidget::BuildLayoutFromJSON(const nlohmann::json* jsonData, unsigned int* windowCounter, QSplitter* parentSplitter) { bool vertical = jsonData->at("vertical").get(); auto orientation = vertical ? Qt::Vertical : Qt::Horizontal; auto split = new QSplitter(orientation, parentSplitter); QList sizes; for (auto object : jsonData->at("content")) { bool isWindow = object["isWindow"].get(); int size = object["size"].get(); sizes.append(size); if (isWindow) { auto viewDirection = object["viewDirection"].get(); mitk::AnatomicalPlane viewPlane = mitk::AnatomicalPlane::Sagittal; if (viewDirection == "Axial") { viewPlane = mitk::AnatomicalPlane::Axial; } else if (viewDirection == "Coronal") { viewPlane = mitk::AnatomicalPlane::Coronal; } else if (viewDirection == "Original") { viewPlane = mitk::AnatomicalPlane::Original; } else if (viewDirection == "Sagittal") { viewPlane = mitk::AnatomicalPlane::Sagittal; } QmitkAbstractMultiWidget::RenderWindowWidgetPointer window = nullptr; QString renderWindowName; QmitkAbstractMultiWidget::RenderWindowWidgetMap::iterator it; // repurpose existing render windows as far as they already exist if (*windowCounter < GetRenderWindowWidgets().size()) { renderWindowName = this->GetNameFromIndex(*windowCounter); auto renderWindowWidgets = GetRenderWindowWidgets(); it = renderWindowWidgets.find(renderWindowName); if (it != renderWindowWidgets.end()) { window = it->second; } else { MITK_ERROR << "Could not find render window " << renderWindowName.toStdString() << ", although it should be there."; } } if (window == nullptr) { window = CreateRenderWindowWidget(); } window->GetSliceNavigationController()->SetDefaultViewDirection(viewPlane); window->GetSliceNavigationController()->Update(); split->addWidget(window.get()); window->show(); (*windowCounter)++; } else { auto subSplitter = BuildLayoutFromJSON(&object, windowCounter, split); split->addWidget(subSplitter); } } split->setSizes(sizes); return split; } void QmitkMxNMultiWidget::SetInitialSelection() { auto dataStorage = this->GetDataStorage(); if (nullptr == dataStorage) { return; } mitk::NodePredicateAnd::Pointer noHelperObjects = mitk::NodePredicateAnd::New(); noHelperObjects->AddPredicate(mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("helper object"))); noHelperObjects->AddPredicate(mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("hidden object"))); auto allNodes = dataStorage->GetSubset(noHelperObjects); QmitkSynchronizedNodeSelectionWidget::NodeList currentSelection; for (auto& node : *allNodes) { currentSelection.append(node); } m_SynchronizedWidgetConnector->ChangeSelection(currentSelection); } void QmitkMxNMultiWidget::ToggleSynchronization(QmitkSynchronizedNodeSelectionWidget* synchronizedWidget) { bool synchronized = synchronizedWidget->IsSynchronized(); if (synchronized) { m_SynchronizedWidgetConnector->ConnectWidget(synchronizedWidget); m_SynchronizedWidgetConnector->SynchronizeWidget(synchronizedWidget); } else { m_SynchronizedWidgetConnector->DisconnectWidget(synchronizedWidget); } } diff --git a/Modules/QtWidgets/src/QmitkRenderWindowMenu.cpp b/Modules/QtWidgets/src/QmitkRenderWindowMenu.cpp index ece6a28e45..0ea68a3046 100644 --- a/Modules/QtWidgets/src/QmitkRenderWindowMenu.cpp +++ b/Modules/QtWidgets/src/QmitkRenderWindowMenu.cpp @@ -1,578 +1,578 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkRenderWindowMenu.h" // mitk core #include "mitkProperties.h" #include "mitkResliceMethodProperty.h" // qt #include #include #include #include #include #include #include #include #include //#include"iconClose.xpm" #include "iconCrosshairMode.xpm" #include "iconFullScreen.xpm" //#include"iconHoriSplit.xpm" #include "iconSettings.xpm" //#include"iconVertiSplit.xpm" #include "iconLeaveFullScreen.xpm" // c++ #include unsigned int QmitkRenderWindowMenu::m_DefaultThickMode(1); QmitkRenderWindowMenu::QmitkRenderWindowMenu(QWidget* parent, Qt::WindowFlags flags, mitk::BaseRenderer* baseRenderer) : QWidget(parent, flags) , m_LayoutActionsMenu(nullptr) , m_CrosshairMenu(nullptr) , m_FullScreenMode(false) , m_Renderer(baseRenderer) , m_Parent(parent) , m_CrosshairRotationMode(0) , m_CrosshairVisibility(true) , m_Layout(LayoutIndex::Axial) , m_LayoutDesign(LayoutDesign::DEFAULT) , m_OldLayoutDesign(LayoutDesign::DEFAULT) { CreateMenuWidget(); setMinimumWidth(61); // DIRTY.. If you add or remove a button, you need to change the size. setMaximumWidth(61); setAutoFillBackground(true); this->hide(); m_AutoRotationTimer = new QTimer(this); m_AutoRotationTimer->setInterval(75); connect(m_AutoRotationTimer, &QTimer::timeout, this, &QmitkRenderWindowMenu::AutoRotateNextStep); connect(m_Parent, &QObject::destroyed, this, &QmitkRenderWindowMenu::deleteLater); } QmitkRenderWindowMenu::~QmitkRenderWindowMenu() { if (m_AutoRotationTimer->isActive()) { m_AutoRotationTimer->stop(); } } void QmitkRenderWindowMenu::SetLayoutIndex(LayoutIndex layoutIndex) { m_Layout = layoutIndex; } void QmitkRenderWindowMenu::UpdateLayoutDesignList(LayoutDesign layoutDesign) { m_LayoutDesign = layoutDesign; if (nullptr == m_LayoutActionsMenu) { CreateSettingsWidget(); } m_DefaultLayoutAction->setEnabled(true); m_All2DTop3DBottomLayoutAction->setEnabled(true); m_All2DLeft3DRightLayoutAction->setEnabled(true); m_OneBigLayoutAction->setEnabled(true); m_Only2DHorizontalLayoutAction->setEnabled(true); m_Only2DVerticalLayoutAction->setEnabled(true); m_OneTop3DBottomLayoutAction->setEnabled(true); m_OneLeft3DRightLayoutAction->setEnabled(true); m_AllHorizontalLayoutAction->setEnabled(true); m_AllVerticalLayoutAction->setEnabled(true); m_RemoveOneLayoutAction->setEnabled(true); switch (m_LayoutDesign) { case LayoutDesign::DEFAULT: { m_DefaultLayoutAction->setEnabled(false); break; } case LayoutDesign::ALL_2D_TOP_3D_BOTTOM: { m_All2DTop3DBottomLayoutAction->setEnabled(false); break; } case LayoutDesign::ALL_2D_LEFT_3D_RIGHT: { m_All2DLeft3DRightLayoutAction->setEnabled(false); break; } case LayoutDesign::ONE_BIG: { m_OneBigLayoutAction->setEnabled(false); break; } case LayoutDesign::ONLY_2D_HORIZONTAL: { m_Only2DHorizontalLayoutAction->setEnabled(false); break; } case LayoutDesign::ONLY_2D_VERTICAL: { m_Only2DVerticalLayoutAction->setEnabled(false); break; } case LayoutDesign::ONE_TOP_3D_BOTTOM: { m_OneTop3DBottomLayoutAction->setEnabled(false); break; } case LayoutDesign::ONE_LEFT_3D_RIGHT: { m_OneLeft3DRightLayoutAction->setEnabled(false); break; } case LayoutDesign::ALL_HORIZONTAL: { m_AllHorizontalLayoutAction->setEnabled(false); break; } case LayoutDesign::ALL_VERTICAL: { m_AllVerticalLayoutAction->setEnabled(false); break; } case LayoutDesign::REMOVE_ONE: { m_RemoveOneLayoutAction->setEnabled(false); break; } case LayoutDesign::NONE: { break; } } } void QmitkRenderWindowMenu::UpdateCrosshairVisibility(bool visible) { m_CrosshairVisibility = visible; } void QmitkRenderWindowMenu::UpdateCrosshairRotationMode(int mode) { m_CrosshairRotationMode = mode; } void QmitkRenderWindowMenu::MoveWidgetToCorrectPos() { int moveX = floor(static_cast(this->m_Parent->width()) - static_cast(this->width()) - 4.0); this->move(moveX, 3); auto cursorPos = this->mapFromGlobal(QCursor::pos()); if (cursorPos.x() < 0 || cursorPos.x() >= this->width() || cursorPos.y() < 0 || cursorPos.y() >= this->height()) { this->HideMenu(); } else { this->ShowMenu(); } } void QmitkRenderWindowMenu::ShowMenu() { MITK_DEBUG << "menu showMenu"; this->show(); this->raise(); } void QmitkRenderWindowMenu::HideMenu() { MITK_DEBUG << "menu hideEvent"; this->hide(); } void QmitkRenderWindowMenu::paintEvent(QPaintEvent * /*e*/) { QPainter painter(this); QColor semiTransparentColor = Qt::black; semiTransparentColor.setAlpha(255); painter.fillRect(rect(), semiTransparentColor); } void QmitkRenderWindowMenu::CreateMenuWidget() { QHBoxLayout *layout = new QHBoxLayout(this); layout->setAlignment(Qt::AlignRight); layout->setContentsMargins(1, 1, 1, 1); QSize size(13, 13); m_CrosshairMenu = new QMenu(this); connect(m_CrosshairMenu, &QMenu::aboutToShow, this, &QmitkRenderWindowMenu::OnCrosshairMenuAboutToShow); m_CrosshairModeButton = new QToolButton(this); m_CrosshairModeButton->setMaximumSize(15, 15); m_CrosshairModeButton->setIconSize(size); m_CrosshairModeButton->setMenu(m_CrosshairMenu); m_CrosshairModeButton->setIcon(QIcon(QPixmap(iconCrosshairMode_xpm))); m_CrosshairModeButton->setPopupMode(QToolButton::InstantPopup); m_CrosshairModeButton->setStyleSheet("QToolButton::menu-indicator { image: none; }"); m_CrosshairModeButton->setAutoRaise(true); layout->addWidget(m_CrosshairModeButton); m_FullScreenButton = new QToolButton(this); m_FullScreenButton->setMaximumSize(15, 15); m_FullScreenButton->setIconSize(size); m_FullScreenButton->setIcon(QIcon(QPixmap(iconFullScreen_xpm))); m_FullScreenButton->setAutoRaise(true); layout->addWidget(m_FullScreenButton); m_LayoutDesignButton = new QToolButton(this); m_LayoutDesignButton->setMaximumSize(15, 15); m_LayoutDesignButton->setIconSize(size); m_LayoutDesignButton->setIcon(QIcon(QPixmap(iconSettings_xpm))); m_LayoutDesignButton->setAutoRaise(true); layout->addWidget(m_LayoutDesignButton); connect(m_FullScreenButton, &QToolButton::clicked, this, &QmitkRenderWindowMenu::OnFullScreenButton); connect(m_LayoutDesignButton, &QToolButton::clicked, this, &QmitkRenderWindowMenu::OnLayoutDesignButton); } void QmitkRenderWindowMenu::CreateSettingsWidget() { m_LayoutActionsMenu = new QMenu(this); m_DefaultLayoutAction = new QAction("Standard layout", m_LayoutActionsMenu); m_DefaultLayoutAction->setDisabled(true); m_All2DTop3DBottomLayoutAction = new QAction("All 2D top, 3D bottom", m_LayoutActionsMenu); m_All2DTop3DBottomLayoutAction->setDisabled(false); m_All2DLeft3DRightLayoutAction = new QAction("All 2D left, 3D right", m_LayoutActionsMenu); m_All2DLeft3DRightLayoutAction->setDisabled(false); m_OneBigLayoutAction = new QAction("This big", m_LayoutActionsMenu); m_OneBigLayoutAction->setDisabled(false); m_Only2DHorizontalLayoutAction = new QAction("Only 2D horizontal", m_LayoutActionsMenu); m_Only2DHorizontalLayoutAction->setDisabled(false); m_Only2DVerticalLayoutAction = new QAction("Only 2D vertical", m_LayoutActionsMenu); m_Only2DVerticalLayoutAction->setDisabled(false); m_OneTop3DBottomLayoutAction = new QAction("This top, 3D bottom", m_LayoutActionsMenu); m_OneTop3DBottomLayoutAction->setDisabled(false); m_OneLeft3DRightLayoutAction = new QAction("This left, 3D right", m_LayoutActionsMenu); m_OneLeft3DRightLayoutAction->setDisabled(false); m_AllHorizontalLayoutAction = new QAction("All horizontal", m_LayoutActionsMenu); m_AllHorizontalLayoutAction->setDisabled(false); m_AllVerticalLayoutAction = new QAction("All vertical", m_LayoutActionsMenu); m_AllVerticalLayoutAction->setDisabled(false); m_RemoveOneLayoutAction = new QAction("Remove this", m_LayoutActionsMenu); m_RemoveOneLayoutAction->setDisabled(false); m_LayoutActionsMenu->addAction(m_DefaultLayoutAction); m_LayoutActionsMenu->addAction(m_All2DTop3DBottomLayoutAction); m_LayoutActionsMenu->addAction(m_All2DLeft3DRightLayoutAction); m_LayoutActionsMenu->addAction(m_OneBigLayoutAction); m_LayoutActionsMenu->addAction(m_Only2DHorizontalLayoutAction); m_LayoutActionsMenu->addAction(m_Only2DVerticalLayoutAction); m_LayoutActionsMenu->addAction(m_OneTop3DBottomLayoutAction); m_LayoutActionsMenu->addAction(m_OneLeft3DRightLayoutAction); m_LayoutActionsMenu->addAction(m_AllHorizontalLayoutAction); m_LayoutActionsMenu->addAction(m_AllVerticalLayoutAction); m_LayoutActionsMenu->addAction(m_RemoveOneLayoutAction); m_LayoutActionsMenu->setVisible(false); connect(m_DefaultLayoutAction, &QAction::triggered, [this]() { this->OnSetLayout(LayoutDesign::DEFAULT); }); connect(m_All2DTop3DBottomLayoutAction, &QAction::triggered, [this]() { this->OnSetLayout(LayoutDesign::ALL_2D_TOP_3D_BOTTOM); }); connect(m_All2DLeft3DRightLayoutAction, &QAction::triggered, [this]() { this->OnSetLayout(LayoutDesign::ALL_2D_LEFT_3D_RIGHT); }); connect(m_OneBigLayoutAction, &QAction::triggered, [this]() { this->OnSetLayout(LayoutDesign::ONE_BIG); }); connect(m_Only2DHorizontalLayoutAction, &QAction::triggered, [this]() { this->OnSetLayout(LayoutDesign::ONLY_2D_HORIZONTAL); }); connect(m_Only2DVerticalLayoutAction, &QAction::triggered, [this]() { this->OnSetLayout(LayoutDesign::ONLY_2D_VERTICAL); }); connect(m_OneTop3DBottomLayoutAction, &QAction::triggered, [this]() { this->OnSetLayout(LayoutDesign::ONE_TOP_3D_BOTTOM); }); connect(m_OneLeft3DRightLayoutAction, &QAction::triggered, [this]() { this->OnSetLayout(LayoutDesign::ONE_LEFT_3D_RIGHT); }); connect(m_AllHorizontalLayoutAction, &QAction::triggered, [this]() { this->OnSetLayout(LayoutDesign::ALL_HORIZONTAL); }); connect(m_AllVerticalLayoutAction, &QAction::triggered, [this]() { this->OnSetLayout(LayoutDesign::ALL_VERTICAL); }); connect(m_RemoveOneLayoutAction, &QAction::triggered, [this]() { this->OnSetLayout(LayoutDesign::REMOVE_ONE); }); } void QmitkRenderWindowMenu::ChangeFullScreenIcon() { m_FullScreenButton->setIcon(m_FullScreenMode ? QPixmap(iconLeaveFullScreen_xpm) : QPixmap(iconFullScreen_xpm)); } void QmitkRenderWindowMenu::AutoRotateNextStep() { if (m_Renderer->GetCameraRotationController()) { - m_Renderer->GetCameraRotationController()->GetSlice()->Next(); + m_Renderer->GetCameraRotationController()->GetStepper()->Next(); } } void QmitkRenderWindowMenu::OnAutoRotationActionTriggered() { if (m_AutoRotationTimer->isActive()) { m_AutoRotationTimer->stop(); - m_Renderer->GetCameraRotationController()->GetSlice()->PingPongOff(); + m_Renderer->GetCameraRotationController()->GetStepper()->PingPongOff(); } else { - m_Renderer->GetCameraRotationController()->GetSlice()->PingPongOn(); + m_Renderer->GetCameraRotationController()->GetStepper()->PingPongOn(); m_AutoRotationTimer->start(); } } void QmitkRenderWindowMenu::OnTSNumChanged(int num) { MITK_DEBUG << "Thickslices num: " << num << " on renderer " << m_Renderer.GetPointer(); if (m_Renderer.IsNotNull()) { unsigned int thickSlicesMode = 0; // determine the state of the thick-slice mode mitk::ResliceMethodProperty *resliceMethodEnumProperty = nullptr; if(m_Renderer->GetCurrentWorldPlaneGeometryNode()->GetProperty(resliceMethodEnumProperty, "reslice.thickslices") && resliceMethodEnumProperty) { thickSlicesMode = resliceMethodEnumProperty->GetValueAsId(); if(thickSlicesMode!=0) m_DefaultThickMode = thickSlicesMode; } if(thickSlicesMode==0 && num>0) //default mode only for single slices { thickSlicesMode = m_DefaultThickMode; //mip default m_Renderer->GetCurrentWorldPlaneGeometryNode()->SetProperty("reslice.thickslices.showarea", mitk::BoolProperty::New(true)); } if(num<1) { thickSlicesMode = 0; m_Renderer->GetCurrentWorldPlaneGeometryNode()->SetProperty("reslice.thickslices.showarea", mitk::BoolProperty::New(false)); } m_Renderer->GetCurrentWorldPlaneGeometryNode()->SetProperty("reslice.thickslices", mitk::ResliceMethodProperty::New(thickSlicesMode)); m_Renderer->GetCurrentWorldPlaneGeometryNode()->SetProperty("reslice.thickslices.num", mitk::IntProperty::New(num)); m_TSLabel->setText(QString::number(num * 2 + 1)); m_Renderer->SendUpdateSlice(); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } } void QmitkRenderWindowMenu::OnCrosshairMenuAboutToShow() { QMenu *crosshairModesMenu = m_CrosshairMenu; crosshairModesMenu->clear(); QAction *resetViewAction = new QAction(crosshairModesMenu); resetViewAction->setText("Reset view"); crosshairModesMenu->addAction(resetViewAction); connect(resetViewAction, &QAction::triggered, this, &QmitkRenderWindowMenu::ResetView); // Show hide crosshairs { QAction *showHideCrosshairVisibilityAction = new QAction(crosshairModesMenu); showHideCrosshairVisibilityAction->setText("Show crosshair"); showHideCrosshairVisibilityAction->setCheckable(true); showHideCrosshairVisibilityAction->setChecked(m_CrosshairVisibility); crosshairModesMenu->addAction(showHideCrosshairVisibilityAction); connect(showHideCrosshairVisibilityAction, &QAction::toggled, this, &QmitkRenderWindowMenu::OnCrosshairVisibilityChanged); } // Rotation mode { QAction *rotationGroupSeparator = new QAction(crosshairModesMenu); rotationGroupSeparator->setSeparator(true); rotationGroupSeparator->setText("Rotation mode"); crosshairModesMenu->addAction(rotationGroupSeparator); QActionGroup *rotationModeActionGroup = new QActionGroup(crosshairModesMenu); rotationModeActionGroup->setExclusive(true); QAction *noCrosshairRotation = new QAction(crosshairModesMenu); noCrosshairRotation->setActionGroup(rotationModeActionGroup); noCrosshairRotation->setText("No crosshair rotation"); noCrosshairRotation->setCheckable(true); noCrosshairRotation->setChecked(m_CrosshairRotationMode == 0); noCrosshairRotation->setData(0); crosshairModesMenu->addAction(noCrosshairRotation); QAction *singleCrosshairRotation = new QAction(crosshairModesMenu); singleCrosshairRotation->setActionGroup(rotationModeActionGroup); singleCrosshairRotation->setText("Crosshair rotation"); singleCrosshairRotation->setCheckable(true); singleCrosshairRotation->setChecked(m_CrosshairRotationMode == 1); singleCrosshairRotation->setData(1); crosshairModesMenu->addAction(singleCrosshairRotation); QAction *coupledCrosshairRotation = new QAction(crosshairModesMenu); coupledCrosshairRotation->setActionGroup(rotationModeActionGroup); coupledCrosshairRotation->setText("Coupled crosshair rotation"); coupledCrosshairRotation->setCheckable(true); coupledCrosshairRotation->setChecked(m_CrosshairRotationMode == 2); coupledCrosshairRotation->setData(2); crosshairModesMenu->addAction(coupledCrosshairRotation); QAction *swivelMode = new QAction(crosshairModesMenu); swivelMode->setActionGroup(rotationModeActionGroup); swivelMode->setText("Swivel mode"); swivelMode->setCheckable(true); swivelMode->setChecked(m_CrosshairRotationMode == 3); swivelMode->setData(3); crosshairModesMenu->addAction(swivelMode); connect(rotationModeActionGroup, &QActionGroup::triggered, this, &QmitkRenderWindowMenu::OnCrosshairRotationModeSelected); } // auto rotation support if (m_Renderer.IsNotNull() && m_Renderer->GetMapperID() == mitk::BaseRenderer::Standard3D) { QAction *autoRotationGroupSeparator = new QAction(crosshairModesMenu); autoRotationGroupSeparator->setSeparator(true); crosshairModesMenu->addAction(autoRotationGroupSeparator); QAction *autoRotationAction = crosshairModesMenu->addAction("Auto Rotation"); autoRotationAction->setCheckable(true); autoRotationAction->setChecked(m_AutoRotationTimer->isActive()); connect(autoRotationAction, &QAction::triggered, this, &QmitkRenderWindowMenu::OnAutoRotationActionTriggered); } // Thickslices support if (m_Renderer.IsNotNull() && m_Renderer->GetMapperID() == mitk::BaseRenderer::Standard2D) { QAction *thickSlicesGroupSeparator = new QAction(crosshairModesMenu); thickSlicesGroupSeparator->setSeparator(true); thickSlicesGroupSeparator->setText("ThickSlices mode"); crosshairModesMenu->addAction(thickSlicesGroupSeparator); QActionGroup *thickSlicesActionGroup = new QActionGroup(crosshairModesMenu); thickSlicesActionGroup->setExclusive(true); int currentMode = 0; { mitk::ResliceMethodProperty::Pointer m = dynamic_cast( m_Renderer->GetCurrentWorldPlaneGeometryNode()->GetProperty("reslice.thickslices")); if (m.IsNotNull()) currentMode = m->GetValueAsId(); } int currentNum = 1; { mitk::IntProperty::Pointer m = dynamic_cast( m_Renderer->GetCurrentWorldPlaneGeometryNode()->GetProperty("reslice.thickslices.num")); if (m.IsNotNull()) { currentNum = m->GetValue(); } } if (currentMode == 0) currentNum = 0; QSlider *m_TSSlider = new QSlider(crosshairModesMenu); m_TSSlider->setMinimum(0); m_TSSlider->setMaximum(50); m_TSSlider->setValue(currentNum); m_TSSlider->setOrientation(Qt::Horizontal); connect(m_TSSlider, &QSlider::valueChanged, this, &QmitkRenderWindowMenu::OnTSNumChanged); QHBoxLayout *tsLayout = new QHBoxLayout; tsLayout->setContentsMargins(4, 4, 4, 4); tsLayout->addWidget(new QLabel("TS: ")); tsLayout->addWidget(m_TSSlider); tsLayout->addWidget(m_TSLabel = new QLabel(QString::number(currentNum * 2 + 1), this)); QWidget *tsWidget = new QWidget; tsWidget->setLayout(tsLayout); QWidgetAction *m_TSSliderAction = new QWidgetAction(crosshairModesMenu); m_TSSliderAction->setDefaultWidget(tsWidget); crosshairModesMenu->addAction(m_TSSliderAction); } } void QmitkRenderWindowMenu::OnCrosshairVisibilityChanged(bool visible) { UpdateCrosshairVisibility(visible); emit CrosshairVisibilityChanged(m_CrosshairVisibility); } void QmitkRenderWindowMenu::OnCrosshairRotationModeSelected(QAction *action) { UpdateCrosshairRotationMode(action->data().toInt()); emit CrosshairRotationModeChanged(m_CrosshairRotationMode); } void QmitkRenderWindowMenu::OnFullScreenButton(bool /*checked*/) { if (!m_FullScreenMode) { m_FullScreenMode = true; m_OldLayoutDesign = m_LayoutDesign; emit LayoutDesignChanged(LayoutDesign::ONE_BIG); } else { m_FullScreenMode = false; emit LayoutDesignChanged(m_OldLayoutDesign); } MoveWidgetToCorrectPos(); ChangeFullScreenIcon(); ShowMenu(); } void QmitkRenderWindowMenu::OnLayoutDesignButton(bool /*checked*/) { if (nullptr == m_LayoutActionsMenu) { CreateSettingsWidget(); } QPoint point = mapToGlobal(m_LayoutDesignButton->geometry().topLeft()); m_LayoutActionsMenu->setVisible(true); m_LayoutActionsMenu->exec(point); } void QmitkRenderWindowMenu::OnSetLayout(LayoutDesign layoutDesign) { m_FullScreenMode = false; ChangeFullScreenIcon(); m_LayoutDesign = layoutDesign; emit LayoutDesignChanged(m_LayoutDesign); ShowMenu(); } diff --git a/Modules/QtWidgets/src/QmitkRenderWindowUtilityWidget.cpp b/Modules/QtWidgets/src/QmitkRenderWindowUtilityWidget.cpp index 9e08a160f7..ce0614d60b 100644 --- a/Modules/QtWidgets/src/QmitkRenderWindowUtilityWidget.cpp +++ b/Modules/QtWidgets/src/QmitkRenderWindowUtilityWidget.cpp @@ -1,181 +1,181 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkRenderWindowUtilityWidget.h" #include // mitk core #include #include #include #include // mitk qt widgets #include #include // itk #include QmitkRenderWindowUtilityWidget::QmitkRenderWindowUtilityWidget( QWidget* parent/* = nullptr */, QmitkRenderWindow* renderWindow/* = nullptr */, mitk::DataStorage* dataStorage/* = nullptr */) : m_NodeSelectionWidget(nullptr) , m_SliceNavigationWidget(nullptr) , m_StepperAdapter(nullptr) , m_ViewDirectionSelector(nullptr) { this->setParent(parent); auto layout = new QHBoxLayout(this); layout->setMargin(0); mitk::NodePredicateAnd::Pointer noHelperObjects = mitk::NodePredicateAnd::New(); noHelperObjects->AddPredicate(mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("helper object"))); noHelperObjects->AddPredicate(mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("hidden object"))); m_BaseRenderer = mitk::BaseRenderer::GetInstance(renderWindow->GetVtkRenderWindow()); m_NodeSelectionWidget = new QmitkSynchronizedNodeSelectionWidget(parent); m_NodeSelectionWidget->SetBaseRenderer(m_BaseRenderer); m_NodeSelectionWidget->SetDataStorage(dataStorage); m_NodeSelectionWidget->SetNodePredicate(noHelperObjects); auto menuBar = new QMenuBar(this); menuBar->setSizePolicy(QSizePolicy::Minimum, QSizePolicy::Preferred); auto dataMenu = menuBar->addMenu("Data"); QWidgetAction* dataAction = new QWidgetAction(dataMenu); dataAction->setDefaultWidget(m_NodeSelectionWidget); dataMenu->addAction(dataAction); layout->addWidget(menuBar); auto* synchPushButton = new QPushButton(this); auto* synchIcon = new QIcon(); auto synchronizeSvg = QmitkStyleManager::ThemeIcon(QLatin1String(":/Qmitk/lock.svg")); auto desynchronizeSvg = QmitkStyleManager::ThemeIcon(QLatin1String(":/Qmitk/unlock.svg")); synchIcon->addPixmap(synchronizeSvg.pixmap(64), QIcon::Normal, QIcon::On); synchIcon->addPixmap(desynchronizeSvg.pixmap(64), QIcon::Normal, QIcon::Off); synchPushButton->setIcon(*synchIcon); synchPushButton->setToolTip("Synchronize / desynchronize data management"); synchPushButton->setCheckable(true); synchPushButton->setChecked(true); connect(synchPushButton, &QPushButton::clicked, this, &QmitkRenderWindowUtilityWidget::ToggleSynchronization); layout->addWidget(synchPushButton); auto* sliceNavigationController = m_BaseRenderer->GetSliceNavigationController(); m_SliceNavigationWidget = new QmitkSliceNavigationWidget(this); m_StepperAdapter = - new QmitkStepperAdapter(m_SliceNavigationWidget, sliceNavigationController->GetSlice()); + new QmitkStepperAdapter(m_SliceNavigationWidget, sliceNavigationController->GetStepper()); layout->addWidget(m_SliceNavigationWidget); mitk::RenderWindowLayerUtilities::RendererVector controlledRenderer{ m_BaseRenderer }; m_RenderWindowViewDirectionController = std::make_unique(); m_RenderWindowViewDirectionController->SetControlledRenderer(controlledRenderer); m_RenderWindowViewDirectionController->SetDataStorage(dataStorage); m_ViewDirectionSelector = new QComboBox(this); QStringList viewDirections{ "axial", "coronal", "sagittal"}; m_ViewDirectionSelector->insertItems(0, viewDirections); connect(m_ViewDirectionSelector, &QComboBox::currentTextChanged, this, &QmitkRenderWindowUtilityWidget::ChangeViewDirection); UpdateViewPlaneSelection(); layout->addWidget(m_ViewDirectionSelector); // finally add observer, after all relevant objects have been created / initialized sliceNavigationController->ConnectGeometrySendEvent(this); } QmitkRenderWindowUtilityWidget::~QmitkRenderWindowUtilityWidget() { } void QmitkRenderWindowUtilityWidget::ToggleSynchronization(bool synchronized) { m_NodeSelectionWidget->SetSynchronized(synchronized); emit SynchronizationToggled(m_NodeSelectionWidget); } void QmitkRenderWindowUtilityWidget::SetGeometry(const itk::EventObject& event) { if (!mitk::SliceNavigationController::GeometrySendEvent(nullptr, 0).CheckEvent(&event)) { return; } const auto* sliceNavigationController = m_BaseRenderer->GetSliceNavigationController(); auto viewDirection = sliceNavigationController->GetViewDirection(); unsigned int axis = 0; switch (viewDirection) { case mitk::AnatomicalPlane::Original: return; case mitk::AnatomicalPlane::Axial: { axis = 2; break; } case mitk::AnatomicalPlane::Coronal: { axis = 1; break; } case mitk::AnatomicalPlane::Sagittal: { axis = 0; break; } } const auto* inputTimeGeometry = sliceNavigationController->GetInputWorldTimeGeometry(); const mitk::BaseGeometry* rendererGeometry = m_BaseRenderer->GetCurrentWorldGeometry(); - mitk::TimeStepType timeStep = sliceNavigationController->GetTime()->GetPos(); + mitk::TimeStepType timeStep = sliceNavigationController->GetStepper()->GetPos(); mitk::BaseGeometry::ConstPointer geometry = inputTimeGeometry->GetGeometryForTimeStep(timeStep); mitk::AffineTransform3D::MatrixType matrix = geometry->GetIndexToWorldTransform()->GetMatrix(); matrix.GetVnlMatrix().normalize_columns(); mitk::AffineTransform3D::MatrixType::InternalMatrixType inverseMatrix = matrix.GetInverse(); int dominantAxis = itk::Function::Max3(inverseMatrix[0][axis], inverseMatrix[1][axis], inverseMatrix[2][axis]); bool referenceGeometryAxisInverted = inverseMatrix[dominantAxis][axis] < 0; bool rendererZAxisInverted = rendererGeometry->GetAxisVector(2)[axis] < 0; m_SliceNavigationWidget->SetInverseDirection(referenceGeometryAxisInverted != rendererZAxisInverted); } void QmitkRenderWindowUtilityWidget::ChangeViewDirection(const QString& viewDirection) { m_RenderWindowViewDirectionController->SetViewDirectionOfRenderer(viewDirection.toStdString()); } void QmitkRenderWindowUtilityWidget::UpdateViewPlaneSelection() { const auto sliceNavigationController = m_BaseRenderer->GetSliceNavigationController(); const auto viewDirection = sliceNavigationController->GetDefaultViewDirection(); switch (viewDirection) { case mitk::AnatomicalPlane::Axial: m_ViewDirectionSelector->setCurrentIndex(0); break; case mitk::AnatomicalPlane::Coronal: m_ViewDirectionSelector->setCurrentIndex(1); break; case mitk::AnatomicalPlane::Sagittal: m_ViewDirectionSelector->setCurrentIndex(2); break; default: break; } } diff --git a/Modules/QtWidgets/src/QmitkRenderWindowWidget.cpp b/Modules/QtWidgets/src/QmitkRenderWindowWidget.cpp index ae13ec817c..29325720d7 100644 --- a/Modules/QtWidgets/src/QmitkRenderWindowWidget.cpp +++ b/Modules/QtWidgets/src/QmitkRenderWindowWidget.cpp @@ -1,322 +1,322 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkRenderWindowWidget.h" // vtk #include #include QmitkRenderWindowWidget::QmitkRenderWindowWidget(QWidget* parent/* = nullptr*/, const QString& widgetName/* = ""*/, mitk::DataStorage* dataStorage/* = nullptr*/) : QFrame(parent) , m_WidgetName(widgetName) , m_DataStorage(dataStorage) , m_RenderWindow(nullptr) , m_CrosshairManager(nullptr) { this->InitializeGUI(); } QmitkRenderWindowWidget::~QmitkRenderWindowWidget() { auto sliceNavigationController = this->GetSliceNavigationController(); if (nullptr != sliceNavigationController) { sliceNavigationController->SetCrosshairEvent.RemoveListener( mitk::MessageDelegate1( this, &QmitkRenderWindowWidget::SetCrosshairPosition)); } this->DisableCrosshair(); } void QmitkRenderWindowWidget::SetDataStorage(mitk::DataStorage* dataStorage) { if (dataStorage == m_DataStorage) { return; } m_DataStorage = dataStorage; if (nullptr != m_RenderWindow) { mitk::BaseRenderer::GetInstance(m_RenderWindow->renderWindow())->SetDataStorage(dataStorage); } } mitk::SliceNavigationController* QmitkRenderWindowWidget::GetSliceNavigationController() const { return m_RenderWindow->GetSliceNavigationController(); } void QmitkRenderWindowWidget::RequestUpdate() { mitk::RenderingManager::GetInstance()->RequestUpdate(m_RenderWindow->renderWindow()); } void QmitkRenderWindowWidget::ForceImmediateUpdate() { mitk::RenderingManager::GetInstance()->ForceImmediateUpdate(m_RenderWindow->renderWindow()); } void QmitkRenderWindowWidget::AddUtilityWidget(QWidget* utilityWidget) { m_Layout->insertWidget(0, utilityWidget); } void QmitkRenderWindowWidget::SetGradientBackgroundColors(const mitk::Color& upper, const mitk::Color& lower) { vtkRenderer* vtkRenderer = m_RenderWindow->GetRenderer()->GetVtkRenderer(); if (nullptr == vtkRenderer) { return; } m_GradientBackgroundColors.first = upper; m_GradientBackgroundColors.second = lower; vtkRenderer->SetBackground(lower[0], lower[1], lower[2]); vtkRenderer->SetBackground2(upper[0], upper[1], upper[2]); ShowGradientBackground(true); } void QmitkRenderWindowWidget::ShowGradientBackground(bool show) { m_RenderWindow->GetRenderer()->GetVtkRenderer()->SetGradientBackground(show); } bool QmitkRenderWindowWidget::IsGradientBackgroundOn() const { return m_RenderWindow->GetRenderer()->GetVtkRenderer()->GetGradientBackground(); } void QmitkRenderWindowWidget::SetDecorationColor(const mitk::Color& color) { m_DecorationColor = color; m_CornerAnnotation->GetTextProperty()->SetColor(m_DecorationColor[0], m_DecorationColor[1], m_DecorationColor[2]); QColor hexColor(m_DecorationColor[0] * 255, m_DecorationColor[1] * 255, m_DecorationColor[2] * 255); setStyleSheet("QmitkRenderWindowWidget { border: 2px solid " + hexColor.name(QColor::HexRgb) + "; }"); } void QmitkRenderWindowWidget::ShowColoredRectangle(bool show) { if (show) { setFrameStyle(QFrame::Box | QFrame::Plain); } else { setFrameStyle(NoFrame); } } bool QmitkRenderWindowWidget::IsColoredRectangleVisible() const { return frameStyle() > 0; } void QmitkRenderWindowWidget::ShowCornerAnnotation(bool show) { m_CornerAnnotation->SetVisibility(show); } bool QmitkRenderWindowWidget::IsCornerAnnotationVisible() const { return m_CornerAnnotation->GetVisibility() > 0; } void QmitkRenderWindowWidget::SetCornerAnnotationText(const std::string& cornerAnnotation) { m_CornerAnnotation->SetText(0, cornerAnnotation.c_str()); } std::string QmitkRenderWindowWidget::GetCornerAnnotationText() const { return std::string(m_CornerAnnotation->GetText(0)); } bool QmitkRenderWindowWidget::IsRenderWindowMenuActivated() const { return m_RenderWindow->GetActivateMenuWidgetFlag(); } void QmitkRenderWindowWidget::SetCrosshairVisibility(bool visible) { m_CrosshairManager->SetCrosshairVisibility(visible, m_RenderWindow->GetRenderer()); this->RequestUpdate(); } bool QmitkRenderWindowWidget::GetCrosshairVisibility() { return m_CrosshairManager->GetCrosshairVisibility(m_RenderWindow->GetRenderer()); } void QmitkRenderWindowWidget::SetCrosshairGap(unsigned int gapSize) { m_CrosshairManager->SetCrosshairGap(gapSize); } void QmitkRenderWindowWidget::EnableCrosshair() { m_CrosshairManager->AddCrosshairNodeToDataStorage(m_DataStorage); } void QmitkRenderWindowWidget::DisableCrosshair() { m_CrosshairManager->RemoveCrosshairNodeFromDataStorage(m_DataStorage); } void QmitkRenderWindowWidget::InitializeGUI() { m_Layout = new QVBoxLayout(this); m_Layout->setMargin(0); setLayout(m_Layout); setSizePolicy(QSizePolicy::Expanding, QSizePolicy::Expanding); setContentsMargins(0, 0, 0, 0); if (nullptr == m_DataStorage) { return; } mitk::RenderingManager::GetInstance()->SetDataStorage(m_DataStorage); // create render window for this render window widget m_RenderWindow = new QmitkRenderWindow(this, m_WidgetName, nullptr); m_RenderWindow->SetLayoutIndex(mitk::AnatomicalPlane::Sagittal); connect(m_RenderWindow, &QmitkRenderWindow::ResetGeometry, this, &QmitkRenderWindowWidget::OnResetGeometry); auto* sliceNavigationController = this->GetSliceNavigationController(); sliceNavigationController->SetDefaultViewDirection(mitk::AnatomicalPlane::Sagittal); m_Layout->addWidget(m_RenderWindow); // set colors and corner annotation InitializeDecorations(); // use crosshair manager m_CrosshairManager = mitk::CrosshairManager::New(m_RenderWindow->GetRenderer()); sliceNavigationController->SetCrosshairEvent.AddListener( mitk::MessageDelegate1( this, &QmitkRenderWindowWidget::SetCrosshairPosition)); // finally add observer, after all relevant objects have been created / initialized sliceNavigationController->ConnectGeometrySendEvent(this); sliceNavigationController->ConnectGeometrySliceEvent(this); mitk::TimeGeometry::ConstPointer timeGeometry = m_DataStorage->ComputeBoundingGeometry3D(m_DataStorage->GetAll()); mitk::RenderingManager::GetInstance()->InitializeView(m_RenderWindow->GetVtkRenderWindow(), timeGeometry); } void QmitkRenderWindowWidget::InitializeDecorations() { vtkRenderer* vtkRenderer = m_RenderWindow->GetRenderer()->GetVtkRenderer(); if (nullptr == vtkRenderer) { return; } // initialize background color gradients float black[3] = { 0.0f, 0.0f, 0.0f }; SetGradientBackgroundColors(black, black); // initialize annotation text and decoration color setFrameStyle(QFrame::Box | QFrame::Plain); m_CornerAnnotation = vtkSmartPointer::New(); m_CornerAnnotation->SetText(0, "Sagittal"); m_CornerAnnotation->SetMaximumFontSize(12); if (0 == vtkRenderer->HasViewProp(m_CornerAnnotation)) { vtkRenderer->AddViewProp(m_CornerAnnotation); } float white[3] = { 1.0f, 1.0f, 1.0f }; SetDecorationColor(mitk::Color(white)); } void QmitkRenderWindowWidget::SetCrosshairPosition(const mitk::Point3D& newPosition) { m_CrosshairManager->SetCrosshairPosition(newPosition); this->RequestUpdate(); } mitk::Point3D QmitkRenderWindowWidget::GetCrosshairPosition() const { return m_CrosshairManager->GetCrosshairPosition(); } void QmitkRenderWindowWidget::SetGeometry(const itk::EventObject& event) { if (!mitk::SliceNavigationController::GeometrySendEvent(nullptr, 0).CheckEvent(&event)) { return; } const auto* planeGeometry = this->GetSliceNavigationController()->GetCurrentPlaneGeometry(); if (nullptr == planeGeometry) { mitkThrow() << "No valid plane geometry set. Render window is in an invalid state."; } return SetCrosshairPosition(planeGeometry->GetCenter()); } void QmitkRenderWindowWidget::SetGeometrySlice(const itk::EventObject& event) { if (!mitk::SliceNavigationController::GeometrySliceEvent(nullptr, 0).CheckEvent(&event)) { return; } const auto* sliceNavigationController = this->GetSliceNavigationController(); m_CrosshairManager->UpdateCrosshairPosition(sliceNavigationController); } void QmitkRenderWindowWidget::OnResetGeometry() { const auto* baseRenderer = mitk::BaseRenderer::GetInstance(m_RenderWindow->GetVtkRenderWindow()); const auto* interactionReferenceGeometry = baseRenderer->GetInteractionReferenceGeometry(); this->ResetGeometry(interactionReferenceGeometry); m_RenderWindow->ShowOverlayMessage(false); } void QmitkRenderWindowWidget::ResetGeometry(const mitk::TimeGeometry* referenceGeometry) { if (nullptr == referenceGeometry) { return; } mitk::TimeStepType imageTimeStep = 0; // store the current position to set it again later, if the camera should not be reset mitk::Point3D currentPosition = this->GetCrosshairPosition(); // store the current time step to set it again later, if the camera should not be reset auto* renderingManager = mitk::RenderingManager::GetInstance(); - const auto currentTimePoint = renderingManager->GetTimeNavigationController()->GetSelectedTimePoint(); + const mitk::TimePointType currentTimePoint = renderingManager->GetTimeNavigationController()->GetSelectedTimePoint(); if (referenceGeometry->IsValidTimePoint(currentTimePoint)) { imageTimeStep = referenceGeometry->TimePointToTimeStep(currentTimePoint); } const auto* baseRenderer = mitk::BaseRenderer::GetInstance(m_RenderWindow->renderWindow()); renderingManager->InitializeView(baseRenderer->GetRenderWindow(), referenceGeometry, false); // reset position and time step this->GetSliceNavigationController()->SelectSliceByPoint(currentPosition); - renderingManager->GetTimeNavigationController()->GetTime()->SetPos(imageTimeStep); + renderingManager->GetTimeNavigationController()->GetStepper()->SetPos(imageTimeStep); } diff --git a/Modules/QtWidgets/src/QmitkStdMultiWidget.cpp b/Modules/QtWidgets/src/QmitkStdMultiWidget.cpp index 3ad055e200..05efea7479 100644 --- a/Modules/QtWidgets/src/QmitkStdMultiWidget.cpp +++ b/Modules/QtWidgets/src/QmitkStdMultiWidget.cpp @@ -1,742 +1,716 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #define SMW_INFO MITK_INFO("widget.stdmulti") #include "QmitkStdMultiWidget.h" #include "QmitkRenderWindowWidget.h" // mitk core #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include // qt #include #include #include // vtk #include // c++ #include QmitkStdMultiWidget::QmitkStdMultiWidget(QWidget *parent, Qt::WindowFlags f/* = 0*/, const QString &name/* = "stdmulti"*/) : QmitkAbstractMultiWidget(parent, f, name) - , m_TimeNavigationController(nullptr) { - m_TimeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); } QmitkStdMultiWidget::~QmitkStdMultiWidget() { - auto allRenderWindows = this->GetRenderWindows(); - for (auto& renderWindow : allRenderWindows) - { - m_TimeNavigationController->Disconnect(renderWindow->GetSliceNavigationController()); - } } void QmitkStdMultiWidget::InitializeMultiWidget() { // yellow is default color for widget4 m_DecorationColorWidget4[0] = 1.0f; m_DecorationColorWidget4[1] = 1.0f; m_DecorationColorWidget4[2] = 0.0f; SetLayout(2, 2); // transfer colors in WorldGeometry-Nodes of the associated Renderer // of widget 1 m_PlaneNode1 = mitk::BaseRenderer::GetInstance(GetRenderWindow1()->renderWindow())->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode1->SetColor(GetDecorationColor(0)); // of widget 2 m_PlaneNode2 = mitk::BaseRenderer::GetInstance(GetRenderWindow2()->renderWindow())->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode2->SetColor(GetDecorationColor(1)); // of widget 3 m_PlaneNode3 = mitk::BaseRenderer::GetInstance(GetRenderWindow3()->renderWindow())->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode3->SetColor(GetDecorationColor(2)); // the parent node m_ParentNodeForGeometryPlanes = mitk::BaseRenderer::GetInstance(GetRenderWindow4()->renderWindow())->GetCurrentWorldPlaneGeometryNode(); AddDisplayPlaneSubTree(); SetDisplayActionEventHandler(std::make_unique()); auto displayActionEventHandler = GetDisplayActionEventHandler(); if (nullptr != displayActionEventHandler) { displayActionEventHandler->InitActions(); } } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow(const QString& widgetName) const { if ("axial" == widgetName || "Axial" == widgetName) { return GetRenderWindow1(); } if ("sagittal" == widgetName || "Sagittal" == widgetName) { return GetRenderWindow2(); } if ("coronal" == widgetName || "Coronal" == widgetName) { return GetRenderWindow3(); } if ("3d" == widgetName || "3D" == widgetName) { return GetRenderWindow4(); } return QmitkAbstractMultiWidget::GetRenderWindow(widgetName); } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow(const mitk::AnatomicalPlane& orientation) const { return GetRenderWindow(static_cast(orientation)); } void QmitkStdMultiWidget::InitializeViews(const mitk::TimeGeometry* geometry, bool resetCamera) { auto* renderingManager = mitk::RenderingManager::GetInstance(); mitk::Point3D currentPosition = mitk::Point3D(); unsigned int imageTimeStep = 0; if (!resetCamera) { // store the current position to set it again later, if the camera should not be reset currentPosition = this->GetSelectedPosition(""); // store the current time step to set it again later, if the camera should not be reset - const auto currentTimePoint = renderingManager->GetTimeNavigationController()->GetSelectedTimePoint(); + const mitk::TimePointType currentTimePoint = renderingManager->GetTimeNavigationController()->GetSelectedTimePoint(); if (geometry->IsValidTimePoint(currentTimePoint)) { imageTimeStep = geometry->TimePointToTimeStep(currentTimePoint); } } // initialize render windows renderingManager->InitializeViews(geometry, mitk::RenderingManager::REQUEST_UPDATE_ALL, resetCamera); if (!resetCamera) { this->SetSelectedPosition(currentPosition, ""); - renderingManager->GetTimeNavigationController()->GetTime()->SetPos(imageTimeStep); + renderingManager->GetTimeNavigationController()->GetStepper()->SetPos(imageTimeStep); } } void QmitkStdMultiWidget::SetInteractionReferenceGeometry(const mitk::TimeGeometry* /*referenceGeometry*/) { // not implemented on purpose } bool QmitkStdMultiWidget::HasCoupledRenderWindows() const { return true; } void QmitkStdMultiWidget::SetSelectedPosition(const mitk::Point3D& newPosition, const QString& /*widgetName*/) { GetRenderWindow1()->GetSliceNavigationController()->SelectSliceByPoint(newPosition); GetRenderWindow2()->GetSliceNavigationController()->SelectSliceByPoint(newPosition); GetRenderWindow3()->GetSliceNavigationController()->SelectSliceByPoint(newPosition); RequestUpdateAll(); } const mitk::Point3D QmitkStdMultiWidget::GetSelectedPosition(const QString& /*widgetName*/) const { const mitk::PlaneGeometry* plane1 = GetRenderWindow1()->GetSliceNavigationController()->GetCurrentPlaneGeometry(); const mitk::PlaneGeometry* plane2 = GetRenderWindow2()->GetSliceNavigationController()->GetCurrentPlaneGeometry(); const mitk::PlaneGeometry* plane3 = GetRenderWindow3()->GetSliceNavigationController()->GetCurrentPlaneGeometry(); mitk::Line3D line; if ((plane1 != nullptr) && (plane2 != nullptr) && (plane1->IntersectionLine(plane2, line))) { mitk::Point3D point; if ((plane3 != nullptr) && (plane3->IntersectionPoint(line, point))) { return point; } } return mitk::Point3D(); } void QmitkStdMultiWidget::SetCrosshairVisibility(bool visible) { if (m_PlaneNode1.IsNotNull()) { m_PlaneNode1->SetVisibility(visible); } if (m_PlaneNode2.IsNotNull()) { m_PlaneNode2->SetVisibility(visible); } if (m_PlaneNode3.IsNotNull()) { m_PlaneNode3->SetVisibility(visible); } emit NotifyCrosshairVisibilityChanged(visible); RequestUpdateAll(); } bool QmitkStdMultiWidget::GetCrosshairVisibility() const { bool crosshairVisibility = true; if (m_PlaneNode1.IsNotNull()) { bool visibilityProperty = false; m_PlaneNode1->GetVisibility(visibilityProperty, nullptr); crosshairVisibility &= visibilityProperty; } if (m_PlaneNode2.IsNotNull()) { bool visibilityProperty = false; crosshairVisibility &= m_PlaneNode2->GetVisibility(visibilityProperty, nullptr); crosshairVisibility &= visibilityProperty; } if (m_PlaneNode3.IsNotNull()) { bool visibilityProperty = false; crosshairVisibility &= m_PlaneNode3->GetVisibility(visibilityProperty, nullptr); crosshairVisibility &= visibilityProperty; } return crosshairVisibility; } void QmitkStdMultiWidget::SetCrosshairGap(unsigned int gapSize) { m_PlaneNode1->SetIntProperty("Crosshair.Gap Size", gapSize); m_PlaneNode2->SetIntProperty("Crosshair.Gap Size", gapSize); m_PlaneNode3->SetIntProperty("Crosshair.Gap Size", gapSize); } void QmitkStdMultiWidget::ResetCrosshair() { auto dataStorage = GetDataStorage(); if (nullptr == dataStorage) { return; } mitk::RenderingManager::GetInstance()->InitializeViewsByBoundingObjects(dataStorage); SetWidgetPlaneMode(mitk::InteractionSchemeSwitcher::MITKStandard); } void QmitkStdMultiWidget::SetWidgetPlaneMode(int userMode) { MITK_DEBUG << "Changing crosshair mode to " << userMode; switch (userMode) { case 0: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKStandard); break; case 1: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKRotationUncoupled); break; case 2: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKRotationCoupled); break; case 3: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKSwivel); break; } emit NotifyCrosshairRotationModeChanged(userMode); } -mitk::SliceNavigationController* QmitkStdMultiWidget::GetTimeNavigationController() -{ - return m_TimeNavigationController; -} - void QmitkStdMultiWidget::AddPlanesToDataStorage() { auto dataStorage = GetDataStorage(); if (nullptr == dataStorage) { return; } if (m_PlaneNode1.IsNotNull() && m_PlaneNode2.IsNotNull() && m_PlaneNode3.IsNotNull() && m_ParentNodeForGeometryPlanes.IsNotNull()) { dataStorage->Add(m_ParentNodeForGeometryPlanes); dataStorage->Add(m_PlaneNode1, m_ParentNodeForGeometryPlanes); dataStorage->Add(m_PlaneNode2, m_ParentNodeForGeometryPlanes); dataStorage->Add(m_PlaneNode3, m_ParentNodeForGeometryPlanes); } } void QmitkStdMultiWidget::RemovePlanesFromDataStorage() { auto dataStorage = GetDataStorage(); if (nullptr == dataStorage) { return; } if (m_PlaneNode1.IsNotNull() && m_PlaneNode2.IsNotNull() && m_PlaneNode3.IsNotNull() && m_ParentNodeForGeometryPlanes.IsNotNull()) { dataStorage->Remove(m_PlaneNode1); dataStorage->Remove(m_PlaneNode2); dataStorage->Remove(m_PlaneNode3); dataStorage->Remove(m_ParentNodeForGeometryPlanes); } } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow(unsigned int number) const { switch (number) { case 0: return GetRenderWindow1(); case 1: return GetRenderWindow2(); case 2: return GetRenderWindow3(); case 3: return GetRenderWindow4(); default: MITK_ERROR << "Requested unknown render window"; break; } return nullptr; } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow1() const { return QmitkAbstractMultiWidget::GetRenderWindow(GetNameFromIndex(0, 0)); } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow2() const { return QmitkAbstractMultiWidget::GetRenderWindow(GetNameFromIndex(0, 1)); } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow3() const { return QmitkAbstractMultiWidget::GetRenderWindow(GetNameFromIndex(1, 0)); } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow4() const { return QmitkAbstractMultiWidget::GetRenderWindow(GetNameFromIndex(1, 1)); } mitk::DataNode::Pointer QmitkStdMultiWidget::GetWidgetPlane1() const { return m_PlaneNode1; } mitk::DataNode::Pointer QmitkStdMultiWidget::GetWidgetPlane2() const { return m_PlaneNode2; } mitk::DataNode::Pointer QmitkStdMultiWidget::GetWidgetPlane3() const { return m_PlaneNode3; } mitk::DataNode::Pointer QmitkStdMultiWidget::GetWidgetPlane(unsigned number) const { switch (number) { case 1: return m_PlaneNode1; case 2: return m_PlaneNode2; case 3: return m_PlaneNode3; default: MITK_ERROR << "Requested unknown render window"; break; } return nullptr; } void QmitkStdMultiWidget::SetDecorationColor(unsigned int widgetNumber, mitk::Color color) { switch (widgetNumber) { case 0: if (m_PlaneNode1.IsNotNull()) { m_PlaneNode1->SetColor(color); } break; case 1: if (m_PlaneNode2.IsNotNull()) { m_PlaneNode2->SetColor(color); } break; case 2: if (m_PlaneNode3.IsNotNull()) { m_PlaneNode3->SetColor(color); } break; case 3: m_DecorationColorWidget4 = color; break; default: MITK_ERROR << "Decoration color for unknown widget!"; break; } } mitk::Color QmitkStdMultiWidget::GetDecorationColor(unsigned int widgetNumber) { // The implementation looks a bit messy here, but it avoids // synchronization of the color of the geometry nodes and an // internal member here. // Default colors were chosen for decent visibility. // Feel free to change your preferences in the workbench. float tmp[3] = { 0.0f, 0.0f, 0.0f }; switch (widgetNumber) { case 0: { if (m_PlaneNode1.IsNotNull()) { if (m_PlaneNode1->GetColor(tmp)) { return dynamic_cast(m_PlaneNode1->GetProperty("color"))->GetColor(); } } float red[3] = { 0.753f, 0.0f, 0.0f }; // This is #C00000 in hex return mitk::Color(red); } case 1: { if (m_PlaneNode2.IsNotNull()) { if (m_PlaneNode2->GetColor(tmp)) { return dynamic_cast(m_PlaneNode2->GetProperty("color"))->GetColor(); } } float green[3] = { 0.0f, 0.69f, 0.0f }; // This is #00B000 in hex return mitk::Color(green); } case 2: { if (m_PlaneNode3.IsNotNull()) { if (m_PlaneNode3->GetColor(tmp)) { return dynamic_cast(m_PlaneNode3->GetProperty("color"))->GetColor(); } } float blue[3] = { 0.0, 0.502f, 1.0f }; // This is #0080FF in hex return mitk::Color(blue); } case 3: { return m_DecorationColorWidget4; } default: MITK_ERROR << "Decoration color for unknown widget!"; float black[3] = { 0.0f, 0.0f, 0.0f }; return mitk::Color(black); } } void QmitkStdMultiWidget::mousePressEvent(QMouseEvent*) { // nothing here, but necessary for mouse interactions (.xml-configuration files) } void QmitkStdMultiWidget::moveEvent(QMoveEvent* e) { QWidget::moveEvent(e); // it is necessary to readjust the position of the Annotation as the StdMultiWidget has moved // unfortunately it's not done by QmitkRenderWindow::moveEvent -> must be done here emit Moved(); } void QmitkStdMultiWidget::wheelEvent(QWheelEvent* e) { emit WheelMoved(e); } void QmitkStdMultiWidget::Fit() { vtkSmartPointer vtkrenderer; vtkrenderer = mitk::BaseRenderer::GetInstance(GetRenderWindow1()->renderWindow())->GetVtkRenderer(); if (nullptr != vtkrenderer) { vtkrenderer->ResetCamera(); } vtkrenderer = mitk::BaseRenderer::GetInstance(GetRenderWindow2()->renderWindow())->GetVtkRenderer(); if (nullptr != vtkrenderer) { vtkrenderer->ResetCamera(); } vtkrenderer = mitk::BaseRenderer::GetInstance(GetRenderWindow3()->renderWindow())->GetVtkRenderer(); if (nullptr != vtkrenderer) { vtkrenderer->ResetCamera(); } vtkrenderer = mitk::BaseRenderer::GetInstance(GetRenderWindow4()->renderWindow())->GetVtkRenderer(); if (nullptr != vtkrenderer) { vtkrenderer->ResetCamera(); } mitk::BaseRenderer::GetInstance(GetRenderWindow1()->renderWindow())->GetCameraController()->Fit(); mitk::BaseRenderer::GetInstance(GetRenderWindow2()->renderWindow())->GetCameraController()->Fit(); mitk::BaseRenderer::GetInstance(GetRenderWindow3()->renderWindow())->GetCameraController()->Fit(); mitk::BaseRenderer::GetInstance(GetRenderWindow4()->renderWindow())->GetCameraController()->Fit(); int w = vtkObject::GetGlobalWarningDisplay(); vtkObject::GlobalWarningDisplayOff(); vtkObject::SetGlobalWarningDisplay(w); } void QmitkStdMultiWidget::AddDisplayPlaneSubTree() { // add the displayed planes of the multiwidget to a node to which the subtree // @a planesSubTree points ... mitk::PlaneGeometryDataMapper2D::Pointer mapper; // ... of widget 1 mitk::BaseRenderer* renderer1 = mitk::BaseRenderer::GetInstance(GetRenderWindow1()->renderWindow()); m_PlaneNode1 = renderer1->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode1->SetProperty("visible", mitk::BoolProperty::New(true)); m_PlaneNode1->SetProperty("name", mitk::StringProperty::New(std::string(renderer1->GetName()) + ".plane")); m_PlaneNode1->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_PlaneNode1->SetProperty("helper object", mitk::BoolProperty::New(true)); mapper = mitk::PlaneGeometryDataMapper2D::New(); m_PlaneNode1->SetMapper(mitk::BaseRenderer::Standard2D, mapper); // ... of widget 2 mitk::BaseRenderer* renderer2 = mitk::BaseRenderer::GetInstance(GetRenderWindow2()->renderWindow()); m_PlaneNode2 = renderer2->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode2->SetProperty("visible", mitk::BoolProperty::New(true)); m_PlaneNode2->SetProperty("name", mitk::StringProperty::New(std::string(renderer2->GetName()) + ".plane")); m_PlaneNode2->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_PlaneNode2->SetProperty("helper object", mitk::BoolProperty::New(true)); mapper = mitk::PlaneGeometryDataMapper2D::New(); m_PlaneNode2->SetMapper(mitk::BaseRenderer::Standard2D, mapper); // ... of widget 3 mitk::BaseRenderer *renderer3 = mitk::BaseRenderer::GetInstance(GetRenderWindow3()->renderWindow()); m_PlaneNode3 = renderer3->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode3->SetProperty("visible", mitk::BoolProperty::New(true)); m_PlaneNode3->SetProperty("name", mitk::StringProperty::New(std::string(renderer3->GetName()) + ".plane")); m_PlaneNode3->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_PlaneNode3->SetProperty("helper object", mitk::BoolProperty::New(true)); mapper = mitk::PlaneGeometryDataMapper2D::New(); m_PlaneNode3->SetMapper(mitk::BaseRenderer::Standard2D, mapper); m_ParentNodeForGeometryPlanes = mitk::DataNode::New(); m_ParentNodeForGeometryPlanes->SetProperty("name", mitk::StringProperty::New("Widgets")); m_ParentNodeForGeometryPlanes->SetProperty("helper object", mitk::BoolProperty::New(true)); } void QmitkStdMultiWidget::EnsureDisplayContainsPoint(mitk::BaseRenderer *renderer, const mitk::Point3D &p) { mitk::Point2D pointOnDisplay; renderer->WorldToDisplay(p, pointOnDisplay); if (pointOnDisplay[0] < renderer->GetVtkRenderer()->GetOrigin()[0] || pointOnDisplay[1] < renderer->GetVtkRenderer()->GetOrigin()[1] || pointOnDisplay[0] > renderer->GetVtkRenderer()->GetOrigin()[0] + renderer->GetViewportSize()[0] || pointOnDisplay[1] > renderer->GetVtkRenderer()->GetOrigin()[1] + renderer->GetViewportSize()[1]) { mitk::Point2D pointOnPlane; renderer->GetCurrentWorldPlaneGeometry()->Map(p, pointOnPlane); renderer->GetCameraController()->MoveCameraToPoint(pointOnPlane); } } void QmitkStdMultiWidget::SetWidgetPlaneVisibility(const char *widgetName, bool visible, mitk::BaseRenderer *renderer) { auto dataStorage = GetDataStorage(); if (nullptr != dataStorage) { mitk::DataNode* dataNode = dataStorage->GetNamedNode(widgetName); if (dataNode != nullptr) { dataNode->SetVisibility(visible, renderer); } } } void QmitkStdMultiWidget::SetWidgetPlanesVisibility(bool visible, mitk::BaseRenderer *renderer) { if (m_PlaneNode1.IsNotNull()) { m_PlaneNode1->SetVisibility(visible, renderer); } if (m_PlaneNode2.IsNotNull()) { m_PlaneNode2->SetVisibility(visible, renderer); } if (m_PlaneNode3.IsNotNull()) { m_PlaneNode3->SetVisibility(visible, renderer); } mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } ////////////////////////////////////////////////////////////////////////// // PRIVATE ////////////////////////////////////////////////////////////////////////// void QmitkStdMultiWidget::SetLayoutImpl() { CreateRenderWindowWidgets(); GetMultiWidgetLayoutManager()->SetLayoutDesign(QmitkMultiWidgetLayoutManager::LayoutDesign::DEFAULT); // Initialize views as axial, sagittal, coronal to all data objects in DataStorage auto geo = GetDataStorage()->ComputeBoundingGeometry3D(GetDataStorage()->GetAll()); mitk::RenderingManager::GetInstance()->InitializeViews(geo); } void QmitkStdMultiWidget::CreateRenderWindowWidgets() { // create axial render window (widget) QString renderWindowWidgetName = GetNameFromIndex(0, 0); RenderWindowWidgetPointer renderWindowWidget1 = std::make_shared(this, renderWindowWidgetName, GetDataStorage()); auto renderWindow1 = renderWindowWidget1->GetRenderWindow(); renderWindow1->GetSliceNavigationController()->SetDefaultViewDirection(mitk::AnatomicalPlane::Axial); renderWindowWidget1->SetDecorationColor(GetDecorationColor(0)); renderWindowWidget1->SetCornerAnnotationText("Axial"); renderWindowWidget1->GetRenderWindow()->SetLayoutIndex(mitk::AnatomicalPlane::Axial); AddRenderWindowWidget(renderWindowWidgetName, renderWindowWidget1); // create sagittal render window (widget) renderWindowWidgetName = GetNameFromIndex(0, 1); RenderWindowWidgetPointer renderWindowWidget2 = std::make_shared(this, renderWindowWidgetName, GetDataStorage()); auto renderWindow2 = renderWindowWidget2->GetRenderWindow(); renderWindow2->GetSliceNavigationController()->SetDefaultViewDirection(mitk::AnatomicalPlane::Sagittal); renderWindowWidget2->SetDecorationColor(GetDecorationColor(1)); renderWindowWidget2->setStyleSheet("border: 0px"); renderWindowWidget2->SetCornerAnnotationText("Sagittal"); renderWindowWidget2->GetRenderWindow()->SetLayoutIndex(mitk::AnatomicalPlane::Sagittal); AddRenderWindowWidget(renderWindowWidgetName, renderWindowWidget2); // create coronal render window (widget) renderWindowWidgetName = GetNameFromIndex(1, 0); RenderWindowWidgetPointer renderWindowWidget3 = std::make_shared(this, renderWindowWidgetName, GetDataStorage()); auto renderWindow3 = renderWindowWidget3->GetRenderWindow(); renderWindow3->GetSliceNavigationController()->SetDefaultViewDirection(mitk::AnatomicalPlane::Coronal); renderWindowWidget3->SetDecorationColor(GetDecorationColor(2)); renderWindowWidget3->SetCornerAnnotationText("Coronal"); renderWindowWidget3->GetRenderWindow()->SetLayoutIndex(mitk::AnatomicalPlane::Coronal); AddRenderWindowWidget(renderWindowWidgetName, renderWindowWidget3); // create 3D render window (widget) renderWindowWidgetName = GetNameFromIndex(1, 1); RenderWindowWidgetPointer renderWindowWidget4 = std::make_shared(this, renderWindowWidgetName, GetDataStorage()); auto renderWindow4 = renderWindowWidget4->GetRenderWindow(); renderWindow4->GetSliceNavigationController()->SetDefaultViewDirection(mitk::AnatomicalPlane::Original); renderWindowWidget4->SetDecorationColor(GetDecorationColor(3)); renderWindowWidget4->SetCornerAnnotationText("3D"); renderWindowWidget4->GetRenderWindow()->SetLayoutIndex(mitk::AnatomicalPlane::Original); mitk::BaseRenderer::GetInstance(renderWindowWidget4->GetRenderWindow()->renderWindow())->SetMapperID(mitk::BaseRenderer::Standard3D); AddRenderWindowWidget(renderWindowWidgetName, renderWindowWidget4); SetActiveRenderWindowWidget(renderWindowWidget1); - // connect to the "time navigation controller": send time via sliceNavigationControllers - m_TimeNavigationController->ConnectGeometryTimeEvent(renderWindow1->GetSliceNavigationController()); - m_TimeNavigationController->ConnectGeometryTimeEvent(renderWindow2->GetSliceNavigationController()); - m_TimeNavigationController->ConnectGeometryTimeEvent(renderWindow3->GetSliceNavigationController()); - m_TimeNavigationController->ConnectGeometryTimeEvent(renderWindow4->GetSliceNavigationController()); - renderWindow1->GetSliceNavigationController()->ConnectGeometrySendEvent( - mitk::BaseRenderer::GetInstance(renderWindow4->renderWindow())); - - // reverse connection between sliceNavigationControllers and timeNavigationController - renderWindow1->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); - renderWindow2->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); - renderWindow3->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); - //renderWindow4->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); - auto layoutManager = GetMultiWidgetLayoutManager(); connect(renderWindow1, &QmitkRenderWindow::ResetView, this, &QmitkStdMultiWidget::ResetCrosshair); connect(renderWindow1, &QmitkRenderWindow::CrosshairVisibilityChanged, this, &QmitkStdMultiWidget::SetCrosshairVisibility); connect(renderWindow1, &QmitkRenderWindow::CrosshairRotationModeChanged, this, &QmitkStdMultiWidget::SetWidgetPlaneMode); connect(renderWindow1, &QmitkRenderWindow::LayoutDesignChanged, layoutManager, &QmitkMultiWidgetLayoutManager::SetLayoutDesign); connect(this, &QmitkStdMultiWidget::NotifyCrosshairVisibilityChanged, renderWindow1, &QmitkRenderWindow::UpdateCrosshairVisibility); connect(this, &QmitkStdMultiWidget::NotifyCrosshairRotationModeChanged, renderWindow1, &QmitkRenderWindow::UpdateCrosshairRotationMode); connect(renderWindow2, &QmitkRenderWindow::ResetView, this, &QmitkStdMultiWidget::ResetCrosshair); connect(renderWindow2, &QmitkRenderWindow::CrosshairVisibilityChanged, this, &QmitkStdMultiWidget::SetCrosshairVisibility); connect(renderWindow2, &QmitkRenderWindow::CrosshairRotationModeChanged, this, &QmitkStdMultiWidget::SetWidgetPlaneMode); connect(renderWindow2, &QmitkRenderWindow::LayoutDesignChanged, layoutManager, &QmitkMultiWidgetLayoutManager::SetLayoutDesign); connect(this, &QmitkStdMultiWidget::NotifyCrosshairVisibilityChanged, renderWindow2, &QmitkRenderWindow::UpdateCrosshairVisibility); connect(this, &QmitkStdMultiWidget::NotifyCrosshairRotationModeChanged, renderWindow2, &QmitkRenderWindow::UpdateCrosshairRotationMode); connect(renderWindow3, &QmitkRenderWindow::ResetView, this, &QmitkStdMultiWidget::ResetCrosshair); connect(renderWindow3, &QmitkRenderWindow::CrosshairVisibilityChanged, this, &QmitkStdMultiWidget::SetCrosshairVisibility); connect(renderWindow3, &QmitkRenderWindow::CrosshairRotationModeChanged, this, &QmitkStdMultiWidget::SetWidgetPlaneMode); connect(renderWindow3, &QmitkRenderWindow::LayoutDesignChanged, layoutManager, &QmitkMultiWidgetLayoutManager::SetLayoutDesign); connect(this, &QmitkStdMultiWidget::NotifyCrosshairVisibilityChanged, renderWindow3, &QmitkRenderWindow::UpdateCrosshairVisibility); connect(this, &QmitkStdMultiWidget::NotifyCrosshairRotationModeChanged, renderWindow3, &QmitkRenderWindow::UpdateCrosshairRotationMode); connect(renderWindow4, &QmitkRenderWindow::ResetView, this, &QmitkStdMultiWidget::ResetCrosshair); connect(renderWindow4, &QmitkRenderWindow::CrosshairVisibilityChanged, this, &QmitkStdMultiWidget::SetCrosshairVisibility); connect(renderWindow4, &QmitkRenderWindow::CrosshairRotationModeChanged, this, &QmitkStdMultiWidget::SetWidgetPlaneMode); connect(renderWindow4, &QmitkRenderWindow::LayoutDesignChanged, layoutManager, &QmitkMultiWidgetLayoutManager::SetLayoutDesign); connect(this, &QmitkStdMultiWidget::NotifyCrosshairVisibilityChanged, renderWindow4, &QmitkRenderWindow::UpdateCrosshairVisibility); connect(this, &QmitkStdMultiWidget::NotifyCrosshairRotationModeChanged, renderWindow4, &QmitkRenderWindow::UpdateCrosshairRotationMode); } diff --git a/Modules/QtWidgetsExt/src/QmitkSliceWidget.cpp b/Modules/QtWidgetsExt/src/QmitkSliceWidget.cpp index 3a8462c70b..7cfbb790eb 100644 --- a/Modules/QtWidgetsExt/src/QmitkSliceWidget.cpp +++ b/Modules/QtWidgetsExt/src/QmitkSliceWidget.cpp @@ -1,266 +1,266 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkSliceWidget.h" #include "QmitkStepperAdapter.h" #include "mitkCameraController.h" #include "mitkImage.h" #include "mitkNodePredicateDataType.h" #include #include #include #include QmitkSliceWidget::QmitkSliceWidget(QWidget *parent, const char *name, Qt::WindowFlags f) : QWidget(parent, f) { this->setupUi(this); if (name != nullptr) this->setObjectName(name); popUp = new QMenu(this); popUp->addAction("Axial"); popUp->addAction("Coronal"); popUp->addAction("Sagittal"); QObject::connect(popUp, SIGNAL(triggered(QAction *)), this, SLOT(ChangeView(QAction *))); setPopUpEnabled(false); m_SlicedGeometry = nullptr; m_View = mitk::AnatomicalPlane::Axial; QHBoxLayout *hlayout = new QHBoxLayout(container); hlayout->setMargin(0); // create widget QString composedName("QmitkSliceWidget::"); if (!this->objectName().isEmpty()) composedName += this->objectName(); else composedName += "QmitkGLWidget"; m_RenderWindow = new QmitkRenderWindow(container, composedName); m_Renderer = m_RenderWindow->GetRenderer(); hlayout->addWidget(m_RenderWindow); - new QmitkStepperAdapter(sliceNavigationWidget, m_RenderWindow->GetSliceNavigationController()->GetSlice()); + new QmitkStepperAdapter(sliceNavigationWidget, m_RenderWindow->GetSliceNavigationController()->GetStepper()); SetLevelWindowEnabled(true); } mitk::VtkPropRenderer *QmitkSliceWidget::GetRenderer() { return m_Renderer; } QFrame *QmitkSliceWidget::GetSelectionFrame() { return SelectionFrame; } void QmitkSliceWidget::SetDataStorage(mitk::StandaloneDataStorage::Pointer storage) { m_DataStorage = storage; m_Renderer->SetDataStorage(m_DataStorage); } mitk::StandaloneDataStorage *QmitkSliceWidget::GetDataStorage() { return m_DataStorage; } void QmitkSliceWidget::SetData(mitk::DataStorage::SetOfObjects::ConstIterator it) { SetData(it->Value(), m_View); } void QmitkSliceWidget::SetData(mitk::DataStorage::SetOfObjects::ConstIterator it, mitk::AnatomicalPlane view) { SetData(it->Value(), view); } void QmitkSliceWidget::SetData(mitk::DataNode::Pointer node) { try { if (m_DataStorage.IsNotNull()) { m_DataStorage->Add(node); } } catch (...) { } SetData(node, m_View); } void QmitkSliceWidget::SetData(mitk::DataNode::Pointer node, mitk::AnatomicalPlane view) { mitk::Image::Pointer image = dynamic_cast(node->GetData()); if (image.IsNull()) { MITK_WARN << "QmitkSliceWidget data is not an image!"; return; } m_SlicedGeometry = image->GetSlicedGeometry(); this->InitWidget(view); } void QmitkSliceWidget::InitWidget(mitk::AnatomicalPlane view) { m_View = view; mitk::SliceNavigationController *controller = m_RenderWindow->GetSliceNavigationController(); if (view == mitk::AnatomicalPlane::Axial) { controller->SetViewDirection(mitk::AnatomicalPlane::Axial); } else if (view == mitk::AnatomicalPlane::Coronal) { controller->SetViewDirection(mitk::AnatomicalPlane::Coronal); } // init sagittal view for all other cases ('original' is covered here as well) else { controller->SetViewDirection(mitk::AnatomicalPlane::Sagittal); } if (m_SlicedGeometry.IsNull()) { return; } mitk::BaseGeometry::Pointer geometry = static_cast(m_SlicedGeometry->Clone().GetPointer()); const mitk::BoundingBox::Pointer boundingbox = m_DataStorage->ComputeVisibleBoundingBox(GetRenderer(), nullptr); if (boundingbox->GetPoints()->Size() > 0) { // let's see if we have data with a limited live-span ... mitk::TimeBounds timebounds = m_DataStorage->ComputeTimeBounds(GetRenderer(), nullptr); mitk::ProportionalTimeGeometry::Pointer timeGeometry = mitk::ProportionalTimeGeometry::New(); timeGeometry->Initialize(geometry, 1); { timeGeometry->SetFirstTimePoint(timebounds[0]); timeGeometry->SetStepDuration(1.0); } if (timeGeometry->GetBoundingBoxInWorld()->GetDiagonalLength2() >= mitk::eps) { controller->SetInputWorldTimeGeometry(timeGeometry); controller->Update(); } } GetRenderer()->GetCameraController()->Fit(); mitk::RenderingManager::GetInstance()->RequestUpdate(GetRenderer()->GetRenderWindow()); } void QmitkSliceWidget::UpdateGL() { GetRenderer()->GetCameraController()->Fit(); mitk::RenderingManager::GetInstance()->RequestUpdate(GetRenderer()->GetRenderWindow()); } void QmitkSliceWidget::mousePressEvent(QMouseEvent *e) { if (e->button() == Qt::RightButton && popUpEnabled) { popUp->popup(QCursor::pos()); } } void QmitkSliceWidget::wheelEvent(QWheelEvent *e) { int val = sliceNavigationWidget->GetPos(); if (e->orientation() * e->delta() > 0) { sliceNavigationWidget->SetPos(val + 1); } else { if (val > 0) sliceNavigationWidget->SetPos(val - 1); } } void QmitkSliceWidget::ChangeView(QAction *val) { if (val->text() == "Axial") { InitWidget(mitk::AnatomicalPlane::Axial); } else if (val->text() == "Coronal") { InitWidget(mitk::AnatomicalPlane::Coronal); } else if (val->text() == "Sagittal") { InitWidget(mitk::AnatomicalPlane::Sagittal); } } void QmitkSliceWidget::setPopUpEnabled(bool b) { popUpEnabled = b; } QmitkSliceNavigationWidget* QmitkSliceWidget::GetSliceNavigationWidget() { return sliceNavigationWidget; } void QmitkSliceWidget::SetLevelWindowEnabled(bool enable) { levelWindow->setEnabled(enable); if (!enable) { levelWindow->setMinimumWidth(0); levelWindow->setMaximumWidth(0); } else { levelWindow->setMinimumWidth(28); levelWindow->setMaximumWidth(28); } } bool QmitkSliceWidget::IsLevelWindowEnabled() { return levelWindow->isEnabled(); } QmitkRenderWindow *QmitkSliceWidget::GetRenderWindow() { return m_RenderWindow; } mitk::SliceNavigationController *QmitkSliceWidget::GetSliceNavigationController() const { return m_RenderWindow->GetSliceNavigationController(); } mitk::CameraRotationController *QmitkSliceWidget::GetCameraRotationController() const { return m_RenderWindow->GetCameraRotationController(); } mitk::BaseController *QmitkSliceWidget::GetController() const { return m_RenderWindow->GetController(); } diff --git a/Modules/Segmentation/Algorithms/mitkSegmentationHelper.cpp b/Modules/Segmentation/Algorithms/mitkSegmentationHelper.cpp index c65ac2c200..8dac9a7fff 100644 --- a/Modules/Segmentation/Algorithms/mitkSegmentationHelper.cpp +++ b/Modules/Segmentation/Algorithms/mitkSegmentationHelper.cpp @@ -1,45 +1,45 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkSegmentationHelper.h" #include #include -#include +#include mitk::Image::Pointer mitk::SegmentationHelper::GetStaticSegmentationTemplate(const Image* referenceImage) { if (referenceImage == nullptr) return nullptr; const auto* referenceGeometry = referenceImage->GetTimeGeometry(); const auto timePoint = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); const auto timeStep = referenceGeometry->IsValidTimePoint(timePoint) ? referenceGeometry->TimePointToTimeStep(timePoint) : 0; auto geometry = ProportionalTimeGeometry::New(); geometry->SetFirstTimePoint(referenceGeometry->GetMinimumTimePoint()); geometry->SetStepDuration(referenceGeometry->GetMaximumTimePoint() - referenceGeometry->GetMinimumTimePoint()); geometry->SetTimeStepGeometry(referenceImage->GetGeometry(timeStep), 0); auto selector = mitk::ImageTimeSelector::New(); selector->SetInput(referenceImage); selector->SetTimeNr(timeStep); selector->Update(); Image::Pointer templateImage = selector->GetOutput(); templateImage->SetTimeGeometry(geometry); return templateImage; } diff --git a/Modules/Segmentation/Controllers/mitkToolManager.cpp b/Modules/Segmentation/Controllers/mitkToolManager.cpp index bf4b30c3bf..d1fab073f6 100644 --- a/Modules/Segmentation/Controllers/mitkToolManager.cpp +++ b/Modules/Segmentation/Controllers/mitkToolManager.cpp @@ -1,596 +1,592 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkToolManager.h" #include "mitkToolManagerProvider.h" #include "mitkCoreObjectFactory.h" #include #include #include #include "mitkInteractionEventObserver.h" #include "mitkSegTool2D.h" #include "mitkRenderingManager.h" -#include "mitkSliceNavigationController.h" +#include "mitkTimeNavigationController.h" #include "usGetModuleContext.h" #include "usModuleContext.h" mitk::ToolManager::ToolManager(DataStorage *storage) : m_ActiveTool(nullptr), m_ActiveToolID(-1), m_RegisteredClients(0), m_DataStorage(storage) { CoreObjectFactory::GetInstance(); // to make sure a CoreObjectFactory was instantiated (and in turn, possible tools // are registered) - bug 1029 this->InitializeTools(); } void mitk::ToolManager::EnsureTimeObservation() { - if (nullptr != mitk::RenderingManager::GetInstance() && nullptr != mitk::RenderingManager::GetInstance()->GetTimeNavigationController()) - { - auto timeController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); - - m_LastTimePoint = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); + auto* timeController = RenderingManager::GetInstance()->GetTimeNavigationController(); + m_LastTimePoint = timeController->GetSelectedTimePoint(); - auto currentTimeController = m_CurrentTimeNavigationController.Lock(); + auto currentTimeController = m_CurrentTimeNavigationController.Lock(); - if (timeController != currentTimeController) + if (timeController != currentTimeController) + { + if (currentTimeController.IsNotNull()) { - if (currentTimeController.IsNotNull()) - { - currentTimeController->RemoveObserver(m_TimePointObserverTag); - } - - itk::MemberCommand::Pointer command = itk::MemberCommand::New(); - command->SetCallbackFunction(this, &ToolManager::OnTimeChanged); - command->SetCallbackFunction(this, &ToolManager::OnTimeChangedConst); - m_CurrentTimeNavigationController = timeController; - m_TimePointObserverTag = timeController->AddObserver(SliceNavigationController::GeometryTimeEvent(nullptr,0), command); + currentTimeController->RemoveObserver(m_TimePointObserverTag); } + + itk::MemberCommand::Pointer command = itk::MemberCommand::New(); + command->SetCallbackFunction(this, &ToolManager::OnTimeChanged); + command->SetCallbackFunction(this, &ToolManager::OnTimeChangedConst); + m_CurrentTimeNavigationController = timeController; + m_TimePointObserverTag = timeController->AddObserver(TimeNavigationController::TimeEvent(0), command); } } void mitk::ToolManager::StopTimeObservation() { auto currentTimeController = m_CurrentTimeNavigationController.Lock(); if (currentTimeController.IsNotNull()) { currentTimeController->RemoveObserver(m_TimePointObserverTag); m_CurrentTimeNavigationController = nullptr; m_TimePointObserverTag = 0; } } mitk::ToolManager::~ToolManager() { for (auto dataIter = m_WorkingData.begin(); dataIter != m_WorkingData.end(); ++dataIter) (*dataIter)->RemoveObserver(m_WorkingDataObserverTags[(*dataIter)]); if (this->GetDataStorage() != nullptr) this->GetDataStorage()->RemoveNodeEvent.RemoveListener( mitk::MessageDelegate1(this, &ToolManager::OnNodeRemoved)); if (m_ActiveTool) { m_ActiveTool->Deactivated(); m_ActiveToolRegistration.Unregister(); m_ActiveTool = nullptr; m_ActiveToolID = -1; // no tool active ActiveToolChanged.Send(); } for (auto observerTagMapIter = m_ReferenceDataObserverTags.begin(); observerTagMapIter != m_ReferenceDataObserverTags.end(); ++observerTagMapIter) { observerTagMapIter->first->RemoveObserver(observerTagMapIter->second); } this->StopTimeObservation(); } void mitk::ToolManager::InitializeTools() { // clear all previous tool pointers (tools may be still activated from another recently used plugin) if (m_ActiveTool) { m_ActiveTool->Deactivated(); m_ActiveToolRegistration.Unregister(); m_ActiveTool = nullptr; m_ActiveToolID = -1; // no tool active ActiveToolChanged.Send(); } m_Tools.clear(); // get a list of all known mitk::Tools std::list thingsThatClaimToBeATool = itk::ObjectFactoryBase::CreateAllInstance("mitkTool"); // remember these tools for (auto iter = thingsThatClaimToBeATool.begin(); iter != thingsThatClaimToBeATool.end(); ++iter) { if (auto *tool = dynamic_cast(iter->GetPointer())) { tool->InitializeStateMachine(); tool->SetToolManager(this); // important to call right after instantiation tool->ErrorMessage += MessageDelegate1(this, &ToolManager::OnToolErrorMessage); tool->GeneralMessage += MessageDelegate1(this, &ToolManager::OnGeneralToolMessage); m_Tools.push_back(tool); } } } void mitk::ToolManager::OnToolErrorMessage(std::string s) { this->ToolErrorMessage(s); } void mitk::ToolManager::OnGeneralToolMessage(std::string s) { this->GeneralToolMessage(s); } const mitk::ToolManager::ToolVectorTypeConst mitk::ToolManager::GetTools() { ToolVectorTypeConst resultList; for (auto iter = m_Tools.begin(); iter != m_Tools.end(); ++iter) { resultList.push_back(iter->GetPointer()); } return resultList; } mitk::Tool *mitk::ToolManager::GetToolById(int id) { try { return m_Tools.at(id); } catch (const std::exception &) { return nullptr; } } bool mitk::ToolManager::ActivateTool(int id) { const auto workingDataNode = this->GetWorkingData(0); const mitk::BaseData* workingData = nullptr; if (nullptr != workingDataNode) { workingData = workingDataNode->GetData(); } const auto referenceDataNode = this->GetReferenceData(0); const mitk::BaseData* referenceData = nullptr; if (nullptr != referenceDataNode) { referenceData = referenceDataNode->GetData(); } if (id != -1 && !this->GetToolById(id)->CanHandle(referenceData, workingData)) return false; if (this->GetDataStorage()) { this->GetDataStorage()->RemoveNodeEvent.AddListener( mitk::MessageDelegate1(this, &ToolManager::OnNodeRemoved)); } if (GetToolById(id) == m_ActiveTool) return true; // no change needed static int nextTool = -1; nextTool = id; static bool inActivateTool = false; if (inActivateTool) { return true; } inActivateTool = true; while (nextTool != m_ActiveToolID) { // Deactivate all other active tools to ensure a globally single active tool for (const auto& toolManager : ToolManagerProvider::GetInstance()->GetToolManagers()) { if (nullptr != toolManager.second->m_ActiveTool) { toolManager.second->m_ActiveTool->Deactivated(); toolManager.second->m_ActiveToolRegistration.Unregister(); // The active tool of *this* ToolManager is handled below this loop if (this != toolManager.second) { toolManager.second->m_ActiveTool = nullptr; toolManager.second->m_ActiveToolID = -1; toolManager.second->ActiveToolChanged.Send(); } } } m_ActiveTool = GetToolById(nextTool); m_ActiveToolID = m_ActiveTool ? nextTool : -1; // current ID if tool is valid, otherwise -1 ActiveToolChanged.Send(); if (m_ActiveTool) { this->EnsureTimeObservation(); if (m_RegisteredClients > 0) { m_ActiveTool->Activated(); m_ActiveToolRegistration = us::GetModuleContext()->RegisterService(m_ActiveTool, us::ServiceProperties()); } } } inActivateTool = false; return (m_ActiveTool != nullptr); } void mitk::ToolManager::SetReferenceData(DataVectorType data) { if (data != m_ReferenceData) { // remove observers from old nodes for (auto dataIter = m_ReferenceData.begin(); dataIter != m_ReferenceData.end(); ++dataIter) { auto searchIter = m_ReferenceDataObserverTags.find(*dataIter); if (searchIter != m_ReferenceDataObserverTags.end()) { (*dataIter)->RemoveObserver(searchIter->second); } } m_ReferenceData = data; // TODO tell active tool? // attach new observers m_ReferenceDataObserverTags.clear(); for (auto dataIter = m_ReferenceData.begin(); dataIter != m_ReferenceData.end(); ++dataIter) { itk::MemberCommand::Pointer command = itk::MemberCommand::New(); command->SetCallbackFunction(this, &ToolManager::OnOneOfTheReferenceDataDeleted); command->SetCallbackFunction(this, &ToolManager::OnOneOfTheReferenceDataDeletedConst); m_ReferenceDataObserverTags.insert( std::pair((*dataIter), (*dataIter)->AddObserver(itk::DeleteEvent(), command))); } ReferenceDataChanged.Send(); } } void mitk::ToolManager::OnOneOfTheReferenceDataDeletedConst(const itk::Object *caller, const itk::EventObject &e) { OnOneOfTheReferenceDataDeleted(const_cast(caller), e); } void mitk::ToolManager::OnOneOfTheReferenceDataDeleted(itk::Object *caller, const itk::EventObject &itkNotUsed(e)) { DataVectorType v; for (auto dataIter = m_ReferenceData.begin(); dataIter != m_ReferenceData.end(); ++dataIter) { if ((void *)(*dataIter) != (void *)caller) { v.push_back(*dataIter); } else { m_ReferenceDataObserverTags.erase(*dataIter); // no tag to remove anymore } } this->SetReferenceData(v); } void mitk::ToolManager::SetReferenceData(DataNode *data) { DataVectorType v; if (data) { v.push_back(data); } SetReferenceData(v); } void mitk::ToolManager::SetWorkingData(DataVectorType data) { if (data != m_WorkingData) { // remove observers from old nodes for (auto dataIter = m_WorkingData.begin(); dataIter != m_WorkingData.end(); ++dataIter) { auto searchIter = m_WorkingDataObserverTags.find(*dataIter); if (searchIter != m_WorkingDataObserverTags.end()) { (*dataIter)->RemoveObserver(searchIter->second); } } m_WorkingData = data; // TODO tell active tool? // Quick workaround for bug #16598 if (m_WorkingData.empty()) this->ActivateTool(-1); // workaround end // attach new observers m_WorkingDataObserverTags.clear(); for (auto dataIter = m_WorkingData.begin(); dataIter != m_WorkingData.end(); ++dataIter) { itk::MemberCommand::Pointer command = itk::MemberCommand::New(); command->SetCallbackFunction(this, &ToolManager::OnOneOfTheWorkingDataDeleted); command->SetCallbackFunction(this, &ToolManager::OnOneOfTheWorkingDataDeletedConst); m_WorkingDataObserverTags.insert( std::pair((*dataIter), (*dataIter)->AddObserver(itk::DeleteEvent(), command))); } WorkingDataChanged.Send(); } } void mitk::ToolManager::OnOneOfTheWorkingDataDeletedConst(const itk::Object *caller, const itk::EventObject &e) { OnOneOfTheWorkingDataDeleted(const_cast(caller), e); } void mitk::ToolManager::OnOneOfTheWorkingDataDeleted(itk::Object *caller, const itk::EventObject &itkNotUsed(e)) { DataVectorType v; for (auto dataIter = m_WorkingData.begin(); dataIter != m_WorkingData.end(); ++dataIter) { if ((void *)(*dataIter) != (void *)caller) { v.push_back(*dataIter); } else { m_WorkingDataObserverTags.erase(*dataIter); // no tag to remove anymore } } this->SetWorkingData(v); } void mitk::ToolManager::SetWorkingData(DataNode *data) { DataVectorType v; if (data) // don't allow for nullptr nodes { v.push_back(data); } SetWorkingData(v); } void mitk::ToolManager::SetRoiData(DataVectorType data) { if (data != m_RoiData) { // remove observers from old nodes for (auto dataIter = m_RoiData.begin(); dataIter != m_RoiData.end(); ++dataIter) { auto searchIter = m_RoiDataObserverTags.find(*dataIter); if (searchIter != m_RoiDataObserverTags.end()) { (*dataIter)->RemoveObserver(searchIter->second); } } m_RoiData = data; // TODO tell active tool? // attach new observers m_RoiDataObserverTags.clear(); for (auto dataIter = m_RoiData.begin(); dataIter != m_RoiData.end(); ++dataIter) { itk::MemberCommand::Pointer command = itk::MemberCommand::New(); command->SetCallbackFunction(this, &ToolManager::OnOneOfTheRoiDataDeleted); command->SetCallbackFunction(this, &ToolManager::OnOneOfTheRoiDataDeletedConst); m_RoiDataObserverTags.insert( std::pair((*dataIter), (*dataIter)->AddObserver(itk::DeleteEvent(), command))); } RoiDataChanged.Send(); } } void mitk::ToolManager::SetRoiData(DataNode *data) { DataVectorType v; if (data) { v.push_back(data); } this->SetRoiData(v); } void mitk::ToolManager::OnOneOfTheRoiDataDeletedConst(const itk::Object *caller, const itk::EventObject &e) { OnOneOfTheRoiDataDeleted(const_cast(caller), e); } void mitk::ToolManager::OnOneOfTheRoiDataDeleted(itk::Object *caller, const itk::EventObject &itkNotUsed(e)) { DataVectorType v; for (auto dataIter = m_RoiData.begin(); dataIter != m_RoiData.end(); ++dataIter) { if ((void *)(*dataIter) != (void *)caller) { v.push_back(*dataIter); } else { m_RoiDataObserverTags.erase(*dataIter); // no tag to remove anymore } } this->SetRoiData(v); } mitk::ToolManager::DataVectorType mitk::ToolManager::GetReferenceData() { return m_ReferenceData; } mitk::DataNode *mitk::ToolManager::GetReferenceData(int idx) { try { return m_ReferenceData.at(idx); } catch (const std::exception &) { return nullptr; } } mitk::ToolManager::DataVectorType mitk::ToolManager::GetWorkingData() { return m_WorkingData; } mitk::ToolManager::DataVectorType mitk::ToolManager::GetRoiData() { return m_RoiData; } mitk::DataNode *mitk::ToolManager::GetRoiData(int idx) { try { return m_RoiData.at(idx); } catch (const std::exception &) { return nullptr; } } mitk::DataStorage::Pointer mitk::ToolManager::GetDataStorage() const { return m_DataStorage.Lock(); } void mitk::ToolManager::SetDataStorage(DataStorage &storage) { m_DataStorage = &storage; } mitk::DataNode *mitk::ToolManager::GetWorkingData(unsigned int idx) { if (m_WorkingData.empty()) return nullptr; if (m_WorkingData.size() > idx) return m_WorkingData[idx]; return nullptr; } int mitk::ToolManager::GetActiveToolID() { return m_ActiveToolID; } mitk::Tool *mitk::ToolManager::GetActiveTool() { return m_ActiveTool; } void mitk::ToolManager::RegisterClient() { if (m_RegisteredClients < 1) { if (m_ActiveTool) { m_ActiveTool->Activated(); m_ActiveToolRegistration = us::GetModuleContext()->RegisterService(m_ActiveTool, us::ServiceProperties()); } } ++m_RegisteredClients; } void mitk::ToolManager::UnregisterClient() { if (m_RegisteredClients < 1) return; --m_RegisteredClients; if (m_RegisteredClients < 1) { if (m_ActiveTool) { m_ActiveTool->Deactivated(); m_ActiveToolRegistration.Unregister(); } } } int mitk::ToolManager::GetToolID(const Tool *tool) { int id(0); for (auto iter = m_Tools.begin(); iter != m_Tools.end(); ++iter, ++id) { if (tool == iter->GetPointer()) { return id; } } return -1; } void mitk::ToolManager::OnNodeRemoved(const mitk::DataNode *node) { // check all storage vectors OnOneOfTheReferenceDataDeleted(const_cast(node), itk::DeleteEvent()); OnOneOfTheRoiDataDeleted(const_cast(node), itk::DeleteEvent()); OnOneOfTheWorkingDataDeleted(const_cast(node), itk::DeleteEvent()); } void mitk::ToolManager::OnTimeChanged(itk::Object* caller, const itk::EventObject& e) { this->OnTimeChangedConst(caller, e); } void mitk::ToolManager::OnTimeChangedConst(const itk::Object* caller, const itk::EventObject& /*e*/) { - auto currentController = m_CurrentTimeNavigationController.Lock(); + const auto currentController = m_CurrentTimeNavigationController.Lock(); if (caller == currentController) { - const auto currentTimePoint = currentController->GetSelectedTimePoint(); + const TimePointType currentTimePoint = currentController->GetSelectedTimePoint(); if (currentTimePoint != m_LastTimePoint) { m_LastTimePoint = currentTimePoint; SelectedTimePointChanged.Send(); } } } mitk::TimePointType mitk::ToolManager::GetCurrentTimePoint() const { return m_LastTimePoint; } diff --git a/Modules/Segmentation/Controllers/mitkToolManager.h b/Modules/Segmentation/Controllers/mitkToolManager.h index ebade99775..f6bbc61208 100644 --- a/Modules/Segmentation/Controllers/mitkToolManager.h +++ b/Modules/Segmentation/Controllers/mitkToolManager.h @@ -1,302 +1,302 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkToolManager_h #define mitkToolManager_h #include "mitkDataNode.h" #include "mitkDataStorage.h" #include "mitkTool.h" #include "mitkWeakPointer.h" #include #pragma GCC visibility push(default) #include #pragma GCC visibility pop #include namespace mitk { class Image; class PlaneGeometry; /** \brief Manages and coordinates instances of mitk::Tool. \sa QmitkToolSelectionBox \sa Tool \sa QmitkSegmentationView \ingroup Interaction \ingroup ToolManagerEtAl There is a separate page describing the general design of QmitkSegmentationView: \ref QmitkSegmentationTechnicalPage This class creates and manages several instances of mitk::Tool. \li ToolManager creates instances of mitk::Tool by asking the itk::ObjectFactory to list all known implementations of mitk::Tool. As a result, one has to implement both a subclass of mitk::Tool and a matching subclass of itk::ObjectFactoryBase that is registered to the top-level itk::ObjectFactory. For an example, see mitkContourToolFactory.h. (this limitiation of one-class-one-factory is due to the implementation of itk::ObjectFactory). In MITK, the right place to register the factories to itk::ObjectFactory is the mitk::QMCoreObjectFactory or mitk::SBCoreObjectFactory. \li ToolManager knows a set of "reference" DataNodes and a set of "working" DataNodes. The first application are segmentation tools, where the reference is the original image and the working data the (kind of) binary segmentation. However, ToolManager is implemented more generally, so that there could be other tools that work, e.g., with surfaces. \li There is a set of events that are sent by ToolManager. At the moment these are TODO update documentation: - mitk::ToolReferenceDataChangedEvent whenever somebody calls SetReferenceData. Most of the time this actually means that the data has changed, but there might be cases where the same data is passed to SetReferenceData a second time, so don't rely on the assumption that something actually changed. - mitk::ToolSelectedEvent is sent when a (truly) different tool was activated. In reaction to this event you can ask for the active Tool using GetActiveTool or GetActiveToolID (where nullptr or -1 indicate that NO tool is active at the moment). Design descisions: \li Not a singleton, because there could be two functionalities using tools, each one with different reference/working data. $Author$ */ class MITKSEGMENTATION_EXPORT ToolManager : public itk::Object { public: typedef std::vector ToolVectorType; typedef std::vector ToolVectorTypeConst; typedef std::vector DataVectorType; // has to be observed for delete events! typedef std::map NodeTagMapType; Message<> NodePropertiesChanged; Message<> NewNodesGenerated; Message1 NewNodeObjectsGenerated; Message<> ActiveToolChanged; Message<> ReferenceDataChanged; Message<> WorkingDataChanged; Message<> RoiDataChanged; Message<> SelectedTimePointChanged; Message1 ToolErrorMessage; Message1 GeneralToolMessage; mitkClassMacroItkParent(ToolManager, itk::Object); mitkNewMacro1Param(ToolManager, DataStorage *); /** \brief Gives you a list of all tools. This is const on purpose. */ const ToolVectorTypeConst GetTools(); int GetToolID(const Tool *tool); /** \param id The tool of interest. Counting starts with 0. */ Tool *GetToolById(int id); /** \param id The tool to activate. Provide -1 for disabling any tools. Counting starts with 0. Registeres a listner for NodeRemoved event at DataStorage (see mitk::ToolManager::OnNodeRemoved). */ bool ActivateTool(int id); template int GetToolIdByToolType() { int id = 0; for (auto iter = m_Tools.begin(); iter != m_Tools.end(); ++iter, ++id) { if (dynamic_cast(iter->GetPointer())) { return id; } } return -1; } /** \return -1 for "No tool is active" */ int GetActiveToolID(); /** \return nullptr for "No tool is active" */ Tool *GetActiveTool(); /** \brief Set a list of data/images as reference objects. */ void SetReferenceData(DataVectorType); /** \brief Set single data item/image as reference object. */ void SetReferenceData(DataNode *); /** \brief Set a list of data/images as working objects. */ void SetWorkingData(DataVectorType); /** \brief Set single data item/image as working object. */ void SetWorkingData(DataNode *); /** \brief Set a list of data/images as roi objects. */ void SetRoiData(DataVectorType); /** \brief Set a single data item/image as roi object. */ void SetRoiData(DataNode *); /** \brief Get the list of reference data. */ DataVectorType GetReferenceData(); /** \brief Get the current reference data. \warning If there is a list of items, this method will only return the first list item. */ DataNode *GetReferenceData(int); /** \brief Get the list of working data. */ DataVectorType GetWorkingData(); /** \brief Get the current working data. \warning If there is a list of items, this method will only return the first list item. */ DataNode *GetWorkingData(unsigned int); /** \brief Get the current roi data */ DataVectorType GetRoiData(); /** \brief Get the roi data at position idx */ DataNode *GetRoiData(int idx); DataStorage::Pointer GetDataStorage() const; void SetDataStorage(DataStorage &storage); /** Get the current selected time point of the RenderManager */ TimePointType GetCurrentTimePoint() const; /** \brief Tell that someone is using tools. GUI elements should call this when they become active. This method increases an internal "client count". */ void RegisterClient(); /** \brief Tell that someone is NOT using tools. GUI elements should call this when they become active. This method increases an internal "client count". */ void UnregisterClient(); /** \brief Initialize all classes derived from mitk::Tool by itkObjectFactoy */ void InitializeTools(); void OnOneOfTheReferenceDataDeletedConst(const itk::Object *caller, const itk::EventObject &e); void OnOneOfTheReferenceDataDeleted(itk::Object *caller, const itk::EventObject &e); void OnOneOfTheWorkingDataDeletedConst(const itk::Object *caller, const itk::EventObject &e); void OnOneOfTheWorkingDataDeleted(itk::Object *caller, const itk::EventObject &e); void OnOneOfTheRoiDataDeletedConst(const itk::Object *caller, const itk::EventObject &e); void OnOneOfTheRoiDataDeleted(itk::Object *caller, const itk::EventObject &e); /** \brief Connected to tool's messages This method just resends error messages coming from any of the tools. This way clients (GUIs) only have to observe one message. */ void OnToolErrorMessage(std::string s); void OnGeneralToolMessage(std::string s); protected: /** You may specify a list of tool "groups" that should be available for this ToolManager. Every Tool can report its group as a string. This constructor will try to find the tool's group inside the supplied string. If there is a match, the tool is accepted. Effectively, you can provide a human readable list like "default, lymphnodevolumetry, oldERISstuff". */ ToolManager(DataStorage *storage); // purposely hidden ~ToolManager() override; ToolVectorType m_Tools; Tool *m_ActiveTool; int m_ActiveToolID; us::ServiceRegistration m_ActiveToolRegistration; DataVectorType m_ReferenceData; NodeTagMapType m_ReferenceDataObserverTags; DataVectorType m_WorkingData; NodeTagMapType m_WorkingDataObserverTags; DataVectorType m_RoiData; NodeTagMapType m_RoiDataObserverTags; int m_RegisteredClients; WeakPointer m_DataStorage; /// \brief Callback for NodeRemove events void OnNodeRemoved(const mitk::DataNode *node); /** Callback for time changed events*/ void OnTimeChangedConst(const itk::Object* caller, const itk::EventObject& e); void OnTimeChanged(itk::Object* caller, const itk::EventObject& e); void EnsureTimeObservation(); void StopTimeObservation(); private: /** Time point of last detected change*/ TimePointType m_LastTimePoint = 0; /** Tag of the observer that listens to time changes*/ unsigned long m_TimePointObserverTag = 0; /** Pointer to the observed time stepper*/ - WeakPointer m_CurrentTimeNavigationController; + WeakPointer m_CurrentTimeNavigationController; }; } // namespace #endif diff --git a/Modules/Segmentation/Interactions/mitkLiveWireTool2D.cpp b/Modules/Segmentation/Interactions/mitkLiveWireTool2D.cpp index b7a4cd5ad5..7754a8e450 100644 --- a/Modules/Segmentation/Interactions/mitkLiveWireTool2D.cpp +++ b/Modules/Segmentation/Interactions/mitkLiveWireTool2D.cpp @@ -1,261 +1,262 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include #include #include #include +#include #include #include #include namespace mitk { MITK_TOOL_MACRO(MITKSEGMENTATION_EXPORT, LiveWireTool2D, "LiveWire tool"); } mitk::LiveWireTool2D::LiveWireTool2D() : EditableContourTool(), m_CreateAndUseDynamicCosts(false) { } mitk::LiveWireTool2D::~LiveWireTool2D() { } void mitk::LiveWireTool2D::ConnectActionsAndFunctions() { mitk::EditableContourTool::ConnectActionsAndFunctions(); CONNECT_FUNCTION("MovePoint", OnMouseMoveNoDynamicCosts); } const char **mitk::LiveWireTool2D::GetXPM() const { return mitkLiveWireTool2D_xpm; } us::ModuleResource mitk::LiveWireTool2D::GetIconResource() const { return us::GetModuleContext()->GetModule()->GetResource("LiveWire.svg"); } us::ModuleResource mitk::LiveWireTool2D::GetCursorIconResource() const { return us::GetModuleContext()->GetModule()->GetResource("LiveWire_Cursor.svg"); } const char *mitk::LiveWireTool2D::GetName() const { return "Live Wire"; } void mitk::LiveWireTool2D::UpdateLiveWireContour() { auto contour = this->GetContour(); if (nullptr != contour) { auto timeGeometry = contour->GetTimeGeometry()->Clone(); m_PreviewContour = this->m_LiveWireFilter->GetOutput(); // needed because the results of the filter are always from 0 ms // to 1 ms and the filter also resets its outputs. // generate a time geometry that is always visible as the working contour should always be. auto contourTimeGeometry = ProportionalTimeGeometry::New(); contourTimeGeometry->SetStepDuration(std::numeric_limits::max()); contourTimeGeometry->SetTimeStepGeometry(contour->GetTimeGeometry()->GetGeometryForTimeStep(0)->Clone(), 0); m_PreviewContour->SetTimeGeometry(contourTimeGeometry); m_PreviewContourNode->SetData(this->m_PreviewContour); } } void mitk::LiveWireTool2D::OnTimePointChanged() { auto reference = this->GetReferenceData(); if (nullptr == reference || m_PlaneGeometry.IsNull() || m_LiveWireFilter.IsNull() || m_PreviewContourNode.IsNull()) return; auto timeStep = reference->GetTimeGeometry()->TimePointToTimeStep(this->GetLastTimePointTriggered()); m_ReferenceDataSlice = GetAffectedImageSliceAs2DImageByTimePoint(m_PlaneGeometry, reference, timeStep); m_LiveWireFilter->SetInput(m_ReferenceDataSlice); m_LiveWireFilter->Update(); this->UpdateLiveWireContour(); RenderingManager::GetInstance()->RequestUpdateAll(); }; mitk::Point3D mitk::LiveWireTool2D::PrepareInitContour(const mitk::Point3D& clickedPoint) { // Set current slice as input for ImageToLiveWireContourFilter m_LiveWireFilter = ImageLiveWireContourModelFilter::New(); m_LiveWireFilter->SetUseCostFunction(true); m_LiveWireFilter->SetInput(m_ReferenceDataSlice); itk::Index<3> idx; m_ReferenceDataSlice->GetGeometry()->WorldToIndex(clickedPoint, idx); // Get the pixel with the highest gradient in a 7x7 region itk::Index<3> indexWithHighestGradient; AccessFixedDimensionByItk_2(m_ReferenceDataSlice, FindHighestGradientMagnitudeByITK, 2, idx, indexWithHighestGradient); Point3D adaptedClick; m_ReferenceDataSlice->GetGeometry()->IndexToWorld(indexWithHighestGradient, adaptedClick); m_CreateAndUseDynamicCosts = true; return adaptedClick; } void mitk::LiveWireTool2D::FinalizePreviewContour(const Point3D& clickedPoint) { // Add repulsive points to avoid getting the same path again std::for_each(m_PreviewContour->IteratorBegin(), m_PreviewContour->IteratorEnd(), [this](ContourElement::VertexType* vertex) { ImageLiveWireContourModelFilter::InternalImageType::IndexType idx; this->m_ReferenceDataSlice->GetGeometry()->WorldToIndex(vertex->Coordinates, idx); this->m_LiveWireFilter->AddRepulsivePoint(idx); }); EditableContourTool::FinalizePreviewContour(clickedPoint); } void mitk::LiveWireTool2D::InitializePreviewContour(const Point3D& clickedPoint) { m_PreviewContour->Clear(); // Set new start point m_LiveWireFilter->SetStartPoint(clickedPoint); if (m_CreateAndUseDynamicCosts) { auto contour = this->GetContour(); // Use dynamic cost map for next update m_LiveWireFilter->CreateDynamicCostMap(contour); m_LiveWireFilter->SetUseDynamicCostMap(true); } } void mitk::LiveWireTool2D::UpdatePreviewContour(const Point3D& clickedPoint) { // Compute LiveWire segment from last control point to current mouse position m_LiveWireFilter->SetEndPoint(clickedPoint); m_LiveWireFilter->Update(); this->UpdateLiveWireContour(); } void mitk::LiveWireTool2D::OnMouseMoveNoDynamicCosts(StateMachineAction *, InteractionEvent *interactionEvent) { m_LiveWireFilter->SetUseDynamicCostMap(false); this->OnMouseMoved(nullptr, interactionEvent); m_LiveWireFilter->SetUseDynamicCostMap(true); } void mitk::LiveWireTool2D::FinishTool() { m_LiveWireFilter->SetUseDynamicCostMap(false); m_ContourInteractor = mitk::ContourModelLiveWireInteractor::New(); m_ContourInteractor->SetDataNode(m_ContourNode); m_ContourInteractor->LoadStateMachine("ContourModelModificationInteractor.xml", us::GetModuleContext()->GetModule()); m_ContourInteractor->SetEventConfig("ContourModelModificationConfig.xml", us::GetModuleContext()->GetModule()); m_ContourInteractor->SetWorkingImage(this->m_ReferenceDataSlice); m_ContourInteractor->SetRestrictedArea(this->m_CurrentRestrictedArea); m_ContourNode->SetDataInteractor(m_ContourInteractor.GetPointer()); } template void mitk::LiveWireTool2D::FindHighestGradientMagnitudeByITK(itk::Image *inputImage, itk::Index<3> &index, itk::Index<3> &returnIndex) { typedef itk::Image InputImageType; typedef typename InputImageType::IndexType IndexType; const auto MAX_X = inputImage->GetLargestPossibleRegion().GetSize()[0]; const auto MAX_Y = inputImage->GetLargestPossibleRegion().GetSize()[1]; returnIndex[0] = index[0]; returnIndex[1] = index[1]; returnIndex[2] = 0.0; double gradientMagnitude = 0.0; double maxGradientMagnitude = 0.0; // The size and thus the region of 7x7 is only used to calculate the gradient magnitude in that region, // not for searching the maximum value. // Maximum value in each direction for size typename InputImageType::SizeType size; size[0] = 7; size[1] = 7; // Minimum value in each direction for startRegion IndexType startRegion; startRegion[0] = index[0] - 3; startRegion[1] = index[1] - 3; if (startRegion[0] < 0) startRegion[0] = 0; if (startRegion[1] < 0) startRegion[1] = 0; if (MAX_X - index[0] < 7) startRegion[0] = MAX_X - 7; if (MAX_Y - index[1] < 7) startRegion[1] = MAX_Y - 7; index[0] = startRegion[0] + 3; index[1] = startRegion[1] + 3; typename InputImageType::RegionType region; region.SetSize(size); region.SetIndex(startRegion); typedef typename itk::GradientMagnitudeImageFilter GradientMagnitudeFilterType; typename GradientMagnitudeFilterType::Pointer gradientFilter = GradientMagnitudeFilterType::New(); gradientFilter->SetInput(inputImage); gradientFilter->GetOutput()->SetRequestedRegion(region); gradientFilter->Update(); typename InputImageType::Pointer gradientMagnitudeImage; gradientMagnitudeImage = gradientFilter->GetOutput(); IndexType currentIndex; currentIndex[0] = 0; currentIndex[1] = 0; // Search max (approximate) gradient magnitude for (int x = -1; x <= 1; ++x) { currentIndex[0] = index[0] + x; for (int y = -1; y <= 1; ++y) { currentIndex[1] = index[1] + y; gradientMagnitude = gradientMagnitudeImage->GetPixel(currentIndex); // Check for new max if (maxGradientMagnitude < gradientMagnitude) { maxGradientMagnitude = gradientMagnitude; returnIndex[0] = currentIndex[0]; returnIndex[1] = currentIndex[1]; returnIndex[2] = 0.0; } } currentIndex[1] = index[1]; } } diff --git a/Modules/Segmentation/Interactions/mitkSegTool2D.cpp b/Modules/Segmentation/Interactions/mitkSegTool2D.cpp index d4c5bb1b6e..3cab141cdc 100644 --- a/Modules/Segmentation/Interactions/mitkSegTool2D.cpp +++ b/Modules/Segmentation/Interactions/mitkSegTool2D.cpp @@ -1,798 +1,798 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkSegTool2D.h" #include "mitkToolManager.h" #include "mitkBaseRenderer.h" #include "mitkDataStorage.h" #include "mitkPlaneGeometry.h" +#include // Include of the new ImageExtractor #include "mitkMorphologicalOperations.h" #include "mitkPlanarCircle.h" #include "usGetModuleContext.h" // Includes for 3DSurfaceInterpolation #include "mitkImageTimeSelector.h" #include "mitkImageToContourFilter.h" #include "mitkSurfaceInterpolationController.h" // includes for resling and overwriting #include #include #include #include #include "mitkOperationEvent.h" #include "mitkUndoController.h" #include #include "mitkAbstractTransformGeometry.h" #include "mitkLabelSetImage.h" #include "mitkContourModelUtils.h" // #include #include #include #define ROUND(a) ((a) > 0 ? (int)((a) + 0.5) : -(int)(0.5 - (a))) bool mitk::SegTool2D::m_SurfaceInterpolationEnabled = true; mitk::SegTool2D::SliceInformation::SliceInformation(const mitk::Image* aSlice, const mitk::PlaneGeometry* aPlane, mitk::TimeStepType aTimestep) : slice(aSlice), plane(aPlane), timestep(aTimestep) { } mitk::SegTool2D::SegTool2D(const char *type, const us::Module *interactorModule) : Tool(type, interactorModule), m_Contourmarkername("Position") { Tool::m_EventConfig = "DisplayConfigBlockLMB.xml"; } mitk::SegTool2D::~SegTool2D() { } bool mitk::SegTool2D::FilterEvents(InteractionEvent *interactionEvent, DataNode *) { const auto *positionEvent = dynamic_cast(interactionEvent); bool isValidEvent = (positionEvent && // Only events of type mitk::InteractionPositionEvent interactionEvent->GetSender()->GetMapperID() == BaseRenderer::Standard2D // Only events from the 2D renderwindows ); return isValidEvent; } bool mitk::SegTool2D::DetermineAffectedImageSlice(const Image *image, const PlaneGeometry *plane, int &affectedDimension, int &affectedSlice) { assert(image); assert(plane); // compare normal of plane to the three axis vectors of the image Vector3D normal = plane->GetNormal(); Vector3D imageNormal0 = image->GetSlicedGeometry()->GetAxisVector(0); Vector3D imageNormal1 = image->GetSlicedGeometry()->GetAxisVector(1); Vector3D imageNormal2 = image->GetSlicedGeometry()->GetAxisVector(2); normal.Normalize(); imageNormal0.Normalize(); imageNormal1.Normalize(); imageNormal2.Normalize(); imageNormal0.SetVnlVector(vnl_cross_3d(normal.GetVnlVector(), imageNormal0.GetVnlVector())); imageNormal1.SetVnlVector(vnl_cross_3d(normal.GetVnlVector(), imageNormal1.GetVnlVector())); imageNormal2.SetVnlVector(vnl_cross_3d(normal.GetVnlVector(), imageNormal2.GetVnlVector())); double eps(0.00001); // axial if (imageNormal2.GetNorm() <= eps) { affectedDimension = 2; } // sagittal else if (imageNormal1.GetNorm() <= eps) { affectedDimension = 1; } // coronal else if (imageNormal0.GetNorm() <= eps) { affectedDimension = 0; } else { affectedDimension = -1; // no idea return false; } // determine slice number in image BaseGeometry *imageGeometry = image->GetGeometry(0); Point3D testPoint = imageGeometry->GetCenter(); Point3D projectedPoint; plane->Project(testPoint, projectedPoint); Point3D indexPoint; imageGeometry->WorldToIndex(projectedPoint, indexPoint); affectedSlice = ROUND(indexPoint[affectedDimension]); MITK_DEBUG << "indexPoint " << indexPoint << " affectedDimension " << affectedDimension << " affectedSlice " << affectedSlice; // check if this index is still within the image if (affectedSlice < 0 || affectedSlice >= static_cast(image->GetDimension(affectedDimension))) return false; return true; } void mitk::SegTool2D::UpdateSurfaceInterpolation(const Image *slice, const Image *workingImage, const PlaneGeometry *plane, bool detectIntersection) { std::vector slices = { SliceInformation(slice, plane, 0)}; Self::UpdateSurfaceInterpolation(slices, workingImage, detectIntersection, 0, 0); } void mitk::SegTool2D::RemoveContourFromInterpolator(const SliceInformation& sliceInfo) { mitk::SurfaceInterpolationController::ContourPositionInformation contourInfo; contourInfo.ContourNormal = sliceInfo.plane->GetNormal(); contourInfo.ContourPoint = sliceInfo.plane->GetOrigin(); mitk::SurfaceInterpolationController::GetInstance()->RemoveContour(contourInfo); } void mitk::SegTool2D::UpdateSurfaceInterpolation(const std::vector& sliceInfos, const Image* workingImage, bool detectIntersection, unsigned int activeLayerID, mitk::Label::PixelType activeLabelValue) { if (!m_SurfaceInterpolationEnabled) return; //Remark: the ImageTimeSelector is just needed to extract a timestep/channel of //the image in order to get the image dimension (time dimension and channel dimension //stripped away). Therfore it is OK to always use time step 0 and channel 0 mitk::ImageTimeSelector::Pointer timeSelector = mitk::ImageTimeSelector::New(); timeSelector->SetInput(workingImage); timeSelector->SetTimeNr(0); timeSelector->SetChannelNr(0); timeSelector->Update(); const auto dimRefImg = timeSelector->GetOutput()->GetDimension(); if (dimRefImg != 3) return; std::vector contourList; contourList.reserve(sliceInfos.size()); ImageToContourFilter::Pointer contourExtractor = ImageToContourFilter::New(); std::vector relevantSlices = sliceInfos; if (detectIntersection) { relevantSlices.clear(); for (const auto& sliceInfo : sliceInfos) { // Test whether there is something to extract or whether the slice just contains intersections of others mitk::Image::Pointer slice2 = sliceInfo.slice->Clone(); mitk::MorphologicalOperations::Erode(slice2, 2, mitk::MorphologicalOperations::Ball); contourExtractor->SetInput(slice2); contourExtractor->Update(); mitk::Surface::Pointer contour = contourExtractor->GetOutput(); if (contour->GetVtkPolyData()->GetNumberOfPoints() == 0) { Self::RemoveContourFromInterpolator(sliceInfo); } else { relevantSlices.push_back(sliceInfo); } } } if (relevantSlices.empty()) return; std::vector contourPlanes; for (const auto& sliceInfo : relevantSlices) { contourExtractor->SetInput(sliceInfo.slice); contourExtractor->SetContourValue(activeLabelValue); contourExtractor->Update(); mitk::Surface::Pointer contour = contourExtractor->GetOutput(); if (contour->GetVtkPolyData()->GetNumberOfPoints() == 0) { Self::RemoveContourFromInterpolator(sliceInfo); } else { vtkSmartPointer intArray = vtkSmartPointer::New(); intArray->InsertNextValue(activeLabelValue); intArray->InsertNextValue(activeLayerID); contour->GetVtkPolyData()->GetFieldData()->AddArray(intArray); contour->DisconnectPipeline(); contourList.push_back(contour); contourPlanes.push_back(sliceInfo.plane); } } mitk::SurfaceInterpolationController::GetInstance()->AddNewContours(contourList, contourPlanes); } mitk::Image::Pointer mitk::SegTool2D::GetAffectedImageSliceAs2DImage(const InteractionPositionEvent *positionEvent, const Image *image, unsigned int component /*= 0*/) { if (!positionEvent) { return nullptr; } assert(positionEvent->GetSender()); // sure, right? const auto timeStep = positionEvent->GetSender()->GetTimeStep(image); // get the timestep of the visible part (time-wise) of the image return GetAffectedImageSliceAs2DImage(positionEvent->GetSender()->GetCurrentWorldPlaneGeometry(), image, timeStep, component); } mitk::Image::Pointer mitk::SegTool2D::GetAffectedImageSliceAs2DImageByTimePoint(const PlaneGeometry* planeGeometry, const Image* image, TimePointType timePoint, unsigned int component /*= 0*/) { if (!image || !planeGeometry) { return nullptr; } if (!image->GetTimeGeometry()->IsValidTimePoint(timePoint)) return nullptr; return SegTool2D::GetAffectedImageSliceAs2DImage(planeGeometry, image, image->GetTimeGeometry()->TimePointToTimeStep(timePoint), component); } mitk::Image::Pointer mitk::SegTool2D::GetAffectedImageSliceAs2DImage(const PlaneGeometry *planeGeometry, const Image *image, TimeStepType timeStep, unsigned int component /*= 0*/) { if (!image || !planeGeometry) { return nullptr; } // Make sure that for reslicing and overwriting the same alogrithm is used. We can specify the mode of the vtk reslicer vtkSmartPointer reslice = vtkSmartPointer::New(); // set to false to extract a slice reslice->SetOverwriteMode(false); reslice->Modified(); // use ExtractSliceFilter with our specific vtkImageReslice for overwriting and extracting mitk::ExtractSliceFilter::Pointer extractor = mitk::ExtractSliceFilter::New(reslice); extractor->SetInput(image); extractor->SetTimeStep(timeStep); extractor->SetWorldGeometry(planeGeometry); extractor->SetVtkOutputRequest(false); extractor->SetResliceTransformByGeometry(image->GetTimeGeometry()->GetGeometryForTimeStep(timeStep)); // additionally extract the given component // default is 0; the extractor checks for multi-component images extractor->SetComponent(component); extractor->Modified(); extractor->Update(); Image::Pointer slice = extractor->GetOutput(); return slice; } mitk::Image::Pointer mitk::SegTool2D::GetAffectedWorkingSlice(const InteractionPositionEvent *positionEvent) const { const auto workingNode = this->GetWorkingDataNode(); if (!workingNode) { return nullptr; } const auto *workingImage = dynamic_cast(workingNode->GetData()); if (!workingImage) { return nullptr; } return GetAffectedImageSliceAs2DImage(positionEvent, workingImage); } mitk::Image::Pointer mitk::SegTool2D::GetAffectedReferenceSlice(const InteractionPositionEvent *positionEvent) const { DataNode* referenceNode = this->GetReferenceDataNode(); if (!referenceNode) { return nullptr; } auto *referenceImage = dynamic_cast(referenceNode->GetData()); if (!referenceImage) { return nullptr; } int displayedComponent = 0; if (referenceNode->GetIntProperty("Image.Displayed Component", displayedComponent)) { // found the displayed component return GetAffectedImageSliceAs2DImage(positionEvent, referenceImage, displayedComponent); } else { return GetAffectedImageSliceAs2DImage(positionEvent, referenceImage); } } mitk::Image::Pointer mitk::SegTool2D::GetAffectedReferenceSlice(const PlaneGeometry* planeGeometry, TimeStepType timeStep) const { DataNode* referenceNode = this->GetReferenceDataNode(); if (!referenceNode) { return nullptr; } auto* referenceImage = dynamic_cast(referenceNode->GetData()); if (!referenceImage) { return nullptr; } int displayedComponent = 0; if (referenceNode->GetIntProperty("Image.Displayed Component", displayedComponent)) { // found the displayed component return GetAffectedImageSliceAs2DImage(planeGeometry, referenceImage, timeStep, displayedComponent); } else { return GetAffectedImageSliceAs2DImage(planeGeometry, referenceImage, timeStep); } } void mitk::SegTool2D::Activated() { Superclass::Activated(); this->GetToolManager()->SelectedTimePointChanged += mitk::MessageDelegate(this, &mitk::SegTool2D::OnTimePointChangedInternal); m_LastTimePointTriggered = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); } void mitk::SegTool2D::Deactivated() { this->GetToolManager()->SelectedTimePointChanged -= mitk::MessageDelegate(this, &mitk::SegTool2D::OnTimePointChangedInternal); Superclass::Deactivated(); } void mitk::SegTool2D::OnTimePointChangedInternal() { if (m_IsTimePointChangeAware && nullptr != this->GetWorkingDataNode()) { - const auto timePoint = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); - + const TimePointType timePoint = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); if (timePoint != m_LastTimePointTriggered) { m_LastTimePointTriggered = timePoint; this->OnTimePointChanged(); } } } void mitk::SegTool2D::OnTimePointChanged() { //default implementation does nothing } mitk::DataNode* mitk::SegTool2D::GetWorkingDataNode() const { if (nullptr != this->GetToolManager()) { return this->GetToolManager()->GetWorkingData(0); } return nullptr; } mitk::Image* mitk::SegTool2D::GetWorkingData() const { auto node = this->GetWorkingDataNode(); if (nullptr != node) { return dynamic_cast(node->GetData()); } return nullptr; } mitk::DataNode* mitk::SegTool2D::GetReferenceDataNode() const { if (nullptr != this->GetToolManager()) { return this->GetToolManager()->GetReferenceData(0); } return nullptr; } mitk::Image* mitk::SegTool2D::GetReferenceData() const { auto node = this->GetReferenceDataNode(); if (nullptr != node) { return dynamic_cast(node->GetData()); } return nullptr; } void mitk::SegTool2D::WriteBackSegmentationResult(const InteractionPositionEvent *positionEvent, const Image * segmentationResult) { if (!positionEvent) return; const PlaneGeometry *planeGeometry((positionEvent->GetSender()->GetCurrentWorldPlaneGeometry())); const auto *abstractTransformGeometry( dynamic_cast(positionEvent->GetSender()->GetCurrentWorldPlaneGeometry())); if (planeGeometry && segmentationResult && !abstractTransformGeometry) { const auto workingNode = this->GetWorkingDataNode(); auto *image = dynamic_cast(workingNode->GetData()); const auto timeStep = positionEvent->GetSender()->GetTimeStep(image); this->WriteBackSegmentationResult(planeGeometry, segmentationResult, timeStep); } } void mitk::SegTool2D::WriteBackSegmentationResult(const DataNode* workingNode, const PlaneGeometry* planeGeometry, const Image* segmentationResult, TimeStepType timeStep) { if (!planeGeometry || !segmentationResult) return; SliceInformation sliceInfo(segmentationResult, const_cast(planeGeometry), timeStep); Self::WriteBackSegmentationResults(workingNode, { sliceInfo }, true); } void mitk::SegTool2D::WriteBackSegmentationResult(const PlaneGeometry *planeGeometry, const Image * segmentationResult, TimeStepType timeStep) { if (!planeGeometry || !segmentationResult) return; if(m_LastEventSender == nullptr) { return; } - unsigned int currentSlicePosition = m_LastEventSender->GetSliceNavigationController()->GetSlice()->GetPos(); + unsigned int currentSlicePosition = m_LastEventSender->GetSliceNavigationController()->GetStepper()->GetPos(); SliceInformation sliceInfo(segmentationResult, const_cast(planeGeometry), timeStep); sliceInfo.slicePosition = currentSlicePosition; WriteBackSegmentationResults({ sliceInfo }, true); } void mitk::SegTool2D::WriteBackSegmentationResults(const std::vector &sliceList, bool writeSliceToVolume) { if (sliceList.empty()) { return; } if (nullptr == m_LastEventSender) { MITK_WARN << "Cannot write tool results. Tool seems to be in an invalid state, as no interaction event was recieved but is expected."; return; } const auto workingNode = this->GetWorkingDataNode(); // the first geometry is needed otherwise restoring the position is not working const auto* plane3 = dynamic_cast(dynamic_cast( m_LastEventSender->GetSliceNavigationController()->GetCurrentGeometry3D()) ->GetPlaneGeometry(0)); - unsigned int slicePosition = m_LastEventSender->GetSliceNavigationController()->GetSlice()->GetPos(); + const unsigned int slicePosition = m_LastEventSender->GetSliceNavigationController()->GetStepper()->GetPos(); mitk::SegTool2D::WriteBackSegmentationResults(workingNode, sliceList, writeSliceToVolume); /* A cleaner solution would be to add a contour marker for each slice info. It currently does not work as the contour markers expect that the plane is always the plane of slice 0. Had not the time to do it properly no. Should be solved by T28146*/ this->AddContourmarker(plane3, slicePosition); } void mitk::SegTool2D::WriteBackSegmentationResults(const DataNode* workingNode, const std::vector& sliceList, bool writeSliceToVolume) { if (sliceList.empty()) { return; } if (nullptr == workingNode) { mitkThrow() << "Cannot write slice to working node. Working node is invalid."; } auto image = dynamic_cast(workingNode->GetData()); mitk::Label::PixelType activeLabelValue = 0; unsigned int activeLayerID = 0; try{ auto labelSetImage = dynamic_cast(workingNode->GetData()); activeLayerID = labelSetImage->GetActiveLayer(); activeLabelValue = labelSetImage->GetActiveLabelSet()->GetActiveLabel()->GetValue(); } catch(...) { mitkThrow() << "Working node does not contain labelSetImage."; } if (nullptr == image) { mitkThrow() << "Cannot write slice to working node. Working node does not contain an image."; } for (const auto& sliceInfo : sliceList) { if (writeSliceToVolume && nullptr != sliceInfo.plane && sliceInfo.slice.IsNotNull()) { SegTool2D::WriteSliceToVolume(image, sliceInfo, true); } } SegTool2D::UpdateSurfaceInterpolation(sliceList, image, false, activeLayerID, activeLabelValue); // also mark its node as modified (T27308). Can be removed if T27307 // is properly solved if (workingNode != nullptr) workingNode->Modified(); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void mitk::SegTool2D::WriteSliceToVolume(Image* workingImage, const PlaneGeometry* planeGeometry, const Image* slice, TimeStepType timeStep, bool allowUndo) { SliceInformation sliceInfo(slice, planeGeometry, timeStep); WriteSliceToVolume(workingImage, sliceInfo, allowUndo); } void mitk::SegTool2D::WriteSliceToVolume(Image* workingImage, const SliceInformation &sliceInfo, bool allowUndo) { if (nullptr == workingImage) { mitkThrow() << "Cannot write slice to working node. Working node does not contain an image."; } DiffSliceOperation* undoOperation = nullptr; if (allowUndo) { /*============= BEGIN undo/redo feature block ========================*/ // Create undo operation by caching the not yet modified slices mitk::Image::Pointer originalSlice = GetAffectedImageSliceAs2DImage(sliceInfo.plane, workingImage, sliceInfo.timestep); undoOperation = new DiffSliceOperation(workingImage, originalSlice, dynamic_cast(originalSlice->GetGeometry()), sliceInfo.timestep, sliceInfo.plane); /*============= END undo/redo feature block ========================*/ } // Make sure that for reslicing and overwriting the same alogrithm is used. We can specify the mode of the vtk // reslicer vtkSmartPointer reslice = vtkSmartPointer::New(); // Set the slice as 'input' // casting const away is needed and OK as long the OverwriteMode of // mitkVTKImageOverwrite is true. // Reason: because then the input slice is not touched but // used to overwrite the input of the ExtractSliceFilter. auto noneConstSlice = const_cast(sliceInfo.slice.GetPointer()); reslice->SetInputSlice(noneConstSlice->GetVtkImageData()); // set overwrite mode to true to write back to the image volume reslice->SetOverwriteMode(true); reslice->Modified(); mitk::ExtractSliceFilter::Pointer extractor = mitk::ExtractSliceFilter::New(reslice); extractor->SetInput(workingImage); extractor->SetTimeStep(sliceInfo.timestep); extractor->SetWorldGeometry(sliceInfo.plane); extractor->SetVtkOutputRequest(false); extractor->SetResliceTransformByGeometry(workingImage->GetGeometry(sliceInfo.timestep)); extractor->Modified(); extractor->Update(); // the image was modified within the pipeline, but not marked so workingImage->Modified(); workingImage->GetVtkImageData()->Modified(); if (allowUndo) { /*============= BEGIN undo/redo feature block ========================*/ // specify the redo operation with the edited slice auto* doOperation = new DiffSliceOperation(workingImage, extractor->GetOutput(), dynamic_cast(sliceInfo.slice->GetGeometry()), sliceInfo.timestep, sliceInfo.plane); // create an operation event for the undo stack OperationEvent* undoStackItem = new OperationEvent(DiffSliceOperationApplier::GetInstance(), doOperation, undoOperation, "Segmentation"); // add it to the undo controller UndoStackItem::IncCurrObjectEventId(); UndoStackItem::IncCurrGroupEventId(); UndoController::GetCurrentUndoModel()->SetOperationEvent(undoStackItem); /*============= END undo/redo feature block ========================*/ } } void mitk::SegTool2D::SetShowMarkerNodes(bool status) { m_ShowMarkerNodes = status; } void mitk::SegTool2D::SetEnable3DInterpolation(bool enabled) { m_SurfaceInterpolationEnabled = enabled; } int mitk::SegTool2D::AddContourmarker(const PlaneGeometry* planeGeometry, unsigned int sliceIndex) { if (planeGeometry == nullptr) return -1; us::ServiceReference serviceRef = us::GetModuleContext()->GetServiceReference(); PlanePositionManagerService *service = us::GetModuleContext()->GetService(serviceRef); unsigned int size = service->GetNumberOfPlanePositions(); unsigned int id = service->AddNewPlanePosition(planeGeometry, sliceIndex); mitk::PlanarCircle::Pointer contourMarker = mitk::PlanarCircle::New(); mitk::Point2D p1; planeGeometry->Map(planeGeometry->GetCenter(), p1); contourMarker->SetPlaneGeometry(planeGeometry->Clone()); contourMarker->PlaceFigure(p1); contourMarker->SetCurrentControlPoint(p1); contourMarker->SetProperty("initiallyplaced", mitk::BoolProperty::New(true)); std::stringstream markerStream; auto workingNode = this->GetWorkingDataNode(); markerStream << m_Contourmarkername; markerStream << " "; markerStream << id + 1; DataNode::Pointer rotatedContourNode = DataNode::New(); rotatedContourNode->SetData(contourMarker); rotatedContourNode->SetProperty("name", StringProperty::New(markerStream.str())); rotatedContourNode->SetProperty("isContourMarker", BoolProperty::New(true)); rotatedContourNode->SetBoolProperty("PlanarFigureInitializedWindow", true, m_LastEventSender); rotatedContourNode->SetProperty("includeInBoundingBox", BoolProperty::New(false)); rotatedContourNode->SetProperty("helper object", mitk::BoolProperty::New(!m_ShowMarkerNodes)); rotatedContourNode->SetProperty("planarfigure.drawcontrolpoints", BoolProperty::New(false)); rotatedContourNode->SetProperty("planarfigure.drawname", BoolProperty::New(false)); rotatedContourNode->SetProperty("planarfigure.drawoutline", BoolProperty::New(false)); rotatedContourNode->SetProperty("planarfigure.drawshadow", BoolProperty::New(false)); if (planeGeometry) { if (id == size) { this->GetToolManager()->GetDataStorage()->Add(rotatedContourNode, workingNode); } else { mitk::NodePredicateProperty::Pointer isMarker = mitk::NodePredicateProperty::New("isContourMarker", mitk::BoolProperty::New(true)); mitk::DataStorage::SetOfObjects::ConstPointer markers = this->GetToolManager()->GetDataStorage()->GetDerivations(workingNode, isMarker); for (auto iter = markers->begin(); iter != markers->end(); ++iter) { std::string nodeName = (*iter)->GetName(); unsigned int t = nodeName.find_last_of(" "); unsigned int markerId = atof(nodeName.substr(t + 1).c_str()) - 1; if (id == markerId) { return id; } } this->GetToolManager()->GetDataStorage()->Add(rotatedContourNode, workingNode); } } return id; } void mitk::SegTool2D::InteractiveSegmentationBugMessage(const std::string &message) const { MITK_ERROR << "********************************************************************************" << std::endl << " " << message << std::endl << "********************************************************************************" << std::endl << " " << std::endl << " If your image is rotated or the 2D views don't really contain the patient image, try to press the " "button next to the image selection. " << std::endl << " " << std::endl << " Please file a BUG REPORT: " << std::endl << " https://phabricator.mitk.org/" << std::endl << " Contain the following information:" << std::endl << " - What image were you working on?" << std::endl << " - Which region of the image?" << std::endl << " - Which tool did you use?" << std::endl << " - What did you do?" << std::endl << " - What happened (not)? What did you expect?" << std::endl; } void mitk::SegTool2D::WritePreviewOnWorkingImage( Image *targetSlice, const Image *sourceSlice, const Image *workingImage, int paintingPixelValue) { if (nullptr == targetSlice) { mitkThrow() << "Cannot write preview on working image. Target slice does not point to a valid instance."; } if (nullptr == sourceSlice) { mitkThrow() << "Cannot write preview on working image. Source slice does not point to a valid instance."; } if (nullptr == workingImage) { mitkThrow() << "Cannot write preview on working image. Working image does not point to a valid instance."; } auto constVtkSource = sourceSlice->GetVtkImageData(); /*Need to const cast because Vtk interface does not support const correctly. (or I am not experienced enough to use it correctly)*/ auto nonConstVtkSource = const_cast(constVtkSource); ContourModelUtils::FillSliceInSlice(nonConstVtkSource, targetSlice->GetVtkImageData(), workingImage, paintingPixelValue, 1.0); } bool mitk::SegTool2D::IsPositionEventInsideImageRegion(mitk::InteractionPositionEvent* positionEvent, const mitk::BaseData* data) { bool isPositionEventInsideImageRegion = nullptr != data && data->GetGeometry()->IsInside(positionEvent->GetPositionInWorld()); if (!isPositionEventInsideImageRegion) MITK_WARN("EditableContourTool") << "PositionEvent is outside ImageRegion!"; return isPositionEventInsideImageRegion; } diff --git a/Modules/Segmentation/Interactions/mitkSegWithPreviewTool.cpp b/Modules/Segmentation/Interactions/mitkSegWithPreviewTool.cpp index ca649187e3..9ff48f4df5 100644 --- a/Modules/Segmentation/Interactions/mitkSegWithPreviewTool.cpp +++ b/Modules/Segmentation/Interactions/mitkSegWithPreviewTool.cpp @@ -1,818 +1,819 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkSegWithPreviewTool.h" #include "mitkToolManager.h" #include "mitkColorProperty.h" #include "mitkProperties.h" #include "mitkDataStorage.h" #include "mitkRenderingManager.h" +#include #include "mitkImageAccessByItk.h" #include "mitkImageCast.h" #include "mitkLabelSetImage.h" #include "mitkMaskAndCutRoiImageFilter.h" #include "mitkPadImageFilter.h" #include "mitkNodePredicateGeometry.h" #include "mitkSegTool2D.h" mitk::SegWithPreviewTool::SegWithPreviewTool(bool lazyDynamicPreviews): Tool("dummy"), m_LazyDynamicPreviews(lazyDynamicPreviews) { m_ProgressCommand = ToolCommand::New(); } mitk::SegWithPreviewTool::SegWithPreviewTool(bool lazyDynamicPreviews, const char* interactorType, const us::Module* interactorModule) : Tool(interactorType, interactorModule), m_LazyDynamicPreviews(lazyDynamicPreviews) { m_ProgressCommand = ToolCommand::New(); } mitk::SegWithPreviewTool::~SegWithPreviewTool() { } void mitk::SegWithPreviewTool::SetMergeStyle(MultiLabelSegmentation::MergeStyle mergeStyle) { m_MergeStyle = mergeStyle; this->Modified(); } void mitk::SegWithPreviewTool::SetOverwriteStyle(MultiLabelSegmentation::OverwriteStyle overwriteStyle) { m_OverwriteStyle = overwriteStyle; this->Modified(); } void mitk::SegWithPreviewTool::SetLabelTransferScope(LabelTransferScope labelTransferScope) { m_LabelTransferScope = labelTransferScope; this->Modified(); } void mitk::SegWithPreviewTool::SetLabelTransferMode(LabelTransferMode labelTransferMode) { m_LabelTransferMode = labelTransferMode; this->Modified(); } void mitk::SegWithPreviewTool::SetSelectedLabels(const SelectedLabelVectorType& labelsToTransfer) { m_SelectedLabels = labelsToTransfer; this->Modified(); } bool mitk::SegWithPreviewTool::CanHandle(const BaseData* referenceData, const BaseData* workingData) const { if (!Superclass::CanHandle(referenceData, workingData)) return false; if (workingData == nullptr) return false; auto* referenceImage = dynamic_cast(referenceData); if (referenceImage == nullptr) return false; auto* labelSet = dynamic_cast(workingData); if (labelSet != nullptr) return true; auto* workingImage = dynamic_cast(workingData); if (workingImage == nullptr) return false; // If the working image is a normal image and not a label set image // it must have the same pixel type as a label set. return MakeScalarPixelType< DefaultSegmentationDataType >() == workingImage->GetPixelType(); } void mitk::SegWithPreviewTool::Activated() { Superclass::Activated(); this->GetToolManager()->RoiDataChanged += MessageDelegate(this, &SegWithPreviewTool::OnRoiDataChanged); this->GetToolManager()->SelectedTimePointChanged += MessageDelegate(this, &SegWithPreviewTool::OnTimePointChanged); m_ReferenceDataNode = this->GetToolManager()->GetReferenceData(0); m_SegmentationInputNode = m_ReferenceDataNode; m_LastTimePointOfUpdate = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); if (m_PreviewSegmentationNode.IsNull()) { m_PreviewSegmentationNode = DataNode::New(); m_PreviewSegmentationNode->SetProperty("color", ColorProperty::New(0.0, 1.0, 0.0)); m_PreviewSegmentationNode->SetProperty("name", StringProperty::New(std::string(this->GetName())+" preview")); m_PreviewSegmentationNode->SetProperty("opacity", FloatProperty::New(0.3)); m_PreviewSegmentationNode->SetProperty("binary", BoolProperty::New(true)); m_PreviewSegmentationNode->SetProperty("helper object", BoolProperty::New(true)); } if (m_SegmentationInputNode.IsNotNull()) { this->ResetPreviewNode(); this->InitiateToolByInput(); } else { this->GetToolManager()->ActivateTool(-1); } } void mitk::SegWithPreviewTool::Deactivated() { this->GetToolManager()->RoiDataChanged -= MessageDelegate(this, &SegWithPreviewTool::OnRoiDataChanged); this->GetToolManager()->SelectedTimePointChanged -= MessageDelegate(this, &SegWithPreviewTool::OnTimePointChanged); m_SegmentationInputNode = nullptr; m_ReferenceDataNode = nullptr; m_WorkingPlaneGeometry = nullptr; try { if (DataStorage *storage = this->GetToolManager()->GetDataStorage()) { storage->Remove(m_PreviewSegmentationNode); RenderingManager::GetInstance()->RequestUpdateAll(); } } catch (...) { // don't care } if (m_PreviewSegmentationNode.IsNotNull()) { m_PreviewSegmentationNode->SetData(nullptr); } Superclass::Deactivated(); } void mitk::SegWithPreviewTool::ConfirmSegmentation() { bool labelChanged = this->EnsureUpToDateUserDefinedActiveLabel(); if ((m_LazyDynamicPreviews && m_CreateAllTimeSteps) || labelChanged) { // The tool should create all time steps but is currently in lazy mode, // thus ensure that a preview for all time steps is available. this->UpdatePreview(true); } CreateResultSegmentationFromPreview(); RenderingManager::GetInstance()->RequestUpdateAll(); if (!m_KeepActiveAfterAccept) { this->GetToolManager()->ActivateTool(-1); } } void mitk::SegWithPreviewTool::InitiateToolByInput() { //default implementation does nothing. //implement in derived classes to change behavior } mitk::LabelSetImage* mitk::SegWithPreviewTool::GetPreviewSegmentation() { if (m_PreviewSegmentationNode.IsNull()) { return nullptr; } return dynamic_cast(m_PreviewSegmentationNode->GetData()); } const mitk::LabelSetImage* mitk::SegWithPreviewTool::GetPreviewSegmentation() const { if (m_PreviewSegmentationNode.IsNull()) { return nullptr; } return dynamic_cast(m_PreviewSegmentationNode->GetData()); } mitk::DataNode* mitk::SegWithPreviewTool::GetPreviewSegmentationNode() { return m_PreviewSegmentationNode; } const mitk::Image* mitk::SegWithPreviewTool::GetSegmentationInput() const { if (m_SegmentationInputNode.IsNull()) { return nullptr; } return dynamic_cast(m_SegmentationInputNode->GetData()); } const mitk::Image* mitk::SegWithPreviewTool::GetReferenceData() const { if (m_ReferenceDataNode.IsNull()) { return nullptr; } return dynamic_cast(m_ReferenceDataNode->GetData()); } template void ClearBufferProcessing(ImageType* itkImage) { itkImage->FillBuffer(0); } void mitk::SegWithPreviewTool::ResetPreviewContentAtTimeStep(unsigned int timeStep) { auto previewImage = GetImageByTimeStep(this->GetPreviewSegmentation(), timeStep); if (nullptr != previewImage) { AccessByItk(previewImage, ClearBufferProcessing); } } void mitk::SegWithPreviewTool::ResetPreviewContent() { auto previewImage = this->GetPreviewSegmentation(); if (nullptr != previewImage) { auto castedPreviewImage = dynamic_cast(previewImage); if (nullptr == castedPreviewImage) mitkThrow() << "Application is on wrong state / invalid tool implementation. Preview image should always be of type LabelSetImage now."; castedPreviewImage->ClearBuffer(); } } void mitk::SegWithPreviewTool::ResetPreviewNode() { if (m_IsUpdating) { mitkThrow() << "Used tool is implemented incorrectly. ResetPreviewNode is called while preview update is ongoing. Check implementation!"; } itk::RGBPixel previewColor; previewColor[0] = 0.0f; previewColor[1] = 1.0f; previewColor[2] = 0.0f; const auto image = this->GetSegmentationInput(); if (nullptr != image) { LabelSetImage::ConstPointer workingImage = dynamic_cast(this->GetToolManager()->GetWorkingData(0)->GetData()); if (workingImage.IsNotNull()) { auto newPreviewImage = workingImage->Clone(); if (this->GetResetsToEmptyPreview()) { newPreviewImage->ClearBuffer(); } if (newPreviewImage.IsNull()) { MITK_ERROR << "Cannot create preview helper objects. Unable to clone working image"; return; } m_PreviewSegmentationNode->SetData(newPreviewImage); auto* activeLabelSet = newPreviewImage->GetActiveLabelSet(); if (nullptr == activeLabelSet) { newPreviewImage->AddLayer(); activeLabelSet = newPreviewImage->GetActiveLabelSet(); } auto* activeLabel = activeLabelSet->GetActiveLabel(); if (nullptr == activeLabel) { activeLabel = activeLabelSet->AddLabel("toolresult", previewColor); activeLabelSet = newPreviewImage->GetActiveLabelSet(); activeLabelSet->UpdateLookupTable(activeLabel->GetValue()); } else if (m_UseSpecialPreviewColor) { // Let's paint the feedback node green... activeLabel->SetColor(previewColor); activeLabelSet->UpdateLookupTable(activeLabel->GetValue()); } activeLabel->SetVisible(true); } else { Image::ConstPointer workingImageBin = dynamic_cast(this->GetToolManager()->GetWorkingData(0)->GetData()); if (workingImageBin.IsNotNull()) { Image::Pointer newPreviewImage; if (this->GetResetsToEmptyPreview()) { newPreviewImage = Image::New(); newPreviewImage->Initialize(workingImageBin); } else { auto newPreviewImage = workingImageBin->Clone(); } if (newPreviewImage.IsNull()) { MITK_ERROR << "Cannot create preview helper objects. Unable to clone working image"; return; } m_PreviewSegmentationNode->SetData(newPreviewImage); } else { mitkThrow() << "Tool is an invalid state. Cannot setup preview node. Working data is an unsupported class and should have not been accepted by CanHandle()."; } } m_PreviewSegmentationNode->SetColor(previewColor); m_PreviewSegmentationNode->SetOpacity(0.5); int layer(50); m_ReferenceDataNode->GetIntProperty("layer", layer); m_PreviewSegmentationNode->SetIntProperty("layer", layer + 1); if (DataStorage *ds = this->GetToolManager()->GetDataStorage()) { if (!ds->Exists(m_PreviewSegmentationNode)) ds->Add(m_PreviewSegmentationNode, m_ReferenceDataNode); } } } mitk::SegWithPreviewTool::LabelMappingType mitk::SegWithPreviewTool::GetLabelMapping() const { LabelSetImage::LabelValueType offset = 0; if (LabelTransferMode::AddLabel == m_LabelTransferMode && LabelTransferScope::ActiveLabel!=m_LabelTransferScope) { //If we are not just working on active label and transfer mode is add, we need to compute an offset for adding the //preview labels instat of just mapping them to existing segmentation labels. const auto segmentation = this->GetTargetSegmentation(); if (nullptr == segmentation) mitkThrow() << "Invalid state of SegWithPreviewTool. Cannot GetLabelMapping if no target segmentation is set."; auto labels = segmentation->GetLabels(); auto maxLabelIter = std::max_element(std::begin(labels), std::end(labels), [](const Label::Pointer& a, const Label::Pointer& b) { return a->GetValue() < b->GetValue(); }); if (maxLabelIter != labels.end()) { offset = maxLabelIter->GetPointer()->GetValue(); } } LabelMappingType labelMapping = {}; switch (this->m_LabelTransferScope) { case LabelTransferScope::SelectedLabels: { for (auto label : this->m_SelectedLabels) { labelMapping.push_back({label, label + offset}); } } break; case LabelTransferScope::AllLabels: { const auto labelSet = this->GetPreviewSegmentation()->GetActiveLabelSet(); for (auto labelIter = labelSet->IteratorConstBegin(); labelIter != labelSet->IteratorConstEnd(); ++labelIter) { labelMapping.push_back({labelIter->second->GetValue(), labelIter->second->GetValue() + offset}); } } break; default: { if (m_SelectedLabels.empty()) mitkThrow() << "Failed to generate label transfer mapping. Tool is in an invalid state, as " "LabelTransferScope==ActiveLabel but no label is indicated as selected label. Check " "implementation of derived tool class."; if (m_SelectedLabels.size() > 1) mitkThrow() << "Failed to generate label transfer mapping. Tool is in an invalid state, as " "LabelTransferScope==ActiveLabel but more then one selected label is indicated." "Should be only one. Check implementation of derived tool class."; labelMapping.push_back({m_SelectedLabels.front(), this->GetUserDefinedActiveLabel()}); } break; } return labelMapping; } void mitk::SegWithPreviewTool::TransferImageAtTimeStep(const Image* sourceImage, Image* destinationImage, const TimeStepType timeStep, const LabelMappingType& labelMapping) { try { Image::ConstPointer sourceImageAtTimeStep = this->GetImageByTimeStep(sourceImage, timeStep); if (sourceImageAtTimeStep->GetPixelType() != destinationImage->GetPixelType()) { mitkThrow() << "Cannot transfer images. Tool is in an invalid state, source image and destination image do not have the same pixel type. " << "Source pixel type: " << sourceImage->GetPixelType().GetTypeAsString() << "; destination pixel type: " << destinationImage->GetPixelType().GetTypeAsString(); } if (!Equal(*(sourceImage->GetGeometry(timeStep)), *(destinationImage->GetGeometry(timeStep)), NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_COORDINATE_PRECISION, NODE_PREDICATE_GEOMETRY_DEFAULT_CHECK_DIRECTION_PRECISION, false)) { mitkThrow() << "Cannot transfer images. Tool is in an invalid state, source image and destination image do not have the same geometry."; } if (nullptr != this->GetWorkingPlaneGeometry()) { auto sourceSlice = SegTool2D::GetAffectedImageSliceAs2DImage(this->GetWorkingPlaneGeometry(), sourceImage, timeStep); SegTool2D::WriteBackSegmentationResult(this->GetTargetSegmentationNode(), m_WorkingPlaneGeometry, sourceSlice, timeStep); } else { //take care of the full segmentation volume auto sourceLSImage = dynamic_cast(sourceImage); auto destLSImage = dynamic_cast(destinationImage); TransferLabelContentAtTimeStep(sourceLSImage, destLSImage, timeStep, labelMapping, m_MergeStyle, m_OverwriteStyle); } } catch (mitk::Exception& e) { Tool::ErrorMessage(e.GetDescription()); mitkReThrow(e); } } void mitk::SegWithPreviewTool::CreateResultSegmentationFromPreview() { const auto segInput = this->GetSegmentationInput(); auto previewImage = this->GetPreviewSegmentation(); if (nullptr != segInput && nullptr != previewImage) { DataNode::Pointer resultSegmentationNode = GetTargetSegmentationNode(); if (resultSegmentationNode.IsNotNull()) { - const auto timePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); + const TimePointType timePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); auto resultSegmentation = dynamic_cast(resultSegmentationNode->GetData()); // REMARK: the following code in this scope assumes that previewImage and resultSegmentation // are clones of the working referenceImage (segmentation provided to the tool). Therefore they have // the same time geometry. if (previewImage->GetTimeSteps() != resultSegmentation->GetTimeSteps()) { mitkThrow() << "Cannot confirm/transfer segmentation. Internal tool state is invalid." << " Preview segmentation and segmentation result image have different time geometries."; } auto labelMapping = this->GetLabelMapping(); this->PreparePreviewToResultTransfer(labelMapping); if (m_CreateAllTimeSteps) { for (unsigned int timeStep = 0; timeStep < previewImage->GetTimeSteps(); ++timeStep) { this->TransferImageAtTimeStep(previewImage, resultSegmentation, timeStep, labelMapping); } } else { const auto timeStep = resultSegmentation->GetTimeGeometry()->TimePointToTimeStep(timePoint); this->TransferImageAtTimeStep(previewImage, resultSegmentation, timeStep, labelMapping); } // since we are maybe working on a smaller referenceImage, pad it to the size of the original referenceImage if (m_ReferenceDataNode.GetPointer() != m_SegmentationInputNode.GetPointer()) { PadImageFilter::Pointer padFilter = PadImageFilter::New(); padFilter->SetInput(0, resultSegmentation); padFilter->SetInput(1, dynamic_cast(m_ReferenceDataNode->GetData())); padFilter->SetBinaryFilter(true); padFilter->SetUpperThreshold(1); padFilter->SetLowerThreshold(1); padFilter->Update(); resultSegmentationNode->SetData(padFilter->GetOutput()); } this->EnsureTargetSegmentationNodeInDataStorage(); } } } void mitk::SegWithPreviewTool::OnRoiDataChanged() { DataNode::ConstPointer node = this->GetToolManager()->GetRoiData(0); if (node.IsNotNull()) { MaskAndCutRoiImageFilter::Pointer roiFilter = MaskAndCutRoiImageFilter::New(); Image::Pointer image = dynamic_cast(m_SegmentationInputNode->GetData()); if (image.IsNull()) return; roiFilter->SetInput(image); roiFilter->SetRegionOfInterest(node->GetData()); roiFilter->Update(); DataNode::Pointer tmpNode = DataNode::New(); tmpNode->SetData(roiFilter->GetOutput()); m_SegmentationInputNode = tmpNode; } else m_SegmentationInputNode = m_ReferenceDataNode; this->ResetPreviewNode(); this->InitiateToolByInput(); this->UpdatePreview(); } void mitk::SegWithPreviewTool::OnTimePointChanged() { if (m_IsTimePointChangeAware && m_PreviewSegmentationNode.IsNotNull() && m_SegmentationInputNode.IsNotNull()) { - const auto timePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); + const TimePointType timePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); const bool isStaticSegOnDynamicImage = m_PreviewSegmentationNode->GetData()->GetTimeSteps() == 1 && m_SegmentationInputNode->GetData()->GetTimeSteps() > 1; if (timePoint!=m_LastTimePointOfUpdate && (isStaticSegOnDynamicImage || m_LazyDynamicPreviews)) { //we only need to update either because we are lazzy //or because we have a static segmentation with a dynamic referenceImage this->UpdatePreview(); } } } bool mitk::SegWithPreviewTool::EnsureUpToDateUserDefinedActiveLabel() { bool labelChanged = true; const auto workingImage = dynamic_cast(this->GetToolManager()->GetWorkingData(0)->GetData()); if (const auto& labelSetImage = dynamic_cast(workingImage)) { // this is a fix for T28131 / T28986, which should be refactored if T28524 is being worked on auto newLabel = labelSetImage->GetActiveLabel(labelSetImage->GetActiveLayer())->GetValue(); labelChanged = newLabel != m_UserDefinedActiveLabel; m_UserDefinedActiveLabel = newLabel; } else { m_UserDefinedActiveLabel = 1; labelChanged = false; } return labelChanged; } void mitk::SegWithPreviewTool::UpdatePreview(bool ignoreLazyPreviewSetting) { const auto inputImage = this->GetSegmentationInput(); auto previewImage = this->GetPreviewSegmentation(); int progress_steps = 200; const auto workingImage = dynamic_cast(this->GetToolManager()->GetWorkingData(0)->GetData()); this->EnsureUpToDateUserDefinedActiveLabel(); this->CurrentlyBusy.Send(true); m_IsUpdating = true; this->UpdatePrepare(); - const auto timePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); + const TimePointType timePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); try { if (nullptr != inputImage && nullptr != previewImage) { m_ProgressCommand->AddStepsToDo(progress_steps); if (previewImage->GetTimeSteps() > 1 && (ignoreLazyPreviewSetting || !m_LazyDynamicPreviews)) { for (unsigned int timeStep = 0; timeStep < previewImage->GetTimeSteps(); ++timeStep) { Image::ConstPointer feedBackImage; Image::ConstPointer currentSegImage; auto previewTimePoint = previewImage->GetTimeGeometry()->TimeStepToTimePoint(timeStep); auto inputTimeStep = inputImage->GetTimeGeometry()->TimePointToTimeStep(previewTimePoint); if (nullptr != this->GetWorkingPlaneGeometry()) { //only extract a specific slice defined by the working plane as feedback referenceImage. feedBackImage = SegTool2D::GetAffectedImageSliceAs2DImage(this->GetWorkingPlaneGeometry(), inputImage, inputTimeStep); currentSegImage = SegTool2D::GetAffectedImageSliceAs2DImageByTimePoint(this->GetWorkingPlaneGeometry(), workingImage, previewTimePoint); } else { //work on the whole feedback referenceImage feedBackImage = this->GetImageByTimeStep(inputImage, inputTimeStep); currentSegImage = this->GetImageByTimePoint(workingImage, previewTimePoint); } this->DoUpdatePreview(feedBackImage, currentSegImage, previewImage, timeStep); } } else { Image::ConstPointer feedBackImage; Image::ConstPointer currentSegImage; if (nullptr != this->GetWorkingPlaneGeometry()) { feedBackImage = SegTool2D::GetAffectedImageSliceAs2DImageByTimePoint(this->GetWorkingPlaneGeometry(), inputImage, timePoint); currentSegImage = SegTool2D::GetAffectedImageSliceAs2DImageByTimePoint(this->GetWorkingPlaneGeometry(), workingImage, timePoint); } else { feedBackImage = this->GetImageByTimePoint(inputImage, timePoint); currentSegImage = this->GetImageByTimePoint(workingImage, timePoint); } auto timeStep = previewImage->GetTimeGeometry()->TimePointToTimeStep(timePoint); this->DoUpdatePreview(feedBackImage, currentSegImage, previewImage, timeStep); } RenderingManager::GetInstance()->RequestUpdateAll(); } } catch (itk::ExceptionObject & excep) { MITK_ERROR << "Exception caught: " << excep.GetDescription(); m_ProgressCommand->SetProgress(progress_steps); std::string msg = excep.GetDescription(); ErrorMessage.Send(msg); } catch (...) { m_ProgressCommand->SetProgress(progress_steps); m_IsUpdating = false; CurrentlyBusy.Send(false); throw; } this->UpdateCleanUp(); m_LastTimePointOfUpdate = timePoint; m_ProgressCommand->SetProgress(progress_steps); m_IsUpdating = false; CurrentlyBusy.Send(false); } bool mitk::SegWithPreviewTool::IsUpdating() const { return m_IsUpdating; } void mitk::SegWithPreviewTool::UpdatePrepare() { // default implementation does nothing //reimplement in derived classes for special behavior } void mitk::SegWithPreviewTool::UpdateCleanUp() { // default implementation does nothing //reimplement in derived classes for special behavior } void mitk::SegWithPreviewTool::TransferLabelInformation(const LabelMappingType& labelMapping, const mitk::LabelSetImage* source, mitk::LabelSetImage* target) { for (const auto& [sourceLabel, targetLabel] : labelMapping) { if (LabelSetImage::UnlabeledValue != sourceLabel && LabelSetImage::UnlabeledValue != targetLabel && !target->ExistLabel(targetLabel, target->GetActiveLayer())) { if (!source->ExistLabel(sourceLabel, source->GetActiveLayer())) { mitkThrow() << "Cannot prepare segmentation for preview transfer. Preview seems invalid as label is missing. Missing label: " << sourceLabel; } auto clonedLabel = source->GetLabel(sourceLabel)->Clone(); clonedLabel->SetValue(targetLabel); target->GetActiveLabelSet()->AddLabel(clonedLabel); } } } void mitk::SegWithPreviewTool::PreparePreviewToResultTransfer(const LabelMappingType& labelMapping) { DataNode::Pointer resultSegmentationNode = GetTargetSegmentationNode(); if (resultSegmentationNode.IsNotNull()) { auto resultSegmentation = dynamic_cast(resultSegmentationNode->GetData()); if (nullptr == resultSegmentation) { mitkThrow() << "Cannot prepare segmentation for preview transfer. Tool is in invalid state as segmentation is not existing or of right type"; } auto preview = this->GetPreviewSegmentation(); TransferLabelInformation(labelMapping, preview, resultSegmentation); } } mitk::TimePointType mitk::SegWithPreviewTool::GetLastTimePointOfUpdate() const { return m_LastTimePointOfUpdate; } mitk::LabelSetImage::LabelValueType mitk::SegWithPreviewTool::GetActiveLabelValueOfPreview() const { const auto previewImage = this->GetPreviewSegmentation(); const auto activeLabel = previewImage->GetActiveLabel(previewImage->GetActiveLayer()); if (nullptr == activeLabel) mitkThrow() << this->GetNameOfClass() <<" is in an invalid state, as " "preview has no active label indicated. Check " "implementation of the class."; return activeLabel->GetValue(); } const char* mitk::SegWithPreviewTool::GetGroup() const { return "autoSegmentation"; } mitk::Image::ConstPointer mitk::SegWithPreviewTool::GetImageByTimeStep(const mitk::Image* image, TimeStepType timestep) { return SelectImageByTimeStep(image, timestep); } mitk::Image::Pointer mitk::SegWithPreviewTool::GetImageByTimeStep(mitk::Image* image, TimeStepType timestep) { return SelectImageByTimeStep(image, timestep); } mitk::Image::ConstPointer mitk::SegWithPreviewTool::GetImageByTimePoint(const mitk::Image* image, TimePointType timePoint) { return SelectImageByTimePoint(image, timePoint); } void mitk::SegWithPreviewTool::EnsureTargetSegmentationNodeInDataStorage() const { auto targetNode = this->GetTargetSegmentationNode(); auto dataStorage = this->GetToolManager()->GetDataStorage(); if (!dataStorage->Exists(targetNode)) { dataStorage->Add(targetNode, this->GetToolManager()->GetReferenceData(0)); } } std::string mitk::SegWithPreviewTool::GetCurrentSegmentationName() { auto workingData = this->GetToolManager()->GetWorkingData(0); return nullptr != workingData ? workingData->GetName() : ""; } mitk::DataNode* mitk::SegWithPreviewTool::GetTargetSegmentationNode() const { return this->GetToolManager()->GetWorkingData(0); } mitk::LabelSetImage* mitk::SegWithPreviewTool::GetTargetSegmentation() const { auto node = this->GetTargetSegmentationNode(); if (nullptr == node) return nullptr; return dynamic_cast(node->GetData()); } void mitk::SegWithPreviewTool::TransferLabelSetImageContent(const LabelSetImage* source, LabelSetImage* target, TimeStepType timeStep) { mitk::ImageReadAccessor newMitkImgAcc(source); LabelMappingType labelMapping; const auto labelSet = source->GetActiveLabelSet(); for (auto labelIter = labelSet->IteratorConstBegin(); labelIter != labelSet->IteratorConstEnd(); ++labelIter) { labelMapping.push_back({ labelIter->second->GetValue(),labelIter->second->GetValue() }); } TransferLabelInformation(labelMapping, source, target); target->SetVolume(newMitkImgAcc.GetData(), timeStep); } diff --git a/Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.cpp b/Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.cpp index df94a29994..912b186306 100644 --- a/Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.cpp +++ b/Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.cpp @@ -1,2007 +1,2039 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkSlicesInterpolator.h" #include "QmitkRenderWindow.h" #include "QmitkRenderWindowWidget.h" #include "mitkApplyDiffImageOperation.h" #include "mitkColorProperty.h" #include "mitkCoreObjectFactory.h" #include "mitkDiffImageApplier.h" #include "mitkInteractionConst.h" #include "mitkLevelWindowProperty.h" #include "mitkOperationEvent.h" #include "mitkProgressBar.h" #include "mitkProperties.h" #include "mitkRenderingManager.h" #include "mitkSegTool2D.h" #include "mitkSliceNavigationController.h" #include "mitkSurfaceToImageFilter.h" +#include #include "mitkToolManager.h" #include "mitkUndoController.h" #include #include #include #include #include #include #include #include #include #include #include #include // Includes for the merge operation #include "mitkImageToContourFilter.h" #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include namespace { template itk::SmartPointer GetData(const mitk::DataNode* dataNode) { return nullptr != dataNode ? dynamic_cast(dataNode->GetData()) : nullptr; } } float SURFACE_COLOR_RGB[3] = {0.49f, 1.0f, 0.16f}; -const std::map QmitkSlicesInterpolator::createActionToSlicer(const QList& windows) +const QmitkSlicesInterpolator::ActionToSliceDimensionMapType QmitkSlicesInterpolator::CreateActionToSlicer(const QList& windows) { std::map actionToSliceDimension; for (auto* window : windows) { std::string windowName; auto renderWindowWidget = dynamic_cast(window->parentWidget()); if (renderWindowWidget) { windowName = renderWindowWidget->GetCornerAnnotationText(); } else { windowName = window->GetRenderer()->GetName(); } auto slicer = window->GetSliceNavigationController(); actionToSliceDimension[new QAction(QString::fromStdString(windowName), nullptr)] = slicer; } return actionToSliceDimension; } // Check whether the given contours are coplanar bool AreContoursCoplanar(mitk::SurfaceInterpolationController::ContourPositionInformation leftHandSide, mitk::SurfaceInterpolationController::ContourPositionInformation rightHandSide) { // Here we check two things: // 1. Whether the normals of both contours are at least parallel // 2. Whether both contours lie in the same plane // Check for coplanarity: // a. Span a vector between two points one from each contour // b. Calculate dot product for the vector and one of the normals // c. If the dot is zero the two vectors are orthogonal and the contours are coplanar double vec[3]; vec[0] = leftHandSide.ContourPoint[0] - rightHandSide.ContourPoint[0]; vec[1] = leftHandSide.ContourPoint[1] - rightHandSide.ContourPoint[1]; vec[2] = leftHandSide.ContourPoint[2] - rightHandSide.ContourPoint[2]; double n[3]; n[0] = rightHandSide.ContourNormal[0]; n[1] = rightHandSide.ContourNormal[1]; n[2] = rightHandSide.ContourNormal[2]; double dot = vtkMath::Dot(n, vec); double n2[3]; n2[0] = leftHandSide.ContourNormal[0]; n2[1] = leftHandSide.ContourNormal[1]; n2[2] = leftHandSide.ContourNormal[2]; // The normals of both contours have to be parallel but not of the same orientation double lengthLHS = leftHandSide.ContourNormal.GetNorm(); double lengthRHS = rightHandSide.ContourNormal.GetNorm(); double dot2 = vtkMath::Dot(n, n2); bool contoursParallel = mitk::Equal(fabs(lengthLHS * lengthRHS), fabs(dot2), 0.001); if (mitk::Equal(dot, 0.0, 0.001) && contoursParallel) return true; else return false; } mitk::Image::Pointer ExtractSliceFromImage(mitk::Image* image, const mitk::PlaneGeometry * contourPlane, unsigned int timeStep) { vtkSmartPointer reslice = vtkSmartPointer::New(); // set to false to extract a slice reslice->SetOverwriteMode(false); reslice->Modified(); mitk::ExtractSliceFilter::Pointer extractor = mitk::ExtractSliceFilter::New(reslice); extractor->SetInput(image); extractor->SetTimeStep(timeStep); extractor->SetWorldGeometry(contourPlane); extractor->SetVtkOutputRequest(false); extractor->SetResliceTransformByGeometry(image->GetTimeGeometry()->GetGeometryForTimeStep(timeStep)); extractor->Update(); mitk::Image::Pointer slice = extractor->GetOutput(); return slice; } template std::vector GetPixelValuesPresentInImage(mitk::LabelSetImage* labelSetImage) { std::vector pixelsPresent; mitk::ImagePixelReadAccessor readAccessor(labelSetImage); std::size_t numberOfPixels = 1; for (size_t dim = 0; dim < VImageDimension; ++dim) numberOfPixels *= static_cast(readAccessor.GetDimension(dim)); auto src = readAccessor.GetData(); for (std::size_t i = 0; i < numberOfPixels; ++i) { mitk::Label::PixelType pixelVal = *(src + i); if ( (std::find(pixelsPresent.begin(), pixelsPresent.end(), pixelVal) == pixelsPresent.end()) && (pixelVal != mitk::LabelSetImage::UnlabeledValue) ) pixelsPresent.push_back(pixelVal); } return pixelsPresent; } template ModifyLabelActionTrigerred ModifyLabelProcessing(mitk::LabelSetImage* labelSetImage, mitk::SurfaceInterpolationController::Pointer surfaceInterpolator, unsigned int timePoint) { auto currentLayerID = labelSetImage->GetActiveLayer(); auto numTimeSteps = labelSetImage->GetTimeSteps(); ModifyLabelActionTrigerred actionTriggered = ModifyLabelActionTrigerred::Null; auto* currentContourList = surfaceInterpolator->GetContours(timePoint, currentLayerID); while (nullptr == currentContourList) { surfaceInterpolator->OnAddLayer(); currentContourList = surfaceInterpolator->GetContours(timePoint, currentLayerID); } mitk::LabelSetImage::Pointer labelSetImage2 = labelSetImage->Clone(); mitk::ImagePixelReadAccessor readAccessor(labelSetImage2.GetPointer()); for (auto& contour : *currentContourList) { mitk::Label::PixelType contourPixelValue; itk::Index<3> itkIndex; labelSetImage2->GetGeometry()->WorldToIndex(contour.ContourPoint, itkIndex); if (VImageDimension == 4) { itk::Index time3DIndex; for (size_t i = 0; i < itkIndex.size(); ++i) time3DIndex[i] = itkIndex[i]; time3DIndex[3] = timePoint; contourPixelValue = readAccessor.GetPixelByIndexSafe(time3DIndex); } else if (VImageDimension == 3) { itk::Index geomIndex; for (size_t i = 0; i < itkIndex.size(); ++i) geomIndex[i] = itkIndex[i]; contourPixelValue = readAccessor.GetPixelByIndexSafe(geomIndex); } if (contour.LabelValue != contourPixelValue) { if (contourPixelValue == 0) // Erase label { for (size_t t = 0; t < numTimeSteps; ++t) surfaceInterpolator->RemoveContours(contour.LabelValue, t, currentLayerID); actionTriggered = ModifyLabelActionTrigerred::Erase; } else { contour.LabelValue = contourPixelValue; actionTriggered = ModifyLabelActionTrigerred::Merge; } } } return actionTriggered; } QmitkSlicesInterpolator::QmitkSlicesInterpolator(QWidget *parent, const char * /*name*/) : QWidget(parent), m_Interpolator(mitk::SegmentationInterpolationController::New()), m_SurfaceInterpolator(mitk::SurfaceInterpolationController::GetInstance()), m_ToolManager(nullptr), m_Initialized(false), m_LastSNC(nullptr), m_LastSliceIndex(0), m_2DInterpolationEnabled(false), m_3DInterpolationEnabled(false), m_PreviousActiveLabelValue(0), m_CurrentActiveLabelValue(0), m_PreviousLayerIndex(0), m_CurrentLayerIndex(0), m_FirstRun(true) { m_GroupBoxEnableExclusiveInterpolationMode = new QGroupBox("Interpolation", this); QVBoxLayout *vboxLayout = new QVBoxLayout(m_GroupBoxEnableExclusiveInterpolationMode); m_EdgeDetector = mitk::FeatureBasedEdgeDetectionFilter::New(); m_PointScorer = mitk::PointCloudScoringFilter::New(); m_CmbInterpolation = new QComboBox(m_GroupBoxEnableExclusiveInterpolationMode); m_CmbInterpolation->addItem("Disabled"); m_CmbInterpolation->addItem("2-Dimensional"); m_CmbInterpolation->addItem("3-Dimensional"); vboxLayout->addWidget(m_CmbInterpolation); m_BtnApply2D = new QPushButton("Confirm for single slice", m_GroupBoxEnableExclusiveInterpolationMode); vboxLayout->addWidget(m_BtnApply2D); m_BtnApplyForAllSlices2D = new QPushButton("Confirm for all slices", m_GroupBoxEnableExclusiveInterpolationMode); vboxLayout->addWidget(m_BtnApplyForAllSlices2D); m_BtnApply3D = new QPushButton("Confirm", m_GroupBoxEnableExclusiveInterpolationMode); vboxLayout->addWidget(m_BtnApply3D); // T28261 // m_BtnSuggestPlane = new QPushButton("Suggest a plane", m_GroupBoxEnableExclusiveInterpolationMode); // vboxLayout->addWidget(m_BtnSuggestPlane); m_BtnReinit3DInterpolation = new QPushButton("Reinit Interpolation", m_GroupBoxEnableExclusiveInterpolationMode); vboxLayout->addWidget(m_BtnReinit3DInterpolation); m_ChkShowPositionNodes = new QCheckBox("Show Position Nodes", m_GroupBoxEnableExclusiveInterpolationMode); vboxLayout->addWidget(m_ChkShowPositionNodes); this->HideAllInterpolationControls(); connect(m_CmbInterpolation, SIGNAL(currentIndexChanged(int)), this, SLOT(OnInterpolationMethodChanged(int))); connect(m_BtnApply2D, SIGNAL(clicked()), this, SLOT(OnAcceptInterpolationClicked())); connect(m_BtnApplyForAllSlices2D, SIGNAL(clicked()), this, SLOT(OnAcceptAllInterpolationsClicked())); connect(m_BtnApply3D, SIGNAL(clicked()), this, SLOT(OnAccept3DInterpolationClicked())); connect(m_BtnReinit3DInterpolation, SIGNAL(clicked()), this, SLOT(OnReinit3DInterpolation())); connect(m_ChkShowPositionNodes, SIGNAL(toggled(bool)), this, SLOT(OnShowMarkers(bool))); connect(m_ChkShowPositionNodes, SIGNAL(toggled(bool)), this, SIGNAL(SignalShowMarkerNodes(bool))); QHBoxLayout *layout = new QHBoxLayout(this); layout->addWidget(m_GroupBoxEnableExclusiveInterpolationMode); this->setLayout(layout); itk::ReceptorMemberCommand::Pointer command = itk::ReceptorMemberCommand::New(); command->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnInterpolationInfoChanged); InterpolationInfoChangedObserverTag = m_Interpolator->AddObserver(itk::ModifiedEvent(), command); itk::ReceptorMemberCommand::Pointer command2 = itk::ReceptorMemberCommand::New(); command2->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnSurfaceInterpolationInfoChanged); SurfaceInterpolationInfoChangedObserverTag = m_SurfaceInterpolator->AddObserver(itk::ModifiedEvent(), command2); auto command3 = itk::ReceptorMemberCommand::New(); command3->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnInterpolationAborted); InterpolationAbortedObserverTag = m_Interpolator->AddObserver(itk::AbortEvent(), command3); // feedback node and its visualization properties m_FeedbackNode = mitk::DataNode::New(); mitk::CoreObjectFactory::GetInstance()->SetDefaultProperties(m_FeedbackNode); m_FeedbackNode->SetProperty("binary", mitk::BoolProperty::New(true)); m_FeedbackNode->SetProperty("outline binary", mitk::BoolProperty::New(true)); m_FeedbackNode->SetProperty("color", mitk::ColorProperty::New(255.0, 255.0, 0.0)); m_FeedbackNode->SetProperty("texture interpolation", mitk::BoolProperty::New(false)); m_FeedbackNode->SetProperty("layer", mitk::IntProperty::New(20)); m_FeedbackNode->SetProperty("levelwindow", mitk::LevelWindowProperty::New(mitk::LevelWindow(0, 1))); m_FeedbackNode->SetProperty("name", mitk::StringProperty::New("Interpolation feedback")); m_FeedbackNode->SetProperty("opacity", mitk::FloatProperty::New(0.8)); m_FeedbackNode->SetProperty("helper object", mitk::BoolProperty::New(true)); m_InterpolatedSurfaceNode = mitk::DataNode::New(); m_InterpolatedSurfaceNode->SetProperty("color", mitk::ColorProperty::New(SURFACE_COLOR_RGB)); m_InterpolatedSurfaceNode->SetProperty("name", mitk::StringProperty::New("Surface Interpolation feedback")); m_InterpolatedSurfaceNode->SetProperty("opacity", mitk::FloatProperty::New(0.5)); m_InterpolatedSurfaceNode->SetProperty("line width", mitk::FloatProperty::New(4.0f)); m_InterpolatedSurfaceNode->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_InterpolatedSurfaceNode->SetProperty("helper object", mitk::BoolProperty::New(true)); m_InterpolatedSurfaceNode->SetVisibility(false); m_3DContourNode = mitk::DataNode::New(); m_3DContourNode->SetProperty("color", mitk::ColorProperty::New(0.0, 0.0, 0.0)); m_3DContourNode->SetProperty("hidden object", mitk::BoolProperty::New(true)); m_3DContourNode->SetProperty("name", mitk::StringProperty::New("Drawn Contours")); m_3DContourNode->SetProperty("material.representation", mitk::VtkRepresentationProperty::New(VTK_WIREFRAME)); m_3DContourNode->SetProperty("material.wireframeLineWidth", mitk::FloatProperty::New(2.0f)); m_3DContourNode->SetProperty("3DContourContainer", mitk::BoolProperty::New(true)); m_3DContourNode->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_3DContourNode->SetVisibility(false); QWidget::setContentsMargins(0, 0, 0, 0); if (QWidget::layout() != nullptr) { QWidget::layout()->setContentsMargins(0, 0, 0, 0); } // For running 3D Interpolation in background // create a QFuture and a QFutureWatcher connect(&m_Watcher, SIGNAL(started()), this, SLOT(StartUpdateInterpolationTimer())); connect(&m_Watcher, SIGNAL(finished()), this, SLOT(OnSurfaceInterpolationFinished())); connect(&m_Watcher, SIGNAL(finished()), this, SLOT(StopUpdateInterpolationTimer())); m_Timer = new QTimer(this); connect(m_Timer, SIGNAL(timeout()), this, SLOT(ChangeSurfaceColor())); } void QmitkSlicesInterpolator::SetDataStorage(mitk::DataStorage::Pointer storage) { if (m_DataStorage == storage) { return; } if (m_DataStorage.IsNotNull()) { m_DataStorage->RemoveNodeEvent.RemoveListener( mitk::MessageDelegate1(this, &QmitkSlicesInterpolator::NodeRemoved) ); } m_DataStorage = storage; m_SurfaceInterpolator->SetDataStorage(storage); if (m_DataStorage.IsNotNull()) { m_DataStorage->RemoveNodeEvent.AddListener( mitk::MessageDelegate1(this, &QmitkSlicesInterpolator::NodeRemoved) ); } } mitk::DataStorage *QmitkSlicesInterpolator::GetDataStorage() { if (m_DataStorage.IsNotNull()) { return m_DataStorage; } else { return nullptr; } } void QmitkSlicesInterpolator::InitializeWindow(QmitkRenderWindow* window) { auto slicer = window->GetSliceNavigationController(); if (slicer == nullptr) { MITK_WARN << "Tried setting up interpolation for a render window that does not have a slice navigation controller set"; return; } // Has to be initialized m_LastSNC = slicer; - m_TimePoints.insert(slicer, slicer->GetSelectedTimePoint()); itk::MemberCommand::Pointer deleteCommand = itk::MemberCommand::New(); deleteCommand->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnSliceNavigationControllerDeleted); m_ControllerToDeleteObserverTag[slicer] = slicer->AddObserver(itk::DeleteEvent(), deleteCommand); - itk::MemberCommand::Pointer timeChangedCommand = - itk::MemberCommand::New(); - timeChangedCommand->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnTimeChanged); - m_ControllerToTimeObserverTag[slicer] = slicer->AddObserver(mitk::SliceNavigationController::TimeGeometryEvent(nullptr, 0), timeChangedCommand); - itk::MemberCommand::Pointer sliceChangedCommand = itk::MemberCommand::New(); sliceChangedCommand->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnSliceChanged); m_ControllerToSliceObserverTag[slicer] = slicer->AddObserver(mitk::SliceNavigationController::GeometrySliceEvent(nullptr, 0), sliceChangedCommand); } void QmitkSlicesInterpolator::Initialize(mitk::ToolManager *toolManager, const QList& windows) { Q_ASSERT(!windows.empty()); if (m_Initialized) { // remove old observers this->Uninitialize(); } m_ToolManager = toolManager; if (m_ToolManager) { // set enabled only if a segmentation is selected mitk::DataNode *node = m_ToolManager->GetWorkingData(0); QWidget::setEnabled(node != nullptr); // react whenever the set of selected segmentation changes m_ToolManager->WorkingDataChanged += mitk::MessageDelegate(this, &QmitkSlicesInterpolator::OnToolManagerWorkingDataModified); m_ToolManager->ReferenceDataChanged += mitk::MessageDelegate( this, &QmitkSlicesInterpolator::OnToolManagerReferenceDataModified); + auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + itk::MemberCommand::Pointer timeChangedCommand = + itk::MemberCommand::New(); + timeChangedCommand->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnTimeChanged); + m_ControllerToTimeObserverTag = + timeNavigationController->AddObserver(mitk::TimeNavigationController::TimeEvent(0), timeChangedCommand); + + m_TimePoint = timeNavigationController->GetSelectedTimePoint(); + // connect to the slice navigation controller. after each change, call the interpolator for (auto* window : windows) { this->InitializeWindow(window); } - m_ActionToSlicer = createActionToSlicer(windows); + m_ActionToSlicerMap = CreateActionToSlicer(windows); } m_Initialized = true; } void QmitkSlicesInterpolator::Uninitialize() { if (m_ToolManager.IsNotNull()) { m_ToolManager->WorkingDataChanged -= mitk::MessageDelegate(this, &QmitkSlicesInterpolator::OnToolManagerWorkingDataModified); m_ToolManager->ReferenceDataChanged -= mitk::MessageDelegate( this, &QmitkSlicesInterpolator::OnToolManagerReferenceDataModified); } - for (auto* slicer : m_ControllerToTimeObserverTag.keys()) + + auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + timeNavigationController->RemoveObserver(m_ControllerToTimeObserverTag); + +for (auto* slicer : m_ControllerToSliceObserverTag.keys()) { slicer->RemoveObserver(m_ControllerToDeleteObserverTag.take(slicer)); - slicer->RemoveObserver(m_ControllerToTimeObserverTag.take(slicer)); slicer->RemoveObserver(m_ControllerToSliceObserverTag.take(slicer)); } this->ClearSegmentationObservers(); - - m_ActionToSlicer.clear(); + m_ActionToSlicerMap.clear(); m_ToolManager = nullptr; m_Initialized = false; } QmitkSlicesInterpolator::~QmitkSlicesInterpolator() { if (m_Initialized) { // remove old observers this->Uninitialize(); } WaitForFutures(); if (m_DataStorage.IsNotNull()) { m_DataStorage->RemoveNodeEvent.RemoveListener( mitk::MessageDelegate1(this, &QmitkSlicesInterpolator::NodeRemoved) ); if (m_DataStorage->Exists(m_3DContourNode)) m_DataStorage->Remove(m_3DContourNode); if (m_DataStorage->Exists(m_InterpolatedSurfaceNode)) m_DataStorage->Remove(m_InterpolatedSurfaceNode); } // remove observer m_Interpolator->RemoveObserver(InterpolationAbortedObserverTag); m_Interpolator->RemoveObserver(InterpolationInfoChangedObserverTag); m_SurfaceInterpolator->RemoveObserver(SurfaceInterpolationInfoChangedObserverTag); m_SurfaceInterpolator->UnsetSelectedImage(); delete m_Timer; } /** External enableization... */ void QmitkSlicesInterpolator::setEnabled(bool enable) { QWidget::setEnabled(enable); // Set the gui elements of the different interpolation modi enabled if (enable) { if (m_2DInterpolationEnabled) { this->Show2DInterpolationControls(true); m_Interpolator->Activate2DInterpolation(true); } else if (m_3DInterpolationEnabled) { this->Show3DInterpolationControls(true); this->Show3DInterpolationResult(true); } } // Set all gui elements of the interpolation disabled else { this->HideAllInterpolationControls(); this->Show3DInterpolationResult(false); } } void QmitkSlicesInterpolator::On2DInterpolationEnabled(bool status) { OnInterpolationActivated(status); m_Interpolator->Activate2DInterpolation(status); } void QmitkSlicesInterpolator::On3DInterpolationEnabled(bool status) { On3DInterpolationActivated(status); } void QmitkSlicesInterpolator::OnInterpolationDisabled(bool status) { if (status) { OnInterpolationActivated(!status); On3DInterpolationActivated(!status); this->Show3DInterpolationResult(false); } } void QmitkSlicesInterpolator::HideAllInterpolationControls() { this->Show2DInterpolationControls(false); this->Show3DInterpolationControls(false); } void QmitkSlicesInterpolator::Show2DInterpolationControls(bool show) { m_BtnApply2D->setVisible(show); m_BtnApplyForAllSlices2D->setVisible(show); } void QmitkSlicesInterpolator::Show3DInterpolationControls(bool show) { m_BtnApply3D->setVisible(show); // T28261 // m_BtnSuggestPlane->setVisible(show); m_ChkShowPositionNodes->setVisible(show); m_BtnReinit3DInterpolation->setVisible(show); } void QmitkSlicesInterpolator::OnInterpolationMethodChanged(int index) { switch (index) { case 0: // Disabled m_GroupBoxEnableExclusiveInterpolationMode->setTitle("Interpolation"); this->HideAllInterpolationControls(); this->OnInterpolationActivated(false); this->On3DInterpolationActivated(false); this->Show3DInterpolationResult(false); m_Interpolator->Activate2DInterpolation(false); break; case 1: // 2D m_GroupBoxEnableExclusiveInterpolationMode->setTitle("Interpolation (Enabled)"); this->HideAllInterpolationControls(); this->Show2DInterpolationControls(true); this->OnInterpolationActivated(true); this->On3DInterpolationActivated(false); + this->Show3DInterpolationResult(false); m_Interpolator->Activate2DInterpolation(true); break; case 2: // 3D m_GroupBoxEnableExclusiveInterpolationMode->setTitle("Interpolation (Enabled)"); this->HideAllInterpolationControls(); this->Show3DInterpolationControls(true); this->OnInterpolationActivated(false); this->On3DInterpolationActivated(true); m_Interpolator->Activate2DInterpolation(false); break; default: MITK_ERROR << "Unknown interpolation method!"; m_CmbInterpolation->setCurrentIndex(0); break; } } void QmitkSlicesInterpolator::OnShowMarkers(bool state) { mitk::DataStorage::SetOfObjects::ConstPointer allContourMarkers = m_DataStorage->GetSubset(mitk::NodePredicateProperty::New("isContourMarker", mitk::BoolProperty::New(true))); for (mitk::DataStorage::SetOfObjects::ConstIterator it = allContourMarkers->Begin(); it != allContourMarkers->End(); ++it) { it->Value()->SetProperty("helper object", mitk::BoolProperty::New(!state)); } } void QmitkSlicesInterpolator::OnToolManagerWorkingDataModified() { this->ClearSegmentationObservers(); if (m_ToolManager->GetWorkingData(0) != nullptr) { m_Segmentation = dynamic_cast(m_ToolManager->GetWorkingData(0)->GetData()); auto labelSetImage = dynamic_cast(m_ToolManager->GetWorkingData(0)->GetData()); m_BtnReinit3DInterpolation->setEnabled(true); try { if (m_SegmentationObserverTags.find(labelSetImage) == m_SegmentationObserverTags.end()) { auto command2 = itk::MemberCommand::New(); command2->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnModifyLabelChanged); auto workingImage = dynamic_cast(m_ToolManager->GetWorkingData(0)->GetData()); m_SegmentationObserverTags[workingImage] = workingImage->AddObserver(itk::ModifiedEvent(), command2); } } catch (const std::exception& e) { MITK_ERROR << "Error casting node data to LabelSetImage\n"; } } else { // If no workingdata is set, remove the interpolation feedback this->GetDataStorage()->Remove(m_FeedbackNode); m_FeedbackNode->SetData(nullptr); this->GetDataStorage()->Remove(m_3DContourNode); m_3DContourNode->SetData(nullptr); this->GetDataStorage()->Remove(m_InterpolatedSurfaceNode); m_InterpolatedSurfaceNode->SetData(nullptr); m_BtnReinit3DInterpolation->setEnabled(false); m_CmbInterpolation->setCurrentIndex(0); return; } // Updating the current selected segmentation for the 3D interpolation this->SetCurrentContourListID(); if (m_2DInterpolationEnabled) { OnInterpolationActivated(true); // re-initialize if needed } } void QmitkSlicesInterpolator::OnToolManagerReferenceDataModified() { } void QmitkSlicesInterpolator::OnTimeChanged(itk::Object *sender, const itk::EventObject &e) { - // Check if we really have a GeometryTimeEvent - if (!dynamic_cast(&e)) + if (!dynamic_cast(&e)) + { return; + } - mitk::SliceNavigationController *slicer = dynamic_cast(sender); - Q_ASSERT(slicer); + const auto* timeNavigationController = dynamic_cast(sender); + if (nullptr == timeNavigationController) + { + return; + } - const auto timePoint = slicer->GetSelectedTimePoint(); - m_TimePoints[slicer] = timePoint; + m_TimePoint = timeNavigationController->GetSelectedTimePoint(); if (m_Watcher.isRunning()) m_Watcher.waitForFinished(); - if (timePoint != m_SurfaceInterpolator->GetCurrentTimePoint()) + if (m_TimePoint != m_SurfaceInterpolator->GetCurrentTimePoint()) { - m_SurfaceInterpolator->SetCurrentTimePoint(timePoint); + m_SurfaceInterpolator->SetCurrentTimePoint(m_TimePoint); if (m_3DInterpolationEnabled) { m_3DContourNode->SetData(nullptr); m_InterpolatedSurfaceNode->SetData(nullptr); } m_SurfaceInterpolator->Modified(); } - if (m_LastSNC == slicer) + if (nullptr == m_LastSNC) + { + return; + } + + if (TranslateAndInterpolateChangedSlice(m_LastSNC->GetCreatedWorldGeometry())) { - slicer->SendSlice(); // will trigger a new interpolation + m_LastSNC->GetRenderer()->RequestUpdate(); } } void QmitkSlicesInterpolator::OnSliceChanged(itk::Object *sender, const itk::EventObject &e) { - // Check whether we really have a GeometrySliceEvent - if (!dynamic_cast(&e)) + if (!dynamic_cast(&e)) + { return; + } - mitk::SliceNavigationController *slicer = dynamic_cast(sender); + auto sliceNavigationController = dynamic_cast(sender); + if (nullptr == sliceNavigationController) + { + return; + } if(m_2DInterpolationEnabled) { this->On2DInterpolationEnabled(m_2DInterpolationEnabled); - } - if (TranslateAndInterpolateChangedSlice(e, slicer)) + } + + if (TranslateAndInterpolateChangedSlice(e, sliceNavigationController)) { - slicer->GetRenderer()->RequestUpdate(); + sliceNavigationController->GetRenderer()->RequestUpdate(); } } -bool QmitkSlicesInterpolator::TranslateAndInterpolateChangedSlice(const itk::EventObject &e, - mitk::SliceNavigationController *slicer) +bool QmitkSlicesInterpolator::TranslateAndInterpolateChangedSlice(const itk::EventObject& e, + mitk::SliceNavigationController* sliceNavigationController) +{ + const mitk::SliceNavigationController::GeometrySliceEvent* event = + dynamic_cast(&e); + + mitk::TimeGeometry* timeGeometry = event->GetTimeGeometry(); + m_LastSNC = sliceNavigationController; + + return this->TranslateAndInterpolateChangedSlice(timeGeometry); +} + +bool QmitkSlicesInterpolator::TranslateAndInterpolateChangedSlice(const mitk::TimeGeometry* timeGeometry) { if (!m_2DInterpolationEnabled) + { return false; + } - try + if (nullptr == timeGeometry) { - const mitk::SliceNavigationController::GeometrySliceEvent &event = - dynamic_cast(e); + return false; + } - mitk::TimeGeometry *tsg = event.GetTimeGeometry(); - if (tsg && m_TimePoints.contains(slicer) && tsg->IsValidTimePoint(m_TimePoints[slicer])) - { - mitk::SlicedGeometry3D *slicedGeometry = - dynamic_cast(tsg->GetGeometryForTimePoint(m_TimePoints[slicer]).GetPointer()); + if (!timeGeometry->IsValidTimePoint(m_TimePoint)) + { + return false; + } - if (slicedGeometry) - { - m_LastSNC = slicer; - mitk::PlaneGeometry *plane = - dynamic_cast(slicedGeometry->GetPlaneGeometry(event.GetPos())); - if (plane) - { - Interpolate(plane, m_TimePoints[slicer], slicer); - } - return true; - } - } + mitk::SlicedGeometry3D* slicedGeometry = + dynamic_cast(timeGeometry->GetGeometryForTimePoint(m_TimePoint).GetPointer()); + if (nullptr == slicedGeometry) + { + return false; } - catch (const std::bad_cast &) + + mitk::PlaneGeometry* plane = dynamic_cast(slicedGeometry->GetPlaneGeometry(m_LastSNC->GetStepper()->GetPos())); + if (nullptr == plane) { - return false; // so what + return false; } - return false; + this->Interpolate(plane); + return true; } void QmitkSlicesInterpolator::OnLayerChanged() { auto* workingNode = m_ToolManager->GetWorkingData(0); if (workingNode != nullptr) { m_3DContourNode->SetData(nullptr); this->Show3DInterpolationResult(false); } if (m_3DInterpolationEnabled) { m_SurfaceInterpolator->Modified(); } if (m_2DInterpolationEnabled) { m_FeedbackNode->SetData(nullptr); this->OnInterpolationActivated(true); m_LastSNC->SendSlice(); } mitk::RenderingManager::GetInstance()->RequestUpdateAll(); this->UpdateVisibleSuggestion(); } -void QmitkSlicesInterpolator::Interpolate(mitk::PlaneGeometry *plane, - mitk::TimePointType timePoint, - mitk::SliceNavigationController *slicer) +void QmitkSlicesInterpolator::Interpolate(mitk::PlaneGeometry *plane) { - if (m_ToolManager) + if (nullptr == m_ToolManager) { - mitk::DataNode *node = m_ToolManager->GetWorkingData(0); - if (node) - { - m_Segmentation = dynamic_cast(node->GetData()); + return; + } - if (m_Segmentation) - { - if (!m_Segmentation->GetTimeGeometry()->IsValidTimePoint(timePoint)) - { - MITK_WARN << "Cannot interpolate segmentation. Passed time point is not within the time bounds of WorkingImage. Time point: " << timePoint; - return; - } - const auto timeStep = m_Segmentation->GetTimeGeometry()->TimePointToTimeStep(timePoint); + mitk::DataNode* node = m_ToolManager->GetWorkingData(0); + if (nullptr == node) + { + return; + } + + m_Segmentation = dynamic_cast(node->GetData()); + if (nullptr == m_Segmentation) + { + return; + } + + if (!m_Segmentation->GetTimeGeometry()->IsValidTimePoint(m_TimePoint)) + { + MITK_WARN << "Cannot interpolate WorkingImage. Passed time point is not within the time bounds of WorkingImage. " + "Time point: " + << m_TimePoint; + return; + } - int clickedSliceDimension = -1; - int clickedSliceIndex = -1; + const auto timeStep = m_Segmentation->GetTimeGeometry()->TimePointToTimeStep(m_TimePoint); - // calculate real slice position, i.e. slice of the image - mitk::SegTool2D::DetermineAffectedImageSlice(m_Segmentation, plane, clickedSliceDimension, clickedSliceIndex); + int clickedSliceDimension = -1; + int clickedSliceIndex = -1; - mitk::Image::Pointer interpolation = - m_Interpolator->Interpolate(clickedSliceDimension, clickedSliceIndex, plane, timeStep); - m_FeedbackNode->SetData(interpolation); + // calculate real slice position, i.e. slice of the image + mitk::SegTool2D::DetermineAffectedImageSlice(m_Segmentation, plane, clickedSliceDimension, clickedSliceIndex); - // maybe just have a variable that stores the active label color. - if (m_ToolManager) - { - auto* workingNode = m_ToolManager->GetWorkingData(0); - if (workingNode != nullptr) - { - auto* activeLabel = dynamic_cast(workingNode->GetData())->GetActiveLabelSet()->GetActiveLabel(); - if (nullptr != activeLabel) - { - auto activeColor = activeLabel->GetColor(); - m_FeedbackNode->SetProperty("color", mitk::ColorProperty::New(activeColor)); - } - } - } + mitk::Image::Pointer interpolation = + m_Interpolator->Interpolate(clickedSliceDimension, clickedSliceIndex, plane, timeStep); + m_FeedbackNode->SetData(interpolation); - m_LastSNC = slicer; - m_LastSliceIndex = clickedSliceIndex; + // maybe just have a variable that stores the active label color. + if (m_ToolManager) + { + auto* workingNode = m_ToolManager->GetWorkingData(0); + if (workingNode != nullptr) + { + auto* activeLabel = dynamic_cast(workingNode->GetData())->GetActiveLabelSet()->GetActiveLabel(); + if (nullptr != activeLabel) + { + auto activeColor = activeLabel->GetColor(); + m_FeedbackNode->SetProperty("color", mitk::ColorProperty::New(activeColor)); } } } + + m_LastSliceIndex = clickedSliceIndex; } void QmitkSlicesInterpolator::OnSurfaceInterpolationFinished() { mitk::Surface::Pointer interpolatedSurface = m_SurfaceInterpolator->GetInterpolationResult(); mitk::DataNode *workingNode = m_ToolManager->GetWorkingData(0); mitk::PlaneGeometry::Pointer slicingPlane = mitk::PlaneGeometry::New(); mitk::Vector3D slicingPlaneNormalVector; FillVector3D(slicingPlaneNormalVector,0.0,1.0,0.0); mitk::Point3D origin; FillVector3D(origin, 0.0, 0.0, 0.0); slicingPlane->InitializePlane(origin, slicingPlaneNormalVector); if (interpolatedSurface.IsNotNull() && workingNode) { m_BtnApply3D->setEnabled(true); // T28261 // m_BtnSuggestPlane->setEnabled(true); m_InterpolatedSurfaceNode->SetData(interpolatedSurface); m_3DContourNode->SetData(m_SurfaceInterpolator->GetContoursAsSurface()); this->Show3DInterpolationResult(true); if (!m_DataStorage->Exists(m_InterpolatedSurfaceNode)) { m_DataStorage->Add(m_InterpolatedSurfaceNode); } } else if (interpolatedSurface.IsNull()) { m_BtnApply3D->setEnabled(false); // T28261 // m_BtnSuggestPlane->setEnabled(false); if (m_DataStorage->Exists(m_InterpolatedSurfaceNode)) { this->Show3DInterpolationResult(false); } } m_BtnReinit3DInterpolation->setEnabled(true); - for (auto* slicer : m_ControllerToTimeObserverTag.keys()) + for (auto* slicer : m_ControllerToSliceObserverTag.keys()) { slicer->GetRenderer()->RequestUpdate(); } m_SurfaceInterpolator->ReinitializeInterpolation(); } void QmitkSlicesInterpolator::OnAcceptInterpolationClicked() { auto* workingNode = m_ToolManager->GetWorkingData(0); auto* planeGeometry = m_LastSNC->GetCurrentPlaneGeometry(); auto* interpolatedPreview = dynamic_cast(m_FeedbackNode->GetData()); if (nullptr == workingNode || nullptr == interpolatedPreview) return; auto* segmentationImage = dynamic_cast(workingNode->GetData()); if (nullptr == segmentationImage) return; - const auto timePoint = m_LastSNC->GetSelectedTimePoint(); - if (!segmentationImage->GetTimeGeometry()->IsValidTimePoint(timePoint)) + if (!segmentationImage->GetTimeGeometry()->IsValidTimePoint(m_TimePoint)) { - MITK_WARN << "Cannot accept interpolation. Time point selected by SliceNavigationController is not within the time bounds of segmentation. Time point: " << timePoint; + MITK_WARN << "Cannot accept interpolation. Time point selected by SliceNavigationController is not within the " + "time bounds of segmentation. Time point: " + << m_TimePoint; return; } - const auto timeStep = segmentationImage->GetTimeGeometry()->TimePointToTimeStep(timePoint); + + const auto timeStep = segmentationImage->GetTimeGeometry()->TimePointToTimeStep(m_TimePoint); auto interpolatedSlice = mitk::SegTool2D::GetAffectedImageSliceAs2DImage(planeGeometry, segmentationImage, timeStep)->Clone(); auto labelSet = segmentationImage->GetActiveLabelSet(); auto activeValue = labelSet->GetActiveLabel()->GetValue(); mitk::TransferLabelContentAtTimeStep( interpolatedPreview, interpolatedSlice, labelSet, timeStep, 0, mitk::LabelSetImage::UnlabeledValue, false, { {0, mitk::LabelSetImage::UnlabeledValue}, {1, activeValue} } ); mitk::SegTool2D::WriteBackSegmentationResult(workingNode, planeGeometry, interpolatedSlice, timeStep); m_FeedbackNode->SetData(nullptr); } void QmitkSlicesInterpolator::AcceptAllInterpolations(mitk::SliceNavigationController *slicer) { /* * What exactly is done here: * 1. We create an empty diff image for the current segmentation * 2. All interpolated slices are written into the diff image * 3. Then the diffimage is applied to the original segmentation */ if (m_Segmentation) { mitk::Image::Pointer segmentation3D = m_Segmentation; unsigned int timeStep = 0; - const auto timePoint = slicer->GetSelectedTimePoint(); if (4 == m_Segmentation->GetDimension()) { const auto* geometry = m_Segmentation->GetTimeGeometry(); - if (!geometry->IsValidTimePoint(timePoint)) + if (!geometry->IsValidTimePoint(m_TimePoint)) { - MITK_WARN << "Cannot accept all interpolations. Time point selected by passed SliceNavigationController is not within the time bounds of segmentation. Time point: " << timePoint; + MITK_WARN << "Cannot accept all interpolations. Time point selected by passed SliceNavigationController is not " + "within the time bounds of segmentation. Time point: " + << m_TimePoint; return; } mitk::Image::Pointer activeLabelImage; try { auto labelSetImage = dynamic_cast(m_Segmentation); activeLabelImage = labelSetImage->CreateLabelMask(labelSetImage->GetActiveLabelSet()->GetActiveLabel()->GetValue(), true, 0); } catch (const std::exception& e) { MITK_ERROR << e.what() << " | NO LABELSETIMAGE IN WORKING NODE\n"; } m_Interpolator->SetSegmentationVolume(activeLabelImage); - timeStep = geometry->TimePointToTimeStep(timePoint); + timeStep = geometry->TimePointToTimeStep(m_TimePoint); auto timeSelector = mitk::ImageTimeSelector::New(); timeSelector->SetInput(m_Segmentation); timeSelector->SetTimeNr(timeStep); timeSelector->Update(); segmentation3D = timeSelector->GetOutput(); } // Create an empty diff image for the undo operation auto diffImage = mitk::Image::New(); diffImage->Initialize(segmentation3D); // Create scope for ImageWriteAccessor so that the accessor is destroyed right after use { mitk::ImageWriteAccessor accessor(diffImage); // Set all pixels to zero auto pixelType = mitk::MakeScalarPixelType(); // For legacy purpose support former pixel type of segmentations (before multilabel) if (itk::IOComponentEnum::UCHAR == m_Segmentation->GetImageDescriptor()->GetChannelDescriptor().GetPixelType().GetComponentType()) pixelType = mitk::MakeScalarPixelType(); memset(accessor.GetData(), 0, pixelType.GetSize() * diffImage->GetDimension(0) * diffImage->GetDimension(1) * diffImage->GetDimension(2)); } // Since we need to shift the plane it must be clone so that the original plane isn't altered auto slicedGeometry = m_Segmentation->GetSlicedGeometry(); auto planeGeometry = slicer->GetCurrentPlaneGeometry()->Clone(); int sliceDimension = -1; int sliceIndex = -1; mitk::SegTool2D::DetermineAffectedImageSlice(m_Segmentation, planeGeometry, sliceDimension, sliceIndex); const auto numSlices = m_Segmentation->GetDimension(sliceDimension); mitk::ProgressBar::GetInstance()->AddStepsToDo(numSlices); std::atomic_uint totalChangedSlices; // Reuse interpolation algorithm instance for each slice to cache boundary calculations auto algorithm = mitk::ShapeBasedInterpolationAlgorithm::New(); // Distribute slice interpolations to multiple threads const auto numThreads = std::min(std::thread::hardware_concurrency(), numSlices); // const auto numThreads = 1; std::vector> sliceIndices(numThreads); for (std::remove_const_t sliceIndex = 0; sliceIndex < numSlices; ++sliceIndex) sliceIndices[sliceIndex % numThreads].push_back(sliceIndex); std::vector threads; threads.reserve(numThreads); // This lambda will be executed by the threads auto interpolate = [=, &interpolator = m_Interpolator, &totalChangedSlices](unsigned int threadIndex) { auto clonedPlaneGeometry = planeGeometry->Clone(); auto origin = clonedPlaneGeometry->GetOrigin(); // Go through the sliced indices for (auto sliceIndex : sliceIndices[threadIndex]) { slicedGeometry->WorldToIndex(origin, origin); origin[sliceDimension] = sliceIndex; slicedGeometry->IndexToWorld(origin, origin); clonedPlaneGeometry->SetOrigin(origin); auto interpolation = interpolator->Interpolate(sliceDimension, sliceIndex, clonedPlaneGeometry, timeStep, algorithm); if (interpolation.IsNotNull()) { // Setting up the reslicing pipeline which allows us to write the interpolation results back into the image volume auto reslicer = vtkSmartPointer::New(); // Set overwrite mode to true to write back to the image volume reslicer->SetInputSlice(interpolation->GetSliceData()->GetVtkImageAccessor(interpolation)->GetVtkImageData()); reslicer->SetOverwriteMode(true); reslicer->Modified(); auto diffSliceWriter = mitk::ExtractSliceFilter::New(reslicer); diffSliceWriter->SetInput(diffImage); diffSliceWriter->SetTimeStep(0); diffSliceWriter->SetWorldGeometry(clonedPlaneGeometry); diffSliceWriter->SetVtkOutputRequest(true); diffSliceWriter->SetResliceTransformByGeometry(diffImage->GetTimeGeometry()->GetGeometryForTimeStep(0)); diffSliceWriter->Modified(); diffSliceWriter->Update(); ++totalChangedSlices; } mitk::ProgressBar::GetInstance()->Progress(); } }; m_Interpolator->EnableSliceImageCache(); // Do the interpolation here. for (size_t threadIndex = 0; threadIndex < numThreads; ++threadIndex) { interpolate(threadIndex); } m_Interpolator->DisableSliceImageCache(); const mitk::Label::PixelType newDestinationLabel = dynamic_cast(m_Segmentation)->GetActiveLabelSet()->GetActiveLabel()->GetValue(); // Do and Undo Operations if (totalChangedSlices > 0) { // Create do/undo operations auto* doOp = new mitk::ApplyDiffImageOperation(mitk::OpTEST, m_Segmentation, diffImage, timeStep); auto* undoOp = new mitk::ApplyDiffImageOperation(mitk::OpTEST, m_Segmentation, diffImage, timeStep); undoOp->SetFactor(-1.0); auto comment = "Confirm all interpolations (" + std::to_string(totalChangedSlices) + ")"; auto* undoStackItem = new mitk::OperationEvent(mitk::DiffImageApplier::GetInstanceForUndo(), doOp, undoOp, comment); mitk::OperationEvent::IncCurrGroupEventId(); mitk::OperationEvent::IncCurrObjectEventId(); mitk::UndoController::GetCurrentUndoModel()->SetOperationEvent(undoStackItem); mitk::DiffImageApplier::GetInstanceForUndo()->SetDestinationLabel(newDestinationLabel); // Apply the changes to the original image mitk::DiffImageApplier::GetInstanceForUndo()->ExecuteOperation(doOp); } m_FeedbackNode->SetData(nullptr); } mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkSlicesInterpolator::FinishInterpolation(mitk::SliceNavigationController *slicer) { // this redirect is for calling from outside if (slicer == nullptr) OnAcceptAllInterpolationsClicked(); else AcceptAllInterpolations(slicer); } void QmitkSlicesInterpolator::OnAcceptAllInterpolationsClicked() { QMenu orientationPopup(this); - for (auto it = m_ActionToSlicer.begin(); it != m_ActionToSlicer.end(); ++it) + for (auto it = m_ActionToSlicerMap.begin(); it != m_ActionToSlicerMap.end(); ++it) + { orientationPopup.addAction(it->first); + } connect(&orientationPopup, SIGNAL(triggered(QAction *)), this, SLOT(OnAcceptAllPopupActivated(QAction *))); orientationPopup.exec(QCursor::pos()); } void QmitkSlicesInterpolator::OnAccept3DInterpolationClicked() { auto referenceImage = GetData(m_ToolManager->GetReferenceData(0)); auto* segmentationDataNode = m_ToolManager->GetWorkingData(0); auto labelSetImage = dynamic_cast(segmentationDataNode->GetData()); auto activeLabelColor = labelSetImage->GetActiveLabelSet()->GetActiveLabel()->GetColor(); std::string activeLabelName = labelSetImage->GetActiveLabelSet()->GetActiveLabel()->GetName(); auto segmentation = GetData(segmentationDataNode); if (referenceImage.IsNull() || segmentation.IsNull()) return; const auto* segmentationGeometry = segmentation->GetTimeGeometry(); - const auto timePoint = m_LastSNC->GetSelectedTimePoint(); - if (!referenceImage->GetTimeGeometry()->IsValidTimePoint(timePoint) || - !segmentationGeometry->IsValidTimePoint(timePoint)) + if (!referenceImage->GetTimeGeometry()->IsValidTimePoint(m_TimePoint) || + !segmentationGeometry->IsValidTimePoint(m_TimePoint)) { MITK_WARN << "Cannot accept interpolation. Current time point is not within the time bounds of the patient image and segmentation."; return; } auto interpolatedSurface = GetData(m_InterpolatedSurfaceNode); if (interpolatedSurface.IsNull()) return; auto surfaceToImageFilter = mitk::SurfaceToImageFilter::New(); surfaceToImageFilter->SetImage(referenceImage); surfaceToImageFilter->SetMakeOutputBinary(true); surfaceToImageFilter->SetUShortBinaryPixelType(itk::IOComponentEnum::USHORT == segmentation->GetPixelType().GetComponentType()); surfaceToImageFilter->SetInput(interpolatedSurface); surfaceToImageFilter->Update(); mitk::Image::Pointer interpolatedSegmentation = surfaceToImageFilter->GetOutput(); - auto timeStep = segmentationGeometry->TimePointToTimeStep(timePoint); + auto timeStep = segmentationGeometry->TimePointToTimeStep(m_TimePoint); const mitk::Label::PixelType newDestinationLabel = labelSetImage->GetActiveLabelSet()->GetActiveLabel()->GetValue(); TransferLabelContentAtTimeStep( interpolatedSegmentation, labelSetImage, labelSetImage->GetActiveLabelSet(), timeStep, 0, 0, false, {{1, newDestinationLabel}}, mitk::MultiLabelSegmentation::MergeStyle::Merge, mitk::MultiLabelSegmentation::OverwriteStyle::RegardLocks); - // m_CmbInterpolation->setCurrentIndex(0); this->Show3DInterpolationResult(false); std::string name = segmentationDataNode->GetName() + " 3D-interpolation - " + activeLabelName; mitk::TimeBounds timeBounds; if (1 < interpolatedSurface->GetTimeSteps()) { name += "_t" + std::to_string(timeStep); auto* polyData = vtkPolyData::New(); polyData->DeepCopy(interpolatedSurface->GetVtkPolyData(timeStep)); auto surface = mitk::Surface::New(); surface->SetVtkPolyData(polyData); interpolatedSurface = surface; timeBounds = segmentationGeometry->GetTimeBounds(timeStep); } else { timeBounds = segmentationGeometry->GetTimeBounds(0); } auto* surfaceGeometry = static_cast(interpolatedSurface->GetTimeGeometry()); surfaceGeometry->SetFirstTimePoint(timeBounds[0]); surfaceGeometry->SetStepDuration(timeBounds[1] - timeBounds[0]); // Typical file formats for surfaces do not save any time-related information. As a workaround at least for MITK scene files, we have the // possibility to seralize this information as properties. interpolatedSurface->SetProperty("ProportionalTimeGeometry.FirstTimePoint", mitk::FloatProperty::New(surfaceGeometry->GetFirstTimePoint())); interpolatedSurface->SetProperty("ProportionalTimeGeometry.StepDuration", mitk::FloatProperty::New(surfaceGeometry->GetStepDuration())); auto interpolatedSurfaceDataNode = mitk::DataNode::New(); interpolatedSurfaceDataNode->SetData(interpolatedSurface); interpolatedSurfaceDataNode->SetName(name); interpolatedSurfaceDataNode->SetOpacity(0.7f); interpolatedSurfaceDataNode->SetColor(activeLabelColor); m_DataStorage->Add(interpolatedSurfaceDataNode, segmentationDataNode); } - void QmitkSlicesInterpolator::OnReinit3DInterpolation() { // Step 1. Load from the isContourPlaneGeometry nodes the contourNodes. mitk::NodePredicateProperty::Pointer pred = mitk::NodePredicateProperty::New("isContourPlaneGeometry", mitk::BoolProperty::New(true)); mitk::DataStorage::SetOfObjects::ConstPointer contourNodes = m_DataStorage->GetDerivations(m_ToolManager->GetWorkingData(0), pred); if (contourNodes->Size() != 0) { std::vector contourPlanes; std::vector contourList; if (m_ToolManager->GetWorkingData(0) != nullptr) { try { auto labelSetImage = dynamic_cast(m_ToolManager->GetWorkingData(0)->GetData()); auto activeLayerID = labelSetImage->GetActiveLayer(); - const auto timePoint = m_LastSNC->GetSelectedTimePoint(); - if (!labelSetImage->GetTimeGeometry()->IsValidTimePoint(timePoint)) + if (!labelSetImage->GetTimeGeometry()->IsValidTimePoint(m_TimePoint)) { MITK_ERROR << "Invalid time point requested for interpolation pipeline."; return; } // Adding layer, label and timeStep information for the contourNodes. for (auto it = contourNodes->Begin(); it != contourNodes->End(); ++it) { auto contourNode = it->Value(); auto layerID = dynamic_cast(contourNode->GetProperty("layerID"))->GetValue(); auto labelID = dynamic_cast(contourNode->GetProperty("labelID"))->GetValue(); auto timeStep = dynamic_cast(contourNode->GetProperty("timeStep"))->GetValue(); auto px = dynamic_cast(contourNode->GetProperty("px"))->GetValue(); auto py = dynamic_cast(contourNode->GetProperty("py"))->GetValue(); auto pz = dynamic_cast(contourNode->GetProperty("pz"))->GetValue(); // auto layerImage = labelSetImage->GetLayerImage(layerID); auto planeGeometry = dynamic_cast(contourNode->GetData())->GetPlaneGeometry(); labelSetImage->SetActiveLayer(layerID); auto sliceImage = ExtractSliceFromImage(labelSetImage, planeGeometry, timeStep); labelSetImage->SetActiveLayer(activeLayerID); mitk::ImageToContourFilter::Pointer contourExtractor = mitk::ImageToContourFilter::New(); contourExtractor->SetInput(sliceImage); contourExtractor->SetContourValue(labelID); contourExtractor->Update(); mitk::Surface::Pointer contour = contourExtractor->GetOutput(); if (contour->GetVtkPolyData()->GetNumberOfPoints() == 0) continue; vtkSmartPointer intArray = vtkSmartPointer::New(); intArray->InsertNextValue(labelID); intArray->InsertNextValue(layerID); intArray->InsertNextValue(timeStep); contour->GetVtkPolyData()->GetFieldData()->AddArray(intArray); vtkSmartPointer doubleArray = vtkSmartPointer::New(); doubleArray->InsertNextValue(px); doubleArray->InsertNextValue(py); doubleArray->InsertNextValue(pz); contour->GetVtkPolyData()->GetFieldData()->AddArray(doubleArray); contour->DisconnectPipeline(); contourList.push_back(contour); contourPlanes.push_back(planeGeometry); } labelSetImage->SetActiveLayer(activeLayerID); // size_t activeLayer = labelSetImage->GetActiveLayer(); for (size_t l = 0; l < labelSetImage->GetNumberOfLayers(); ++l) { this->OnAddLabelSetConnection(l); } // labelSetImage->SetActiveLayer(activeLayer); m_SurfaceInterpolator->CompleteReinitialization(contourList, contourPlanes); } catch(const std::exception& e) { MITK_ERROR << "Exception thrown casting toolmanager working data to labelsetImage"; } } } else { m_BtnApply3D->setEnabled(false); QMessageBox errorInfo; errorInfo.setWindowTitle("Reinitialize surface interpolation"); errorInfo.setIcon(QMessageBox::Information); errorInfo.setText("No contours available for the selected segmentation!"); errorInfo.exec(); } } void QmitkSlicesInterpolator::OnAcceptAllPopupActivated(QAction *action) { try { - auto iter = m_ActionToSlicer.find(action); - if (iter != m_ActionToSlicer.end()) + auto iter = m_ActionToSlicerMap.find(action); + if (iter != m_ActionToSlicerMap.end()) { mitk::SliceNavigationController *slicer = iter->second; - AcceptAllInterpolations(slicer); + this->AcceptAllInterpolations(slicer); } } catch (...) { /* Showing message box with possible memory error */ QMessageBox errorInfo; errorInfo.setWindowTitle("Interpolation Process"); errorInfo.setIcon(QMessageBox::Critical); errorInfo.setText("An error occurred during interpolation. Possible cause: Not enough memory!"); errorInfo.exec(); // additional error message on std::cerr std::cerr << "Ill construction in " __FILE__ " l. " << __LINE__ << std::endl; } } void QmitkSlicesInterpolator::OnInterpolationActivated(bool on) { m_2DInterpolationEnabled = on; try { if (m_DataStorage.IsNotNull()) { if (on && !m_DataStorage->Exists(m_FeedbackNode)) { m_DataStorage->Add(m_FeedbackNode); } } } catch (...) { // don't care (double add/remove) } if (m_ToolManager) { mitk::DataNode *workingNode = m_ToolManager->GetWorkingData(0); mitk::DataNode *referenceNode = m_ToolManager->GetReferenceData(0); QWidget::setEnabled(workingNode != nullptr); m_BtnApply2D->setEnabled(on); m_FeedbackNode->SetVisibility(on); if (!on) { mitk::RenderingManager::GetInstance()->RequestUpdateAll(); return; } if (workingNode) { auto labelSetImage = dynamic_cast(workingNode->GetData()); if (nullptr == labelSetImage) { MITK_ERROR << "NO LABELSETIMAGE IN WORKING NODE\n"; mitk::RenderingManager::GetInstance()->RequestUpdateAll(); return; } auto* activeLabel = labelSetImage->GetActiveLabelSet()->GetActiveLabel(); auto* segmentation = dynamic_cast(workingNode->GetData()); if (nullptr != activeLabel && nullptr != segmentation) { auto activeLabelImage = labelSetImage->CreateLabelMask(activeLabel->GetValue(), true, 0); m_Interpolator->SetSegmentationVolume(activeLabelImage); if (referenceNode) { mitk::Image *referenceImage = dynamic_cast(referenceNode->GetData()); m_Interpolator->SetReferenceVolume(referenceImage); // may be nullptr } } } } this->UpdateVisibleSuggestion(); } void QmitkSlicesInterpolator::Run3DInterpolation() { m_SurfaceInterpolator->Interpolate(); } void QmitkSlicesInterpolator::StartUpdateInterpolationTimer() { m_Timer->start(500); } void QmitkSlicesInterpolator::StopUpdateInterpolationTimer() { if(m_ToolManager) { auto* workingNode = m_ToolManager->GetWorkingData(0); auto activeColor = dynamic_cast(workingNode->GetData())->GetActiveLabelSet()->GetActiveLabel()->GetColor(); m_InterpolatedSurfaceNode->SetProperty("color", mitk::ColorProperty::New(activeColor)); m_3DContourNode->SetProperty("color", mitk::ColorProperty::New(activeColor)); } m_Timer->stop(); } void QmitkSlicesInterpolator::ChangeSurfaceColor() { float currentColor[3]; m_InterpolatedSurfaceNode->GetColor(currentColor); m_InterpolatedSurfaceNode->SetProperty("color", mitk::ColorProperty::New(SURFACE_COLOR_RGB)); m_InterpolatedSurfaceNode->Update(); mitk::RenderingManager::GetInstance()->RequestUpdateAll(mitk::RenderingManager::REQUEST_UPDATE_3DWINDOWS); } void QmitkSlicesInterpolator::PrepareInputsFor3DInterpolation() { if (m_DataStorage.IsNotNull() && m_ToolManager && m_3DInterpolationEnabled) { auto *workingNode = m_ToolManager->GetWorkingData(0); if (workingNode != nullptr) { int ret = QMessageBox::Yes; if (m_SurfaceInterpolator->EstimatePortionOfNeededMemory() > 0.5) { QMessageBox msgBox; msgBox.setText("Due to short handed system memory the 3D interpolation may be very slow!"); msgBox.setInformativeText("Are you sure you want to activate the 3D interpolation?"); msgBox.setStandardButtons(QMessageBox::No | QMessageBox::Yes); ret = msgBox.exec(); } auto labelSetImage = dynamic_cast(workingNode->GetData()); auto activeLabel = labelSetImage->GetActiveLabelSet()->GetActiveLabel()->GetValue(); m_SurfaceInterpolator->AddActiveLabelContoursForInterpolation(activeLabel); if (m_Watcher.isRunning()) m_Watcher.waitForFinished(); if (ret == QMessageBox::Yes) { // Maybe set the segmentation node here m_Future = QtConcurrent::run(this, &QmitkSlicesInterpolator::Run3DInterpolation); m_Watcher.setFuture(m_Future); } else { m_CmbInterpolation->setCurrentIndex(0); } } else { QWidget::setEnabled(false); m_ChkShowPositionNodes->setEnabled(m_3DInterpolationEnabled); } } if (!m_3DInterpolationEnabled) { this->Show3DInterpolationResult(false); m_BtnApply3D->setEnabled(m_3DInterpolationEnabled); // T28261 // m_BtnSuggestPlane->setEnabled(m_3DInterpolationEnabled); } mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkSlicesInterpolator::On3DInterpolationActivated(bool on) { m_3DInterpolationEnabled = on; try { // this->PrepareInputsFor3DInterpolation(); m_SurfaceInterpolator->Modified(); } catch (...) { MITK_ERROR << "Error with 3D surface interpolation!"; } mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkSlicesInterpolator::EnableInterpolation(bool on) { // only to be called from the outside world // just a redirection to OnInterpolationActivated OnInterpolationActivated(on); } void QmitkSlicesInterpolator::Enable3DInterpolation(bool on) { // only to be called from the outside world // just a redirection to OnInterpolationActivated this->On3DInterpolationActivated(on); } void QmitkSlicesInterpolator::UpdateVisibleSuggestion() { mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkSlicesInterpolator::OnInterpolationInfoChanged(const itk::EventObject & /*e*/) { // something (e.g. undo) changed the interpolation info, we should refresh our display this->UpdateVisibleSuggestion(); } void QmitkSlicesInterpolator::OnInterpolationAborted(const itk::EventObject& /*e*/) { m_CmbInterpolation->setCurrentIndex(0); m_FeedbackNode->SetData(nullptr); } void QmitkSlicesInterpolator::OnSurfaceInterpolationInfoChanged(const itk::EventObject & /*e*/) { if (m_Watcher.isRunning()) m_Watcher.waitForFinished(); if (m_3DInterpolationEnabled) { m_3DContourNode->SetData(nullptr); m_InterpolatedSurfaceNode->SetData(nullptr); auto* workingNode = m_ToolManager->GetWorkingData(0); if (workingNode == nullptr) return; auto* labelSetImage = dynamic_cast(workingNode->GetData()); auto* label = labelSetImage->GetActiveLabelSet()->GetActiveLabel(); if (label == nullptr) return; m_SurfaceInterpolator->AddActiveLabelContoursForInterpolation(label->GetValue()); m_Future = QtConcurrent::run(this, &QmitkSlicesInterpolator::Run3DInterpolation); m_Watcher.setFuture(m_Future); } } void QmitkSlicesInterpolator::SetCurrentContourListID() { // New ContourList = hide current interpolation Show3DInterpolationResult(false); if (m_DataStorage.IsNotNull() && m_ToolManager && m_LastSNC) { mitk::DataNode *workingNode = m_ToolManager->GetWorkingData(0); try{ auto labelSetImage = dynamic_cast(workingNode->GetData()); for (size_t layerID = 0; layerID < labelSetImage->GetNumberOfLayers(); ++layerID) { this->OnAddLabelSetConnection(layerID); } } catch (std::exception &e) { MITK_ERROR << e.what() << "\n"; } if (workingNode) { QWidget::setEnabled(true); - const auto timePoint = m_LastSNC->GetSelectedTimePoint(); // In case the time is not valid use 0 to access the time geometry of the working node unsigned int time_position = 0; - if (!workingNode->GetData()->GetTimeGeometry()->IsValidTimePoint(timePoint)) + if (!workingNode->GetData()->GetTimeGeometry()->IsValidTimePoint(m_TimePoint)) { - MITK_WARN << "Cannot accept interpolation. Time point selected by SliceNavigationController is not within the time bounds of WorkingImage. Time point: " << timePoint; + MITK_WARN << "Cannot accept interpolation. Time point selected by SliceNavigationController is not within the time bounds of WorkingImage. Time point: " << m_TimePoint; return; } // Sets up the surface interpolator to accept - time_position = workingNode->GetData()->GetTimeGeometry()->TimePointToTimeStep(timePoint); + time_position = workingNode->GetData()->GetTimeGeometry()->TimePointToTimeStep(m_TimePoint); mitk::Vector3D spacing = workingNode->GetData()->GetGeometry(time_position)->GetSpacing(); double minSpacing = 100; double maxSpacing = 0; for (int i = 0; i < 3; i++) { if (spacing[i] < minSpacing) { minSpacing = spacing[i]; } if (spacing[i] > maxSpacing) { maxSpacing = spacing[i]; } } m_SurfaceInterpolator->SetMaxSpacing(maxSpacing); m_SurfaceInterpolator->SetMinSpacing(minSpacing); m_SurfaceInterpolator->SetDistanceImageVolume(50000); mitk::Image::Pointer segmentationImage; segmentationImage = dynamic_cast(workingNode->GetData()); m_SurfaceInterpolator->SetCurrentInterpolationSession(segmentationImage); - m_SurfaceInterpolator->SetCurrentTimePoint(timePoint); + m_SurfaceInterpolator->SetCurrentTimePoint(m_TimePoint); } else { QWidget::setEnabled(false); } } } void QmitkSlicesInterpolator::Show3DInterpolationResult(bool status) { if (m_InterpolatedSurfaceNode.IsNotNull()) m_InterpolatedSurfaceNode->SetVisibility(status); if (m_3DContourNode.IsNotNull()) { auto allRenderWindows = mitk::BaseRenderer::GetAll3DRenderWindows(); for (auto mapit = allRenderWindows.begin(); mapit != allRenderWindows.end(); ++mapit) { m_3DContourNode->SetVisibility(status, mapit->second); } } mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkSlicesInterpolator::OnActiveLabelChanged(mitk::Label::PixelType) { m_3DContourNode->SetData(nullptr); m_FeedbackNode->SetData(nullptr); m_InterpolatedSurfaceNode->SetData(nullptr); if (m_Watcher.isRunning()) m_Watcher.waitForFinished(); if (m_3DInterpolationEnabled) { m_SurfaceInterpolator->Modified(); } if (m_2DInterpolationEnabled) { m_FeedbackNode->SetData(nullptr); this->OnInterpolationActivated(true); m_LastSNC->SendSlice(); } mitk::RenderingManager::GetInstance()->RequestUpdateAll(); this->UpdateVisibleSuggestion(); } void QmitkSlicesInterpolator::CheckSupportedImageDimension() { if (m_ToolManager->GetWorkingData(0)) { m_Segmentation = dynamic_cast(m_ToolManager->GetWorkingData(0)->GetData()); if (m_3DInterpolationEnabled && m_Segmentation && ((m_Segmentation->GetDimension() != 3) || (m_Segmentation->GetDimension() != 4)) ) { QMessageBox info; info.setWindowTitle("3D Interpolation Process"); info.setIcon(QMessageBox::Information); info.setText("3D Interpolation is only supported for 3D/4D images at the moment!"); info.exec(); m_CmbInterpolation->setCurrentIndex(0); } } } void QmitkSlicesInterpolator::OnSliceNavigationControllerDeleted(const itk::Object *sender, const itk::EventObject & /*e*/) { // Don't know how to avoid const_cast here?! mitk::SliceNavigationController *slicer = dynamic_cast(const_cast(sender)); if (slicer) { - m_ControllerToTimeObserverTag.remove(slicer); m_ControllerToSliceObserverTag.remove(slicer); m_ControllerToDeleteObserverTag.remove(slicer); } } void QmitkSlicesInterpolator::WaitForFutures() { if (m_Watcher.isRunning()) { m_Watcher.waitForFinished(); } if (m_PlaneWatcher.isRunning()) { m_PlaneWatcher.waitForFinished(); } } void QmitkSlicesInterpolator::NodeRemoved(const mitk::DataNode* node) { if ((m_ToolManager && m_ToolManager->GetWorkingData(0) == node) || node == m_3DContourNode || node == m_FeedbackNode || node == m_InterpolatedSurfaceNode) { WaitForFutures(); } } void QmitkSlicesInterpolator::OnAddLabelSetConnection(unsigned int layerID) { if (m_ToolManager->GetWorkingData(0) != nullptr) { try { auto workingImage = dynamic_cast(m_ToolManager->GetWorkingData(0)->GetData()); auto labelSet = workingImage->GetLabelSet(layerID); labelSet->RemoveLabelEvent += mitk::MessageDelegate1( this, &QmitkSlicesInterpolator::OnRemoveLabel); labelSet->ActiveLabelEvent += mitk::MessageDelegate1( this, &QmitkSlicesInterpolator::OnActiveLabelChanged); workingImage->AfterChangeLayerEvent += mitk::MessageDelegate( this, &QmitkSlicesInterpolator::OnLayerChanged); m_SurfaceInterpolator->AddLabelSetConnection(layerID); } catch(const std::exception& e) { MITK_ERROR << e.what() << '\n'; } } } void QmitkSlicesInterpolator::OnAddLabelSetConnection() { if (m_ToolManager->GetWorkingData(0) != nullptr) { try { auto workingImage = dynamic_cast(m_ToolManager->GetWorkingData(0)->GetData()); workingImage->GetActiveLabelSet()->RemoveLabelEvent += mitk::MessageDelegate1( this, &QmitkSlicesInterpolator::OnRemoveLabel); workingImage->GetActiveLabelSet()->ActiveLabelEvent += mitk::MessageDelegate1( this, &QmitkSlicesInterpolator::OnActiveLabelChanged); workingImage->AfterChangeLayerEvent += mitk::MessageDelegate( this, &QmitkSlicesInterpolator::OnLayerChanged); m_SurfaceInterpolator->AddLabelSetConnection(); } catch(const std::exception& e) { MITK_ERROR << e.what() << '\n'; } } } void QmitkSlicesInterpolator::OnRemoveLabelSetConnection(mitk::LabelSetImage* labelSetImage, unsigned int layerID) { size_t previousLayerID = labelSetImage->GetActiveLayer(); labelSetImage->SetActiveLayer(layerID); labelSetImage->GetActiveLabelSet()->RemoveLabelEvent -= mitk::MessageDelegate1( this, &QmitkSlicesInterpolator::OnRemoveLabel); labelSetImage->GetActiveLabelSet()->ActiveLabelEvent -= mitk::MessageDelegate1( this, &QmitkSlicesInterpolator::OnActiveLabelChanged); labelSetImage->AfterChangeLayerEvent -= mitk::MessageDelegate( this, &QmitkSlicesInterpolator::OnLayerChanged); m_SurfaceInterpolator->RemoveLabelSetConnection(labelSetImage, layerID); labelSetImage->SetActiveLayer(previousLayerID); } void QmitkSlicesInterpolator::OnRemoveLabelSetConnection() { if (m_ToolManager->GetWorkingData(0) != nullptr) { try { auto workingImage = dynamic_cast(m_ToolManager->GetWorkingData(0)->GetData()); workingImage->GetActiveLabelSet()->RemoveLabelEvent -= mitk::MessageDelegate1( this, &QmitkSlicesInterpolator::OnRemoveLabel); workingImage->GetActiveLabelSet()->ActiveLabelEvent -= mitk::MessageDelegate1( this, &QmitkSlicesInterpolator::OnActiveLabelChanged); workingImage->AfterChangeLayerEvent -= mitk::MessageDelegate( this, &QmitkSlicesInterpolator::OnLayerChanged); } catch(const std::exception& e) { MITK_ERROR << e.what() << '\n'; } } } void QmitkSlicesInterpolator::OnRemoveLabel(mitk::Label::PixelType /*removedLabelValue*/) { if (m_ToolManager->GetWorkingData(0) != nullptr) { try { auto labelSetImage = dynamic_cast(m_ToolManager->GetWorkingData(0)->GetData()); auto currentLayerID = labelSetImage->GetActiveLayer(); auto numTimeSteps = labelSetImage->GetTimeGeometry()->CountTimeSteps(); for (size_t t = 0; t < numTimeSteps; ++t) { m_SurfaceInterpolator->RemoveContours(m_PreviousActiveLabelValue,t,currentLayerID); } } catch(const std::exception& e) { MITK_ERROR << "Bad cast error for labelSetImage"; } } } void QmitkSlicesInterpolator::OnModifyLabelChanged(const itk::Object *caller, const itk::EventObject & /*event*/) { auto *tempImage = dynamic_cast(const_cast(caller) ) ; if( tempImage == nullptr) { MITK_ERROR << "Unable to cast caller to LabelSetImage."; return; } ModifyLabelActionTrigerred actionTriggered = ModifyLabelActionTrigerred::Null; if(m_ToolManager->GetWorkingData(0) != nullptr) { auto labelSetImage = dynamic_cast(m_ToolManager->GetWorkingData(0)->GetData()); if (labelSetImage == tempImage) { - const auto timePoint = m_LastSNC->GetSelectedTimePoint(); - if (!labelSetImage->GetTimeGeometry()->IsValidTimePoint(timePoint)) + if (!labelSetImage->GetTimeGeometry()->IsValidTimePoint(m_TimePoint)) { MITK_ERROR << "Invalid time point requested for interpolation pipeline."; return; } - auto timeStep = labelSetImage->GetTimeGeometry()->TimePointToTimeStep(timePoint); + auto timeStep = labelSetImage->GetTimeGeometry()->TimePointToTimeStep(m_TimePoint); auto numLayersInCurrentSegmentation = m_SurfaceInterpolator->GetNumberOfLayersInCurrentSegmentation(); // This handles the add layer or remove layer operation. if (labelSetImage->GetNumberOfLayers() != numLayersInCurrentSegmentation) { bool addLayer = (labelSetImage->GetNumberOfLayers() == (numLayersInCurrentSegmentation +1) ); bool removeLayer = (labelSetImage->GetNumberOfLayers() == (numLayersInCurrentSegmentation - 1) ); m_SurfaceInterpolator->SetNumberOfLayersInCurrentSegmentation(labelSetImage->GetNumberOfLayers()); if (addLayer) { m_SurfaceInterpolator->OnAddLayer(); this->OnAddLabelSetConnection(); } if (removeLayer) { m_SurfaceInterpolator->OnRemoveLayer(); } return; } // Get the pixels present in the image. // This portion of the code deals with the merge and erase labels operations. auto imageDimension = labelSetImage->GetDimension(); if (imageDimension == 4) { actionTriggered = ModifyLabelProcessing<4>(labelSetImage, m_SurfaceInterpolator, timeStep); } else { actionTriggered = ModifyLabelProcessing<3>(labelSetImage, m_SurfaceInterpolator, timeStep); } if (actionTriggered == ModifyLabelActionTrigerred::Erase) { m_InterpolatedSurfaceNode->SetData(nullptr); } auto currentLayerID = labelSetImage->GetActiveLayer(); if (actionTriggered == ModifyLabelActionTrigerred::Merge) { this->MergeContours(timeStep, currentLayerID); m_SurfaceInterpolator->Modified(); } } } } void QmitkSlicesInterpolator::MergeContours(unsigned int timeStep, unsigned int layerID) { auto* contours = m_SurfaceInterpolator->GetContours(timeStep, layerID); if (nullptr == contours) return; std::this_thread::sleep_for(std::chrono::milliseconds(1000)); for (size_t i = 0; i < contours->size(); ++i) { for (size_t j = i+1; j < contours->size(); ++j) { // And Labels are the same and Layers are the same. bool areContoursCoplanar = AreContoursCoplanar((*contours)[i], (*contours)[j]); if ( areContoursCoplanar && ((*contours)[i].LabelValue == (*contours)[j].LabelValue) ) { // Update the contour by re-extracting the slice from the corresponding plane. mitk::Image::Pointer slice = ExtractSliceFromImage(m_Segmentation, (*contours)[i].Plane, timeStep); mitk::ImageToContourFilter::Pointer contourExtractor = mitk::ImageToContourFilter::New(); contourExtractor->SetInput(slice); contourExtractor->SetContourValue((*contours)[i].LabelValue); contourExtractor->Update(); mitk::Surface::Pointer contour = contourExtractor->GetOutput(); (*contours)[i].Contour = contour; // Update the interior point of the contour (*contours)[i].ContourPoint = m_SurfaceInterpolator->ComputeInteriorPointOfContour((*contours)[i],dynamic_cast(m_Segmentation)); // Setting the contour polygon data to an empty vtkPolyData, // as source label is empty after merge operation. (*contours)[j].Contour->SetVtkPolyData(vtkSmartPointer::New()); } } } auto segmentationNode = m_SurfaceInterpolator->GetSegmentationImageNode(); if (segmentationNode == nullptr) { MITK_ERROR << "segmentation Image Node not found\n"; } auto isContourPlaneGeometry = mitk::NodePredicateProperty::New("isContourPlaneGeometry", mitk::BoolProperty::New(true)); mitk::DataStorage::SetOfObjects::ConstPointer contourNodes = m_DataStorage->GetDerivations(segmentationNode, isContourPlaneGeometry); // Remove empty contour nodes. auto isContourEmpty = [] (const mitk::SurfaceInterpolationController::ContourPositionInformation& contour) { return (contour.Contour->GetVtkPolyData()->GetNumberOfPoints() == 0); }; auto it = std::remove_if((*contours).begin(), (*contours).end(), isContourEmpty); (*contours).erase(it, (*contours).end()); } void QmitkSlicesInterpolator::ClearSegmentationObservers() { auto dataIter = m_SegmentationObserverTags.begin(); while (dataIter != m_SegmentationObserverTags.end()) { auto labelSetImage = (*dataIter).first; labelSetImage->RemoveObserver((*dataIter).second); for (size_t layerID = 0; layerID < labelSetImage->GetNumberOfLayers(); ++layerID) { this->OnRemoveLabelSetConnection(labelSetImage, layerID); } ++dataIter; } m_SegmentationObserverTags.clear(); } diff --git a/Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.h b/Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.h index 9ab6eec6d3..5344f253a6 100644 --- a/Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.h +++ b/Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.h @@ -1,426 +1,428 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkSlicesInterpolator_h #define QmitkSlicesInterpolator_h #include "mitkDataNode.h" #include "mitkDataStorage.h" #include "mitkSegmentationInterpolationController.h" -#include "mitkSliceNavigationController.h" #include "mitkSurfaceInterpolationController.h" #include "mitkToolManager.h" #include #include "mitkFeatureBasedEdgeDetectionFilter.h" #include "mitkPointCloudScoringFilter.h" #include #include #include #include #include #include #include #include "mitkVtkRepresentationProperty.h" #include "vtkProperty.h" // For running 3D interpolation in background #include #include #include #include namespace mitk { class PlaneGeometry; class SliceNavigationController; + class TimeNavigationController; } class QPushButton; class QmitkRenderWindow; enum ModifyLabelActionTrigerred { Null, Erase, Merge }; /** \brief GUI for slices interpolation. \ingroup ToolManagerEtAl \ingroup Widgets \sa QmitkInteractiveSegmentation \sa mitk::SegmentationInterpolation While mitk::SegmentationInterpolation does the bookkeeping of interpolation (keeping track of which slices contain how much segmentation) and the algorithmic work, QmitkSlicesInterpolator is responsible to watch the GUI, to notice, which slice is currently visible. It triggers generation of interpolation suggestions and also triggers acception of suggestions. \todo show/hide feedback on demand Last contributor: $Author: maleike $ */ class MITKSEGMENTATIONUI_EXPORT QmitkSlicesInterpolator : public QWidget { Q_OBJECT public: QmitkSlicesInterpolator(QWidget *parent = nullptr, const char *name = nullptr); /** To be called once before real use. */ void Initialize(mitk::ToolManager *toolManager, const QList& windows); /** * @brief * */ void Uninitialize(); ~QmitkSlicesInterpolator() override; /** * @brief Set the Data Storage object * * @param storage */ void SetDataStorage(mitk::DataStorage::Pointer storage); /** * @brief Get the Data Storage object * * @return mitk::DataStorage* */ mitk::DataStorage *GetDataStorage(); /** Just public because it is called by itk::Commands. You should not need to call this. */ void OnToolManagerWorkingDataModified(); /** Just public because it is called by itk::Commands. You should not need to call this. */ void OnToolManagerReferenceDataModified(); /** * @brief Reacts to the time changed event. * * @param sender */ void OnTimeChanged(itk::Object *sender, const itk::EventObject &); /** * @brief Reacts to the slice changed event * * @param sender */ void OnSliceChanged(itk::Object *sender, const itk::EventObject &); void OnSliceNavigationControllerDeleted(const itk::Object *sender, const itk::EventObject &); /** Just public because it is called by itk::Commands. You should not need to call this. */ void OnInterpolationInfoChanged(const itk::EventObject &); /** Just public because it is called by itk::Commands. You should not need to call this. */ void OnInterpolationAborted(const itk::EventObject &); /** Just public because it is called by itk::Commands. You should not need to call this. */ void OnSurfaceInterpolationInfoChanged(const itk::EventObject &); private: /** * @brief Set the visibility of the 3d interpolation */ void Show3DInterpolationResult(bool); /** * @brief Function that reacts to a change in the activeLabel of the working segmentation image. * */ void OnActiveLabelChanged(mitk::Label::PixelType); /** * @brief Function that reacts to a change in the layer. * */ void OnLayerChanged(); /** * @brief Function that handles label removal from the segmentation image. * */ void OnRemoveLabel(mitk::Label::PixelType removedLabelValue); /** * @brief Function that to changes in the segmentation image. It handles the layer removal, addition, label erasure, * */ void OnModifyLabelChanged(const itk::Object *caller, const itk::EventObject & /*event*/); /** * @brief Add the necessary subscribers to the label set image, for UI responsiveness. * It deals with remove label, change active label, layer changes and change in the label. * */ void OnAddLabelSetConnection(); /** * @brief Add the necessary subscribers to the current LabelSetImage at the layer input, for UI responsiveness. * It deals with remove label, change active label, layer changes and change in the label. * * @param layerID */ void OnAddLabelSetConnection(unsigned int layerID); /** * @brief Remove the subscribers for the different events to the segmentation image. * */ void OnRemoveLabelSetConnection(); /** * @brief Merge contours for the current layerID and current timeStep. * * @param timeStep * @param layerID */ void MergeContours(unsigned int timeStep, unsigned int layerID); /** * @brief Prepare Inputs for 3D Interpolation. * */ void PrepareInputsFor3DInterpolation(); signals: void SignalRememberContourPositions(bool); void SignalShowMarkerNodes(bool); public slots: virtual void setEnabled(bool); /** Call this from the outside to enable/disable interpolation */ void EnableInterpolation(bool); void Enable3DInterpolation(bool); /** Call this from the outside to accept all interpolations */ void FinishInterpolation(mitk::SliceNavigationController *slicer = nullptr); protected slots: /** Reaction to button clicks. */ void OnAcceptInterpolationClicked(); /* Opens popup to ask about which orientation should be interpolated */ void OnAcceptAllInterpolationsClicked(); /* Reaction to button clicks */ void OnAccept3DInterpolationClicked(); /** * @brief Reaction to reinit 3D Interpolation. Re-reads the plane geometries of the image * that should have generated the * */ void OnReinit3DInterpolation(); /* * Will trigger interpolation for all slices in given orientation (called from popup menu of * OnAcceptAllInterpolationsClicked) */ void OnAcceptAllPopupActivated(QAction *action); /** Called on activation/deactivation */ void OnInterpolationActivated(bool); void On3DInterpolationActivated(bool); void OnInterpolationMethodChanged(int index); // Enhancement for 3D interpolation void On2DInterpolationEnabled(bool); void On3DInterpolationEnabled(bool); void OnInterpolationDisabled(bool); void OnShowMarkers(bool); void Run3DInterpolation(); /** * @brief Function triggers when the surface interpolation thread completes running. * It is responsible for retrieving the data, rendering it in the active color label, * storing the surface information in the feedback node. * */ void OnSurfaceInterpolationFinished(); void StartUpdateInterpolationTimer(); void StopUpdateInterpolationTimer(); void ChangeSurfaceColor(); /** * @brief Removes all observers to the labelSetImage at the layerID specified. * Is used when changing the segmentation image. * * @param labelSetImage * @param layerID */ void OnRemoveLabelSetConnection(mitk::LabelSetImage* labelSetImage, unsigned int layerID); protected: - const std::map createActionToSlicer(const QList& windows); - std::map m_ActionToSlicer; + + typedef std::map ActionToSliceDimensionMapType; + const ActionToSliceDimensionMapType CreateActionToSlicer(const QList& windows); + ActionToSliceDimensionMapType m_ActionToSlicerMap; void AcceptAllInterpolations(mitk::SliceNavigationController *slicer); /** Retrieves the currently selected PlaneGeometry from a SlicedGeometry3D that is generated by a SliceNavigationController and calls Interpolate to further process this PlaneGeometry into an interpolation. \param e is a actually a mitk::SliceNavigationController::GeometrySliceEvent, sent by a SliceNavigationController \param slicer the SliceNavigationController */ - bool TranslateAndInterpolateChangedSlice(const itk::EventObject &e, mitk::SliceNavigationController *slicer); + bool TranslateAndInterpolateChangedSlice(const itk::EventObject &e, + mitk::SliceNavigationController *sliceNavigationController); + bool TranslateAndInterpolateChangedSlice(const mitk::TimeGeometry* timeGeometry); /** Given a PlaneGeometry, this method figures out which slice of the first working image (of the associated ToolManager) should be interpolated. The actual work is then done by our SegmentationInterpolation object. */ - void Interpolate(mitk::PlaneGeometry *plane, mitk::TimePointType timePoint, mitk::SliceNavigationController *slicer); - - // void InterpolateSurface(); + void Interpolate(mitk::PlaneGeometry *plane); /** Called internally to update the interpolation suggestion. Finds out about the focused render window and requests an interpolation. */ void UpdateVisibleSuggestion(); void SetCurrentContourListID(); private: void InitializeWindow(QmitkRenderWindow* window); void HideAllInterpolationControls(); void Show2DInterpolationControls(bool show); void Show3DInterpolationControls(bool show); void CheckSupportedImageDimension(); void WaitForFutures(); void NodeRemoved(const mitk::DataNode* node); void ClearSegmentationObservers(); mitk::SegmentationInterpolationController::Pointer m_Interpolator; mitk::SurfaceInterpolationController::Pointer m_SurfaceInterpolator; mitk::FeatureBasedEdgeDetectionFilter::Pointer m_EdgeDetector; mitk::PointCloudScoringFilter::Pointer m_PointScorer; mitk::ToolManager::Pointer m_ToolManager; bool m_Initialized; - QHash m_ControllerToTimeObserverTag; + unsigned int m_ControllerToTimeObserverTag; QHash m_ControllerToSliceObserverTag; QHash m_ControllerToDeleteObserverTag; std::map m_SegmentationObserverTags; unsigned int InterpolationInfoChangedObserverTag; unsigned int SurfaceInterpolationInfoChangedObserverTag; unsigned int InterpolationAbortedObserverTag; QGroupBox *m_GroupBoxEnableExclusiveInterpolationMode; QComboBox *m_CmbInterpolation; QPushButton *m_BtnApply2D; QPushButton *m_BtnApplyForAllSlices2D; QPushButton *m_BtnApply3D; // T28261 // QPushButton *m_BtnSuggestPlane; QCheckBox *m_ChkShowPositionNodes; QPushButton *m_BtnReinit3DInterpolation; mitk::DataNode::Pointer m_FeedbackNode; mitk::DataNode::Pointer m_InterpolatedSurfaceNode; mitk::DataNode::Pointer m_3DContourNode; mitk::Image *m_Segmentation; mitk::SliceNavigationController *m_LastSNC; unsigned int m_LastSliceIndex; - QHash m_TimePoints; + mitk::TimePointType m_TimePoint; bool m_2DInterpolationEnabled; bool m_3DInterpolationEnabled; unsigned int m_numTimesLabelSetConnectionAdded; mitk::DataStorage::Pointer m_DataStorage; QFuture m_Future; QFutureWatcher m_Watcher; QFuture m_ModifyFuture; QFutureWatcher m_ModifyWatcher; QTimer *m_Timer; QFuture m_PlaneFuture; QFutureWatcher m_PlaneWatcher; mitk::Label::PixelType m_PreviousActiveLabelValue; mitk::Label::PixelType m_CurrentActiveLabelValue; unsigned int m_PreviousLayerIndex; unsigned int m_CurrentLayerIndex; bool m_FirstRun; }; #endif diff --git a/Modules/SegmentationUI/Qmitk/QmitknnUNetToolGUI.cpp b/Modules/SegmentationUI/Qmitk/QmitknnUNetToolGUI.cpp index 1182ce51b0..6e449c5a4e 100644 --- a/Modules/SegmentationUI/Qmitk/QmitknnUNetToolGUI.cpp +++ b/Modules/SegmentationUI/Qmitk/QmitknnUNetToolGUI.cpp @@ -1,1196 +1,1197 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitknnUNetToolGUI.h" #include "mitkProcessExecutor.h" #include "mitknnUnetTool.h" +#include #include #include #include #include #include #include #include #include #include #include #include #include MITK_TOOL_GUI_MACRO(MITKSEGMENTATIONUI_EXPORT, QmitknnUNetToolGUI, "") QmitknnUNetToolGUI::QmitknnUNetToolGUI() : QmitkMultiLabelSegWithPreviewToolGUIBase(), m_SuperclassEnableConfirmSegBtnFnc(m_EnableConfirmSegBtnFnc) { // Nvidia-smi command returning zero doesn't always imply lack of GPUs. // Pytorch uses its own libraries to communicate to the GPUs. Hence, only a warning can be given. if (m_GpuLoader.GetGPUCount() == 0) { std::string warning = "WARNING: No GPUs were detected on your machine. The nnUNet tool might not work."; this->ShowErrorMessage(warning); } // define predicates for multi modal data selection combobox auto imageType = mitk::TNodePredicateDataType::New(); auto labelSetImageType = mitk::NodePredicateNot::New(mitk::TNodePredicateDataType::New()); m_MultiModalPredicate = mitk::NodePredicateAnd::New(imageType, labelSetImageType).GetPointer(); m_nnUNetThread = new QThread(this); m_Worker = new nnUNetDownloadWorker; m_Worker->moveToThread(m_nnUNetThread); m_EnableConfirmSegBtnFnc = [this](bool enabled) { return !m_FirstPreviewComputation ? m_SuperclassEnableConfirmSegBtnFnc(enabled) : false; }; } QmitknnUNetToolGUI::~QmitknnUNetToolGUI() { m_nnUNetThread->quit(); m_nnUNetThread->wait(); } void QmitknnUNetToolGUI::ConnectNewTool(mitk::SegWithPreviewTool *newTool) { Superclass::ConnectNewTool(newTool); newTool->IsTimePointChangeAwareOff(); m_FirstPreviewComputation = true; } void QmitknnUNetToolGUI::InitializeUI(QBoxLayout *mainLayout) { m_Controls.setupUi(this); #ifndef _WIN32 m_Controls.pythonEnvComboBox->addItem("/usr/bin"); #endif m_Controls.pythonEnvComboBox->addItem("Select"); AutoParsePythonPaths(); SetGPUInfo(); connect(m_Controls.previewButton, SIGNAL(clicked()), this, SLOT(OnPreviewRequested())); connect(m_Controls.modeldirectoryBox, SIGNAL(directoryChanged(const QString &)), this, SLOT(OnDirectoryChanged(const QString &))); connect( m_Controls.modelBox, SIGNAL(currentTextChanged(const QString &)), this, SLOT(OnModelChanged(const QString &))); connect(m_Controls.taskBox, SIGNAL(currentTextChanged(const QString &)), this, SLOT(OnTaskChanged(const QString &))); connect( m_Controls.plannerBox, SIGNAL(currentTextChanged(const QString &)), this, SLOT(OnTrainerChanged(const QString &))); connect(m_Controls.multiModalBox, SIGNAL(stateChanged(int)), this, SLOT(OnCheckBoxChanged(int))); connect(m_Controls.pythonEnvComboBox, #if QT_VERSION >= 0x050F00 // 5.15 SIGNAL(textActivated(const QString &)), #elif QT_VERSION >= 0x050C00 // 5.12 SIGNAL(currentTextChanged(const QString &)), #endif this, SLOT(OnPythonPathChanged(const QString &))); connect(m_Controls.refreshdirectoryBox, SIGNAL(clicked()), this, SLOT(OnRefreshPresssed())); connect(m_Controls.clearCacheButton, SIGNAL(clicked()), this, SLOT(OnClearCachePressed())); connect(m_Controls.startDownloadButton, SIGNAL(clicked()), this, SLOT(OnDownloadModel())); connect(m_Controls.stopDownloadButton, SIGNAL(clicked()), this, SLOT(OnStopDownload())); // Qthreads qRegisterMetaType(); qRegisterMetaType(); connect(this, &QmitknnUNetToolGUI::Operate, m_Worker, &nnUNetDownloadWorker::DoWork); connect(m_Worker, &nnUNetDownloadWorker::Exit, this, &QmitknnUNetToolGUI::OnDownloadWorkerExit); connect(m_nnUNetThread, &QThread::finished, m_Worker, &QObject::deleteLater); m_Controls.multiModalValueLabel->setStyleSheet("font-weight: bold; color: white"); m_Controls.multiModalValueLabel->setVisible(false); m_Controls.requiredModalitiesLabel->setVisible(false); m_Controls.stopDownloadButton->setVisible(false); m_Controls.previewButton->setEnabled(false); QIcon refreshIcon = QmitkStyleManager::ThemeIcon(QStringLiteral(":/org_mitk_icons/icons/awesome/scalable/actions/view-refresh.svg")); m_Controls.refreshdirectoryBox->setIcon(refreshIcon); QIcon dirIcon = QmitkStyleManager::ThemeIcon(QStringLiteral(":/org_mitk_icons/icons/awesome/scalable/actions/document-open.svg")); m_Controls.modeldirectoryBox->setIcon(dirIcon); m_Controls.refreshdirectoryBox->setEnabled(true); QIcon stopIcon = QmitkStyleManager::ThemeIcon(QStringLiteral(":/org_mitk_icons/icons/awesome/scalable/status/dialog-error.svg")); m_Controls.stopDownloadButton->setIcon(stopIcon); m_Controls.statusLabel->setTextFormat(Qt::RichText); if (m_GpuLoader.GetGPUCount() != 0) { WriteStatusMessage(QString("STATUS: Welcome to nnUNet. " + QString::number(m_GpuLoader.GetGPUCount()) + " GPUs were detected.")); } else { WriteErrorMessage(QString("STATUS: Welcome to nnUNet. " + QString::number(m_GpuLoader.GetGPUCount()) + " GPUs were detected.")); } mainLayout->addLayout(m_Controls.verticalLayout); Superclass::InitializeUI(mainLayout); m_UI_ROWS = m_Controls.advancedSettingsLayout->rowCount(); // Must do. Row count is correct only here. this->DisableEverything(); QString lastSelectedPyEnv = m_Settings.value("nnUNet/LastPythonPath").toString(); m_Controls.pythonEnvComboBox->setCurrentText(lastSelectedPyEnv); } void QmitknnUNetToolGUI::EnableWidgets(bool enabled) { Superclass::EnableWidgets(enabled); } void QmitknnUNetToolGUI::ClearAllModalities() { m_Controls.multiModalBox->setChecked(false); this->ClearAllModalLabels(); } void QmitknnUNetToolGUI::ClearAllModalLabels() { for (auto modalLabel : m_ModalLabels) { delete modalLabel; // delete the layout item m_ModalLabels.pop_back(); } m_Controls.advancedSettingsLayout->update(); } void QmitknnUNetToolGUI::DisableEverything() { m_Controls.modeldirectoryBox->setEnabled(false); m_Controls.refreshdirectoryBox->setEnabled(false); m_Controls.previewButton->setEnabled(false); m_Controls.multiModalValueLabel->setVisible(false); m_Controls.multiModalBox->setEnabled(false); this->ClearAllComboBoxes(); this->ClearAllModalities(); } void QmitknnUNetToolGUI::ClearAllComboBoxes() { m_Controls.modelBox->clear(); m_Controls.taskBox->clear(); m_Controls.foldBox->clear(); m_Controls.trainerBox->clear(); m_Controls.plannerBox->clear(); for (auto &layout : m_EnsembleParams) { layout->modelBox->clear(); layout->trainerBox->clear(); layout->plannerBox->clear(); layout->foldBox->clear(); } } std::vector QmitknnUNetToolGUI::FetchMultiModalImagesFromUI() { std::vector modals; if (m_Controls.multiModalBox->isChecked() && !m_Modalities.empty()) { std::set nodeNames; // set container for keeping names of all nodes to check if they are added twice. for (QmitkSingleNodeSelectionWidget *modality : m_Modalities) { mitk::DataNode::Pointer node = modality->GetSelectedNode(); if (nodeNames.find(node->GetName()) == nodeNames.end()) { modals.push_back(dynamic_cast(node->GetData())); nodeNames.insert(node->GetName()); } else { throw std::runtime_error("Same modality is selected more than once. Please change your selection."); break; } } } return modals; } bool QmitknnUNetToolGUI::IsNNUNetInstalled(const QString &pythonPath) { QString fullPath = pythonPath; #ifdef _WIN32 if (!(fullPath.endsWith("Scripts", Qt::CaseInsensitive) || fullPath.endsWith("Scripts/", Qt::CaseInsensitive))) { fullPath += QDir::separator() + QString("Scripts"); } #else if (!(fullPath.endsWith("bin", Qt::CaseInsensitive) || fullPath.endsWith("bin/", Qt::CaseInsensitive))) { fullPath += QDir::separator() + QString("bin"); } #endif fullPath = fullPath.mid(fullPath.indexOf(" ") + 1); bool isExists = QFile::exists(fullPath + QDir::separator() + QString("nnUNet_predict")) && QFile::exists(fullPath + QDir::separator() + QString("python3")); return isExists; } void QmitknnUNetToolGUI::ShowErrorMessage(const std::string &message, QMessageBox::Icon icon) { this->setCursor(Qt::ArrowCursor); QMessageBox *messageBox = new QMessageBox(icon, nullptr, message.c_str()); messageBox->exec(); delete messageBox; MITK_WARN << message; } void QmitknnUNetToolGUI::WriteStatusMessage(const QString &message) { m_Controls.statusLabel->setText(message); m_Controls.statusLabel->setStyleSheet("font-weight: bold; color: white"); } void QmitknnUNetToolGUI::WriteErrorMessage(const QString &message) { m_Controls.statusLabel->setText(message); m_Controls.statusLabel->setStyleSheet("font-weight: bold; color: red"); } void QmitknnUNetToolGUI::ProcessEnsembleModelsParams(mitk::nnUNetTool::Pointer tool) { if (m_EnsembleParams[0]->modelBox->currentText() == m_EnsembleParams[1]->modelBox->currentText()) { throw std::runtime_error("Both models you have selected for ensembling are the same."); } QString taskName = m_Controls.taskBox->currentText(); bool isPPJson = m_Controls.postProcessingCheckBox->isChecked(); std::vector requestQ; QString ppDirFolderNamePart1 = "ensemble_"; QStringList ppDirFolderNameParts; for (auto &layout : m_EnsembleParams) { QStringList ppDirFolderName; QString modelName = layout->modelBox->currentText(); ppDirFolderName << modelName; ppDirFolderName << "__"; QString trainer = layout->trainerBox->currentText(); ppDirFolderName << trainer; ppDirFolderName << "__"; QString planId = layout->plannerBox->currentText(); ppDirFolderName << planId; if (!this->IsModelExists(modelName, taskName, QString(trainer + "__" + planId))) { std::string errorMsg = "The configuration " + modelName.toStdString() + " you have selected doesn't exist. Check your Results Folder again."; throw std::runtime_error(errorMsg); } std::vector testfold = FetchSelectedFoldsFromUI(layout->foldBox); mitk::ModelParams modelObject = MapToRequest(modelName, taskName, trainer, planId, testfold); requestQ.push_back(modelObject); ppDirFolderNameParts << ppDirFolderName.join(QString("")); } tool->EnsembleOn(); if (isPPJson) { QString ppJsonFilePossibility1 = QDir::cleanPath( m_ParentFolder->getResultsFolder() + QDir::separator() + "nnUNet" + QDir::separator() + "ensembles" + QDir::separator() + taskName + QDir::separator() + ppDirFolderNamePart1 + ppDirFolderNameParts.first() + "--" + ppDirFolderNameParts.last() + QDir::separator() + "postprocessing.json"); QString ppJsonFilePossibility2 = QDir::cleanPath( m_ParentFolder->getResultsFolder() + QDir::separator() + "nnUNet" + QDir::separator() + "ensembles" + QDir::separator() + taskName + QDir::separator() + ppDirFolderNamePart1 + ppDirFolderNameParts.last() + "--" + ppDirFolderNameParts.first() + QDir::separator() + "postprocessing.json"); if (QFile(ppJsonFilePossibility1).exists()) { tool->SetPostProcessingJsonDirectory(ppJsonFilePossibility1.toStdString()); const QString statusMsg = "Post Processing JSON file found: " + ppJsonFilePossibility1; this->WriteStatusMessage(statusMsg); } else if (QFile(ppJsonFilePossibility2).exists()) { tool->SetPostProcessingJsonDirectory(ppJsonFilePossibility2.toStdString()); const QString statusMsg = "Post Processing JSON file found:" + ppJsonFilePossibility2; this->WriteStatusMessage(statusMsg); } else { std::string errorMsg = "No post processing file was found for the selected ensemble combination. Continuing anyway..."; this->ShowErrorMessage(errorMsg); } } tool->m_ParamQ.clear(); tool->m_ParamQ = requestQ; } void QmitknnUNetToolGUI::ProcessModelParams(mitk::nnUNetTool::Pointer tool) { tool->EnsembleOff(); std::vector requestQ; QString modelName = m_Controls.modelBox->currentText(); QString taskName = m_Controls.taskBox->currentText(); QString trainer = m_Controls.trainerBox->currentText(); QString planId = m_Controls.plannerBox->currentText(); std::vector fetchedFolds = this->FetchSelectedFoldsFromUI(m_Controls.foldBox); mitk::ModelParams modelObject = MapToRequest(modelName, taskName, trainer, planId, fetchedFolds); requestQ.push_back(modelObject); tool->m_ParamQ.clear(); tool->m_ParamQ = requestQ; } bool QmitknnUNetToolGUI::IsModelExists(const QString &modelName, const QString &taskName, const QString &trainerPlanner) { QString modelSearchPath = QDir::cleanPath(m_ParentFolder->getResultsFolder() + QDir::separator() + "nnUNet" + QDir::separator() + modelName + QDir::separator() + taskName + QDir::separator() + trainerPlanner); if (QDir(modelSearchPath).exists()) { return true; } return false; } void QmitknnUNetToolGUI::CheckAllInCheckableComboBox(ctkCheckableComboBox *foldBox) { // Recalling all added items to check-mark it. const QAbstractItemModel *qaim = foldBox->checkableModel(); auto rows = qaim->rowCount(); for (std::remove_const_t i = 0; i < rows; ++i) { const QModelIndex mi = qaim->index(i, 0); foldBox->setCheckState(mi, Qt::Checked); } } std::pair QmitknnUNetToolGUI::ExtractTrainerPlannerFromString(QStringList trainerPlanners) { QString splitterString = "__"; QStringList trainers, planners; for (const auto &trainerPlanner : trainerPlanners) { trainers << trainerPlanner.split(splitterString, QString::SplitBehavior::SkipEmptyParts).first(); planners << trainerPlanner.split(splitterString, QString::SplitBehavior::SkipEmptyParts).last(); } trainers.removeDuplicates(); planners.removeDuplicates(); return std::make_pair(trainers, planners); } std::vector QmitknnUNetToolGUI::FetchSelectedFoldsFromUI(ctkCheckableComboBox *foldBox) { std::vector folds; if (foldBox->noneChecked()) { this->CheckAllInCheckableComboBox(foldBox); } QModelIndexList foldList = foldBox->checkedIndexes(); for (const auto &index : foldList) { QString foldQString = foldBox->itemText(index.row()); if(foldQString != "dummy_element_that_nobody_can_see") { foldQString = foldQString.split("_", QString::SplitBehavior::SkipEmptyParts).last(); folds.push_back(foldQString.toStdString()); } else { throw std::runtime_error("Folds are not recognized. Please check if your nnUNet results folder structure is legitimate"); } } return folds; } void QmitknnUNetToolGUI::UpdateCacheCountOnUI() { QString cacheText = m_CACHE_COUNT_BASE_LABEL + QString::number(m_Cache.size()); m_Controls.cacheCountLabel->setText(cacheText); } void QmitknnUNetToolGUI::AddToCache(size_t &hashKey, mitk::LabelSetImage::ConstPointer mlPreview) { nnUNetCache *newCacheObj = new nnUNetCache; newCacheObj->m_SegCache = mlPreview; m_Cache.insert(hashKey, newCacheObj); MITK_INFO << "New hash: " << hashKey << " " << newCacheObj->m_SegCache.GetPointer(); this->UpdateCacheCountOnUI(); } void QmitknnUNetToolGUI::SetGPUInfo() { std::vector specs = m_GpuLoader.GetAllGPUSpecs(); for (const QmitkGPUSpec &gpuSpec : specs) { m_Controls.gpuComboBox->addItem(QString::number(gpuSpec.id) + ": " + gpuSpec.name + " (" + gpuSpec.memory + ")"); } if (specs.empty()) { m_Controls.gpuComboBox->setEditable(true); m_Controls.gpuComboBox->addItem(QString::number(0)); m_Controls.gpuComboBox->setValidator(new QIntValidator(0, 999, this)); } } unsigned int QmitknnUNetToolGUI::FetchSelectedGPUFromUI() { QString gpuInfo = m_Controls.gpuComboBox->currentText(); if (m_GpuLoader.GetGPUCount() == 0) { return static_cast(gpuInfo.toInt()); } else { QString gpuId = gpuInfo.split(":", QString::SplitBehavior::SkipEmptyParts).first(); return static_cast(gpuId.toInt()); } } QString QmitknnUNetToolGUI::FetchResultsFolderFromEnv() { const char *pathVal = itksys::SystemTools::GetEnv("RESULTS_FOLDER"); QString retVal; if (pathVal) { retVal = QString::fromUtf8(pathVal); } else { retVal = m_Settings.value("nnUNet/LastRESULTS_FOLDERPath").toString(); } return retVal; } void QmitknnUNetToolGUI::DumpJSONfromPickle(const QString &picklePath) { const QString pickleFile = picklePath + QDir::separator() + m_PICKLE_FILENAME; const QString jsonFile = picklePath + QDir::separator() + m_MITK_EXPORT_JSON_FILENAME; if (!QFile::exists(jsonFile)) { mitk::ProcessExecutor::Pointer spExec = mitk::ProcessExecutor::New(); mitk::ProcessExecutor::ArgumentListType args; args.push_back("-c"); std::string pythonCode; // python syntax to parse plans.pkl file and export as Json file. pythonCode.append("import pickle;"); pythonCode.append("import json;"); pythonCode.append("loaded_pickle = pickle.load(open('"); pythonCode.append(pickleFile.toStdString()); pythonCode.append("','rb'));"); pythonCode.append("modal_dict = {key: loaded_pickle[key] for key in loaded_pickle.keys() if key in " "['modalities','num_modalities']};"); pythonCode.append("json.dump(modal_dict, open('"); pythonCode.append(jsonFile.toStdString()); pythonCode.append("', 'w'))"); args.push_back(pythonCode); try { spExec->Execute(m_PythonPath.toStdString(), "python3", args); } catch (const mitk::Exception &e) { MITK_ERROR << "Pickle parsing FAILED!" << e.GetDescription(); this->WriteStatusMessage( "Parsing failed in backend. Multiple Modalities will now have to be manually entered by the user."); } } } void QmitknnUNetToolGUI::ExportAvailableModelsAsJSON(const QString &resultsFolder) { const QString jsonPath = resultsFolder + QDir::separator() + m_AVAILABLE_MODELS_JSON_FILENAME; if (!QFile::exists(jsonPath)) { auto spExec = mitk::ProcessExecutor::New(); mitk::ProcessExecutor::ArgumentListType args; args.push_back("--export"); args.push_back(resultsFolder.toStdString()); try { spExec->Execute(m_PythonPath.toStdString(), "nnUNet_print_available_pretrained_models", args); } catch (const mitk::Exception &e) { MITK_ERROR << "Exporting information FAILED." << e.GetDescription(); this->WriteStatusMessage("Exporting information FAILED."); } } } void QmitknnUNetToolGUI::DisplayMultiModalInfoFromJSON(const QString &jsonPath) { std::ifstream file(jsonPath.toStdString()); if (file.is_open()) { auto jsonObj = nlohmann::json::parse(file, nullptr, false); if (jsonObj.is_discarded() || !jsonObj.is_object()) { MITK_ERROR << "Could not parse \"" << jsonPath.toStdString() << "\" as JSON object!"; return; } auto num_mods = jsonObj["num_modalities"].get(); this->ClearAllModalLabels(); if (num_mods > 1) { m_Controls.multiModalBox->setChecked(true); m_Controls.multiModalBox->setEnabled(false); m_Controls.multiModalValueLabel->setText(QString::number(num_mods)); OnModalitiesNumberChanged(num_mods); m_Controls.advancedSettingsLayout->update(); auto obj = jsonObj["modalities"]; int count = 0; for (const auto &value : obj) { QLabel *label = new QLabel(QString::fromStdString("" + value.get() + ""), this); m_ModalLabels.push_back(label); m_Controls.advancedSettingsLayout->addWidget(label, m_UI_ROWS + 1 + count, 0); count++; } m_Controls.advancedSettingsLayout->update(); } else { m_Controls.multiModalBox->setChecked(false); } } } void QmitknnUNetToolGUI::FillAvailableModelsInfoFromJSON(const QString &jsonPath) { std::ifstream file(jsonPath.toStdString()); if (file.is_open() && m_Controls.availableBox->count() < 1) { auto jsonObj = nlohmann::json::parse(file, nullptr, false); if (jsonObj.is_discarded() || !jsonObj.is_object()) { MITK_ERROR << "Could not parse \"" << jsonPath.toStdString() << "\" as JSON object!"; return; } for (const auto &obj : jsonObj.items()) { m_Controls.availableBox->addItem(QString::fromStdString(obj.key())); } } } mitk::ModelParams QmitknnUNetToolGUI::MapToRequest(const QString &modelName, const QString &taskName, const QString &trainer, const QString &planId, const std::vector &folds) { mitk::ModelParams requestObject; requestObject.model = modelName.toStdString(); requestObject.trainer = trainer.toStdString(); requestObject.planId = planId.toStdString(); requestObject.task = taskName.toStdString(); requestObject.folds = folds; mitk::nnUNetTool::Pointer tool = this->GetConnectedToolAs(); requestObject.inputName = tool->GetRefNode()->GetName(); requestObject.timeStamp = std::to_string(mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint()); return requestObject; } void QmitknnUNetToolGUI::SetComboBoxToNone(ctkCheckableComboBox* comboBox) { comboBox->clear(); comboBox->addItem("dummy_element_that_nobody_can_see"); qobject_cast(comboBox->view())->setRowHidden(0, true); // For the cosmetic purpose of showing "None" on the combobox. } /* ---------------------SLOTS---------------------------------------*/ void QmitknnUNetToolGUI::OnPreviewRequested() { mitk::nnUNetTool::Pointer tool = this->GetConnectedToolAs(); if (nullptr != tool) { QString pythonPathTextItem = ""; try { size_t hashKey(0); m_Controls.previewButton->setEnabled(false); // To prevent misclicked back2back prediction. qApp->processEvents(); tool->PredictOn(); // purposefully placed to make tool->GetMTime different than before. QString modelName = m_Controls.modelBox->currentText(); if (modelName.startsWith("ensemble", Qt::CaseInsensitive)) { this->ProcessEnsembleModelsParams(tool); } else { this->ProcessModelParams(tool); } pythonPathTextItem = m_Controls.pythonEnvComboBox->currentText(); QString pythonPath = m_PythonPath; if (!this->IsNNUNetInstalled(pythonPath)) { throw std::runtime_error("nnUNet is not detected in the selected python environment. Please select a valid " "python environment or install nnUNet."); } tool->SetPythonPath(pythonPath.toStdString()); tool->SetModelDirectory(m_ParentFolder->getResultsFolder().toStdString()); // checkboxes tool->SetMirror(m_Controls.mirrorBox->isChecked()); tool->SetMixedPrecision(m_Controls.mixedPrecisionBox->isChecked()); tool->SetNoPip(false); bool doCache = m_Controls.enableCachingCheckBox->isChecked(); // Spinboxes tool->SetGpuId(FetchSelectedGPUFromUI()); // Multi-Modal tool->MultiModalOff(); if (m_Controls.multiModalBox->isChecked()) { tool->m_OtherModalPaths.clear(); tool->m_OtherModalPaths = FetchMultiModalImagesFromUI(); tool->MultiModalOn(); } if (doCache) { hashKey = nnUNetCache::GetUniqueHash(tool->m_ParamQ); if (m_Cache.contains(hashKey)) { tool->PredictOff(); // purposefully placed to make tool->GetMTime different than before. } } if (tool->GetPredict()) { tool->m_InputBuffer = nullptr; this->WriteStatusMessage( QString("STATUS: Starting Segmentation task... This might take a while.")); tool->UpdatePreview(); if (nullptr == tool->GetOutputBuffer()) { this->SegmentationProcessFailed(); } else { this->SegmentationResultHandler(tool); if (doCache) { this->AddToCache(hashKey, tool->GetOutputBuffer()); } tool->ClearOutputBuffer(); } tool->PredictOff(); // purposefully placed to make tool->GetMTime different than before. } else { MITK_INFO << "won't do segmentation. Key found: " << QString::number(hashKey).toStdString(); if (m_Cache.contains(hashKey)) { nnUNetCache *cacheObject = m_Cache[hashKey]; MITK_INFO << "fetched pointer " << cacheObject->m_SegCache.GetPointer(); tool->SetOutputBuffer(const_cast(cacheObject->m_SegCache.GetPointer())); this->SegmentationResultHandler(tool, true); } } m_Controls.previewButton->setEnabled(true); } catch (const std::exception &e) { std::stringstream errorMsg; errorMsg << "STATUS: Error while processing parameters for nnUNet segmentation. Reason: " << e.what(); this->ShowErrorMessage(errorMsg.str()); this->WriteErrorMessage(QString::fromStdString(errorMsg.str())); m_Controls.previewButton->setEnabled(true); tool->PredictOff(); return; } catch (...) { std::string errorMsg = "Unkown error occured while generation nnUNet segmentation."; this->ShowErrorMessage(errorMsg); m_Controls.previewButton->setEnabled(true); tool->PredictOff(); return; } if (!pythonPathTextItem.isEmpty()) { // only cache if the prediction ended without errors. m_Settings.setValue("nnUNet/LastPythonPath", pythonPathTextItem); } } } void QmitknnUNetToolGUI::OnRefreshPresssed() { const QString resultsFolder = m_Controls.modeldirectoryBox->directory(); this->OnDirectoryChanged(resultsFolder); } void QmitknnUNetToolGUI::OnDirectoryChanged(const QString &resultsFolder) { m_IsResultsFolderValid = false; m_Controls.previewButton->setEnabled(false); this->ClearAllComboBoxes(); this->ClearAllModalities(); m_ParentFolder = std::make_shared(resultsFolder); auto tasks = m_ParentFolder->getAllTasks(); tasks.removeDuplicates(); std::for_each(tasks.begin(), tasks.end(), [this](QString task) { m_Controls.taskBox->addItem(task); }); m_Settings.setValue("nnUNet/LastRESULTS_FOLDERPath", resultsFolder); } void QmitknnUNetToolGUI::OnModelChanged(const QString &model) { if (model.isEmpty()) { return; } this->ClearAllModalities(); auto selectedTask = m_Controls.taskBox->currentText(); ctkComboBox *box = qobject_cast(sender()); if (box == m_Controls.modelBox) { if (model == m_VALID_MODELS.last()) { m_Controls.trainerBox->setVisible(false); m_Controls.trainerLabel->setVisible(false); m_Controls.plannerBox->setVisible(false); m_Controls.plannerLabel->setVisible(false); m_Controls.foldBox->setVisible(false); m_Controls.foldLabel->setVisible(false); m_Controls.previewButton->setEnabled(false); this->ShowEnsembleLayout(true); auto models = m_ParentFolder->getModelsForTask(m_Controls.taskBox->currentText()); models.removeDuplicates(); models.removeOne(m_VALID_MODELS.last()); for (auto &layout : m_EnsembleParams) { layout->modelBox->clear(); layout->trainerBox->clear(); layout->plannerBox->clear(); std::for_each(models.begin(), models.end(), [&layout, this](QString model) { if (m_VALID_MODELS.contains(model, Qt::CaseInsensitive)) layout->modelBox->addItem(model); }); } } else { m_Controls.trainerBox->setVisible(true); m_Controls.trainerLabel->setVisible(true); m_Controls.plannerBox->setVisible(true); m_Controls.plannerLabel->setVisible(true); m_Controls.foldBox->setVisible(true); m_Controls.foldLabel->setVisible(true); m_Controls.previewButton->setEnabled(false); this->ShowEnsembleLayout(false); m_Controls.trainerBox->clear(); m_Controls.plannerBox->clear(); auto trainerPlanners = m_ParentFolder->getTrainerPlannersForTask(selectedTask, model); if(trainerPlanners.isEmpty()) { this->ShowErrorMessage("No plans.pkl found for "+model.toStdString()+". Check your directory or download the task again."); this->SetComboBoxToNone(m_Controls.foldBox); return; } QStringList trainers, planners; std::tie(trainers, planners) = ExtractTrainerPlannerFromString(trainerPlanners); std::for_each( trainers.begin(), trainers.end(), [this](QString trainer) { m_Controls.trainerBox->addItem(trainer); }); std::for_each( planners.begin(), planners.end(), [this](QString planner) { m_Controls.plannerBox->addItem(planner); }); } } else if (!m_EnsembleParams.empty()) { m_Controls.previewButton->setEnabled(false); for (auto &layout : m_EnsembleParams) { if (box == layout->modelBox) { layout->trainerBox->clear(); layout->plannerBox->clear(); auto trainerPlanners = m_ParentFolder->getTrainerPlannersForTask(selectedTask, model); if(trainerPlanners.isEmpty()) { this->ShowErrorMessage("No plans.pkl found for "+model.toStdString()+". Check your directory or download the task again."); this->SetComboBoxToNone(layout->foldBox); return; } QStringList trainers, planners; std::tie(trainers, planners) = ExtractTrainerPlannerFromString(trainerPlanners); std::for_each(trainers.begin(), trainers.end(), [&layout](const QString &trainer) { layout->trainerBox->addItem(trainer); }); std::for_each(planners.begin(), planners.end(), [&layout](const QString &planner) { layout->plannerBox->addItem(planner); }); break; } } } } void QmitknnUNetToolGUI::OnTaskChanged(const QString &task) { if (task.isEmpty()) { return; } m_Controls.modelBox->clear(); auto models = m_ParentFolder->getModelsForTask(task); models.removeDuplicates(); if (!models.contains(m_VALID_MODELS.last(), Qt::CaseInsensitive)) { models << m_VALID_MODELS.last(); // add ensemble even if folder doesn't exist } std::for_each(models.begin(), models.end(), [this](QString model) { if (m_VALID_MODELS.contains(model, Qt::CaseInsensitive)) m_Controls.modelBox->addItem(model); }); } void QmitknnUNetToolGUI::OnTrainerChanged(const QString &plannerSelected) { if (plannerSelected.isEmpty()) { return; } m_IsResultsFolderValid = false; QString parentPath; auto *box = qobject_cast(sender()); if (box == m_Controls.plannerBox) { m_Controls.foldBox->clear(); auto selectedTrainer = m_Controls.trainerBox->currentText(); auto selectedTask = m_Controls.taskBox->currentText(); auto selectedModel = m_Controls.modelBox->currentText(); auto folds = m_ParentFolder->getFoldsForTrainerPlanner( selectedTrainer, plannerSelected, selectedTask, selectedModel); if(folds.isEmpty()) { this->ShowErrorMessage("No valid folds found. Check your directory or download the task again."); this->SetComboBoxToNone(m_Controls.foldBox); return; } std::for_each(folds.begin(), folds.end(), [this](QString fold) { if (fold.startsWith("fold_", Qt::CaseInsensitive)) // imposed by nnUNet m_Controls.foldBox->addItem(fold); }); if (m_Controls.foldBox->count() != 0) { m_IsResultsFolderValid = true; this->CheckAllInCheckableComboBox(m_Controls.foldBox); auto tempPath = QStringList() << m_ParentFolder->getResultsFolder() << "nnUNet" << selectedModel << selectedTask << QString("%1__%2").arg(selectedTrainer, plannerSelected); parentPath = QDir::cleanPath(tempPath.join(QDir::separator())); } } else if (!m_EnsembleParams.empty()) { for (auto &layout : m_EnsembleParams) { if (box == layout->plannerBox) { layout->foldBox->clear(); auto selectedTrainer = layout->trainerBox->currentText(); auto selectedTask = m_Controls.taskBox->currentText(); auto selectedModel = layout->modelBox->currentText(); auto folds = m_ParentFolder->getFoldsForTrainerPlanner( selectedTrainer, plannerSelected, selectedTask, selectedModel); if(folds.isEmpty()) { this->ShowErrorMessage("No valid folds found. Check your directory."); this->SetComboBoxToNone(layout->foldBox); return; } std::for_each(folds.begin(), folds.end(), [&layout](const QString &fold) { if (fold.startsWith("fold_", Qt::CaseInsensitive)) // imposed by nnUNet layout->foldBox->addItem(fold); }); if (layout->foldBox->count() != 0) { this->CheckAllInCheckableComboBox(layout->foldBox); m_IsResultsFolderValid = true; auto tempPath = QStringList() << m_ParentFolder->getResultsFolder() << "nnUNet" << selectedModel << selectedTask << QString("%1__%2").arg(selectedTrainer, plannerSelected); parentPath = QDir::cleanPath(tempPath.join(QDir::separator())); } break; } } } if (m_IsResultsFolderValid) { m_Controls.previewButton->setEnabled(true); const QString mitkJsonFile = parentPath + QDir::separator() + m_MITK_EXPORT_JSON_FILENAME; this->DumpJSONfromPickle(parentPath); if (QFile::exists(mitkJsonFile)) { this->DisplayMultiModalInfoFromJSON(mitkJsonFile); } } } void QmitknnUNetToolGUI::OnPythonPathChanged(const QString &pyEnv) { if (pyEnv == QString("Select")) { QString path = QFileDialog::getExistingDirectory(m_Controls.pythonEnvComboBox->parentWidget(), "Python Path", "dir"); if (!path.isEmpty()) { this->OnPythonPathChanged(path); // recall same function for new path validation m_Controls.pythonEnvComboBox->insertItem(0, path); m_Controls.pythonEnvComboBox->setCurrentIndex(0); } } else if (!this->IsNNUNetInstalled(pyEnv)) { std::string warning = "WARNING: nnUNet is not detected on the Python environment you selected. Please select another " "environment or create one. For more info refer https://github.com/MIC-DKFZ/nnUNet"; this->ShowErrorMessage(warning); this->DisableEverything(); m_Controls.availableBox->clear(); } else { m_Controls.modeldirectoryBox->setEnabled(true); m_Controls.refreshdirectoryBox->setEnabled(true); m_Controls.multiModalBox->setEnabled(true); QString setVal = this->FetchResultsFolderFromEnv(); if (!setVal.isEmpty()) { m_Controls.modeldirectoryBox->setDirectory(setVal); } this->OnRefreshPresssed(); m_PythonPath = pyEnv.mid(pyEnv.indexOf(" ") + 1); #ifdef _WIN32 if (!(m_PythonPath.endsWith("Scripts", Qt::CaseInsensitive) || m_PythonPath.endsWith("Scripts/", Qt::CaseInsensitive))) { m_PythonPath += QDir::separator() + QString("Scripts"); } #else if (!(m_PythonPath.endsWith("bin", Qt::CaseInsensitive) || m_PythonPath.endsWith("bin/", Qt::CaseInsensitive))) { m_PythonPath += QDir::separator() + QString("bin"); } #endif // Export available model info as json and fill them for Download QString tempPath = QString::fromStdString(mitk::IOUtil::GetTempPath()); this->ExportAvailableModelsAsJSON(tempPath); const QString jsonPath = tempPath + QDir::separator() + m_AVAILABLE_MODELS_JSON_FILENAME; if (QFile::exists(jsonPath)) { this->FillAvailableModelsInfoFromJSON(jsonPath); } } } void QmitknnUNetToolGUI::OnCheckBoxChanged(int state) { bool visibility = false; if (state == Qt::Checked) { visibility = true; } ctkCheckBox *box = qobject_cast(sender()); if (box != nullptr) { if (box->objectName() == QString("multiModalBox")) { m_Controls.requiredModalitiesLabel->setVisible(visibility); m_Controls.multiModalValueLabel->setVisible(visibility); if (!visibility) { this->OnModalitiesNumberChanged(0); m_Controls.multiModalValueLabel->setText("0"); this->ClearAllModalLabels(); } } } } void QmitknnUNetToolGUI::OnModalitiesNumberChanged(int num) { while (num > static_cast(m_Modalities.size())) { QmitkSingleNodeSelectionWidget *multiModalBox = new QmitkSingleNodeSelectionWidget(this); mitk::nnUNetTool::Pointer tool = this->GetConnectedToolAs(); multiModalBox->SetDataStorage(tool->GetDataStorage()); multiModalBox->SetInvalidInfo("Select corresponding modalities"); multiModalBox->SetNodePredicate(m_MultiModalPredicate); multiModalBox->setObjectName(QString("multiModal_" + QString::number(m_Modalities.size() + 1))); m_Controls.advancedSettingsLayout->addWidget(multiModalBox, m_UI_ROWS + m_Modalities.size() + 1, 1, 1, 3); m_Modalities.push_back(multiModalBox); } while (num < static_cast(m_Modalities.size()) && !m_Modalities.empty()) { QmitkSingleNodeSelectionWidget *child = m_Modalities.back(); delete child; // delete the layout item m_Modalities.pop_back(); } m_Controls.advancedSettingsLayout->update(); } void QmitknnUNetToolGUI::AutoParsePythonPaths() { QString homeDir = QDir::homePath(); std::vector searchDirs; #ifdef _WIN32 searchDirs.push_back(QString("C:") + QDir::separator() + QString("ProgramData") + QDir::separator() + QString("anaconda3")); #else // Add search locations for possible standard python paths here searchDirs.push_back(homeDir + QDir::separator() + "environments"); searchDirs.push_back(homeDir + QDir::separator() + "anaconda3"); searchDirs.push_back(homeDir + QDir::separator() + "miniconda3"); searchDirs.push_back(homeDir + QDir::separator() + "opt" + QDir::separator() + "miniconda3"); searchDirs.push_back(homeDir + QDir::separator() + "opt" + QDir::separator() + "anaconda3"); #endif for (QString searchDir : searchDirs) { if (searchDir.endsWith("anaconda3", Qt::CaseInsensitive)) { if (QDir(searchDir).exists()) { m_Controls.pythonEnvComboBox->insertItem(0, "(base): " + searchDir); searchDir.append((QDir::separator() + QString("envs"))); } } for (QDirIterator subIt(searchDir, QDir::AllDirs, QDirIterator::NoIteratorFlags); subIt.hasNext();) { subIt.next(); QString envName = subIt.fileName(); if (!envName.startsWith('.')) // Filter out irrelevent hidden folders, if any. { m_Controls.pythonEnvComboBox->insertItem(0, "(" + envName + "): " + subIt.filePath()); } } } m_Controls.pythonEnvComboBox->setCurrentIndex(-1); } void QmitknnUNetToolGUI::SegmentationProcessFailed() { this->WriteErrorMessage( "STATUS: Error in the segmentation process.
No resulting segmentation can be loaded."); this->setCursor(Qt::ArrowCursor); std::stringstream stream; stream << "Error in the segmentation process. No resulting segmentation can be loaded."; this->ShowErrorMessage(stream.str()); } void QmitknnUNetToolGUI::SegmentationResultHandler(mitk::nnUNetTool *tool, bool forceRender) { if (forceRender) { tool->RenderOutputBuffer(); } m_FirstPreviewComputation = false; this->SetLabelSetPreview(tool->GetPreviewSegmentation()); this->WriteStatusMessage("STATUS: Segmentation task finished successfully."); this->ActualizePreviewLabelVisibility(); } void QmitknnUNetToolGUI::ShowEnsembleLayout(bool visible) { if (m_EnsembleParams.empty()) { ctkCollapsibleGroupBox *groupBoxModel1 = new ctkCollapsibleGroupBox(this); auto lay1 = std::make_unique(groupBoxModel1); groupBoxModel1->setObjectName(QString::fromUtf8("model_1_Box")); groupBoxModel1->setTitle(QString::fromUtf8("Model 1")); groupBoxModel1->setMinimumSize(QSize(0, 0)); groupBoxModel1->setCollapsedHeight(5); groupBoxModel1->setCollapsed(false); groupBoxModel1->setFlat(true); groupBoxModel1->setAlignment(Qt::AlignRight); m_Controls.advancedSettingsLayout->addWidget(groupBoxModel1, 5, 0, 1, 2); connect(lay1->modelBox, SIGNAL(currentTextChanged(const QString &)), this, SLOT(OnModelChanged(const QString &))); connect( lay1->plannerBox, SIGNAL(currentTextChanged(const QString &)), this, SLOT(OnTrainerChanged(const QString &))); m_EnsembleParams.push_back(std::move(lay1)); ctkCollapsibleGroupBox *groupBoxModel2 = new ctkCollapsibleGroupBox(this); auto lay2 = std::make_unique(groupBoxModel2); groupBoxModel2->setObjectName(QString::fromUtf8("model_2_Box")); groupBoxModel2->setTitle(QString::fromUtf8("Model 2")); groupBoxModel2->setMinimumSize(QSize(0, 0)); groupBoxModel2->setCollapsedHeight(5); groupBoxModel2->setCollapsed(false); groupBoxModel2->setFlat(true); groupBoxModel2->setAlignment(Qt::AlignLeft); m_Controls.advancedSettingsLayout->addWidget(groupBoxModel2, 5, 2, 1, 2); connect(lay2->modelBox, SIGNAL(currentTextChanged(const QString &)), this, SLOT(OnModelChanged(const QString &))); connect( lay2->plannerBox, SIGNAL(currentTextChanged(const QString &)), this, SLOT(OnTrainerChanged(const QString &))); m_EnsembleParams.push_back(std::move(lay2)); } for (auto &layout : m_EnsembleParams) { layout->setVisible(visible); } } void QmitknnUNetToolGUI::OnDownloadModel() { auto selectedTask = m_Controls.availableBox->currentText(); if(!selectedTask.isEmpty()) { auto spExec = mitk::ProcessExecutor::New(); mitk::ProcessExecutor::ArgumentListType args; args.push_back(selectedTask.toStdString()); this->WriteStatusMessage( "Downloading the requested task in to the selected Results Folder. This might take some time " "depending on your internet connection..."); m_Processes["DOWNLOAD"] = spExec; if (!m_nnUNetThread->isRunning()) { MITK_DEBUG << "Starting thread..."; m_nnUNetThread->start(); } QString resultsFolder = m_ParentFolder->getResultsFolder(); emit Operate(resultsFolder, m_PythonPath, spExec, args); m_Controls.stopDownloadButton->setVisible(true); m_Controls.startDownloadButton->setVisible(false); } } void QmitknnUNetToolGUI::OnDownloadWorkerExit(const bool isSuccess, const QString message) { if (isSuccess) { this->WriteStatusMessage(message + QString(" Click Refresh Results Folder to use the new Task.")); } else { MITK_ERROR << "Download FAILED! " << message.toStdString(); this->WriteStatusMessage(QString("Download failed. Check your internet connection. " + message)); } m_Controls.stopDownloadButton->setVisible(false); m_Controls.startDownloadButton->setVisible(true); } void QmitknnUNetToolGUI::OnStopDownload() { mitk::ProcessExecutor::Pointer spExec = m_Processes["DOWNLOAD"]; spExec->KillProcess(); this->WriteStatusMessage("Download Killed by the user."); m_Controls.stopDownloadButton->setVisible(false); m_Controls.startDownloadButton->setVisible(true); } void QmitknnUNetToolGUI::OnClearCachePressed() { m_Cache.clear(); this->UpdateCacheCountOnUI(); } diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkBooleanOperationsWidget.cpp b/Modules/SegmentationUI/SegmentationUtilities/QmitkBooleanOperationsWidget.cpp index c1e2aa0412..58d982de3f 100644 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkBooleanOperationsWidget.cpp +++ b/Modules/SegmentationUI/SegmentationUtilities/QmitkBooleanOperationsWidget.cpp @@ -1,158 +1,157 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkBooleanOperationsWidget.h" #include #include #include -#include +#include +#include #include #include static const char* const HelpText = "Select two different segmentations above"; namespace { static std::string GetPrefix(mitk::BooleanOperation::Type type) { switch (type) { case mitk::BooleanOperation::Difference: return "DifferenceFrom_"; case mitk::BooleanOperation::Intersection: return "IntersectionWith_"; case mitk::BooleanOperation::Union: return "UnionWith_"; default: assert(false && "Unknown boolean operation type"); return "UNKNOWN_BOOLEAN_OPERATION_WITH_"; } } static void AddToDataStorage(mitk::DataStorage::Pointer dataStorage, mitk::Image::Pointer segmentation, const std::string& name, mitk::DataNode::Pointer parent = nullptr) { if (dataStorage.IsNull()) { std::string exception = "Cannot add result to the data storage. Data storage invalid."; MITK_ERROR << "Boolean operation failed: " << exception; QMessageBox::information(nullptr, "Boolean operation failed", QString::fromStdString(exception)); } auto dataNode = mitk::DataNode::New(); dataNode->SetName(name); dataNode->SetData(segmentation); dataStorage->Add(dataNode, parent); } } -QmitkBooleanOperationsWidget::QmitkBooleanOperationsWidget(mitk::DataStorage* dataStorage, - mitk::SliceNavigationController* timeNavigationController, - QWidget* parent) - : QmitkSegmentationUtilityWidget(timeNavigationController, parent) +QmitkBooleanOperationsWidget::QmitkBooleanOperationsWidget(mitk::DataStorage* dataStorage, QWidget* parent) + : QWidget(parent) { m_Controls = new Ui::QmitkBooleanOperationsWidgetControls; m_Controls->setupUi(this); m_Controls->dataSelectionWidget->SetDataStorage(dataStorage); m_Controls->dataSelectionWidget->AddDataSelection("", "Select 1st segmentation", "Select 1st segmentation", "", QmitkDataSelectionWidget::SegmentationPredicate); m_Controls->dataSelectionWidget->AddDataSelection("", "Select 2nd segmentation", "Select 2nd segmentation", "", QmitkDataSelectionWidget::SegmentationPredicate); m_Controls->dataSelectionWidget->SetHelpText(HelpText); connect(m_Controls->dataSelectionWidget, SIGNAL(SelectionChanged(unsigned int, const mitk::DataNode*)), this, SLOT(OnSelectionChanged(unsigned int, const mitk::DataNode*))); connect(m_Controls->differenceButton, SIGNAL(clicked()), this, SLOT(OnDifferenceButtonClicked())); connect(m_Controls->intersectionButton, SIGNAL(clicked()), this, SLOT(OnIntersectionButtonClicked())); connect(m_Controls->unionButton, SIGNAL(clicked()), this, SLOT(OnUnionButtonClicked())); } QmitkBooleanOperationsWidget::~QmitkBooleanOperationsWidget() { } void QmitkBooleanOperationsWidget::OnSelectionChanged(unsigned int, const mitk::DataNode*) { auto dataSelectionWidget = m_Controls->dataSelectionWidget; auto nodeA = dataSelectionWidget->GetSelection(0); auto nodeB = dataSelectionWidget->GetSelection(1); if (nodeA.IsNotNull() && nodeB.IsNotNull() && nodeA != nodeB) { dataSelectionWidget->SetHelpText(""); this->EnableButtons(); } else { dataSelectionWidget->SetHelpText(HelpText); this->EnableButtons(false); } } void QmitkBooleanOperationsWidget::EnableButtons(bool enable) { m_Controls->differenceButton->setEnabled(enable); m_Controls->intersectionButton->setEnabled(enable); m_Controls->unionButton->setEnabled(enable); } void QmitkBooleanOperationsWidget::OnDifferenceButtonClicked() { this->DoBooleanOperation(mitk::BooleanOperation::Difference); } void QmitkBooleanOperationsWidget::OnIntersectionButtonClicked() { this->DoBooleanOperation(mitk::BooleanOperation::Intersection); } void QmitkBooleanOperationsWidget::OnUnionButtonClicked() { this->DoBooleanOperation(mitk::BooleanOperation::Union); } void QmitkBooleanOperationsWidget::DoBooleanOperation(mitk::BooleanOperation::Type type) { - auto timeNavigationController = this->GetTimeNavigationController(); + const auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); assert(timeNavigationController != nullptr); mitk::Image::Pointer segmentationA = dynamic_cast(m_Controls->dataSelectionWidget->GetSelection(0)->GetData()); mitk::Image::Pointer segmentationB = dynamic_cast(m_Controls->dataSelectionWidget->GetSelection(1)->GetData()); mitk::Image::Pointer result; try { mitk::BooleanOperation booleanOperation(type, segmentationA, segmentationB, timeNavigationController->GetSelectedTimePoint()); result = booleanOperation.GetResult(); assert(result.IsNotNull()); auto dataSelectionWidget = m_Controls->dataSelectionWidget; AddToDataStorage( dataSelectionWidget->GetDataStorage(), result, GetPrefix(type) + dataSelectionWidget->GetSelection(1)->GetName(), dataSelectionWidget->GetSelection(0)); } catch (const mitk::Exception& exception) { MITK_ERROR << "Boolean operation failed: " << exception.GetDescription(); QMessageBox::information(nullptr, "Boolean operation failed", exception.GetDescription()); } } diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkBooleanOperationsWidget.h b/Modules/SegmentationUI/SegmentationUtilities/QmitkBooleanOperationsWidget.h index 29b0e89e87..5d09e3eec6 100644 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkBooleanOperationsWidget.h +++ b/Modules/SegmentationUI/SegmentationUtilities/QmitkBooleanOperationsWidget.h @@ -1,55 +1,54 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkBooleanOperationsWidget_h #define QmitkBooleanOperationsWidget_h #include #include -#include + +#include namespace Ui { class QmitkBooleanOperationsWidgetControls; } namespace mitk { class DataNode; class DataStorage; } -class MITKSEGMENTATIONUI_EXPORT QmitkBooleanOperationsWidget : public QmitkSegmentationUtilityWidget +class MITKSEGMENTATIONUI_EXPORT QmitkBooleanOperationsWidget : public QWidget { Q_OBJECT public: - explicit QmitkBooleanOperationsWidget(mitk::DataStorage* dataStorage, - mitk::SliceNavigationController* timeNavigationController, - QWidget* parent = nullptr); + explicit QmitkBooleanOperationsWidget(mitk::DataStorage* dataStorage, QWidget* parent = nullptr); ~QmitkBooleanOperationsWidget() override; private slots: void OnSelectionChanged(unsigned int index, const mitk::DataNode* selection); void OnDifferenceButtonClicked(); void OnIntersectionButtonClicked(); void OnUnionButtonClicked(); private: void EnableButtons(bool enable = true); void DoBooleanOperation(mitk::BooleanOperation::Type type); Ui::QmitkBooleanOperationsWidgetControls* m_Controls; }; #endif diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkContourModelToImageWidget.cpp b/Modules/SegmentationUI/SegmentationUtilities/QmitkContourModelToImageWidget.cpp index 883633b384..604206f78e 100644 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkContourModelToImageWidget.cpp +++ b/Modules/SegmentationUI/SegmentationUtilities/QmitkContourModelToImageWidget.cpp @@ -1,259 +1,258 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkContourModelToImageWidget.h" #include #include #include #include #include #include -#include +#include +#include #include #include #include #include static const char* const HelpText = "Select a image and a contour(set)"; class QmitkContourModelToImageWidgetPrivate { public: QmitkContourModelToImageWidgetPrivate(); ~QmitkContourModelToImageWidgetPrivate(); /** @brief Check if selections is valid. */ void SelectionControl( unsigned int index, const mitk::DataNode* selection); /** @brief Enable buttons if data selction is valid. */ void EnableButtons(bool enable = true); /** @brief Does the actual contour filling */ mitk::LabelSetImage::Pointer FillContourModelSetIntoImage(mitk::Image *image, mitk::ContourModelSet *contourSet, mitk::TimePointType timePoint); Ui::QmitkContourModelToImageWidgetControls m_Controls; QFutureWatcher m_Watcher; }; QmitkContourModelToImageWidgetPrivate::QmitkContourModelToImageWidgetPrivate() { } QmitkContourModelToImageWidgetPrivate::~QmitkContourModelToImageWidgetPrivate() { } void QmitkContourModelToImageWidgetPrivate::EnableButtons(bool enable) { m_Controls.btnProcess->setEnabled(enable); } void QmitkContourModelToImageWidgetPrivate::SelectionControl(unsigned int index, const mitk::DataNode* /*selection*/) { QmitkDataSelectionWidget* dataSelectionWidget = m_Controls.dataSelectionWidget; mitk::DataNode::Pointer node = dataSelectionWidget->GetSelection(index); dataSelectionWidget->SetHelpText(""); this->EnableButtons(); } mitk::LabelSetImage::Pointer QmitkContourModelToImageWidgetPrivate::FillContourModelSetIntoImage(mitk::Image* image, mitk::ContourModelSet* contourSet, mitk::TimePointType timePoint) { // Use mitk::ContourModelSetToImageFilter to fill the ContourModelSet into the image mitk::ContourModelSetToImageFilter::Pointer contourFiller = mitk::ContourModelSetToImageFilter::New(); auto timeStep = image->GetTimeGeometry()->TimePointToTimeStep(timePoint); contourFiller->SetTimeStep(timeStep); contourFiller->SetImage(image); contourFiller->SetInput(contourSet); contourFiller->MakeOutputBinaryOn(); try { contourFiller->Update(); } catch (const std::exception & e) { MITK_ERROR << "Error while converting contour model. "<< e.what(); } catch (...) { MITK_ERROR << "Unknown error while converting contour model."; } if (nullptr == contourFiller->GetOutput()) { MITK_ERROR<<"Could not write the selected contours into the image!"; } auto result = mitk::LabelSetImage::New(); result->InitializeByLabeledImage(contourFiller->GetOutput()); return result; } void QmitkContourModelToImageWidget::OnSelectionChanged(unsigned int index, const mitk::DataNode* selection) { Q_D(QmitkContourModelToImageWidget); QmitkDataSelectionWidget* dataSelectionWidget = d->m_Controls.dataSelectionWidget; mitk::DataNode::Pointer node0 = dataSelectionWidget->GetSelection(0); mitk::DataNode::Pointer node1 = dataSelectionWidget->GetSelection(1); if (node0.IsNull() || node1.IsNull() ) { d->EnableButtons(false); dataSelectionWidget->SetHelpText(HelpText); } else { d->SelectionControl(index, selection); } } void QmitkContourModelToImageWidget::OnProcessingFinished() { // Called when processing finished // Adding the result to the data storage Q_D(QmitkContourModelToImageWidget); // Adding the result to the data storage auto result = d->m_Watcher.result(); if (result.IsNotNull()) { QmitkDataSelectionWidget* dataSelectionWidget = d->m_Controls.dataSelectionWidget; mitk::DataNode::Pointer imageNode = dataSelectionWidget->GetSelection(0); mitk::DataNode::Pointer contourNode = dataSelectionWidget->GetSelection(1); mitk::DataNode::Pointer filled = mitk::DataNode::New(); std::stringstream stream; stream << imageNode->GetName(); stream << "_"; stream << contourNode->GetName(); filled->SetName(stream.str()); filled->SetData(result); auto dataStorage = dataSelectionWidget->GetDataStorage(); if (dataStorage.IsNull()) { std::string exception = "Cannot add result to the data storage. Data storage invalid."; MITK_ERROR << "Error filling contours into an image: " << exception; QMessageBox::information(nullptr, "Error filling contours into an image", QString::fromStdString(exception)); } dataStorage->Add(filled, imageNode); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } else { MITK_ERROR<<"Error filling contours into an image!"; } d->EnableButtons(); } void QmitkContourModelToImageWidget::OnProcessPressed() { Q_D(QmitkContourModelToImageWidget); QmitkDataSelectionWidget* dataSelectionWidget = d->m_Controls.dataSelectionWidget; mitk::DataNode::Pointer imageNode = dataSelectionWidget->GetSelection(0); mitk::DataNode::Pointer contourNode = dataSelectionWidget->GetSelection(1); // Check if data nodes are valid if(imageNode.IsNull() || contourNode.IsNull() ) { MITK_ERROR << "Selection does not contain valid data"; QMessageBox::information( this, "Contour To Image", "Selection does not contain valid data, please select a binary image and a contour(set)", QMessageBox::Ok ); d->m_Controls.btnProcess->setEnabled(false); return; } mitk::Image::Pointer image = static_cast(imageNode->GetData()); // Check if the image is valid if (image.IsNull()) { MITK_ERROR<<"Error writing contours into image! Invalid image data selected!"; return; } - const auto timePoint = this->GetTimeNavigationController()->GetSelectedTimePoint(); + const mitk::TimePointType timePoint = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); if (!image->GetTimeGeometry()->IsValidTimePoint(timePoint)) { MITK_ERROR << "Error writing contours into image! Currently selected time point is not supported by selected image data."; return; } // Check if the selected contours are valid mitk::ContourModelSet::Pointer contourSet; mitk::ContourModel::Pointer contour = dynamic_cast(contourNode->GetData()); if (contour.IsNotNull()) { contourSet = mitk::ContourModelSet::New(); contourSet->AddContourModel(contour); } else { contourSet = static_cast(contourNode->GetData()); if (contourSet.IsNull()) { MITK_ERROR<<"Error writing contours into binary image! Invalid contour data selected!"; return; } } //Disable Buttons during calculation and initialize Progressbar d->EnableButtons(false); // Start the computation in a background thread QFuture< mitk::LabelSetImage::Pointer > future = QtConcurrent::run(d, &QmitkContourModelToImageWidgetPrivate::FillContourModelSetIntoImage, image, contourSet, timePoint); d->m_Watcher.setFuture(future); } -QmitkContourModelToImageWidget::QmitkContourModelToImageWidget(mitk::DataStorage* dataStorage, - mitk::SliceNavigationController* timeNavigationController, - QWidget* parent) - : QmitkSegmentationUtilityWidget(timeNavigationController, parent), - d_ptr(new QmitkContourModelToImageWidgetPrivate()) +QmitkContourModelToImageWidget::QmitkContourModelToImageWidget(mitk::DataStorage* dataStorage, QWidget* parent) + : QWidget(parent) + , d_ptr(new QmitkContourModelToImageWidgetPrivate()) { Q_D(QmitkContourModelToImageWidget); // Set up UI d->m_Controls.setupUi(this); d->m_Controls.dataSelectionWidget->SetDataStorage(dataStorage); d->m_Controls.dataSelectionWidget->AddDataSelection(QmitkDataSelectionWidget::ImageAndSegmentationPredicate); d->m_Controls.dataSelectionWidget->AddDataSelection(QmitkDataSelectionWidget::ContourModelPredicate); d->m_Controls.dataSelectionWidget->SetHelpText(HelpText); d->EnableButtons(false); // Create connections connect (d->m_Controls.btnProcess, SIGNAL(pressed()), this, SLOT(OnProcessPressed())); connect(d->m_Controls.dataSelectionWidget, SIGNAL(SelectionChanged(unsigned int, const mitk::DataNode*)), this, SLOT(OnSelectionChanged(unsigned int, const mitk::DataNode*))); connect(&d->m_Watcher, SIGNAL(finished()), this, SLOT(OnProcessingFinished())); if( d->m_Controls.dataSelectionWidget->GetSelection(0).IsNotNull() && d->m_Controls.dataSelectionWidget->GetSelection(1).IsNotNull() ) { OnSelectionChanged(0, d->m_Controls.dataSelectionWidget->GetSelection(0)); } } QmitkContourModelToImageWidget::~QmitkContourModelToImageWidget() { } diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkContourModelToImageWidget.h b/Modules/SegmentationUI/SegmentationUtilities/QmitkContourModelToImageWidget.h index 562d254434..797def3584 100644 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkContourModelToImageWidget.h +++ b/Modules/SegmentationUI/SegmentationUtilities/QmitkContourModelToImageWidget.h @@ -1,76 +1,72 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkContourModelToImageWidget_h #define QmitkContourModelToImageWidget_h #include -#include - #include +#include class QmitkContourModelToImageWidgetPrivate; namespace mitk { class DataNode; class DataStorage; class Image; class ContourModelSet; class ContourModel; class Geometry3D; class PlaneGeometry; } /*! \brief QmitkContourModelToImageWidget Tool masks an image with a binary image or a surface. The Method requires an image and a binary image mask or a surface. The input image and the binary image mask must be of the same size. Masking with a surface creates first a binary image of the surface and then use this for the masking of the input image. */ -class MITKSEGMENTATIONUI_EXPORT QmitkContourModelToImageWidget : public QmitkSegmentationUtilityWidget +class MITKSEGMENTATIONUI_EXPORT QmitkContourModelToImageWidget : public QWidget { Q_OBJECT public: /** @brief Default constructor, including creation of GUI elements and signals/slots connections. */ - explicit QmitkContourModelToImageWidget(mitk::DataStorage* dataStorage, - mitk::SliceNavigationController* timeNavigationController, - QWidget* parent = nullptr); - + explicit QmitkContourModelToImageWidget(mitk::DataStorage* dataStorage, QWidget* parent = nullptr); /** @brief Defaul destructor. */ ~QmitkContourModelToImageWidget() override; private slots: /** @brief This slot is called if the selection in the workbench is changed. */ void OnSelectionChanged(unsigned int index, const mitk::DataNode* selection); /** @brief This slot is called if user activates the button to mask an image. */ void OnProcessPressed(); /** @brief This slot is called after processing is finished */ void OnProcessingFinished(); private: QScopedPointer d_ptr; Q_DECLARE_PRIVATE(QmitkContourModelToImageWidget) Q_DISABLE_COPY(QmitkContourModelToImageWidget) }; #endif diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkImageMaskingWidget.cpp b/Modules/SegmentationUI/SegmentationUtilities/QmitkImageMaskingWidget.cpp index 0e542d4d04..884c5a79cd 100644 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkImageMaskingWidget.cpp +++ b/Modules/SegmentationUI/SegmentationUtilities/QmitkImageMaskingWidget.cpp @@ -1,393 +1,389 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkImageMaskingWidget.h" #include -#include #include #include #include #include #include #include -#include #include #include #include #include #include #include #include #include namespace { bool IsSurface(const mitk::DataNode* dataNode) { if (nullptr != dataNode) { if (nullptr != dynamic_cast(dataNode->GetData())) return true; } return false; } } static const char* const HelpText = "Select an image and a segmentation or surface"; -QmitkImageMaskingWidget::QmitkImageMaskingWidget(mitk::DataStorage* dataStorage, - mitk::SliceNavigationController* timeNavigationController, - QWidget* parent) - : QmitkSegmentationUtilityWidget(timeNavigationController, parent) +QmitkImageMaskingWidget::QmitkImageMaskingWidget(mitk::DataStorage* dataStorage, QWidget* parent) + : QWidget(parent) { m_Controls = new Ui::QmitkImageMaskingWidgetControls; m_Controls->setupUi(this); m_Controls->dataSelectionWidget->SetDataStorage(dataStorage); m_Controls->dataSelectionWidget->AddDataSelection(QmitkDataSelectionWidget::ImagePredicate); m_Controls->dataSelectionWidget->AddDataSelection(QmitkDataSelectionWidget::SegmentationOrSurfacePredicate); m_Controls->dataSelectionWidget->SetHelpText(HelpText); // T28795: Disable 2-d reference images since they do not work yet (segmentations are at least 3-d images with a single slice) m_Controls->dataSelectionWidget->SetPredicate(0, mitk::NodePredicateAnd::New( mitk::NodePredicateNot::New(mitk::NodePredicateDimension::New(2)), m_Controls->dataSelectionWidget->GetPredicate(0))); this->EnableButtons(false); connect(m_Controls->btnMaskImage, SIGNAL(clicked()), this, SLOT(OnMaskImagePressed())); connect(m_Controls->rbnCustom, SIGNAL(toggled(bool)), this, SLOT(OnCustomValueButtonToggled(bool))); connect(m_Controls->dataSelectionWidget, SIGNAL(SelectionChanged(unsigned int, const mitk::DataNode*)), this, SLOT(OnSelectionChanged(unsigned int, const mitk::DataNode*))); if( m_Controls->dataSelectionWidget->GetSelection(0).IsNotNull() && m_Controls->dataSelectionWidget->GetSelection(1).IsNotNull() ) { this->OnSelectionChanged(0, m_Controls->dataSelectionWidget->GetSelection(0)); } } QmitkImageMaskingWidget::~QmitkImageMaskingWidget() { } void QmitkImageMaskingWidget::OnSelectionChanged(unsigned int index, const mitk::DataNode *selection) { auto *dataSelectionWidget = m_Controls->dataSelectionWidget; auto node0 = dataSelectionWidget->GetSelection(0); if (index == 0) { dataSelectionWidget->SetPredicate(1, QmitkDataSelectionWidget::SegmentationOrSurfacePredicate); if (node0.IsNotNull()) { dataSelectionWidget->SetPredicate(1, mitk::NodePredicateAnd::New( mitk::NodePredicateGeometry::New(node0->GetData()->GetGeometry()), dataSelectionWidget->GetPredicate(1))); } } auto node1 = dataSelectionWidget->GetSelection(1); if (node0.IsNull() || node1.IsNull()) { dataSelectionWidget->SetHelpText(HelpText); this->EnableButtons(false); } else { this->SelectionControl(index, selection); } } void QmitkImageMaskingWidget::SelectionControl(unsigned int index, const mitk::DataNode* selection) { QmitkDataSelectionWidget* dataSelectionWidget = m_Controls->dataSelectionWidget; mitk::DataNode::Pointer node = dataSelectionWidget->GetSelection(index); //if Image-Masking is enabled, check if image-dimension of reference and binary image is identical if( !IsSurface(dataSelectionWidget->GetSelection(1)) ) { if( dataSelectionWidget->GetSelection(0) == dataSelectionWidget->GetSelection(1) ) { dataSelectionWidget->SetHelpText("Select two different images above"); this->EnableButtons(false); return; } else if( node.IsNotNull() && selection ) { mitk::Image::Pointer referenceImage = dynamic_cast ( dataSelectionWidget->GetSelection(0)->GetData() ); mitk::Image::Pointer maskImage = dynamic_cast ( dataSelectionWidget->GetSelection(1)->GetData() ); if (maskImage.IsNull()) { dataSelectionWidget->SetHelpText("Different image sizes cannot be masked"); this->EnableButtons(false); return; } } else { dataSelectionWidget->SetHelpText(HelpText); return; } } dataSelectionWidget->SetHelpText(""); this->EnableButtons(); } void QmitkImageMaskingWidget::EnableButtons(bool enable) { m_Controls->grpBackgroundValue->setEnabled(enable); m_Controls->btnMaskImage->setEnabled(enable); } template void GetRange(const itk::Image*, double& bottom, double& top) { bottom = std::numeric_limits::lowest(); top = std::numeric_limits::max(); } void QmitkImageMaskingWidget::OnCustomValueButtonToggled(bool checked) { m_Controls->txtCustom->setEnabled(checked); } void QmitkImageMaskingWidget::OnMaskImagePressed() { //Disable Buttons during calculation and initialize Progressbar this->EnableButtons(false); mitk::ProgressBar::GetInstance()->AddStepsToDo(4); mitk::ProgressBar::GetInstance()->Progress(); QmitkDataSelectionWidget* dataSelectionWidget = m_Controls->dataSelectionWidget; //create result image, get mask node and reference image mitk::Image::Pointer resultImage(nullptr); mitk::DataNode::Pointer maskingNode = dataSelectionWidget->GetSelection(1); mitk::Image::Pointer referenceImage = static_cast(dataSelectionWidget->GetSelection(0)->GetData()); if(referenceImage.IsNull() || maskingNode.IsNull() ) { MITK_ERROR << "Selection does not contain an image"; QMessageBox::information( this, "Image and Surface Masking", "Selection does not contain an image", QMessageBox::Ok ); m_Controls->btnMaskImage->setEnabled(true); return; } //Do Image-Masking if (!IsSurface(maskingNode)) { mitk::ProgressBar::GetInstance()->Progress(); mitk::Image::Pointer maskImage = dynamic_cast ( maskingNode->GetData() ); if(maskImage.IsNull() ) { MITK_ERROR << "Selection does not contain a segmentation"; QMessageBox::information( this, "Image and Surface Masking", "Selection does not contain a segmentation", QMessageBox::Ok ); this->EnableButtons(); return; } resultImage = this->MaskImage(referenceImage, maskImage); } //Do Surface-Masking else { mitk::ProgressBar::GetInstance()->Progress(); //1. convert surface to image mitk::Surface::Pointer surface = dynamic_cast ( maskingNode->GetData() ); //TODO Get 3D Surface of current time step if(surface.IsNull()) { MITK_ERROR << "Selection does not contain a surface"; QMessageBox::information( this, "Image and Surface Masking", "Selection does not contain a surface", QMessageBox::Ok ); this->EnableButtons(); return; } mitk::Image::Pointer maskImage = this->ConvertSurfaceToImage( referenceImage, surface ); //2. mask reference image with mask image if(maskImage.IsNotNull() && referenceImage->GetLargestPossibleRegion().GetSize() == maskImage->GetLargestPossibleRegion().GetSize() ) { resultImage = this->MaskImage( referenceImage, maskImage ); } } mitk::ProgressBar::GetInstance()->Progress(); if( resultImage.IsNull() ) { MITK_ERROR << "Masking failed"; QMessageBox::information( this, "Image and Surface Masking", "Masking failed. For more information please see logging window.", QMessageBox::Ok ); this->EnableButtons(); mitk::ProgressBar::GetInstance()->Progress(4); return; } //Add result to data storage this->AddToDataStorage( dataSelectionWidget->GetDataStorage(), resultImage, dataSelectionWidget->GetSelection(0)->GetName() + "_" + dataSelectionWidget->GetSelection(1)->GetName(), dataSelectionWidget->GetSelection(0)); this->EnableButtons(); mitk::ProgressBar::GetInstance()->Progress(); } mitk::Image::Pointer QmitkImageMaskingWidget::MaskImage(mitk::Image::Pointer referenceImage, mitk::Image::Pointer maskImage ) { mitk::ScalarType backgroundValue = 0.0; if (m_Controls->rbnMinimum->isChecked()) { backgroundValue = referenceImage->GetStatistics()->GetScalarValueMin(); } else if (m_Controls->rbnCustom->isChecked()) { auto warningTitle = QStringLiteral("Invalid custom pixel value"); bool ok = false; auto originalBackgroundValue = m_Controls->txtCustom->text().toDouble(&ok); if (!ok) { // Input is not even a number QMessageBox::warning(nullptr, warningTitle, "Please enter a valid number as custom pixel value."); return nullptr; } else { // Clamp to the numerical limits of the pixel/component type double bottom, top; if (referenceImage->GetDimension() == 4) { AccessFixedDimensionByItk_n(referenceImage, GetRange, 4, (bottom, top)); } else { AccessByItk_n(referenceImage, GetRange, (bottom, top)); } backgroundValue = std::max(bottom, std::min(originalBackgroundValue, top)); // Get rid of decimals for integral numbers auto type = referenceImage->GetPixelType().GetComponentType(); if (type != itk::IOComponentEnum::FLOAT && type != itk::IOComponentEnum::DOUBLE) backgroundValue = std::round(backgroundValue); } // Ask the user for permission before correcting their input if (std::abs(originalBackgroundValue - backgroundValue) > 1e-4) { auto warningText = QString( "

The custom pixel value %1 lies not within the range of valid pixel values for the selected image.

" "

Apply the closest valid pixel value %2 instead?

").arg(originalBackgroundValue).arg(backgroundValue); auto ret = QMessageBox::warning( nullptr, warningTitle, warningText, QMessageBox::StandardButton::Apply | QMessageBox::StandardButton::Cancel, QMessageBox::StandardButton::Apply); if (QMessageBox::StandardButton::Apply != ret) return nullptr; m_Controls->txtCustom->setText(QString("%1").arg(backgroundValue)); } } auto maskFilter = mitk::MaskImageFilter::New(); maskFilter->SetInput(referenceImage); maskFilter->SetMask(maskImage); maskFilter->OverrideOutsideValueOn(); maskFilter->SetOutsideValue(backgroundValue); try { maskFilter->Update(); } catch(const itk::ExceptionObject& e) { MITK_ERROR << e.GetDescription(); return nullptr; } return maskFilter->GetOutput(); } mitk::Image::Pointer QmitkImageMaskingWidget::ConvertSurfaceToImage( mitk::Image::Pointer image, mitk::Surface::Pointer surface ) { mitk::ProgressBar::GetInstance()->AddStepsToDo(2); mitk::ProgressBar::GetInstance()->Progress(); mitk::SurfaceToImageFilter::Pointer surfaceToImageFilter = mitk::SurfaceToImageFilter::New(); surfaceToImageFilter->MakeOutputBinaryOn(); surfaceToImageFilter->SetInput(surface); surfaceToImageFilter->SetImage(image); try { surfaceToImageFilter->Update(); } catch(itk::ExceptionObject& excpt) { MITK_ERROR << excpt.GetDescription(); return nullptr; } mitk::ProgressBar::GetInstance()->Progress(); mitk::Image::Pointer resultImage = mitk::Image::New(); resultImage = surfaceToImageFilter->GetOutput(); return resultImage; } void QmitkImageMaskingWidget::AddToDataStorage(mitk::DataStorage::Pointer dataStorage, mitk::Image::Pointer segmentation, const std::string& name, mitk::DataNode::Pointer parent ) { if (dataStorage.IsNull()) { std::string exception = "Cannot add result to the data storage. Data storage invalid."; MITK_ERROR << "Masking failed: " << exception; QMessageBox::information(nullptr, "Masking failed", QString::fromStdString(exception)); } auto dataNode = mitk::DataNode::New(); dataNode->SetName(name); dataNode->SetData(segmentation); if (parent.IsNotNull()) { mitk::LevelWindow levelWindow; parent->GetLevelWindow(levelWindow); dataNode->SetLevelWindow(levelWindow); } dataStorage->Add(dataNode, parent); } diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkImageMaskingWidget.h b/Modules/SegmentationUI/SegmentationUtilities/QmitkImageMaskingWidget.h index b8be1847bf..5769a75990 100644 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkImageMaskingWidget.h +++ b/Modules/SegmentationUI/SegmentationUtilities/QmitkImageMaskingWidget.h @@ -1,87 +1,85 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkImageMaskingWidget_h #define QmitkImageMaskingWidget_h #include #include #include -#include + +#include namespace Ui { class QmitkImageMaskingWidgetControls; } namespace mitk { - class DataStorage; class Image; } /*! \brief QmitkImageMaskingWidget Tool masks an image with a binary image or a surface. The Method requires an image and a binary image mask or a surface. The input image and the binary image mask must be of the same size. Masking with a surface creates first a binary image of the surface and then use this for the masking of the input image. */ -class MITKSEGMENTATIONUI_EXPORT QmitkImageMaskingWidget : public QmitkSegmentationUtilityWidget +class MITKSEGMENTATIONUI_EXPORT QmitkImageMaskingWidget : public QWidget { Q_OBJECT public: /** @brief Default constructor, including creation of GUI elements and signals/slots connections. */ - explicit QmitkImageMaskingWidget(mitk::DataStorage* dataStorage, - mitk::SliceNavigationController* timeNavigationController, - QWidget* parent = nullptr); + explicit QmitkImageMaskingWidget(mitk::DataStorage* dataStorage, QWidget* parent = nullptr); /** @brief Defaul destructor. */ ~QmitkImageMaskingWidget() override; private slots: /** @brief This slot is called if the selection in the workbench is changed. */ void OnSelectionChanged(unsigned int index, const mitk::DataNode* selection); /** @brief This slot is called if user activates the button to mask an image. */ void OnMaskImagePressed(); /** @brief This slot is called if the user toggles the "Custom" radio button. */ void OnCustomValueButtonToggled(bool checked); private: /** @brief Check if selections is valid. */ void SelectionControl( unsigned int index, const mitk::DataNode* selection); /** @brief Enable buttons if data selction is valid. */ void EnableButtons(bool enable = true); /** @brief Mask an image with a given binary mask. Note that the input image and the mask image must be of the same size. */ itk::SmartPointer MaskImage(itk::SmartPointer referenceImage, itk::SmartPointer maskImage ); /** @brief Convert a surface into an binary image. */ itk::SmartPointer ConvertSurfaceToImage( itk::SmartPointer image, mitk::Surface::Pointer surface ); /** @brief Adds a new data object to the DataStorage.*/ void AddToDataStorage(mitk::DataStorage::Pointer dataStorage, itk::SmartPointer segmentation, const std::string& name, mitk::DataNode::Pointer parent = nullptr); Ui::QmitkImageMaskingWidgetControls* m_Controls; }; #endif diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkMorphologicalOperationsWidget.cpp b/Modules/SegmentationUI/SegmentationUtilities/QmitkMorphologicalOperationsWidget.cpp index b02a5ea938..ef4c3bc979 100644 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkMorphologicalOperationsWidget.cpp +++ b/Modules/SegmentationUI/SegmentationUtilities/QmitkMorphologicalOperationsWidget.cpp @@ -1,258 +1,254 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkMorphologicalOperationsWidget.h" #include #include -#include - #include static const char* const HelpText = "Select a segmentation above"; -QmitkMorphologicalOperationsWidget::QmitkMorphologicalOperationsWidget(mitk::DataStorage* dataStorage, - mitk::SliceNavigationController* timeNavigationController, - QWidget* parent) - : QmitkSegmentationUtilityWidget(timeNavigationController, parent) +QmitkMorphologicalOperationsWidget::QmitkMorphologicalOperationsWidget(mitk::DataStorage* dataStorage, QWidget* parent) + : QWidget(parent) { m_Controls = new Ui::QmitkMorphologicalOperationsWidgetControls; m_Controls->setupUi(this); m_Controls->dataSelectionWidget->SetDataStorage(dataStorage); m_Controls->dataSelectionWidget->AddDataSelection(QmitkDataSelectionWidget::SegmentationPredicate); m_Controls->dataSelectionWidget->SetHelpText(HelpText); connect(m_Controls->btnClosing, SIGNAL(clicked()), this, SLOT(OnClosingButtonClicked())); connect(m_Controls->btnOpening, SIGNAL(clicked()), this, SLOT(OnOpeningButtonClicked())); connect(m_Controls->btnDilatation, SIGNAL(clicked()), this, SLOT(OnDilatationButtonClicked())); connect(m_Controls->btnErosion, SIGNAL(clicked()), this, SLOT(OnErosionButtonClicked())); connect(m_Controls->btnFillHoles, SIGNAL(clicked()), this, SLOT(OnFillHolesButtonClicked())); connect(m_Controls->radioButtonMorphoCross, SIGNAL(clicked()), this, SLOT(OnRadioButtonsClicked())); connect(m_Controls->radioButtonMorphoBall, SIGNAL(clicked()), this, SLOT(OnRadioButtonsClicked())); connect(m_Controls->dataSelectionWidget, SIGNAL(SelectionChanged(unsigned int, const mitk::DataNode*)), this, SLOT(OnSelectionChanged(unsigned int, const mitk::DataNode*))); if (m_Controls->dataSelectionWidget->GetSelection(0).IsNotNull()) this->OnSelectionChanged(0, m_Controls->dataSelectionWidget->GetSelection(0)); } QmitkMorphologicalOperationsWidget::~QmitkMorphologicalOperationsWidget() { } void QmitkMorphologicalOperationsWidget::OnSelectionChanged(unsigned int, const mitk::DataNode*) { QmitkDataSelectionWidget* dataSelectionWidget = m_Controls->dataSelectionWidget; mitk::DataNode::Pointer node = dataSelectionWidget->GetSelection(0); if (node.IsNotNull()) { m_Controls->dataSelectionWidget->SetHelpText(""); this->EnableButtons(true); } else { m_Controls->dataSelectionWidget->SetHelpText(HelpText); this->EnableButtons(false); } } void QmitkMorphologicalOperationsWidget::EnableButtons(bool enable) { m_Controls->btnClosing->setEnabled(enable); m_Controls->btnDilatation->setEnabled(enable); m_Controls->btnErosion->setEnabled(enable); m_Controls->btnFillHoles->setEnabled(enable); m_Controls->btnOpening->setEnabled(enable); } void QmitkMorphologicalOperationsWidget::OnRadioButtonsClicked() { bool enable = m_Controls->radioButtonMorphoBall->isChecked(); m_Controls->sliderMorphFactor->setEnabled(enable); m_Controls->spinBoxMorphFactor->setEnabled(enable); } void QmitkMorphologicalOperationsWidget::OnClosingButtonClicked() { QApplication::setOverrideCursor(QCursor(Qt::BusyCursor)); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); QmitkDataSelectionWidget* dataSelectionWidget = m_Controls->dataSelectionWidget; mitk::DataNode::Pointer node = dataSelectionWidget->GetSelection(0); mitk::Image::Pointer image = static_cast(node->GetData()); mitk::MorphologicalOperations::StructuralElementType structuralElement = CreateStructerElement_UI(); try { int factor = m_Controls->spinBoxMorphFactor->isEnabled() ? m_Controls->spinBoxMorphFactor->value() : 1; mitk::MorphologicalOperations::Closing(image, factor, structuralElement); } catch (const itk::ExceptionObject& exception) { MITK_WARN << "Exception caught: " << exception.GetDescription(); QApplication::restoreOverrideCursor(); return; } node->SetData(image); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); QApplication::restoreOverrideCursor(); } void QmitkMorphologicalOperationsWidget::OnOpeningButtonClicked() { QApplication::setOverrideCursor(QCursor(Qt::BusyCursor)); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); QmitkDataSelectionWidget* dataSelectionWidget = m_Controls->dataSelectionWidget; mitk::DataNode::Pointer node = dataSelectionWidget->GetSelection(0); mitk::Image::Pointer image = static_cast(node->GetData()); mitk::MorphologicalOperations::StructuralElementType structuralElement = CreateStructerElement_UI(); try { int factor = m_Controls->spinBoxMorphFactor->isEnabled() ? m_Controls->spinBoxMorphFactor->value() : 1; mitk::MorphologicalOperations::Opening(image, factor, structuralElement); } catch (const itk::ExceptionObject& exception) { MITK_WARN << "Exception caught: " << exception.GetDescription(); QApplication::restoreOverrideCursor(); return; } node->SetData(image); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); QApplication::restoreOverrideCursor(); } void QmitkMorphologicalOperationsWidget::OnDilatationButtonClicked() { QApplication::setOverrideCursor(QCursor(Qt::BusyCursor)); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); QmitkDataSelectionWidget* dataSelectionWidget = m_Controls->dataSelectionWidget; mitk::DataNode::Pointer node = dataSelectionWidget->GetSelection(0); mitk::Image::Pointer image = static_cast(node->GetData()); mitk::MorphologicalOperations::StructuralElementType structuralElement = this->CreateStructerElement_UI(); try { int factor = m_Controls->spinBoxMorphFactor->isEnabled() ? m_Controls->spinBoxMorphFactor->value() : 1; mitk::MorphologicalOperations::Dilate(image, factor, structuralElement); } catch (const itk::ExceptionObject& exception) { MITK_WARN << "Exception caught: " << exception.GetDescription(); QApplication::restoreOverrideCursor(); return; } node->SetData(image); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); QApplication::restoreOverrideCursor(); } void QmitkMorphologicalOperationsWidget::OnErosionButtonClicked() { QApplication::setOverrideCursor(QCursor(Qt::BusyCursor)); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); QmitkDataSelectionWidget* dataSelectionWidget = m_Controls->dataSelectionWidget; mitk::DataNode::Pointer node = dataSelectionWidget->GetSelection(0); mitk::Image::Pointer image = static_cast(node->GetData()); mitk::MorphologicalOperations::StructuralElementType structuralElement = CreateStructerElement_UI(); try { int factor = m_Controls->spinBoxMorphFactor->isEnabled() ? m_Controls->spinBoxMorphFactor->value() : 1; mitk::MorphologicalOperations::Erode(image, factor, structuralElement); } catch (const itk::ExceptionObject& exception) { MITK_WARN << "Exception caught: " << exception.GetDescription(); QApplication::restoreOverrideCursor(); return; } node->SetData(image); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); QApplication::restoreOverrideCursor(); } void QmitkMorphologicalOperationsWidget::OnFillHolesButtonClicked() { QApplication::setOverrideCursor(QCursor(Qt::BusyCursor)); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); QmitkDataSelectionWidget* dataSelectionWidget = m_Controls->dataSelectionWidget; mitk::DataNode::Pointer node = dataSelectionWidget->GetSelection(0); mitk::Image::Pointer image = static_cast(node->GetData()); try { mitk::MorphologicalOperations::FillHoles(image); } catch (const itk::ExceptionObject& exception) { MITK_WARN << "Exception caught: " << exception.GetDescription(); QApplication::restoreOverrideCursor(); return; } node->SetData(image); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); QApplication::restoreOverrideCursor(); } mitk::MorphologicalOperations::StructuralElementType QmitkMorphologicalOperationsWidget::CreateStructerElement_UI() { bool ball = m_Controls->radioButtonMorphoBall->isChecked(); int accum_flag = 0; if(ball){ if(m_Controls->planeSelectionComboBox->currentIndex() == 0) accum_flag = mitk::MorphologicalOperations::Ball; // 3D Operation if(m_Controls->planeSelectionComboBox->currentIndex() == 1) accum_flag = mitk::MorphologicalOperations::Ball_Axial; // 2D Operation - Axial plane if(m_Controls->planeSelectionComboBox->currentIndex() == 2) accum_flag = mitk::MorphologicalOperations::Ball_Sagittal; // 2D Operation - Sagittal plane if(m_Controls->planeSelectionComboBox->currentIndex() == 3) accum_flag = mitk::MorphologicalOperations::Ball_Coronal; // 2D Operation - Coronal plane }else{ if(m_Controls->planeSelectionComboBox->currentIndex() == 0) accum_flag = mitk::MorphologicalOperations::Cross; if(m_Controls->planeSelectionComboBox->currentIndex() == 1) accum_flag = mitk::MorphologicalOperations::Cross_Axial; if(m_Controls->planeSelectionComboBox->currentIndex() == 2) accum_flag = mitk::MorphologicalOperations::Cross_Sagittal; if(m_Controls->planeSelectionComboBox->currentIndex() == 3) accum_flag = mitk::MorphologicalOperations::Cross_Coronal; } return (mitk::MorphologicalOperations::StructuralElementType)accum_flag; } diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkMorphologicalOperationsWidget.h b/Modules/SegmentationUI/SegmentationUtilities/QmitkMorphologicalOperationsWidget.h index 3d19b84668..5e3862e85e 100644 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkMorphologicalOperationsWidget.h +++ b/Modules/SegmentationUI/SegmentationUtilities/QmitkMorphologicalOperationsWidget.h @@ -1,61 +1,61 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkMorphologicalOperationsWidget_h #define QmitkMorphologicalOperationsWidget_h #include #include -#include +#include + +#include namespace Ui { class QmitkMorphologicalOperationsWidgetControls; } namespace mitk { class DataNode; class DataStorage; } /** \brief GUI class for morphological segmentation tools. */ -class MITKSEGMENTATIONUI_EXPORT QmitkMorphologicalOperationsWidget : public QmitkSegmentationUtilityWidget +class MITKSEGMENTATIONUI_EXPORT QmitkMorphologicalOperationsWidget : public QWidget { Q_OBJECT public: - explicit QmitkMorphologicalOperationsWidget(mitk::DataStorage* dataStorage, - mitk::SliceNavigationController* timeNavigationController, - QWidget* parent = nullptr); + explicit QmitkMorphologicalOperationsWidget(mitk::DataStorage* dataStorage, QWidget* parent = nullptr); ~QmitkMorphologicalOperationsWidget() override; public slots: void OnClosingButtonClicked(); void OnOpeningButtonClicked(); void OnDilatationButtonClicked(); void OnErosionButtonClicked(); void OnFillHolesButtonClicked(); void OnSelectionChanged(unsigned int index, const mitk::DataNode* selection); void OnRadioButtonsClicked(); protected: void EnableButtons(bool enable); private: Ui::QmitkMorphologicalOperationsWidgetControls* m_Controls; mitk::MorphologicalOperations::StructuralElementType CreateStructerElement_UI(); }; #endif diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkSegmentationUtilityWidget.cpp b/Modules/SegmentationUI/SegmentationUtilities/QmitkSegmentationUtilityWidget.cpp deleted file mode 100644 index 2389dda82b..0000000000 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkSegmentationUtilityWidget.cpp +++ /dev/null @@ -1,34 +0,0 @@ -/*============================================================================ - -The Medical Imaging Interaction Toolkit (MITK) - -Copyright (c) German Cancer Research Center (DKFZ) -All rights reserved. - -Use of this source code is governed by a 3-clause BSD license that can be -found in the LICENSE file. - -============================================================================*/ - -#include "QmitkSegmentationUtilityWidget.h" - -QmitkSegmentationUtilityWidget::QmitkSegmentationUtilityWidget(mitk::SliceNavigationController* timeNavigationController, QWidget* parent) - : QWidget(parent) -{ - this->SetTimeNavigationController(timeNavigationController); -} - -QmitkSegmentationUtilityWidget::~QmitkSegmentationUtilityWidget() -{ -} - -mitk::SliceNavigationController* QmitkSegmentationUtilityWidget::GetTimeNavigationController() const -{ - return m_TimeNavigationController; -} - -void QmitkSegmentationUtilityWidget::SetTimeNavigationController(mitk::SliceNavigationController* timeNavigationController) -{ - m_TimeNavigationController = timeNavigationController; - this->setEnabled(timeNavigationController != nullptr); -} diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkSegmentationUtilityWidget.h b/Modules/SegmentationUI/SegmentationUtilities/QmitkSegmentationUtilityWidget.h deleted file mode 100644 index d0328f9804..0000000000 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkSegmentationUtilityWidget.h +++ /dev/null @@ -1,53 +0,0 @@ -/*============================================================================ - -The Medical Imaging Interaction Toolkit (MITK) - -Copyright (c) German Cancer Research Center (DKFZ) -All rights reserved. - -Use of this source code is governed by a 3-clause BSD license that can be -found in the LICENSE file. - -============================================================================*/ - -#ifndef QmitkSegmentationUtilityWidget_h -#define QmitkSegmentationUtilityWidget_h - -#include - -#include - -namespace mitk -{ - class SliceNavigationController; -} - -/** \brief Base class for segmentation utility widgets that need access to the time navigation controller. - * - * Call GetTimeNavigationController() in your derived class to gain access to the time navigation controller. - * The time navigation controller is not not available at all times and hence this method can return nullptr. - */ -class MITKSEGMENTATIONUI_EXPORT QmitkSegmentationUtilityWidget : public QWidget -{ - Q_OBJECT - -public: - explicit QmitkSegmentationUtilityWidget(mitk::SliceNavigationController* timeNavigationController, QWidget* parent = nullptr); - ~QmitkSegmentationUtilityWidget() override; - - /** \brief Usually called only from QmitkSegmentationUtilitiesView::RenderWindowPartActivated() and QmitkSegmentationUtilitiesView::RenderWindowPartDeactivated(). - */ - void SetTimeNavigationController(mitk::SliceNavigationController* timeNavigationController); - -protected: - /** \brief Call this method to access the time navigation controller. - * - * \return Pointer to the time navigation controller or nullptr, if it is not available. - */ - mitk::SliceNavigationController* GetTimeNavigationController() const; - -private: - mitk::SliceNavigationController* m_TimeNavigationController; -}; - -#endif diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkSurfaceToImageWidget.cpp b/Modules/SegmentationUI/SegmentationUtilities/QmitkSurfaceToImageWidget.cpp index 2e0edecc2f..7e6ad451b1 100644 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkSurfaceToImageWidget.cpp +++ b/Modules/SegmentationUI/SegmentationUtilities/QmitkSurfaceToImageWidget.cpp @@ -1,170 +1,168 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkSurfaceToImageWidget.h" #include #include #include #include #include #include #include #include #include #include #include static const char* const HelpText = "Select an image and a surface above"; -QmitkSurfaceToImageWidget::QmitkSurfaceToImageWidget(mitk::DataStorage* dataStorage, - mitk::SliceNavigationController* timeNavigationController, - QWidget* parent) - : QmitkSegmentationUtilityWidget(timeNavigationController, parent) +QmitkSurfaceToImageWidget::QmitkSurfaceToImageWidget(mitk::DataStorage* dataStorage, QWidget* parent) + : QWidget(parent) { m_Controls = new Ui::QmitkSurfaceToImageWidgetControls; m_Controls->setupUi(this); m_Controls->dataSelectionWidget->SetDataStorage(dataStorage); m_Controls->dataSelectionWidget->AddDataSelection(QmitkDataSelectionWidget::ImageAndSegmentationPredicate); m_Controls->dataSelectionWidget->AddDataSelection(QmitkDataSelectionWidget::SurfacePredicate); m_Controls->dataSelectionWidget->SetHelpText(HelpText); this->EnableButtons(false); connect (m_Controls->btnSurface2Image, SIGNAL(pressed()), this, SLOT(OnSurface2ImagePressed())); connect(m_Controls->dataSelectionWidget, SIGNAL(SelectionChanged(unsigned int, const mitk::DataNode*)), this, SLOT(OnSelectionChanged(unsigned int, const mitk::DataNode*))); if( m_Controls->dataSelectionWidget->GetSelection(0).IsNotNull() && m_Controls->dataSelectionWidget->GetSelection(1).IsNotNull() ) { this->OnSelectionChanged(0, m_Controls->dataSelectionWidget->GetSelection(0)); } } QmitkSurfaceToImageWidget::~QmitkSurfaceToImageWidget() { } void QmitkSurfaceToImageWidget::EnableButtons(bool enable) { m_Controls->btnSurface2Image->setEnabled(enable); } void QmitkSurfaceToImageWidget::OnSelectionChanged(unsigned int, const mitk::DataNode*) { QmitkDataSelectionWidget* dataSelectionWidget = m_Controls->dataSelectionWidget; mitk::DataNode::Pointer imageNode = dataSelectionWidget->GetSelection(0); mitk::DataNode::Pointer surfaceNode = dataSelectionWidget->GetSelection(1); if (imageNode.IsNull() || surfaceNode.IsNull() ) { dataSelectionWidget->SetHelpText(HelpText); this->EnableButtons(false); } else { mitk::Image::Pointer image = dynamic_cast( dataSelectionWidget->GetSelection(0)->GetData() ); mitk::Surface::Pointer surface = dynamic_cast( dataSelectionWidget->GetSelection(1)->GetData() ); if( image->GetTimeSteps() != surface->GetTimeSteps() ) { dataSelectionWidget->SetHelpText("Image and surface are of different size"); this->EnableButtons(false); } else { dataSelectionWidget->SetHelpText(""); this->EnableButtons(); } } } void QmitkSurfaceToImageWidget::OnSurface2ImagePressed() { this->EnableButtons(false); QmitkDataSelectionWidget* dataSelectionWidget = m_Controls->dataSelectionWidget; mitk::Image::Pointer image = dynamic_cast( dataSelectionWidget->GetSelection(0)->GetData() ); mitk::Surface::Pointer surface = dynamic_cast( dataSelectionWidget->GetSelection(1)->GetData() ); if( image.IsNull() || surface.IsNull()) { MITK_ERROR << "Selection does not contain an image and/or a surface"; QMessageBox::information( this, "Surface To Image", "Selection does not contain an image and/or a surface", QMessageBox::Ok ); this->EnableButtons(); return; } mitk::Image::Pointer resultImage(nullptr); resultImage = this->ConvertSurfaceToImage( image, surface ); if( resultImage.IsNull() ) { MITK_ERROR << "Convert Surface to binary image failed"; QMessageBox::information( this, "Surface To Image", "Convert Surface to binary image failed", QMessageBox::Ok ); this->EnableButtons(); return; } //create name for result node std::string nameOfResultImage = dataSelectionWidget->GetSelection(0)->GetName(); nameOfResultImage.append("_"); nameOfResultImage.append(dataSelectionWidget->GetSelection(1)->GetName()); //create data node and add to data storage mitk::DataNode::Pointer resultNode = mitk::DataNode::New(); resultNode->SetData( resultImage ); resultNode->SetProperty("name", mitk::StringProperty::New(nameOfResultImage) ); // resultNode->SetProperty("binary", mitk::BoolProperty::New(true) ); auto dataStorage = dataSelectionWidget->GetDataStorage(); if (dataStorage.IsNull()) { std::string exception = "Cannot add result to the data storage. Data storage invalid."; MITK_ERROR << "Error converting surface to binary image: " << exception; QMessageBox::information(nullptr, "Error converting surface to binary image", QString::fromStdString(exception)); } dataStorage->Add(resultNode, dataSelectionWidget->GetSelection(0)); this->EnableButtons(); } mitk::LabelSetImage::Pointer QmitkSurfaceToImageWidget::ConvertSurfaceToImage( mitk::Image::Pointer image, mitk::Surface::Pointer surface ) { mitk::ProgressBar::GetInstance()->AddStepsToDo(2); mitk::ProgressBar::GetInstance()->Progress(); mitk::SurfaceToImageFilter::Pointer surfaceToImageFilter = mitk::SurfaceToImageFilter::New(); surfaceToImageFilter->MakeOutputBinaryOn(); surfaceToImageFilter->SetInput(surface); surfaceToImageFilter->SetImage(image); try { surfaceToImageFilter->Update(); } catch(itk::ExceptionObject& excpt) { MITK_ERROR << excpt.GetDescription(); return nullptr; } mitk::ProgressBar::GetInstance()->Progress(); mitk::Image::Pointer resultImage = surfaceToImageFilter->GetOutput(); mitk::LabelSetImage::Pointer multilabelImage = mitk::LabelSetImage::New(); multilabelImage->InitializeByLabeledImage(resultImage); return multilabelImage; } diff --git a/Modules/SegmentationUI/SegmentationUtilities/QmitkSurfaceToImageWidget.h b/Modules/SegmentationUI/SegmentationUtilities/QmitkSurfaceToImageWidget.h index 55e2178163..b218cf76c9 100644 --- a/Modules/SegmentationUI/SegmentationUtilities/QmitkSurfaceToImageWidget.h +++ b/Modules/SegmentationUI/SegmentationUtilities/QmitkSurfaceToImageWidget.h @@ -1,77 +1,75 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkSurfaceToImageWidget_h #define QmitkSurfaceToImageWidget_h #include -#include - #include "itkSmartPointer.h" +#include + namespace Ui { class QmitkSurfaceToImageWidgetControls; } namespace mitk { class DataNode; class DataStorage; class Surface; class Image; class LabelSetImage; } /*! \brief QmitkSurfaceToImageWidget The Tool converts a surface to a binary image. The Method requires a surface and an image, which header information defines the output image. The resulting binary image has the same dimension, size, and Geometry3D as the input image. */ -class MITKSEGMENTATIONUI_EXPORT QmitkSurfaceToImageWidget : public QmitkSegmentationUtilityWidget +class MITKSEGMENTATIONUI_EXPORT QmitkSurfaceToImageWidget : public QWidget { Q_OBJECT public: /** @brief Default constructor, including creation of GUI elements and signals/slots connections. */ - explicit QmitkSurfaceToImageWidget(mitk::DataStorage* dataStorage, - mitk::SliceNavigationController* timeNavigationController, - QWidget* parent = nullptr); + explicit QmitkSurfaceToImageWidget(mitk::DataStorage* dataStorage, QWidget* parent = nullptr); /** @brief Defaul destructor. */ ~QmitkSurfaceToImageWidget() override; private slots: /** @brief This slot is called if the selection in the workbench is changed. */ void OnSelectionChanged(unsigned int index, const mitk::DataNode* selection); /** @brief This slot is called if user activates the button to convert a surface into a binary image. */ void OnSurface2ImagePressed(); private: /** @brief Enable buttons if data selction is valid. */ void EnableButtons(bool enable = true); /** @brief Convert a surface into an binary image. */ itk::SmartPointer ConvertSurfaceToImage( itk::SmartPointer image, itk::SmartPointer surface ); Ui::QmitkSurfaceToImageWidgetControls* m_Controls; }; #endif diff --git a/Modules/SegmentationUI/files.cmake b/Modules/SegmentationUI/files.cmake index 31888eed64..fff1c66311 100644 --- a/Modules/SegmentationUI/files.cmake +++ b/Modules/SegmentationUI/files.cmake @@ -1,125 +1,123 @@ set(CPP_FILES Qmitk/QmitkSegWithPreviewToolGUIBase.cpp Qmitk/QmitkMultiLabelSegWithPreviewToolGUIBase.cpp Qmitk/QmitkBinaryThresholdToolGUIBase.cpp Qmitk/QmitkBinaryThresholdToolGUI.cpp Qmitk/QmitkBinaryThresholdULToolGUI.cpp Qmitk/QmitkConfirmSegmentationDialog.cpp Qmitk/QmitkCopyToClipBoardDialog.cpp Qmitk/QmitkDrawPaintbrushToolGUI.cpp Qmitk/QmitkErasePaintbrushToolGUI.cpp Qmitk/QmitkEditableContourToolGUIBase.cpp Qmitk/QmitkGrowCutToolGUI.cpp Qmitk/QmitkLiveWireTool2DGUI.cpp Qmitk/QmitkLassoToolGUI.cpp Qmitk/QmitkOtsuTool3DGUI.cpp Qmitk/QmitkPaintbrushToolGUI.cpp Qmitk/QmitkPickingToolGUI.cpp Qmitk/QmitkSlicesInterpolator.cpp Qmitk/QmitkToolGUI.cpp Qmitk/QmitkToolGUIArea.cpp Qmitk/QmitkToolSelectionBox.cpp Qmitk/QmitknnUNetFolderParser.cpp Qmitk/QmitknnUNetToolGUI.cpp Qmitk/QmitknnUNetWorker.cpp Qmitk/QmitknnUNetGPU.cpp Qmitk/QmitkSurfaceStampWidget.cpp Qmitk/QmitkMaskStampWidget.cpp Qmitk/QmitkStaticDynamicSegmentationDialog.cpp Qmitk/QmitkSimpleLabelSetListWidget.cpp Qmitk/QmitkSegmentationTaskListWidget.cpp Qmitk/QmitkTotalSegmentatorToolGUI.cpp Qmitk/QmitkSetupVirtualEnvUtil.cpp Qmitk/QmitkMultiLabelInspector.cpp Qmitk/QmitkMultiLabelManager.cpp Qmitk/QmitkMultiLabelTreeModel.cpp Qmitk/QmitkMultiLabelTreeView.cpp Qmitk/QmitkMultiLabelPresetHelper.cpp Qmitk/QmitkLabelColorItemDelegate.cpp Qmitk/QmitkLabelToggleItemDelegate.cpp Qmitk/QmitkFindSegmentationTaskDialog.cpp SegmentationUtilities/QmitkBooleanOperationsWidget.cpp SegmentationUtilities/QmitkContourModelToImageWidget.cpp SegmentationUtilities/QmitkImageMaskingWidget.cpp SegmentationUtilities/QmitkMorphologicalOperationsWidget.cpp SegmentationUtilities/QmitkSurfaceToImageWidget.cpp - SegmentationUtilities/QmitkSegmentationUtilityWidget.cpp SegmentationUtilities/QmitkDataSelectionWidget.cpp ) set(H_FILES Qmitk/QmitkMultiLabelPresetHelper.h ) set(MOC_H_FILES Qmitk/QmitkSegWithPreviewToolGUIBase.h Qmitk/QmitkMultiLabelSegWithPreviewToolGUIBase.h Qmitk/QmitkBinaryThresholdToolGUIBase.h Qmitk/QmitkBinaryThresholdToolGUI.h Qmitk/QmitkBinaryThresholdULToolGUI.h Qmitk/QmitkConfirmSegmentationDialog.h Qmitk/QmitkCopyToClipBoardDialog.h Qmitk/QmitkDrawPaintbrushToolGUI.h Qmitk/QmitkErasePaintbrushToolGUI.h Qmitk/QmitkEditableContourToolGUIBase.h Qmitk/QmitkGrowCutToolGUI.h Qmitk/QmitkLiveWireTool2DGUI.h Qmitk/QmitkLassoToolGUI.h Qmitk/QmitkOtsuTool3DGUI.h Qmitk/QmitkPaintbrushToolGUI.h Qmitk/QmitkPickingToolGUI.h Qmitk/QmitkSlicesInterpolator.h Qmitk/QmitkToolGUI.h Qmitk/QmitkToolGUIArea.h Qmitk/QmitkToolSelectionBox.h Qmitk/QmitknnUNetFolderParser.h Qmitk/QmitknnUNetToolGUI.h Qmitk/QmitknnUNetGPU.h Qmitk/QmitknnUNetWorker.h Qmitk/QmitknnUNetEnsembleLayout.h Qmitk/QmitkSurfaceStampWidget.h Qmitk/QmitkMaskStampWidget.h Qmitk/QmitkStaticDynamicSegmentationDialog.h Qmitk/QmitkSimpleLabelSetListWidget.h Qmitk/QmitkSegmentationTaskListWidget.h Qmitk/QmitkTotalSegmentatorToolGUI.h Qmitk/QmitkSetupVirtualEnvUtil.h Qmitk/QmitkMultiLabelInspector.h Qmitk/QmitkMultiLabelManager.h Qmitk/QmitkMultiLabelTreeModel.h Qmitk/QmitkMultiLabelTreeView.h Qmitk/QmitkLabelColorItemDelegate.h Qmitk/QmitkLabelToggleItemDelegate.h Qmitk/QmitkFindSegmentationTaskDialog.h SegmentationUtilities/QmitkBooleanOperationsWidget.h SegmentationUtilities/QmitkContourModelToImageWidget.h SegmentationUtilities/QmitkImageMaskingWidget.h SegmentationUtilities/QmitkMorphologicalOperationsWidget.h SegmentationUtilities/QmitkSurfaceToImageWidget.h - SegmentationUtilities/QmitkSegmentationUtilityWidget.h SegmentationUtilities/QmitkDataSelectionWidget.h ) set(UI_FILES Qmitk/QmitkConfirmSegmentationDialog.ui Qmitk/QmitkGrowCutToolWidgetControls.ui Qmitk/QmitkOtsuToolWidgetControls.ui Qmitk/QmitkSurfaceStampWidgetGUIControls.ui Qmitk/QmitkMaskStampWidgetGUIControls.ui Qmitk/QmitknnUNetToolGUIControls.ui Qmitk/QmitkEditableContourToolGUIControls.ui Qmitk/QmitkSegmentationTaskListWidget.ui Qmitk/QmitkTotalSegmentatorGUIControls.ui Qmitk/QmitkMultiLabelInspectorControls.ui Qmitk/QmitkMultiLabelManagerControls.ui Qmitk/QmitkFindSegmentationTaskDialog.ui SegmentationUtilities/QmitkBooleanOperationsWidgetControls.ui SegmentationUtilities/QmitkContourModelToImageWidgetControls.ui SegmentationUtilities/QmitkImageMaskingWidgetControls.ui SegmentationUtilities/QmitkMorphologicalOperationsWidgetControls.ui SegmentationUtilities/QmitkSurfaceToImageWidgetControls.ui SegmentationUtilities/QmitkDataSelectionWidgetControls.ui ) set(QRC_FILES resources/SegmentationUI.qrc ) diff --git a/Plugins/org.mitk.gui.common/src/mitkIRenderWindowPart.h b/Plugins/org.mitk.gui.common/src/mitkIRenderWindowPart.h index f8726b2183..38bd85cbb5 100644 --- a/Plugins/org.mitk.gui.common/src/mitkIRenderWindowPart.h +++ b/Plugins/org.mitk.gui.common/src/mitkIRenderWindowPart.h @@ -1,230 +1,230 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkIRenderWindowPart_h #define mitkIRenderWindowPart_h #include #include #include #include #include #include #include #include class QmitkRenderWindow; namespace mitk { struct IRenderingManager; -class SliceNavigationController; +class TimeNavigationController; /** * \ingroup org_mitk_gui_common * * \brief Interface for a MITK Workbench Part providing a render window. * * This interface allows generic access to Workbench parts which provide some * kind of render window. The interface is intended to be implemented by * subclasses of berry::IWorkbenchPart. Usually, the interface is implemented * by a Workbench editor. * * A IRenderWindowPart provides zero or more QmitkRenderWindow instances which can * be controlled via this interface. QmitkRenderWindow instances have an associated * \e id, which is implementation specific. * Additionally the defined values Axial, Sagittal, Coronal and Original from mitk::AnatomicalPlane * can be used to retrieve a specific QmitkRenderWindow. * * \see ILinkedRenderWindowPart * \see IRenderWindowPartListener * \see QmitkAbstractRenderEditor */ struct MITK_GUI_COMMON_PLUGIN IRenderWindowPart { static const QString DECORATION_BORDER; // = "border" static const QString DECORATION_LOGO; // = "logo" static const QString DECORATION_MENU; // = "menu" static const QString DECORATION_BACKGROUND; // = "background" static const QString DECORATION_CORNER_ANNOTATION; // = "corner annotation" virtual ~IRenderWindowPart(); /** * Get the currently active (focused) render window. * Focus handling is implementation specific. * * \return The active QmitkRenderWindow instance; nullptr * if no render window is active. */ virtual QmitkRenderWindow* GetActiveQmitkRenderWindow() const = 0; /** * Get all render windows with their ids. * * \return A hash map mapping the render window id to the QmitkRenderWindow instance. */ virtual QHash GetQmitkRenderWindows() const = 0; /** * Get a render window with a specific id. * * \param id The render window id. * \return The QmitkRenderWindow instance for id */ virtual QmitkRenderWindow* GetQmitkRenderWindow(const QString& id) const = 0; /** * Get a render window with a specific plane orientation. * * \param orientation The render window plane orientation. * \return The QmitkRenderWindow instance for orientation */ virtual QmitkRenderWindow* GetQmitkRenderWindow(const mitk::AnatomicalPlane& orientation) const = 0; /** * Get the rendering manager used by this render window part. * * \return The current IRenderingManager instance or nullptr * if no rendering manager is used. */ virtual mitk::IRenderingManager* GetRenderingManager() const = 0; /** * Request an update of all render windows. * * \param requestType Specifies the type of render windows for which an update * will be requested. */ virtual void RequestUpdate(mitk::RenderingManager::RequestType requestType = mitk::RenderingManager::REQUEST_UPDATE_ALL) = 0; /** * Force an immediate update of all render windows. * * \param requestType Specifies the type of render windows for which an immediate update * will be requested. */ virtual void ForceImmediateUpdate(mitk::RenderingManager::RequestType requestType = mitk::RenderingManager::REQUEST_UPDATE_ALL) = 0; /** * @brief Initialize the render windows of this render window part to the given geometry. * * @param geometry The geometry to be used to initialize / update a * render window's time and slice navigation controller. * @param resetCamera If true, the camera and crosshair will be reset to the default view (centered, no zoom). * If false, the current crosshair position and the camera zoom will be stored and reset * after the reference geometry has been updated. */ virtual void InitializeViews(const mitk::TimeGeometry* geometry, bool resetCamera) = 0; /** * @brief Define the reference geometry for interaction withing a render window. * * The concrete implementation is subclass-specific, no default implementation is provided here. * An implementation can be found in 'QmitkAbstractMultiWidgetEditor' and will just * forward the argument to the contained multi widget. * * @param referenceGeometry The interaction reference geometry for the concrete multi widget. * For more details, see 'BaseRenderer::SetInteractionReferenceGeometry'. */ virtual void SetInteractionReferenceGeometry(const mitk::TimeGeometry* referenceGeometry) = 0; /** * @brief Returns true if the render windows are coupled; false if not. * * Render windows are coupled if the slice navigation controller of the render windows * are connected which means that always the same geometry is used for the render windows. */ virtual bool HasCoupledRenderWindows() const = 0; /** - * Get the SliceNavigationController for controlling time positions. + * Get the TimeNavigationController for controlling time positions. * - * \return A SliceNavigationController if the render window supports this + * \return A TimeNavigationController if the render window supports this * operation; otherwise returns nullptr. */ - virtual mitk::SliceNavigationController* GetTimeNavigationController() const = 0; + virtual mitk::TimeNavigationController* GetTimeNavigationController() const = 0; /** * Get the selected position in the render window with id id * or in the active render window if id is an empty string. * * \param id The render window id. * \return The currently selected position in world coordinates. */ virtual mitk::Point3D GetSelectedPosition(const QString& id = QString()) const = 0; /** * Set the selected position in the render window with id id * or in the active render window if id is nullptr. * * \param pos The position in world coordinates which should be selected. * \param id The render window id in which the selection should take place. */ virtual void SetSelectedPosition(const mitk::Point3D& pos, const QString& id = QString()) = 0; /** * Get the time point selected in the render window with id id * or in the active render window if id is an empty string. * * \param id The render window id. * \return The currently selected position in world coordinates. */ virtual TimePointType GetSelectedTimePoint(const QString& id = QString()) const = 0; /** * Enable \e decorations like colored borders, menu widgets, logos, text annotations, etc. * * Decorations are implementation specific. A set of standardized decoration names is listed * in GetDecorations(). * * \param enable If true enable the decorations specified in decorations, * otherwise disable them. * \param decorations A list of decoration names. If empty, all supported decorations are affected. * * \see GetDecorations() */ virtual void EnableDecorations(bool enable, const QStringList& decorations = QStringList()) = 0; /** * Return if a specific decoration is enabled. * * \return true if the decoration is enabled, false if it is disabled * or unknown. * * \see GetDecorations() */ virtual bool IsDecorationEnabled(const QString& decoration) const = 0; /** * Get a list of supported decorations. * * The following decoration names are standardized and should not be used for other decoration types: *
    *
  • \e DECORATION_BORDER Any border decorations like colored rectangles, etc. *
  • \e DECORATION_MENU Menus associated with render windows *
  • \e DECORATION_BACKGROUND All kinds of backgrounds (patterns, gradients, etc.) except for solid colored backgrounds *
  • \e DECORATION_LOGO Any kind of logo overlayed on the rendered scene *
* * \return A list of supported decoration names. */ virtual QStringList GetDecorations() const = 0; }; } Q_DECLARE_INTERFACE(mitk::IRenderWindowPart, "org.mitk.ui.IRenderWindowPart") #endif diff --git a/Plugins/org.mitk.gui.common/src/mitkIRenderingManager.cpp b/Plugins/org.mitk.gui.common/src/mitkIRenderingManager.cpp index f161ae9e2f..78d48b5cf9 100644 --- a/Plugins/org.mitk.gui.common/src/mitkIRenderingManager.cpp +++ b/Plugins/org.mitk.gui.common/src/mitkIRenderingManager.cpp @@ -1,179 +1,179 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkIRenderingManager.h" namespace mitk { struct RenderingManagerInterface : public IRenderingManager { RenderingManagerInterface(RenderingManager::Pointer manager) : m_RM(manager) {} QList GetAllRegisteredVtkRenderWindows() const override { RenderingManager::RenderWindowVector vec(m_RM->GetAllRegisteredRenderWindows()); QList result; for (auto i = vec.begin(); i != vec.end(); ++i) { result.append(*i); } return result; } void RequestUpdate( vtkRenderWindow *renderWindow ) override { m_RM->RequestUpdate(renderWindow); } void ForceImmediateUpdate( vtkRenderWindow *renderWindow ) override { m_RM->ForceImmediateUpdate(renderWindow); } void RequestUpdateAll( RenderingManager::RequestType type ) override { m_RM->RequestUpdateAll(type); } void ForceImmediateUpdateAll( RenderingManager::RequestType type ) override { m_RM->ForceImmediateUpdateAll(type); } bool InitializeViews( const BaseGeometry *geometry, RenderingManager::RequestType type = RenderingManager::REQUEST_UPDATE_ALL, bool preserveRoughOrientationInWorldSpace = false ) override { return m_RM->InitializeViews( geometry, type, preserveRoughOrientationInWorldSpace); } bool InitializeViews( const TimeGeometry *geometry, RenderingManager::RequestType type = RenderingManager::REQUEST_UPDATE_ALL, bool preserveRoughOrientationInWorldSpace = false ) override { return m_RM->InitializeViews( geometry, type, preserveRoughOrientationInWorldSpace); } bool InitializeViews( RenderingManager::RequestType type ) override { return m_RM->InitializeViews(type); } bool InitializeView( vtkRenderWindow *renderWindow, const BaseGeometry *geometry, bool initializeGlobalTimeSNC = false) override { return m_RM->InitializeView(renderWindow, geometry, initializeGlobalTimeSNC); } bool InitializeView( vtkRenderWindow *renderWindow ) override { return m_RM->InitializeView(renderWindow); } - const SliceNavigationController *GetTimeNavigationController() const override + const TimeNavigationController* GetTimeNavigationController() const override { return m_RM->GetTimeNavigationController(); } - SliceNavigationController *GetTimeNavigationController() override + TimeNavigationController* GetTimeNavigationController() override { return m_RM->GetTimeNavigationController(); } bool IsRendering() const override { return m_RM->IsRendering(); } void AbortRendering() override { m_RM->AbortRendering(); } void SetLODIncreaseBlocked(bool blocked) override { m_RM->SetLODIncreaseBlocked(blocked); } bool GetLODIncreaseBlocked() const override { return m_RM->GetLODIncreaseBlocked(); } void SetLODAbortMechanismEnabled(bool abort) override { m_RM->SetLODAbortMechanismEnabled(abort); } bool GetLODAbortMechanismEnabled() const override { return m_RM->GetLODAbortMechanismEnabled(); } int GetNextLOD( BaseRenderer* renderer ) const override { return m_RM->GetNextLOD(renderer); } void SetMaximumLOD( unsigned int max ) override { m_RM->SetMaximumLOD(max); } void SetShading( bool state, unsigned int lod ) override { m_RM->SetShading(state, lod); } bool GetShading( unsigned int lod ) override { return m_RM->GetShading(lod); } void SetClippingPlaneStatus( bool status ) override { m_RM->SetClippingPlaneStatus(status); } bool GetClippingPlaneStatus() override { return m_RM->GetClippingPlaneStatus(); } void SetShadingValues( float ambient, float diffuse, float specular, float specpower ) override { m_RM->SetShadingValues(ambient, diffuse, specular, specpower); } QList GetShadingValues() const override { RenderingManager::FloatVector vec(m_RM->GetShadingValues()); QList result; for (auto i = vec.begin(); i != vec.end(); ++i) { result.push_back(*i); } return result; } const RenderingManager::Pointer m_RM; }; IRenderingManager* MakeRenderingManagerInterface(RenderingManager::Pointer manager) { return new RenderingManagerInterface(manager); } } diff --git a/Plugins/org.mitk.gui.common/src/mitkIRenderingManager.h b/Plugins/org.mitk.gui.common/src/mitkIRenderingManager.h index 38c959f376..34dfd88e42 100644 --- a/Plugins/org.mitk.gui.common/src/mitkIRenderingManager.h +++ b/Plugins/org.mitk.gui.common/src/mitkIRenderingManager.h @@ -1,144 +1,144 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkIRenderingManager_h #define mitkIRenderingManager_h #include #include #include #include namespace mitk { /** * \ingroup org_mitk_gui_common * * \brief An interface for accessing a mitk::RenderingManager instance. * * This interface acts as a wrapper to a mitk::RenderingManager instance, hiding some * methods from the user. * * \see MakeRenderingManagerInterface */ struct IRenderingManager { virtual ~IRenderingManager() {} /** Get a list of all registered RenderWindows */ virtual QList GetAllRegisteredVtkRenderWindows() const = 0; /** * Requests an update for the specified RenderWindow, to be executed as * soon as the main loop is ready for rendering. */ virtual void RequestUpdate( vtkRenderWindow *renderWindow ) = 0; /** Immediately executes an update of the specified RenderWindow. */ virtual void ForceImmediateUpdate( vtkRenderWindow *renderWindow ) = 0; /** * Requests all currently registered RenderWindows to be updated. * If only 2D or 3D windows should be updated, this can be specified * via the parameter requestType. */ virtual void RequestUpdateAll( RenderingManager::RequestType type = RenderingManager::REQUEST_UPDATE_ALL ) = 0; /** * Immediately executes an update of all registered RenderWindows. * If only 2D or 3D windows should be updated, this can be specified * via the parameter requestType. */ virtual void ForceImmediateUpdateAll( RenderingManager::RequestType type = RenderingManager::REQUEST_UPDATE_ALL ) = 0; /** Initializes the windows specified by requestType to the given geometry. */ virtual bool InitializeViews( const BaseGeometry *geometry, RenderingManager::RequestType type = RenderingManager::REQUEST_UPDATE_ALL, bool preserveRoughOrientationInWorldSpace = false ) = 0; virtual bool InitializeViews( const TimeGeometry *geometry, RenderingManager::RequestType type = RenderingManager::REQUEST_UPDATE_ALL, bool preserveRoughOrientationInWorldSpace = false ) = 0; /** * Initializes the windows to the default viewing direction * (geomtry information is NOT changed). */ virtual bool InitializeViews( RenderingManager::RequestType type = RenderingManager::REQUEST_UPDATE_ALL ) = 0; /** * Initializes the specified window to the given geometry. Set * "initializeGlobalTimeSNC" to true in order to use this geometry as * global TimeGeometry. */ virtual bool InitializeView( vtkRenderWindow *renderWindow, const BaseGeometry *geometry, bool initializeGlobalTimeSNC = false) = 0; /** * Initializes the specified window to the default viewing direction * (geomtry information is NOT changed). */ virtual bool InitializeView( vtkRenderWindow *renderWindow ) = 0; - /** Gets the SliceNavigationController responsible for time-slicing. */ - virtual const SliceNavigationController *GetTimeNavigationController() const = 0; + /** Gets the TimeNavigationController responsible for time-slicing. */ + virtual const TimeNavigationController*GetTimeNavigationController() const = 0; - /** Gets the SliceNavigationController responsible for time-slicing. */ - virtual SliceNavigationController *GetTimeNavigationController() = 0; + /** Gets the TimeNavigationController responsible for time-slicing. */ + virtual TimeNavigationController*GetTimeNavigationController() = 0; virtual bool IsRendering() const = 0; virtual void AbortRendering() = 0; /** En-/Disable LOD increase globally. */ virtual void SetLODIncreaseBlocked(bool blocked) = 0; /** Get LOD blocked status. */ virtual bool GetLODIncreaseBlocked() const = 0; /** En-/Disable LOD abort mechanism. */ virtual void SetLODAbortMechanismEnabled(bool abort) = 0; /** Get LOD abort mechanism status. */ virtual bool GetLODAbortMechanismEnabled() const = 0; virtual int GetNextLOD( BaseRenderer* renderer ) const = 0; /** Set current LOD (nullptr means all renderers)*/ virtual void SetMaximumLOD( unsigned int max ) = 0; virtual void SetShading( bool state, unsigned int lod ) = 0; virtual bool GetShading( unsigned int lod ) = 0; virtual void SetClippingPlaneStatus( bool status ) = 0; virtual bool GetClippingPlaneStatus() = 0; virtual void SetShadingValues( float ambient, float diffuse, float specular, float specpower ) = 0; virtual QList GetShadingValues() const = 0; }; } Q_DECLARE_INTERFACE(mitk::IRenderingManager, "org.mitk.ui.IRenderingManager") namespace mitk { /** * Create a IRenderManager interface for a given RenderingManager. Ownership of the * returned pointer is transferred to the caller of this function. * * \param manager The RenderingManager instance for which to create a interface. * \return A pointer to the interface object. The caller is responsible for deleting the pointer. */ MITK_GUI_COMMON_PLUGIN IRenderingManager* MakeRenderingManagerInterface(RenderingManager::Pointer manager); } #endif diff --git a/Plugins/org.mitk.gui.qt.application/src/QmitkDataNodeResetGeometryAction.cpp b/Plugins/org.mitk.gui.qt.application/src/QmitkDataNodeResetGeometryAction.cpp index 25cdf72dc0..49aabdb6f1 100644 --- a/Plugins/org.mitk.gui.qt.application/src/QmitkDataNodeResetGeometryAction.cpp +++ b/Plugins/org.mitk.gui.qt.application/src/QmitkDataNodeResetGeometryAction.cpp @@ -1,113 +1,113 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include // mitk core #include #include // mitk gui common plugin #include // namespace that contains the concrete action namespace ResetGeometryAction { void Run(berry::IWorkbenchPartSite::Pointer workbenchPartSite, const mitk::TimeGeometry* referenceGeometry, mitk::BaseRenderer* baseRenderer /*= nullptr*/) { if (workbenchPartSite.IsNull()) { return; } auto* renderWindowPart = mitk::WorkbenchUtil::GetRenderWindowPart(workbenchPartSite->GetPage(), mitk::WorkbenchUtil::NONE); if (nullptr == renderWindowPart) { renderWindowPart = mitk::WorkbenchUtil::OpenRenderWindowPart(workbenchPartSite->GetPage(), false); if (nullptr == renderWindowPart) { // no render window available return; } } if (nullptr == referenceGeometry) { return; } mitk::TimeStepType imageTimeStep = 0; // store the current position to set it again later, if the camera should not be reset mitk::Point3D currentPosition = renderWindowPart->GetSelectedPosition(); // store the current time step to set it again later, if the camera should not be reset auto* renderingManager = mitk::RenderingManager::GetInstance(); - const auto currentTimePoint = renderingManager->GetTimeNavigationController()->GetSelectedTimePoint(); + const mitk::TimePointType currentTimePoint = renderingManager->GetTimeNavigationController()->GetSelectedTimePoint(); if (referenceGeometry->IsValidTimePoint(currentTimePoint)) { imageTimeStep = referenceGeometry->TimePointToTimeStep(currentTimePoint); } if (nullptr == baseRenderer) { renderingManager->InitializeViews(referenceGeometry, mitk::RenderingManager::REQUEST_UPDATE_ALL, false); } else { renderingManager->InitializeView(baseRenderer->GetRenderWindow(), referenceGeometry, false); } renderWindowPart->SetSelectedPosition(currentPosition); - renderingManager->GetTimeNavigationController()->GetTime()->SetPos(imageTimeStep); + renderingManager->GetTimeNavigationController()->GetStepper()->SetPos(imageTimeStep); } } // namespace ResetGeometryAction QmitkDataNodeResetGeometryAction::QmitkDataNodeResetGeometryAction(QWidget* parent, berry::IWorkbenchPartSite::Pointer workbenchpartSite) : QAction(parent) , QmitkAbstractDataNodeAction(workbenchpartSite) { this->setText(tr("Reset geometry")); this->InitializeAction(); } QmitkDataNodeResetGeometryAction::QmitkDataNodeResetGeometryAction(QWidget* parent, berry::IWorkbenchPartSite* workbenchpartSite) : QmitkDataNodeResetGeometryAction(parent, berry::IWorkbenchPartSite::Pointer(workbenchpartSite)) { } void QmitkDataNodeResetGeometryAction::InitializeAction() { connect(this, &QmitkDataNodeResetGeometryAction::triggered, this, &QmitkDataNodeResetGeometryAction::OnActionTriggered); } void QmitkDataNodeResetGeometryAction::OnActionTriggered(bool /*checked*/) { auto workbenchPartSite = m_WorkbenchPartSite.Lock(); if (workbenchPartSite.IsNull()) { return; } auto baseRenderer = this->GetBaseRenderer(); auto selectedNode = this->GetSelectedNode(); mitk::Image::ConstPointer selectedImage = dynamic_cast(selectedNode->GetData()); if (selectedImage.IsNull()) { return; } ResetGeometryAction::Run(workbenchPartSite, selectedImage->GetTimeGeometry(), baseRenderer); } diff --git a/Plugins/org.mitk.gui.qt.basicimageprocessing/src/internal/QmitkBasicImageProcessingView.cpp b/Plugins/org.mitk.gui.qt.basicimageprocessing/src/internal/QmitkBasicImageProcessingView.cpp index 20fc78bccc..69d285a9db 100644 --- a/Plugins/org.mitk.gui.qt.basicimageprocessing/src/internal/QmitkBasicImageProcessingView.cpp +++ b/Plugins/org.mitk.gui.qt.basicimageprocessing/src/internal/QmitkBasicImageProcessingView.cpp @@ -1,1345 +1,1342 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkBasicImageProcessingView.h" // QT includes (GUI) #include #include #include #include #include #include #include // MITK includes (general) #include #include #include #include #include #include #include #include #include #include +#include // Includes for image casting between ITK and MITK #include #include // ITK includes (general) #include #include // Morphological Operations #include #include #include #include #include // Smoothing #include #include #include // Threshold #include // Inversion #include // Derivatives #include #include #include // Resampling #include #include #include #include #include // Image Arithmetics #include #include #include #include // Boolean operations #include #include #include // Flip Image #include #include #include // Convenient Definitions typedef itk::Image ImageType; typedef itk::Image SegmentationImageType; typedef itk::Image DoubleImageType; typedef itk::Image, 3> VectorImageType; typedef itk::BinaryBallStructuringElement BallType; typedef itk::GrayscaleDilateImageFilter DilationFilterType; typedef itk::GrayscaleErodeImageFilter ErosionFilterType; typedef itk::GrayscaleMorphologicalOpeningImageFilter OpeningFilterType; typedef itk::GrayscaleMorphologicalClosingImageFilter ClosingFilterType; typedef itk::MedianImageFilter< ImageType, ImageType > MedianFilterType; typedef itk::DiscreteGaussianImageFilter< ImageType, ImageType> GaussianFilterType; typedef itk::TotalVariationDenoisingImageFilter TotalVariationFilterType; typedef itk::TotalVariationDenoisingImageFilter VectorTotalVariationFilterType; typedef itk::BinaryThresholdImageFilter< ImageType, ImageType > ThresholdFilterType; typedef itk::InvertIntensityImageFilter< ImageType, ImageType > InversionFilterType; typedef itk::GradientMagnitudeRecursiveGaussianImageFilter< ImageType, ImageType > GradientFilterType; typedef itk::LaplacianImageFilter< DoubleImageType, DoubleImageType > LaplacianFilterType; typedef itk::SobelEdgeDetectionImageFilter< DoubleImageType, DoubleImageType > SobelFilterType; typedef itk::ResampleImageFilter< ImageType, ImageType > ResampleImageFilterType; typedef itk::ResampleImageFilter< ImageType, ImageType > ResampleImageFilterType2; typedef itk::CastImageFilter< ImageType, DoubleImageType > ImagePTypeToFloatPTypeCasterType; typedef itk::AddImageFilter< ImageType, ImageType, ImageType > AddFilterType; typedef itk::SubtractImageFilter< ImageType, ImageType, ImageType > SubtractFilterType; typedef itk::MultiplyImageFilter< ImageType, ImageType, ImageType > MultiplyFilterType; typedef itk::DivideImageFilter< ImageType, ImageType, DoubleImageType > DivideFilterType; typedef itk::OrImageFilter< ImageType, ImageType > OrImageFilterType; typedef itk::AndImageFilter< ImageType, ImageType > AndImageFilterType; typedef itk::XorImageFilter< ImageType, ImageType > XorImageFilterType; typedef itk::FlipImageFilter< ImageType > FlipImageFilterType; typedef itk::LinearInterpolateImageFunction< ImageType, double > LinearInterpolatorType; typedef itk::NearestNeighborInterpolateImageFunction< ImageType, double > NearestInterpolatorType; const std::string QmitkBasicImageProcessing::VIEW_ID = "org.mitk.views.basicimageprocessing"; QmitkBasicImageProcessing::QmitkBasicImageProcessing() : QmitkAbstractView() , m_Controls(new Ui::QmitkBasicImageProcessingViewControls) , m_TimeStepperAdapter(nullptr) { auto isImage = mitk::TNodePredicateDataType::New(); auto isNotHelperObject = mitk::NodePredicateNot::New( mitk::NodePredicateProperty::New("helper object", mitk::BoolProperty::New(true))); auto dimensionPredicate = mitk::NodePredicateOr::New( mitk::NodePredicateDimension::New(3), mitk::NodePredicateDimension::New(4)); m_IsImagePredicate = mitk::NodePredicateAnd::New( isImage, isNotHelperObject, dimensionPredicate); } QmitkBasicImageProcessing::~QmitkBasicImageProcessing() { } void QmitkBasicImageProcessing::CreateQtPartControl(QWidget *parent) { m_Controls->setupUi(parent); m_Controls->selectedImageWidget->SetDataStorage(this->GetDataStorage()); m_Controls->selectedImageWidget->SetNodePredicate(m_IsImagePredicate); m_Controls->selectedImageWidget->SetSelectionIsOptional(true); m_Controls->selectedImageWidget->SetAutoSelectNewNodes(true); m_Controls->selectedImageWidget->SetEmptyInfo(QString("Please select a 3D / 4D image")); m_Controls->selectedImageWidget->SetPopUpTitel(QString("Select an image")); m_Controls->selectedImageWidget_2->SetDataStorage(this->GetDataStorage()); m_Controls->selectedImageWidget_2->SetNodePredicate(m_IsImagePredicate); m_Controls->selectedImageWidget_2->SetSelectionIsOptional(true); m_Controls->selectedImageWidget_2->SetAutoSelectNewNodes(true); m_Controls->selectedImageWidget_2->SetEmptyInfo(QString("Please select a 3D / 4D image")); m_Controls->selectedImageWidget_2->SetPopUpTitel(QString("Select an image")); m_Controls->gbTwoImageOps->hide(); m_Controls->cbWhat1->clear(); m_Controls->cbWhat1->insertItem(NOACTIONSELECTED, "Please select an operation"); m_Controls->cbWhat1->insertItem(CATEGORY_DENOISING, "--- Denoising ---"); m_Controls->cbWhat1->insertItem(GAUSSIAN, "Gaussian"); m_Controls->cbWhat1->insertItem(MEDIAN, "Median"); m_Controls->cbWhat1->insertItem(TOTALVARIATION, "Total Variation"); m_Controls->cbWhat1->insertItem(CATEGORY_MORPHOLOGICAL, "--- Morphological ---"); m_Controls->cbWhat1->insertItem(DILATION, "Dilation"); m_Controls->cbWhat1->insertItem(EROSION, "Erosion"); m_Controls->cbWhat1->insertItem(OPENING, "Opening"); m_Controls->cbWhat1->insertItem(CLOSING, "Closing"); m_Controls->cbWhat1->insertItem(CATEGORY_EDGE_DETECTION, "--- Edge Detection ---"); m_Controls->cbWhat1->insertItem(GRADIENT, "Gradient"); m_Controls->cbWhat1->insertItem(LAPLACIAN, "Laplacian (2nd Derivative)"); m_Controls->cbWhat1->insertItem(SOBEL, "Sobel Operator"); m_Controls->cbWhat1->insertItem(CATEGORY_MISC, "--- Misc ---"); m_Controls->cbWhat1->insertItem(THRESHOLD, "Threshold"); m_Controls->cbWhat1->insertItem(INVERSION, "Image Inversion"); m_Controls->cbWhat1->insertItem(DOWNSAMPLING, "Downsampling"); m_Controls->cbWhat1->insertItem(FLIPPING, "Flipping"); m_Controls->cbWhat1->insertItem(RESAMPLING, "Resample to"); m_Controls->cbWhat1->insertItem(RESCALE, "Rescale values to interval"); m_Controls->cbWhat1->insertItem(RESCALE2, "Rescale values by scalar"); m_Controls->cbWhat2->clear(); m_Controls->cbWhat2->insertItem(TWOIMAGESNOACTIONSELECTED, "Please select an operation"); m_Controls->cbWhat2->insertItem(CATEGORY_ARITHMETIC, "--- Arithmetric operations ---"); m_Controls->cbWhat2->insertItem(ADD, "Add to Image 1:"); m_Controls->cbWhat2->insertItem(SUBTRACT, "Subtract from Image 1:"); m_Controls->cbWhat2->insertItem(MULTIPLY, "Multiply with Image 1:"); m_Controls->cbWhat2->insertItem(RESAMPLE_TO, "Resample Image 1 to fit geometry:"); m_Controls->cbWhat2->insertItem(DIVIDE, "Divide Image 1 by:"); m_Controls->cbWhat2->insertItem(CATEGORY_BOOLEAN, "--- Boolean operations ---"); m_Controls->cbWhat2->insertItem(AND, "AND"); m_Controls->cbWhat2->insertItem(OR, "OR"); m_Controls->cbWhat2->insertItem(XOR, "XOR"); m_Controls->cbParam4->clear(); m_Controls->cbParam4->insertItem(LINEAR, "Linear"); m_Controls->cbParam4->insertItem(NEAREST, "Nearest neighbor"); m_Controls->dsbParam1->hide(); m_Controls->dsbParam2->hide(); m_Controls->dsbParam3->hide(); m_Controls->tlParam3->hide(); m_Controls->tlParam4->hide(); m_Controls->cbParam4->hide(); this->CreateConnections(); } void QmitkBasicImageProcessing::CreateConnections() { connect(m_Controls->cbWhat1, QOverload::of(&QComboBox::activated), this, &QmitkBasicImageProcessing::SelectAction); connect(m_Controls->btnDoIt, &QPushButton::clicked, this, &QmitkBasicImageProcessing::StartButtonClicked); connect(m_Controls->cbWhat2, QOverload::of(&QComboBox::activated), this, &QmitkBasicImageProcessing::SelectAction2); connect(m_Controls->btnDoIt2, &QPushButton::clicked, this, &QmitkBasicImageProcessing::StartButton2Clicked); connect(m_Controls->rBOneImOp, &QRadioButton::clicked, this, &QmitkBasicImageProcessing::ChangeGUI); connect(m_Controls->rBTwoImOp, &QRadioButton::clicked, this, &QmitkBasicImageProcessing::ChangeGUI); connect(m_Controls->cbParam4, QOverload::of(&QComboBox::activated), this, &QmitkBasicImageProcessing::SelectInterpolator); connect(m_Controls->selectedImageWidget, &QmitkAbstractNodeSelectionWidget::CurrentSelectionChanged, this, &QmitkBasicImageProcessing::OnCurrentSelectionChanged); connect(m_Controls->selectedImageWidget_2, &QmitkAbstractNodeSelectionWidget::CurrentSelectionChanged, this, &QmitkBasicImageProcessing::OnCurrentSelectionChanged); } void QmitkBasicImageProcessing::InternalGetTimeNavigationController() { - auto renwin_part = GetRenderWindowPart(); - if( renwin_part != nullptr ) + auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + if (nullptr != timeNavigationController) { - auto tnc = renwin_part->GetTimeNavigationController(); - if( tnc != nullptr ) - { - m_TimeStepperAdapter = new QmitkStepperAdapter(m_Controls->timeSliceNavigationWidget, tnc->GetTime()); - } + m_TimeStepperAdapter = new QmitkStepperAdapter(m_Controls->timeSliceNavigationWidget, timeNavigationController->GetStepper()); } } void QmitkBasicImageProcessing::SetFocus() { m_Controls->rBOneImOp->setFocus(); } void QmitkBasicImageProcessing::OnCurrentSelectionChanged(const QList& nodes) { if (nodes.empty() || nodes.front().IsNull()) { m_Controls->timeSliceNavigationWidget->setEnabled(false); m_Controls->tlTime->setEnabled(false); m_Controls->tlWhat1->setEnabled(false); m_Controls->cbWhat1->setEnabled(false); m_Controls->tlWhat2->setEnabled(false); m_Controls->cbWhat2->setEnabled(false); return; } auto selectedImage = dynamic_cast(nodes.front()->GetData()); if (nullptr == selectedImage) { return; } if (selectedImage->GetDimension() > 3) { // try to retrieve the TNC (for 4-D Processing ) this->InternalGetTimeNavigationController(); m_Controls->timeSliceNavigationWidget->setEnabled(true); m_Controls->tlTime->setEnabled(true); } m_Controls->tlWhat1->setEnabled(true); m_Controls->cbWhat1->setEnabled(true); m_Controls->tlWhat2->setEnabled(true); m_Controls->cbWhat2->setEnabled(true); } void QmitkBasicImageProcessing::ChangeGUI() { if(m_Controls->rBOneImOp->isChecked()) { m_Controls->gbTwoImageOps->hide(); m_Controls->gbOneImageOps->show(); } else if(m_Controls->rBTwoImOp->isChecked()) { m_Controls->gbOneImageOps->hide(); m_Controls->gbTwoImageOps->show(); } } void QmitkBasicImageProcessing::ResetParameterPanel() { m_Controls->tlParam->setEnabled(false); m_Controls->tlParam1->setEnabled(false); m_Controls->tlParam2->setEnabled(false); m_Controls->tlParam3->setEnabled(false); m_Controls->tlParam4->setEnabled(false); m_Controls->sbParam1->setEnabled(false); m_Controls->sbParam2->setEnabled(false); m_Controls->dsbParam1->setEnabled(false); m_Controls->dsbParam2->setEnabled(false); m_Controls->dsbParam3->setEnabled(false); m_Controls->cbParam4->setEnabled(false); m_Controls->sbParam1->setValue(0); m_Controls->sbParam2->setValue(0); m_Controls->dsbParam1->setValue(0); m_Controls->dsbParam2->setValue(0); m_Controls->dsbParam3->setValue(0); m_Controls->sbParam1->show(); m_Controls->sbParam2->show(); m_Controls->dsbParam1->hide(); m_Controls->dsbParam2->hide(); m_Controls->dsbParam3->hide(); m_Controls->cbParam4->hide(); m_Controls->tlParam3->hide(); m_Controls->tlParam4->hide(); } void QmitkBasicImageProcessing::SelectAction(int action) { auto selectedImage = m_Controls->selectedImageWidget->GetSelectedNode(); if (selectedImage.IsNull()) { return; } // Prepare GUI this->ResetParameterPanel(); m_Controls->btnDoIt->setEnabled(false); m_Controls->cbHideOrig->setEnabled(false); QString text1 = tr("No Parameters"); QString text2 = text1; QString text3 = text1; QString text4 = text1; if (action != 19) { m_Controls->dsbParam1->hide(); m_Controls->dsbParam2->hide(); m_Controls->dsbParam3->hide(); m_Controls->tlParam1->show(); m_Controls->tlParam2->show(); m_Controls->tlParam3->hide(); m_Controls->tlParam4->hide(); m_Controls->sbParam1->show(); m_Controls->sbParam2->show(); m_Controls->cbParam4->hide(); } switch (action) { case 2: { m_SelectedAction = GAUSSIAN; m_Controls->tlParam1->setEnabled(true); m_Controls->sbParam1->hide(); m_Controls->dsbParam1->show(); m_Controls->dsbParam1->setEnabled(true); text1 = tr("&Variance:"); m_Controls->tlParam2->hide(); m_Controls->sbParam2->hide(); m_Controls->dsbParam1->setMinimum( 0 ); m_Controls->dsbParam1->setMaximum( 200 ); m_Controls->dsbParam1->setValue( 2 ); break; } case 3: { m_SelectedAction = MEDIAN; m_Controls->tlParam1->setEnabled(true); m_Controls->sbParam1->setEnabled(true); text1 = tr("&Radius:"); m_Controls->sbParam1->setMinimum( 0 ); m_Controls->sbParam1->setMaximum( 200 ); m_Controls->sbParam1->setValue( 3 ); break; } case 4: { m_SelectedAction = TOTALVARIATION; m_Controls->tlParam1->setEnabled(true); m_Controls->sbParam1->setEnabled(true); m_Controls->tlParam2->setEnabled(true); m_Controls->sbParam2->setEnabled(true); text1 = tr("Number Iterations:"); text2 = tr("Regularization\n(Lambda/1000):"); m_Controls->sbParam1->setMinimum( 1 ); m_Controls->sbParam1->setMaximum( 1000 ); m_Controls->sbParam1->setValue( 40 ); m_Controls->sbParam2->setMinimum( 0 ); m_Controls->sbParam2->setMaximum( 100000 ); m_Controls->sbParam2->setValue( 1 ); break; } case 6: { m_SelectedAction = DILATION; m_Controls->tlParam1->setEnabled(true); m_Controls->sbParam1->setEnabled(true); text1 = tr("&Radius:"); m_Controls->sbParam1->setMinimum( 0 ); m_Controls->sbParam1->setMaximum( 200 ); m_Controls->sbParam1->setValue( 3 ); break; } case 7: { m_SelectedAction = EROSION; m_Controls->tlParam1->setEnabled(true); m_Controls->sbParam1->setEnabled(true); text1 = tr("&Radius:"); m_Controls->sbParam1->setMinimum( 0 ); m_Controls->sbParam1->setMaximum( 200 ); m_Controls->sbParam1->setValue( 3 ); break; } case 8: { m_SelectedAction = OPENING; m_Controls->tlParam1->setEnabled(true); m_Controls->sbParam1->setEnabled(true); text1 = tr("&Radius:"); m_Controls->sbParam1->setMinimum( 0 ); m_Controls->sbParam1->setMaximum( 200 ); m_Controls->sbParam1->setValue( 3 ); break; } case 9: { m_SelectedAction = CLOSING; m_Controls->tlParam1->setEnabled(true); m_Controls->sbParam1->setEnabled(true); text1 = tr("&Radius:"); m_Controls->sbParam1->setMinimum( 0 ); m_Controls->sbParam1->setMaximum( 200 ); m_Controls->sbParam1->setValue( 3 ); break; } case 11: { m_SelectedAction = GRADIENT; m_Controls->tlParam1->setEnabled(true); m_Controls->sbParam1->hide(); m_Controls->dsbParam1->show(); m_Controls->dsbParam1->setEnabled(true); text1 = tr("Sigma of Gaussian Kernel:\n(in Image Spacing Units)"); m_Controls->tlParam2->hide(); m_Controls->sbParam2->hide(); m_Controls->dsbParam1->setMinimum( 0 ); m_Controls->dsbParam1->setMaximum( 200 ); m_Controls->dsbParam1->setValue( 2 ); break; } case 12: { m_SelectedAction = LAPLACIAN; break; } case 13: { m_SelectedAction = SOBEL; break; } case 15: { m_SelectedAction = THRESHOLD; m_Controls->tlParam1->setEnabled(true); m_Controls->sbParam1->setEnabled(true); m_Controls->tlParam2->setEnabled(true); m_Controls->sbParam2->setEnabled(true); text1 = tr("Lower threshold:"); text2 = tr("Upper threshold:"); m_Controls->sbParam1->setMinimum( -100000 ); m_Controls->sbParam1->setMaximum( 100000 ); m_Controls->sbParam1->setValue( 0 ); m_Controls->sbParam2->setMinimum( -100000 ); m_Controls->sbParam2->setMaximum( 100000 ); m_Controls->sbParam2->setValue( 300 ); break; } case 16: { m_SelectedAction = INVERSION; break; } case 17: { m_SelectedAction = DOWNSAMPLING; m_Controls->tlParam1->setEnabled(true); m_Controls->sbParam1->setEnabled(true); text1 = tr("Downsampling by Factor:"); m_Controls->sbParam1->setMinimum( 1 ); m_Controls->sbParam1->setMaximum( 100 ); m_Controls->sbParam1->setValue( 2 ); break; } case 18: { m_SelectedAction = FLIPPING; m_Controls->tlParam1->setEnabled(true); m_Controls->sbParam1->setEnabled(true); text1 = tr("Flip across axis:"); m_Controls->sbParam1->setMinimum( 0 ); m_Controls->sbParam1->setMaximum( 2 ); m_Controls->sbParam1->setValue( 1 ); break; } case 19: { m_SelectedAction = RESAMPLING; m_Controls->tlParam1->setEnabled(true); m_Controls->sbParam1->setEnabled(false); m_Controls->sbParam1->hide(); m_Controls->dsbParam1->show(); m_Controls->dsbParam1->setEnabled(true); m_Controls->tlParam2->setEnabled(true); m_Controls->sbParam2->setEnabled(false); m_Controls->sbParam2->hide(); m_Controls->dsbParam2->show(); m_Controls->dsbParam2->setEnabled(true); m_Controls->tlParam3->show(); m_Controls->tlParam3->setEnabled(true); m_Controls->dsbParam3->show(); m_Controls->dsbParam3->setEnabled(true); m_Controls->tlParam4->show(); m_Controls->tlParam4->setEnabled(true); m_Controls->cbParam4->show(); m_Controls->cbParam4->setEnabled(true); m_Controls->dsbParam1->setMinimum(0.01); m_Controls->dsbParam1->setMaximum(10.0); m_Controls->dsbParam1->setSingleStep(0.1); m_Controls->dsbParam1->setValue(0.3); m_Controls->dsbParam2->setMinimum(0.01); m_Controls->dsbParam2->setMaximum(10.0); m_Controls->dsbParam2->setSingleStep(0.1); m_Controls->dsbParam2->setValue(0.3); m_Controls->dsbParam3->setMinimum(0.01); m_Controls->dsbParam3->setMaximum(10.0); m_Controls->dsbParam3->setSingleStep(0.1); m_Controls->dsbParam3->setValue(1.5); text1 = tr("x-spacing:"); text2 = tr("y-spacing:"); text3 = tr("z-spacing:"); text4 = tr("Interplation:"); break; } case 20: { m_SelectedAction = RESCALE; m_Controls->dsbParam1->show(); m_Controls->tlParam1->show(); m_Controls->dsbParam1->setEnabled(true); m_Controls->tlParam1->setEnabled(true); m_Controls->dsbParam2->show(); m_Controls->tlParam2->show(); m_Controls->dsbParam2->setEnabled(true); m_Controls->tlParam2->setEnabled(true); text1 = tr("Output minimum:"); text2 = tr("Output maximum:"); break; } case 21: { m_SelectedAction = RESCALE2; m_Controls->dsbParam1->show(); m_Controls->tlParam1->show(); m_Controls->dsbParam1->setEnabled(true); m_Controls->tlParam1->setEnabled(true); text1 = tr("Scaling value:"); break; } default: return; } m_Controls->tlParam->setEnabled(true); m_Controls->tlParam1->setText(text1); m_Controls->tlParam2->setText(text2); m_Controls->tlParam3->setText(text3); m_Controls->tlParam4->setText(text4); m_Controls->btnDoIt->setEnabled(true); m_Controls->cbHideOrig->setEnabled(true); } void QmitkBasicImageProcessing::StartButtonClicked() { auto selectedNode = m_Controls->selectedImageWidget->GetSelectedNode(); if (selectedNode.IsNull()) { return; } this->BusyCursorOn(); mitk::Image::Pointer newImage; try { newImage = dynamic_cast(selectedNode->GetData()); } catch ( std::exception &e ) { QString exceptionString = tr("An error occured during image loading:\n"); exceptionString.append( e.what() ); QMessageBox::warning( nullptr, "Basic Image Processing", exceptionString , QMessageBox::Ok, QMessageBox::NoButton ); this->BusyCursorOff(); return; } // check if input image is valid, casting does not throw exception when casting from 'nullptr-Object' if ( (! newImage) || (newImage->IsInitialized() == false) ) { this->BusyCursorOff(); QMessageBox::warning( nullptr, "Basic Image Processing", tr("Input image is broken or not initialized. Returning."), QMessageBox::Ok, QMessageBox::NoButton ); return; } // check if operation is done on 4D a image time step if(newImage->GetDimension() > 3) { auto timeSelector = mitk::ImageTimeSelector::New(); timeSelector->SetInput(newImage); timeSelector->SetTimeNr(m_Controls->timeSliceNavigationWidget->GetPos() ); timeSelector->Update(); newImage = timeSelector->GetOutput(); } // check if image or vector image auto itkImage = ImageType::New(); auto itkVecImage = VectorImageType::New(); int isVectorImage = newImage->GetPixelType().GetNumberOfComponents(); if(isVectorImage > 1) { CastToItkImage( newImage, itkVecImage ); } else { CastToItkImage( newImage, itkImage ); } std::stringstream nameAddition(""); int param1 = m_Controls->sbParam1->value(); int param2 = m_Controls->sbParam2->value(); double dparam1 = m_Controls->dsbParam1->value(); double dparam2 = m_Controls->dsbParam2->value(); double dparam3 = m_Controls->dsbParam3->value(); try { switch (m_SelectedAction) { case GAUSSIAN: { GaussianFilterType::Pointer gaussianFilter = GaussianFilterType::New(); gaussianFilter->SetInput( itkImage ); gaussianFilter->SetVariance( dparam1 ); gaussianFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(gaussianFilter->GetOutput())->Clone(); nameAddition << "_Gaussian_var_" << dparam1; std::cout << "Gaussian filtering successful." << std::endl; break; } case MEDIAN: { MedianFilterType::Pointer medianFilter = MedianFilterType::New(); MedianFilterType::InputSizeType size; size.Fill(param1); medianFilter->SetRadius( size ); medianFilter->SetInput(itkImage); medianFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(medianFilter->GetOutput())->Clone(); nameAddition << "_Median_radius_" << param1; std::cout << "Median Filtering successful." << std::endl; break; } case TOTALVARIATION: { if(isVectorImage > 1) { VectorTotalVariationFilterType::Pointer TVFilter = VectorTotalVariationFilterType::New(); TVFilter->SetInput( itkVecImage.GetPointer() ); TVFilter->SetNumberIterations(param1); TVFilter->SetLambda(double(param2)/1000.); TVFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(TVFilter->GetOutput())->Clone(); } else { ImagePTypeToFloatPTypeCasterType::Pointer floatCaster = ImagePTypeToFloatPTypeCasterType::New(); floatCaster->SetInput( itkImage ); floatCaster->Update(); DoubleImageType::Pointer fImage = floatCaster->GetOutput(); TotalVariationFilterType::Pointer TVFilter = TotalVariationFilterType::New(); TVFilter->SetInput( fImage.GetPointer() ); TVFilter->SetNumberIterations(param1); TVFilter->SetLambda(double(param2)/1000.); TVFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(TVFilter->GetOutput())->Clone(); } nameAddition << "_TV_Iter_" << param1 << "_L_" << param2; std::cout << "Total Variation Filtering successful." << std::endl; break; } case DILATION: { BallType binaryBall; binaryBall.SetRadius( param1 ); binaryBall.CreateStructuringElement(); DilationFilterType::Pointer dilationFilter = DilationFilterType::New(); dilationFilter->SetInput( itkImage ); dilationFilter->SetKernel( binaryBall ); dilationFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(dilationFilter->GetOutput())->Clone(); nameAddition << "_Dilated_by_" << param1; std::cout << "Dilation successful." << std::endl; break; } case EROSION: { BallType binaryBall; binaryBall.SetRadius( param1 ); binaryBall.CreateStructuringElement(); ErosionFilterType::Pointer erosionFilter = ErosionFilterType::New(); erosionFilter->SetInput( itkImage ); erosionFilter->SetKernel( binaryBall ); erosionFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(erosionFilter->GetOutput())->Clone(); nameAddition << "_Eroded_by_" << param1; std::cout << "Erosion successful." << std::endl; break; } case OPENING: { BallType binaryBall; binaryBall.SetRadius( param1 ); binaryBall.CreateStructuringElement(); OpeningFilterType::Pointer openFilter = OpeningFilterType::New(); openFilter->SetInput( itkImage ); openFilter->SetKernel( binaryBall ); openFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(openFilter->GetOutput())->Clone(); nameAddition << "_Opened_by_" << param1; std::cout << "Opening successful." << std::endl; break; } case CLOSING: { BallType binaryBall; binaryBall.SetRadius( param1 ); binaryBall.CreateStructuringElement(); ClosingFilterType::Pointer closeFilter = ClosingFilterType::New(); closeFilter->SetInput( itkImage ); closeFilter->SetKernel( binaryBall ); closeFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(closeFilter->GetOutput())->Clone(); nameAddition << "_Closed_by_" << param1; std::cout << "Closing successful." << std::endl; break; } case GRADIENT: { GradientFilterType::Pointer gradientFilter = GradientFilterType::New(); gradientFilter->SetInput( itkImage ); gradientFilter->SetSigma( dparam1 ); gradientFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(gradientFilter->GetOutput())->Clone(); nameAddition << "_Gradient_sigma_" << dparam1; std::cout << "Gradient calculation successful." << std::endl; break; } case LAPLACIAN: { // the laplace filter requires a float type image as input, we need to cast the itkImage // to correct type ImagePTypeToFloatPTypeCasterType::Pointer caster = ImagePTypeToFloatPTypeCasterType::New(); caster->SetInput( itkImage ); caster->Update(); DoubleImageType::Pointer fImage = caster->GetOutput(); LaplacianFilterType::Pointer laplacianFilter = LaplacianFilterType::New(); laplacianFilter->SetInput( fImage ); laplacianFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(laplacianFilter->GetOutput())->Clone(); nameAddition << "_Second_Derivative"; std::cout << "Laplacian filtering successful." << std::endl; break; } case SOBEL: { // the sobel filter requires a float type image as input, we need to cast the itkImage // to correct type ImagePTypeToFloatPTypeCasterType::Pointer caster = ImagePTypeToFloatPTypeCasterType::New(); caster->SetInput( itkImage ); caster->Update(); DoubleImageType::Pointer fImage = caster->GetOutput(); SobelFilterType::Pointer sobelFilter = SobelFilterType::New(); sobelFilter->SetInput( fImage ); sobelFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(sobelFilter->GetOutput())->Clone(); nameAddition << "_Sobel"; std::cout << "Edge Detection successful." << std::endl; break; } case THRESHOLD: { ThresholdFilterType::Pointer thFilter = ThresholdFilterType::New(); thFilter->SetLowerThreshold(param1 < param2 ? param1 : param2); thFilter->SetUpperThreshold(param2 > param1 ? param2 : param1); thFilter->SetInsideValue(1); thFilter->SetOutsideValue(0); thFilter->SetInput(itkImage); thFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(thFilter->GetOutput())->Clone(); nameAddition << "_Threshold"; std::cout << "Thresholding successful." << std::endl; break; } case INVERSION: { InversionFilterType::Pointer invFilter = InversionFilterType::New(); mitk::ScalarType min = newImage->GetStatistics()->GetScalarValueMin(); mitk::ScalarType max = newImage->GetStatistics()->GetScalarValueMax(); invFilter->SetMaximum( max + min ); invFilter->SetInput(itkImage); invFilter->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(invFilter->GetOutput())->Clone(); nameAddition << "_Inverted"; std::cout << "Image inversion successful." << std::endl; break; } case DOWNSAMPLING: { ResampleImageFilterType::Pointer downsampler = ResampleImageFilterType::New(); downsampler->SetInput( itkImage ); NearestInterpolatorType::Pointer interpolator = NearestInterpolatorType::New(); downsampler->SetInterpolator( interpolator ); downsampler->SetDefaultPixelValue( 0 ); ResampleImageFilterType::SpacingType spacing = itkImage->GetSpacing(); spacing *= (double) param1; downsampler->SetOutputSpacing( spacing ); downsampler->SetOutputOrigin( itkImage->GetOrigin() ); downsampler->SetOutputDirection( itkImage->GetDirection() ); ResampleImageFilterType::SizeType size = itkImage->GetLargestPossibleRegion().GetSize(); for ( int i = 0; i < 3; ++i ) { size[i] /= param1; } downsampler->SetSize( size ); downsampler->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(downsampler->GetOutput())->Clone(); nameAddition << "_Downsampled_by_" << param1; std::cout << "Downsampling successful." << std::endl; break; } case FLIPPING: { FlipImageFilterType::Pointer flipper = FlipImageFilterType::New(); flipper->SetInput( itkImage ); itk::FixedArray flipAxes; for(int i=0; i<3; ++i) { if(i == param1) { flipAxes[i] = true; } else { flipAxes[i] = false; } } flipper->SetFlipAxes(flipAxes); flipper->UpdateLargestPossibleRegion(); newImage = mitk::ImportItkImage(flipper->GetOutput())->Clone(); std::cout << "Image flipping successful." << std::endl; break; } case RESAMPLING: { std::string selectedInterpolator; ResampleImageFilterType::Pointer resampler = ResampleImageFilterType::New(); switch (m_SelectedInterpolation) { case LINEAR: { LinearInterpolatorType::Pointer interpolator = LinearInterpolatorType::New(); resampler->SetInterpolator(interpolator); selectedInterpolator = "Linear"; break; } case NEAREST: { NearestInterpolatorType::Pointer interpolator = NearestInterpolatorType::New(); resampler->SetInterpolator(interpolator); selectedInterpolator = "Nearest"; break; } default: { LinearInterpolatorType::Pointer interpolator = LinearInterpolatorType::New(); resampler->SetInterpolator(interpolator); selectedInterpolator = "Linear"; break; } } resampler->SetInput( itkImage ); resampler->SetOutputOrigin( itkImage->GetOrigin() ); ImageType::SizeType input_size = itkImage->GetLargestPossibleRegion().GetSize(); ImageType::SpacingType input_spacing = itkImage->GetSpacing(); ImageType::SizeType output_size; ImageType::SpacingType output_spacing; output_size[0] = input_size[0] * (input_spacing[0] / dparam1); output_size[1] = input_size[1] * (input_spacing[1] / dparam2); output_size[2] = input_size[2] * (input_spacing[2] / dparam3); output_spacing [0] = dparam1; output_spacing [1] = dparam2; output_spacing [2] = dparam3; resampler->SetSize( output_size ); resampler->SetOutputSpacing( output_spacing ); resampler->SetOutputDirection( itkImage->GetDirection() ); resampler->UpdateLargestPossibleRegion(); ImageType::Pointer resampledImage = resampler->GetOutput(); newImage = mitk::ImportItkImage( resampledImage )->Clone(); nameAddition << "_Resampled_" << selectedInterpolator; std::cout << "Resampling successful." << std::endl; break; } case RESCALE: { DoubleImageType::Pointer floatImage = DoubleImageType::New(); CastToItkImage( newImage, floatImage ); itk::RescaleIntensityImageFilter::Pointer filter = itk::RescaleIntensityImageFilter::New(); filter->SetInput(0, floatImage); filter->SetOutputMinimum(dparam1); filter->SetOutputMaximum(dparam2); filter->Update(); floatImage = filter->GetOutput(); newImage = mitk::Image::New(); newImage->InitializeByItk(floatImage.GetPointer()); newImage->SetVolume(floatImage->GetBufferPointer()); nameAddition << "_Rescaled"; std::cout << "Rescaling successful." << std::endl; break; } case RESCALE2: { DoubleImageType::Pointer floatImage = DoubleImageType::New(); CastToItkImage( newImage, floatImage ); itk::ShiftScaleImageFilter::Pointer filter = itk::ShiftScaleImageFilter::New(); filter->SetInput(0, floatImage); filter->SetScale(dparam1); filter->Update(); floatImage = filter->GetOutput(); newImage = mitk::Image::New(); newImage->InitializeByItk(floatImage.GetPointer()); newImage->SetVolume(floatImage->GetBufferPointer()); nameAddition << "_Rescaled"; std::cout << "Rescaling successful." << std::endl; break; } default: this->BusyCursorOff(); return; } } catch (...) { this->BusyCursorOff(); QMessageBox::warning(nullptr, "Warning", "Problem when applying filter operation. Check your input..."); return; } newImage->DisconnectPipeline(); // adjust level/window to new image mitk::LevelWindow levelwindow; levelwindow.SetAuto( newImage ); auto levWinProp = mitk::LevelWindowProperty::New(); levWinProp->SetLevelWindow( levelwindow ); // compose new image name std::string name = selectedNode->GetName(); if (name.find(".nrrd") == name.size() -5 ) { name = name.substr(0,name.size() -5); } name.append( nameAddition.str() ); // create final result MITK data storage node auto result = mitk::DataNode::New(); result->SetProperty( "levelwindow", levWinProp ); result->SetProperty( "name", mitk::StringProperty::New( name.c_str() ) ); result->SetData( newImage ); // for vector images, a different mapper is needed if(isVectorImage > 1) { auto mapper = mitk::VectorImageMapper2D::New(); result->SetMapper(1,mapper); } // add new image to data storage and set as active to ease further processing GetDataStorage()->Add(result, selectedNode); if (m_Controls->cbHideOrig->isChecked() == true) { selectedNode->SetProperty("visible", mitk::BoolProperty::New(false)); } // show the results mitk::RenderingManager::GetInstance()->RequestUpdateAll(); this->BusyCursorOff(); } void QmitkBasicImageProcessing::SelectAction2(int operation) { switch (operation) { case 2: m_SelectedOperation = ADD; break; case 3: m_SelectedOperation = SUBTRACT; break; case 4: m_SelectedOperation = MULTIPLY; break; case 5: m_SelectedOperation = DIVIDE; break; case 6: m_SelectedOperation = RESAMPLE_TO; break; case 8: m_SelectedOperation = AND; break; case 9: m_SelectedOperation = OR; break; case 10: m_SelectedOperation = XOR; break; default: return; } m_Controls->selectedImageLabel_2->setEnabled(true); m_Controls->selectedImageWidget_2->setEnabled(true); m_Controls->btnDoIt2->setEnabled(true); } void QmitkBasicImageProcessing::StartButton2Clicked() { auto selectedNode = m_Controls->selectedImageWidget->GetSelectedNode(); if (selectedNode.IsNull()) { return; } auto selectedNode2 = m_Controls->selectedImageWidget_2->GetSelectedNode(); if (selectedNode2.IsNull()) { return; } mitk::Image::Pointer newImage1 = dynamic_cast(selectedNode->GetData()); mitk::Image::Pointer newImage2 = dynamic_cast(selectedNode2->GetData()); // check if images are valid if(newImage1.IsNull() || newImage2.IsNull() || false == newImage1->IsInitialized() || false == newImage2->IsInitialized()) { itkGenericExceptionMacro(<< "At least one of the input images is broken or not initialized."); return; } this->BusyCursorOn(); // check if 4D image and use filter on correct time step if(newImage1->GetDimension() > 3) { auto timeSelector = mitk::ImageTimeSelector::New(); auto sn_widget = static_cast(m_Controls->timeSliceNavigationWidget); int time = 0; if( sn_widget != nullptr ) time = sn_widget->GetPos(); timeSelector->SetInput(newImage1); timeSelector->SetTimeNr( time ); timeSelector->UpdateLargestPossibleRegion(); newImage1 = timeSelector->GetOutput(); newImage1->DisconnectPipeline(); timeSelector->SetInput(newImage2); timeSelector->SetTimeNr( time ); timeSelector->UpdateLargestPossibleRegion(); newImage2 = timeSelector->GetOutput(); newImage2->DisconnectPipeline(); } auto itkImage1 = ImageType::New(); auto itkImage2 = ImageType::New(); CastToItkImage( newImage1, itkImage1 ); CastToItkImage( newImage2, itkImage2 ); std::string nameAddition = ""; try { switch (m_SelectedOperation) { case ADD: { AddFilterType::Pointer addFilter = AddFilterType::New(); addFilter->SetInput1( itkImage1 ); addFilter->SetInput2( itkImage2 ); addFilter->UpdateLargestPossibleRegion(); newImage1 = mitk::ImportItkImage(addFilter->GetOutput())->Clone(); nameAddition = "_Added"; } break; case SUBTRACT: { SubtractFilterType::Pointer subFilter = SubtractFilterType::New(); subFilter->SetInput1( itkImage1 ); subFilter->SetInput2( itkImage2 ); subFilter->UpdateLargestPossibleRegion(); newImage1 = mitk::ImportItkImage(subFilter->GetOutput())->Clone(); nameAddition = "_Subtracted"; } break; case MULTIPLY: { MultiplyFilterType::Pointer multFilter = MultiplyFilterType::New(); multFilter->SetInput1( itkImage1 ); multFilter->SetInput2( itkImage2 ); multFilter->UpdateLargestPossibleRegion(); newImage1 = mitk::ImportItkImage(multFilter->GetOutput())->Clone(); nameAddition = "_Multiplied"; } break; case DIVIDE: { DivideFilterType::Pointer divFilter = DivideFilterType::New(); divFilter->SetInput1( itkImage1 ); divFilter->SetInput2( itkImage2 ); divFilter->UpdateLargestPossibleRegion(); newImage1 = mitk::ImportItkImage(divFilter->GetOutput())->Clone(); nameAddition = "_Divided"; } break; case AND: { AndImageFilterType::Pointer andFilter = AndImageFilterType::New(); andFilter->SetInput1( itkImage1 ); andFilter->SetInput2( itkImage2 ); andFilter->UpdateLargestPossibleRegion(); newImage1 = mitk::ImportItkImage(andFilter->GetOutput())->Clone(); nameAddition = "_AND"; break; } case OR: { OrImageFilterType::Pointer orFilter = OrImageFilterType::New(); orFilter->SetInput1( itkImage1 ); orFilter->SetInput2( itkImage2 ); orFilter->UpdateLargestPossibleRegion(); newImage1 = mitk::ImportItkImage(orFilter->GetOutput())->Clone(); nameAddition = "_OR"; break; } case XOR: { XorImageFilterType::Pointer xorFilter = XorImageFilterType::New(); xorFilter->SetInput1( itkImage1 ); xorFilter->SetInput2( itkImage2 ); xorFilter->UpdateLargestPossibleRegion(); newImage1 = mitk::ImportItkImage(xorFilter->GetOutput())->Clone(); nameAddition = "_XOR"; break; } case RESAMPLE_TO: { itk::BSplineInterpolateImageFunction::Pointer bspl_interpolator = itk::BSplineInterpolateImageFunction::New(); bspl_interpolator->SetSplineOrder( 3 ); itk::NearestNeighborInterpolateImageFunction< DoubleImageType >::Pointer nn_interpolator = itk::NearestNeighborInterpolateImageFunction< DoubleImageType>::New(); DoubleImageType::Pointer itkImage1 = DoubleImageType::New(); DoubleImageType::Pointer itkImage2 = DoubleImageType::New(); CastToItkImage( newImage1, itkImage1 ); CastToItkImage( newImage2, itkImage2 ); itk::ResampleImageFilter< DoubleImageType, DoubleImageType >::Pointer resampleFilter = itk::ResampleImageFilter< DoubleImageType, DoubleImageType >::New(); resampleFilter->SetInput( itkImage1 ); resampleFilter->SetReferenceImage( itkImage2 ); resampleFilter->SetUseReferenceImage( true ); // use NN interp with binary images if(selectedNode->GetProperty("binary") ) resampleFilter->SetInterpolator( nn_interpolator ); else resampleFilter->SetInterpolator( bspl_interpolator ); resampleFilter->SetDefaultPixelValue( 0 ); try { resampleFilter->UpdateLargestPossibleRegion(); } catch( const itk::ExceptionObject &e) { MITK_WARN << "Updating resampling filter failed. "; MITK_WARN << "REASON: " << e.what(); } DoubleImageType::Pointer resampledImage = resampleFilter->GetOutput(); newImage1 = mitk::ImportItkImage( resampledImage )->Clone(); nameAddition = "_Resampled"; break; } default: std::cout << "Something went wrong..." << std::endl; this->BusyCursorOff(); return; } } catch (const itk::ExceptionObject& e ) { this->BusyCursorOff(); QMessageBox::warning(nullptr, "ITK Exception", e.what() ); QMessageBox::warning(nullptr, "Warning", tr("Problem when applying arithmetic operation to two images. Check dimensions of input images.")); return; } // disconnect pipeline; images will not be reused newImage1->DisconnectPipeline(); itkImage1 = nullptr; itkImage2 = nullptr; // adjust level/window to new image and compose new image name mitk::LevelWindow levelwindow; levelwindow.SetAuto( newImage1 ); auto levWinProp = mitk::LevelWindowProperty::New(); levWinProp->SetLevelWindow( levelwindow ); std::string name = selectedNode->GetName(); if (name.find(".nrrd") == name.size() -5 ) { name = name.substr(0,name.size() -5); } // create final result MITK data storage node auto result = mitk::DataNode::New(); result->SetProperty( "levelwindow", levWinProp ); result->SetProperty( "name", mitk::StringProperty::New( (name + nameAddition ).c_str() )); result->SetData( newImage1 ); this->GetDataStorage()->Add(result, selectedNode); if (m_Controls->cbHideOrig->isChecked() == true) { selectedNode->SetProperty("visible", mitk::BoolProperty::New(false)); selectedNode2->SetProperty("visible", mitk::BoolProperty::New(false)); } // show the newly created image mitk::RenderingManager::GetInstance()->RequestUpdateAll(); this->BusyCursorOff(); } void QmitkBasicImageProcessing::SelectInterpolator(int interpolator) { switch (interpolator) { case 0: { m_SelectedInterpolation = LINEAR; break; } case 1: { m_SelectedInterpolation = NEAREST; break; } } } diff --git a/Plugins/org.mitk.gui.qt.common/src/QmitkAbstractRenderEditor.cpp b/Plugins/org.mitk.gui.qt.common/src/QmitkAbstractRenderEditor.cpp index dd6b34f1af..6c8c22100b 100644 --- a/Plugins/org.mitk.gui.qt.common/src/QmitkAbstractRenderEditor.cpp +++ b/Plugins/org.mitk.gui.qt.common/src/QmitkAbstractRenderEditor.cpp @@ -1,145 +1,147 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkAbstractRenderEditor.h" #include "internal/QmitkCommonActivator.h" #include #include #include #include #include +#include + #include class QmitkAbstractRenderEditorPrivate { public: QmitkAbstractRenderEditorPrivate() : m_RenderingManagerInterface(mitk::MakeRenderingManagerInterface(mitk::RenderingManager::GetInstance())) { } ~QmitkAbstractRenderEditorPrivate() { delete m_RenderingManagerInterface; } mitk::IRenderingManager* m_RenderingManagerInterface; mitk::IPreferences* m_Prefs; }; QmitkAbstractRenderEditor::QmitkAbstractRenderEditor() : d(new QmitkAbstractRenderEditorPrivate) { } QmitkAbstractRenderEditor::~QmitkAbstractRenderEditor() { if (d->m_Prefs != nullptr) { d->m_Prefs->OnChanged.RemoveListener(mitk::MessageDelegate1 (this, &QmitkAbstractRenderEditor::OnPreferencesChanged ) ); } } void QmitkAbstractRenderEditor::Init(berry::IEditorSite::Pointer site, berry::IEditorInput::Pointer input) { if (input.Cast().IsNull()) throw berry::PartInitException("Invalid Input: Must be mitk::DataStorageEditorInput"); this->SetSite(site); this->SetInput(input); d->m_Prefs = this->GetPreferences(); if (d->m_Prefs != nullptr) { d->m_Prefs->OnChanged.AddListener(mitk::MessageDelegate1 (this, &QmitkAbstractRenderEditor::OnPreferencesChanged ) ); } } mitk::IDataStorageReference::Pointer QmitkAbstractRenderEditor::GetDataStorageReference() const { mitk::DataStorageEditorInput::Pointer input = this->GetEditorInput().Cast(); if (input.IsNotNull()) { return input->GetDataStorageReference(); } return mitk::IDataStorageReference::Pointer(nullptr); } mitk::DataStorage::Pointer QmitkAbstractRenderEditor::GetDataStorage() const { mitk::IDataStorageReference::Pointer ref = this->GetDataStorageReference(); if (ref.IsNotNull()) return ref->GetDataStorage(); return mitk::DataStorage::Pointer(nullptr); } mitk::IPreferences* QmitkAbstractRenderEditor::GetPreferences() const { mitk::CoreServicePointer prefService(mitk::CoreServices::GetPreferencesService()); return prefService->GetSystemPreferences()->Node(this->GetSite()->GetId().toStdString()); } mitk::IRenderingManager* QmitkAbstractRenderEditor::GetRenderingManager() const { // we use the global rendering manager here. This should maybe replaced // by a local one, managing only the render windows specific for the editor return d->m_RenderingManagerInterface; } void QmitkAbstractRenderEditor::RequestUpdate(mitk::RenderingManager::RequestType requestType) { if (GetRenderingManager()) GetRenderingManager()->RequestUpdateAll(requestType); } void QmitkAbstractRenderEditor::ForceImmediateUpdate(mitk::RenderingManager::RequestType requestType) { if (GetRenderingManager()) GetRenderingManager()->ForceImmediateUpdateAll(requestType); } -mitk::SliceNavigationController* QmitkAbstractRenderEditor::GetTimeNavigationController() const +mitk::TimeNavigationController* QmitkAbstractRenderEditor::GetTimeNavigationController() const { if (GetRenderingManager()) return GetRenderingManager()->GetTimeNavigationController(); return nullptr; } void QmitkAbstractRenderEditor::OnPreferencesChanged(const mitk::IPreferences *) {} void QmitkAbstractRenderEditor::DoSave() {} void QmitkAbstractRenderEditor::DoSaveAs() {} bool QmitkAbstractRenderEditor::IsDirty() const { return false; } bool QmitkAbstractRenderEditor::IsSaveAsAllowed() const { return false; } mitk::TimePointType QmitkAbstractRenderEditor::GetSelectedTimePoint(const QString& /*id*/) const { auto timeNavigator = this->GetTimeNavigationController(); if (nullptr != timeNavigator) { return timeNavigator->GetSelectedTimePoint(); } return 0; } diff --git a/Plugins/org.mitk.gui.qt.common/src/QmitkAbstractRenderEditor.h b/Plugins/org.mitk.gui.qt.common/src/QmitkAbstractRenderEditor.h index c0f666c001..d1eb9bf302 100644 --- a/Plugins/org.mitk.gui.qt.common/src/QmitkAbstractRenderEditor.h +++ b/Plugins/org.mitk.gui.qt.common/src/QmitkAbstractRenderEditor.h @@ -1,166 +1,166 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkAbstractRenderEditor_h #define QmitkAbstractRenderEditor_h #include #include "mitkIRenderWindowPart.h" #include #include #include class QmitkAbstractRenderEditorPrivate; namespace mitk { class IPreferences; } /** * \ingroup org_mitk_gui_qt_common * * \brief A convenient base class for MITK render window BlueBerry Editors. * * QmitkAbstractRenderEditor provides several convenience methods that ease the introduction of * a new editor for rendering a MITK DataStorage: * *
    *
  1. Access to the DataStorage (~ the shared data repository) *
  2. Access to and update notification for the editor's preferences *
  3. Default implementation of some mitk::IRenderWindowPart methods *
* * When inheriting from QmitkAbstractRenderEditor, you must implement the following methods: *
    *
  • void CreateQtPartControl(QWidget* parent) *
  • void SetFocus() *
* * You may reimplement the following private virtual methods to be notified about certain changes: *
    *
  • void OnPreferencesChanged(const mitk::IPreferences*) *
* * \see IRenderWindowPart * \see ILinkedRenderWindowPart */ class MITK_QT_COMMON QmitkAbstractRenderEditor : public berry::QtEditorPart, public virtual mitk::IRenderWindowPart { Q_OBJECT Q_INTERFACES(mitk::IRenderWindowPart) public: berryObjectMacro(QmitkAbstractRenderEditor, QtEditorPart, mitk::IRenderWindowPart); /** * \see mitk::IRenderWindowPart::GetSelectedTimePoint() This default implementation assumes that all renderer use the same TimeNavigationControl provided by this class (GetTimeNavigationControl()). */ mitk::TimePointType GetSelectedTimePoint(const QString& id = QString()) const override; QmitkAbstractRenderEditor(); ~QmitkAbstractRenderEditor() override; protected: /** * Initializes this editor by checking for a valid mitk::DataStorageEditorInput as input. * * \see berry::IEditorPart::Init */ void Init(berry::IEditorSite::Pointer site, berry::IEditorInput::Pointer input) override; /** * Get a reference to the DataStorage set by the editor input. */ virtual mitk::IDataStorageReference::Pointer GetDataStorageReference() const; /** * Get the DataStorage set by the editor input. */ virtual mitk::DataStorage::Pointer GetDataStorage() const; /** * Get the preferences for this editor. */ virtual mitk::IPreferences* GetPreferences() const; /** * Get the RenderingManager used by this editor. This default implementation uses the * global MITK RenderingManager provided by mitk::RenderingManager::GetInstance(). * * \see mitk::IRenderWindowPart::GetRenderingManager */ mitk::IRenderingManager* GetRenderingManager() const override; /** * Request an update of this editor's render windows. * This implementation calls mitk::IRenderingManager::RequestUpdate on the rendering * manager interface returned by GetRenderingManager(); * * \param requestType The type of render windows for which an update is requested. * * \see mitk::IRenderWindowPart::RequestUpdate */ void RequestUpdate(mitk::RenderingManager::RequestType requestType = mitk::RenderingManager::REQUEST_UPDATE_ALL) override; /** * Force an immediate update of this editor's render windows. * This implementation calls mitk::IRenderingManager::ForceImmediateUpdate() on the rendering * manager interface returned by GetRenderingManager(); * * \param requestType The type of render windows for which an immedate update is forced. * * \see mitk::IRenderWindowPart::ForceImmediateUpdate */ void ForceImmediateUpdate(mitk::RenderingManager::RequestType requestType = mitk::RenderingManager::REQUEST_UPDATE_ALL) override; /** * Get the time navigation controller for this editor. - * This implementation returns the SliceNavigationController returned by the mitk::IRenderingManager::GetTimeNavigationController() + * This implementation returns the TimeNavigationController returned by the mitk::IRenderingManager::GetTimeNavigationController() * method of the interface implementation returned by GetRenderingManager(). * * \see mitk::IRenderingManager::GetTimeNavigationController */ - mitk::SliceNavigationController* GetTimeNavigationController() const override; + mitk::TimeNavigationController* GetTimeNavigationController() const override; /** \see berry::IEditorPart::DoSave */ void DoSave() override; /** \see berry::IEditorPart::DoSaveAs */ void DoSaveAs() override; /** \see berry::IEditorPart::IsDirty */ bool IsDirty() const override; /** \see berry::IEditorPart::IsSaveAsAllowed */ bool IsSaveAsAllowed() const override; private: virtual void OnPreferencesChanged(const mitk::IPreferences*); private: QScopedPointer d; }; #endif diff --git a/Plugins/org.mitk.gui.qt.common/src/QmitkAbstractView.cpp b/Plugins/org.mitk.gui.qt.common/src/QmitkAbstractView.cpp index ba86a491f2..95103106a7 100644 --- a/Plugins/org.mitk.gui.qt.common/src/QmitkAbstractView.cpp +++ b/Plugins/org.mitk.gui.qt.common/src/QmitkAbstractView.cpp @@ -1,521 +1,522 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkAbstractView.h" #include "QmitkDataNodeSelectionProvider.h" #include "internal/QmitkCommonActivator.h" #include "internal/QmitkDataNodeItemModel.h" // mitk Includes #include #include #include #include #include #include #include #include +#include // berry Includes #include #include #include #include // CTK Includes #include // Qt Includes #include #include #include #include #include class QmitkAbstractViewPrivate { public: QmitkAbstractViewPrivate(QmitkAbstractView* qq) : q(qq) , m_DataStorageServiceTracker(QmitkCommonActivator::GetContext()) , m_Parent(nullptr) , m_DataNodeItemModel(new QmitkDataNodeItemModel) , m_DataNodeSelectionModel(new QItemSelectionModel(m_DataNodeItemModel)) , m_InDataStorageChanged(false) { m_DataStorageServiceTracker.open(); } ~QmitkAbstractViewPrivate() { delete m_DataNodeSelectionModel; delete m_DataNodeItemModel; m_DataStorageServiceTracker.close(); } /** * Called when a DataStorage Add Event was thrown. Sets * m_InDataStorageChanged to true and calls NodeAdded afterwards. * \see m_InDataStorageChanged */ void NodeAddedProxy(const mitk::DataNode* node) { // garantuee no recursions when a new node event is thrown in NodeAdded() if(!m_InDataStorageChanged) { m_InDataStorageChanged = true; q->NodeAdded(node); q->DataStorageModified(); m_InDataStorageChanged = false; } } /** * Called when a DataStorage remove event was thrown. Sets * m_InDataStorageChanged to true and calls NodeRemoved afterwards. * \see m_InDataStorageChanged */ void NodeRemovedProxy(const mitk::DataNode* node) { // garantuee no recursions when a new node event is thrown in NodeAdded() if(!m_InDataStorageChanged) { m_InDataStorageChanged = true; q->NodeRemoved(node); q->DataStorageModified(); m_InDataStorageChanged = false; } } /** * Called when a DataStorage changed event was thrown. Sets * m_InDataStorageChanged to true and calls NodeChanged afterwards. * \see m_InDataStorageChanged */ void NodeChangedProxy(const mitk::DataNode* node) { // garantuee no recursions when a new node event is thrown in NodeAdded() if(!m_InDataStorageChanged) { m_InDataStorageChanged = true; q->NodeChanged(node); q->DataStorageModified(); m_InDataStorageChanged = false; } } /** * reactions to selection events from views */ void BlueBerrySelectionChanged(const berry::IWorkbenchPart::Pointer& sourcepart, const berry::ISelection::ConstPointer& selection) { if(sourcepart.IsNull() || sourcepart.GetPointer() == static_cast(q)) return; if(selection.IsNull()) { q->OnNullSelection(sourcepart); return; } mitk::DataNodeSelection::ConstPointer _DataNodeSelection = selection.Cast(); q->OnSelectionChanged(sourcepart, this->DataNodeSelectionToQList(_DataNodeSelection)); } /** * Converts a mitk::DataNodeSelection to a QList (possibly empty) */ QList DataNodeSelectionToQList(mitk::DataNodeSelection::ConstPointer currentSelection) const; QmitkAbstractView* const q; ctkServiceTracker m_DataStorageServiceTracker; /** * Saves the parent of this view (this is the scrollarea created in CreatePartControl(QWidget*) * \see CreatePartControl(QWidget*) */ QWidget* m_Parent; /** * Holds the current selection (selection made by this View !!!) */ QmitkDataNodeSelectionProvider::Pointer m_SelectionProvider; /** * Holds a helper model for firing selection events. */ QmitkDataNodeItemModel* m_DataNodeItemModel; /** * The selection model for the QmitkDataNodeItemModel; */ QItemSelectionModel* m_DataNodeSelectionModel; /** * object to observe BlueBerry selections */ QScopedPointer m_BlueBerrySelectionListener; /** * Saves if this class is currently working on DataStorage changes. * This is a protector variable to avoid recursive calls on event listener functions. */ bool m_InDataStorageChanged; }; QmitkAbstractView::QmitkAbstractView() : d(new QmitkAbstractViewPrivate(this)) { } void QmitkAbstractView::CreatePartControl(QWidget* parent) { // scrollArea auto scrollArea = new QScrollArea; //QVBoxLayout* scrollAreaLayout = new QVBoxLayout(scrollArea); scrollArea->setFrameShadow(QFrame::Plain); scrollArea->setFrameShape(QFrame::NoFrame); scrollArea->setHorizontalScrollBarPolicy(Qt::ScrollBarAsNeeded); scrollArea->setVerticalScrollBarPolicy(Qt::ScrollBarAsNeeded); // m_Parent d->m_Parent = new QWidget; //m_Parent->setSizePolicy(QSizePolicy(QSizePolicy::MinimumExpanding, QSizePolicy::MinimumExpanding)); this->CreateQtPartControl(d->m_Parent); //scrollAreaLayout->addWidget(m_Parent); //scrollArea->setLayout(scrollAreaLayout); // set the widget now scrollArea->setWidgetResizable(true); scrollArea->setWidget(d->m_Parent); // add the scroll area to the real parent (the view tabbar) QWidget* parentQWidget = static_cast(parent); auto parentLayout = new QVBoxLayout(parentQWidget); parentLayout->setMargin(0); parentLayout->setSpacing(0); parentLayout->addWidget(scrollArea); // finally set the layout containing the scroll area to the parent widget (= show it) parentQWidget->setLayout(parentLayout); this->AfterCreateQtPartControl(); } void QmitkAbstractView::AfterCreateQtPartControl() { this->SetSelectionProvider(); // REGISTER DATASTORAGE LISTENER this->GetDataStorage()->AddNodeEvent.AddListener( mitk::MessageDelegate1 ( d.data(), &QmitkAbstractViewPrivate::NodeAddedProxy ) ); this->GetDataStorage()->ChangedNodeEvent.AddListener( mitk::MessageDelegate1 ( d.data(), &QmitkAbstractViewPrivate::NodeChangedProxy ) ); this->GetDataStorage()->RemoveNodeEvent.AddListener( mitk::MessageDelegate1 ( d.data(), &QmitkAbstractViewPrivate::NodeRemovedProxy ) ); // REGISTER PREFERENCES LISTENER auto* prefs = this->GetPreferences(); if (prefs != nullptr) prefs->OnChanged.AddListener(mitk::MessageDelegate1(this, &QmitkAbstractView::OnPreferencesChanged)); // REGISTER FOR WORKBENCH SELECTION EVENTS d->m_BlueBerrySelectionListener.reset(new berry::NullSelectionChangedAdapter( d.data(), &QmitkAbstractViewPrivate::BlueBerrySelectionChanged)); this->GetSite()->GetWorkbenchWindow()->GetSelectionService()->AddPostSelectionListener(d->m_BlueBerrySelectionListener.data()); // EMULATE INITIAL SELECTION EVENTS // send the current selection berry::IWorkbenchPart::Pointer activePart = this->GetSite()->GetPage()->GetActivePart(); if (activePart.IsNotNull()) { this->OnSelectionChanged(activePart, this->GetCurrentSelection()); } // send preferences changed event this->OnPreferencesChanged(this->GetPreferences()); } QmitkAbstractView::~QmitkAbstractView() { this->Register(); this->GetDataStorage()->AddNodeEvent.RemoveListener( mitk::MessageDelegate1 ( d.data(), &QmitkAbstractViewPrivate::NodeAddedProxy ) ); this->GetDataStorage()->RemoveNodeEvent.RemoveListener( mitk::MessageDelegate1 ( d.data(), &QmitkAbstractViewPrivate::NodeRemovedProxy) ); this->GetDataStorage()->ChangedNodeEvent.RemoveListener( mitk::MessageDelegate1 ( d.data(), &QmitkAbstractViewPrivate::NodeChangedProxy ) ); auto* prefs = this->GetPreferences(); if(prefs != nullptr) prefs->OnChanged.RemoveListener(mitk::MessageDelegate1(this, &QmitkAbstractView::OnPreferencesChanged)); // REMOVE SELECTION PROVIDER this->GetSite()->SetSelectionProvider(berry::ISelectionProvider::Pointer(nullptr)); berry::ISelectionService* s = GetSite()->GetWorkbenchWindow()->GetSelectionService(); if(s) { s->RemovePostSelectionListener(d->m_BlueBerrySelectionListener.data()); } this->UnRegister(false); } void QmitkAbstractView::SetSelectionProvider() { // REGISTER A SELECTION PROVIDER d->m_SelectionProvider = QmitkDataNodeSelectionProvider::Pointer(new QmitkDataNodeSelectionProvider); d->m_SelectionProvider->SetItemSelectionModel(GetDataNodeSelectionModel()); this->GetSite()->SetSelectionProvider(berry::ISelectionProvider::Pointer(d->m_SelectionProvider)); } QItemSelectionModel *QmitkAbstractView::GetDataNodeSelectionModel() const { return nullptr; } void QmitkAbstractView::OnPreferencesChanged( const mitk::IPreferences* ) { } void QmitkAbstractView::DataStorageModified() { } void QmitkAbstractView::DataStorageChanged(mitk::IDataStorageReference::Pointer /*dsRef*/) { } mitk::IRenderWindowPart* QmitkAbstractView::GetRenderWindowPart(mitk::WorkbenchUtil::IRenderWindowPartStrategies strategies) const { berry::IWorkbenchPage::Pointer page = GetSite()->GetPage(); return mitk::WorkbenchUtil::GetRenderWindowPart(page, strategies); } void QmitkAbstractView::RequestRenderWindowUpdate(mitk::RenderingManager::RequestType requestType) { mitk::IRenderWindowPart* renderPart = this->GetRenderWindowPart(); if (renderPart == nullptr) return; if (mitk::IRenderingManager* renderingManager = renderPart->GetRenderingManager()) { renderingManager->RequestUpdateAll(requestType); } else { renderPart->RequestUpdate(requestType); } } void QmitkAbstractView::HandleException( const char* str, QWidget* parent, bool showDialog ) const { //itkGenericOutputMacro( << "Exception caught: " << str ); MITK_ERROR << str; if ( showDialog ) { QMessageBox::critical ( parent, "Exception caught!", str ); } } void QmitkAbstractView::HandleException( std::exception& e, QWidget* parent, bool showDialog ) const { HandleException( e.what(), parent, showDialog ); } void QmitkAbstractView::WaitCursorOn() { QApplication::setOverrideCursor( QCursor(Qt::WaitCursor) ); } void QmitkAbstractView::BusyCursorOn() { QApplication::setOverrideCursor( QCursor(Qt::BusyCursor) ); } void QmitkAbstractView::WaitCursorOff() { this->RestoreOverrideCursor(); } void QmitkAbstractView::BusyCursorOff() { this->RestoreOverrideCursor(); } void QmitkAbstractView::RestoreOverrideCursor() { QApplication::restoreOverrideCursor(); } mitk::IPreferences* QmitkAbstractView::GetPreferences() const { mitk::CoreServicePointer prefsService(mitk::CoreServices::GetPreferencesService()); auto* prefs = prefsService->GetSystemPreferences(); if (prefs != nullptr) { auto viewSite = const_cast(this)->GetViewSite(); if (viewSite.IsNotNull()) return prefs->Node("/" + viewSite->GetId().toStdString()); } return nullptr; } mitk::DataStorage::Pointer QmitkAbstractView::GetDataStorage() const { mitk::IDataStorageService* dsService = d->m_DataStorageServiceTracker.getService(); if (dsService != nullptr) { return dsService->GetDataStorage()->GetDataStorage(); } return nullptr; } mitk::IDataStorageReference::Pointer QmitkAbstractView::GetDataStorageReference() const { mitk::IDataStorageService* dsService = d->m_DataStorageServiceTracker.getService(); if (dsService != nullptr) { return dsService->GetDataStorage(); } return mitk::IDataStorageReference::Pointer(nullptr); } QList QmitkAbstractView::GetCurrentSelection() const { berry::ISelection::ConstPointer selection( this->GetSite()->GetWorkbenchWindow()->GetSelectionService()->GetSelection()); mitk::DataNodeSelection::ConstPointer currentSelection = selection.Cast(); return d->DataNodeSelectionToQList(currentSelection); } bool QmitkAbstractView::IsCurrentSelectionValid() const { return this->GetSite()->GetWorkbenchWindow()->GetSelectionService()->GetSelection(); } QList QmitkAbstractView::GetDataManagerSelection() const { berry::ISelection::ConstPointer selection( this->GetSite()->GetWorkbenchWindow()->GetSelectionService()->GetSelection("org.mitk.views.datamanager")); mitk::DataNodeSelection::ConstPointer currentSelection = selection.Cast(); return d->DataNodeSelectionToQList(currentSelection); } bool QmitkAbstractView::IsDataManagerSelectionValid() const { return this->GetSite()->GetWorkbenchWindow()->GetSelectionService()->GetSelection("org.mitk.views.datamanager"); } void QmitkAbstractView::SetDataManagerSelection(const berry::ISelection::ConstPointer &selection, QItemSelectionModel::SelectionFlags flags) const { berry::IViewPart::Pointer datamanagerView = this->GetSite()->GetWorkbenchWindow()->GetActivePage()->FindView("org.mitk.views.datamanager"); if (datamanagerView.IsNull()) return; datamanagerView->GetSite()->GetSelectionProvider().Cast()->SetSelection(selection, flags); } void QmitkAbstractView::SynchronizeDataManagerSelection() const { berry::ISelection::ConstPointer currentSelection = this->GetSite()->GetSelectionProvider()->GetSelection(); if (currentSelection.IsNull()) return; SetDataManagerSelection(currentSelection); } void QmitkAbstractView::OnSelectionChanged(berry::IWorkbenchPart::Pointer /*part*/, const QList& /*nodes*/) { } void QmitkAbstractView::OnNullSelection(berry::IWorkbenchPart::Pointer /*part*/) { } QList QmitkAbstractViewPrivate::DataNodeSelectionToQList(mitk::DataNodeSelection::ConstPointer currentSelection) const { if (currentSelection.IsNull()) return QList(); return QList::fromStdList(currentSelection->GetSelectedDataNodes()); } void QmitkAbstractView::NodeAdded( const mitk::DataNode* /*node*/ ) { } void QmitkAbstractView::NodeRemoved( const mitk::DataNode* /*node*/ ) { } void QmitkAbstractView::NodeChanged( const mitk::DataNode* /*node*/ ) { } void QmitkAbstractView::FireNodeSelected( mitk::DataNode::Pointer node ) { QList nodes; nodes << node; this->FireNodesSelected(nodes); } void QmitkAbstractView::FireNodesSelected( const QList& nodes ) { // if this is the first call to FireNodesSelected and the selection provider has no QItemSelectiomMode // yet, set our helper model if (d->m_SelectionProvider->GetItemSelectionModel() == nullptr) { d->m_SelectionProvider->SetItemSelectionModel(d->m_DataNodeSelectionModel); } else if (d->m_SelectionProvider->GetItemSelectionModel() != d->m_DataNodeSelectionModel) { MITK_WARN << "A custom data node selection model has been set. Ignoring call to FireNodesSelected()."; return; } if (nodes.empty()) { d->m_DataNodeSelectionModel->clearSelection(); d->m_DataNodeItemModel->clear(); } else { // The helper data node model is just used for sending selection events. // We add the to be selected nodes and set the selection range to everything. d->m_DataNodeItemModel->clear(); foreach(mitk::DataNode::Pointer node, nodes) { d->m_DataNodeItemModel->AddDataNode(node); } d->m_DataNodeSelectionModel->select(QItemSelection(d->m_DataNodeItemModel->index(0,0), d->m_DataNodeItemModel->index(nodes.size()-1, 0)), QItemSelectionModel::ClearAndSelect); } } diff --git a/Plugins/org.mitk.gui.qt.common/src/QmitkSliceNavigationListener.cpp b/Plugins/org.mitk.gui.qt.common/src/QmitkSliceNavigationListener.cpp index d075ccca6b..01b558111e 100644 --- a/Plugins/org.mitk.gui.qt.common/src/QmitkSliceNavigationListener.cpp +++ b/Plugins/org.mitk.gui.qt.common/src/QmitkSliceNavigationListener.cpp @@ -1,235 +1,250 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ // Qmitk -#include "QmitkRenderWindow.h" -#include "QmitkSliceNavigationListener.h" +#include +#include -#include "mitkIRenderWindowPart.h" +#include +#include // Qt #include #include ///********************************************** QmitkSliceNavigationListener::QmitkSliceNavigationListener() : m_renderWindowPart(nullptr), m_PendingSliceChangedEvent(false), m_CurrentSelectedPosition(std::numeric_limits::lowest()), m_CurrentSelectedTimePoint(std::numeric_limits::lowest()) { } QmitkSliceNavigationListener::~QmitkSliceNavigationListener() { this->RemoveAllObservers(); } mitk::TimePointType QmitkSliceNavigationListener::GetCurrentSelectedTimePoint() const { return m_CurrentSelectedTimePoint; } mitk::Point3D QmitkSliceNavigationListener::GetCurrentSelectedPosition() const { return m_CurrentSelectedPosition; } void QmitkSliceNavigationListener::OnSliceChangedDelayed() { m_PendingSliceChangedEvent = false; emit SliceChanged(); if (nullptr != m_renderWindowPart) { const auto newSelectedPosition = m_renderWindowPart->GetSelectedPosition(); - const auto newSelectedTimePoint = m_renderWindowPart->GetSelectedTimePoint(); if (newSelectedPosition != m_CurrentSelectedPosition) { m_CurrentSelectedPosition = newSelectedPosition; emit SelectedPositionChanged(newSelectedPosition); } - - if (newSelectedTimePoint != m_CurrentSelectedTimePoint) - { - m_CurrentSelectedTimePoint = newSelectedTimePoint; - emit SelectedTimePointChanged(newSelectedTimePoint); - } } } void QmitkSliceNavigationListener::OnSliceChangedInternal(const itk::EventObject&) { // Since there are always 3 events arriving (one for each render window) every time the slice // or time changes, the slot OnSliceChangedDelayed is triggered - and only if it hasn't been // triggered yet - so it is only executed once for every slice/time change. if (!m_PendingSliceChangedEvent) { m_PendingSliceChangedEvent = true; QTimer::singleShot(0, this, SLOT(OnSliceChangedDelayed())); } } +void QmitkSliceNavigationListener::OnTimeChangedInternal(itk::Object* sender, const itk::EventObject& e) +{ + if (!dynamic_cast(&e)) + { + return; + } + + const auto* timeNavigationController = dynamic_cast(sender); + if (nullptr == timeNavigationController) + { + return; + } + + const mitk::TimePointType newSelectedTimePoint = timeNavigationController->GetSelectedTimePoint(); + if (newSelectedTimePoint != m_CurrentSelectedTimePoint) + { + m_CurrentSelectedTimePoint = newSelectedTimePoint; + emit SelectedTimePointChanged(newSelectedTimePoint); + } +} + void QmitkSliceNavigationListener::OnSliceNavigationControllerDeleted(const itk::Object* sender, const itk::EventObject& /*e*/) { const mitk::SliceNavigationController* sendingSlicer = dynamic_cast(sender); this->RemoveObservers(sendingSlicer); } void QmitkSliceNavigationListener::RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart) { if (m_renderWindowPart != renderWindowPart) { m_renderWindowPart = renderWindowPart; + auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + itk::MemberCommand::Pointer cmdTimeEvent = + itk::MemberCommand::New(); + cmdTimeEvent->SetCallbackFunction(this, &QmitkSliceNavigationListener::OnTimeChangedInternal); + m_ControllerToTimeObserverTag = timeNavigationController->AddObserver(mitk::TimeNavigationController::TimeEvent(0), cmdTimeEvent); + if (!InitObservers()) { QMessageBox::information(nullptr, "Error", "Unable to set up the event observers."); } m_CurrentSelectedPosition = m_renderWindowPart->GetSelectedPosition(); - m_CurrentSelectedTimePoint = m_renderWindowPart->GetSelectedTimePoint(); + m_CurrentSelectedTimePoint = timeNavigationController->GetSelectedTimePoint(); } } void QmitkSliceNavigationListener::RenderWindowPartDeactivated(mitk::IRenderWindowPart* renderWindowPart) { m_renderWindowPart = nullptr; this->RemoveAllObservers(renderWindowPart); } void QmitkSliceNavigationListener::RenderWindowPartInputChanged(mitk::IRenderWindowPart* renderWindowPart) { if (m_renderWindowPart == renderWindowPart) { if (!InitObservers()) { QMessageBox::information(nullptr, "Error", "Unable to set up the event observers."); } m_CurrentSelectedPosition = m_renderWindowPart->GetSelectedPosition(); - m_CurrentSelectedTimePoint = m_renderWindowPart->GetSelectedTimePoint(); + + const auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + m_CurrentSelectedTimePoint = timeNavigationController->GetSelectedTimePoint(); } } bool QmitkSliceNavigationListener::InitObservers() { bool result = true; typedef QHash WindowMapType; WindowMapType windowMap = m_renderWindowPart->GetQmitkRenderWindows(); auto i = windowMap.begin(); while (i != windowMap.end()) { - mitk::SliceNavigationController* sliceNavController = - i.value()->GetSliceNavigationController(); + mitk::SliceNavigationController* sliceNavController = i.value()->GetSliceNavigationController(); - if (sliceNavController) + if (nullptr != sliceNavController) { bool observersInitialized = this->ObserversInitialized(sliceNavController); - if(false == observersInitialized) + if (false == observersInitialized) { itk::ReceptorMemberCommand::Pointer cmdSliceEvent = itk::ReceptorMemberCommand::New(); cmdSliceEvent->SetCallbackFunction(this, &QmitkSliceNavigationListener::OnSliceChangedInternal); int tag = sliceNavController->AddObserver( mitk::SliceNavigationController::GeometrySliceEvent(nullptr, 0), cmdSliceEvent); m_ObserverMap.insert(std::make_pair(sliceNavController, ObserverInfo(sliceNavController, tag, i.key().toStdString(), m_renderWindowPart))); - itk::ReceptorMemberCommand::Pointer cmdTimeEvent = - itk::ReceptorMemberCommand::New(); - cmdTimeEvent->SetCallbackFunction(this, &QmitkSliceNavigationListener::OnSliceChangedInternal); - tag = sliceNavController->AddObserver( - mitk::SliceNavigationController::GeometryTimeEvent(nullptr, 0), - cmdTimeEvent); - - m_ObserverMap.insert(std::make_pair(sliceNavController, ObserverInfo(sliceNavController, tag, - i.key().toStdString(), m_renderWindowPart))); - itk::ReceptorMemberCommand::Pointer cmdUpdateEvent = itk::ReceptorMemberCommand::New(); cmdUpdateEvent->SetCallbackFunction(this, &QmitkSliceNavigationListener::OnSliceChangedInternal); tag = sliceNavController->AddObserver( mitk::SliceNavigationController::GeometryUpdateEvent(nullptr, 0), cmdUpdateEvent); m_ObserverMap.insert(std::make_pair(sliceNavController, ObserverInfo(sliceNavController, tag, i.key().toStdString(), m_renderWindowPart))); itk::MemberCommand::Pointer cmdDelEvent = itk::MemberCommand::New(); cmdDelEvent->SetCallbackFunction(this, &QmitkSliceNavigationListener::OnSliceNavigationControllerDeleted); tag = sliceNavController->AddObserver( itk::DeleteEvent(), cmdDelEvent); m_ObserverMap.insert(std::make_pair(sliceNavController, ObserverInfo(sliceNavController, tag, i.key().toStdString(), m_renderWindowPart))); } } ++i; result = result && sliceNavController; } return result; } void QmitkSliceNavigationListener::RemoveObservers(const mitk::SliceNavigationController* deletedSlicer) { std::pair < ObserverMapType::const_iterator, ObserverMapType::const_iterator> obsRange = m_ObserverMap.equal_range(deletedSlicer); for (ObserverMapType::const_iterator pos = obsRange.first; pos != obsRange.second; ++pos) { pos->second.controller->RemoveObserver(pos->second.observerTag); } m_ObserverMap.erase(deletedSlicer); } void QmitkSliceNavigationListener::RemoveAllObservers(mitk::IRenderWindowPart* deletedPart) { for (ObserverMapType::const_iterator pos = m_ObserverMap.begin(); pos != m_ObserverMap.end();) { ObserverMapType::const_iterator delPos = pos++; if (deletedPart == nullptr || deletedPart == delPos->second.renderWindowPart) { delPos->second.controller->RemoveObserver(delPos->second.observerTag); m_ObserverMap.erase(delPos); } } + + auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + timeNavigationController->RemoveObserver(m_ControllerToTimeObserverTag); } bool QmitkSliceNavigationListener::ObserversInitialized(mitk::SliceNavigationController* controller) { auto it = m_ObserverMap.find(controller); return it != m_ObserverMap.end(); } QmitkSliceNavigationListener::ObserverInfo::ObserverInfo(mitk::SliceNavigationController* controller, int observerTag, const std::string& renderWindowName, mitk::IRenderWindowPart* part) : controller(controller), observerTag(observerTag), renderWindowName(renderWindowName), renderWindowPart(part) { } diff --git a/Plugins/org.mitk.gui.qt.common/src/QmitkSliceNavigationListener.h b/Plugins/org.mitk.gui.qt.common/src/QmitkSliceNavigationListener.h index a014d14a49..d075f60572 100644 --- a/Plugins/org.mitk.gui.qt.common/src/QmitkSliceNavigationListener.h +++ b/Plugins/org.mitk.gui.qt.common/src/QmitkSliceNavigationListener.h @@ -1,135 +1,137 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkSliceNavigationListener_h #define QmitkSliceNavigationListener_h #include #include #include #include #include namespace itk { class Object; } namespace mitk { class SliceNavigationController; struct IRenderWindowPart; } /** @brief Helper class to allow QmitkAbstractView and derived classes to react on changes of the slice/time navigation. Purpose of the class to be used in view and to give the respective view class (by composition) the posibility to react on changes of the currently selected timepoint or position in the world geometry.\n It also offers convinient signals that are only triggered when the selected timepoint or the selected possition of the active render window have realy changed.\n In order to setup this class properly the following things must be regarded: - View class must also derive public from mitk::IRenderWindowPartListener - View class must implement void RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart) and pass the renderWindowPart to the listener. void QmitkMyView::RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart) { this->m_SliceNavigationListener.RenderWindowPartActivated(renderWindowPart); } - View class must implement void RenderWindowPartDeactivated(mitk::IRenderWindowPart* renderWindowPart) and pass the renderWindowPart to the listener. void QmitkMyView::RenderWindowPartDeactivated(mitk::IRenderWindowPart* renderWindowPart) { this->m_SliceNavigationListener.RenderWindowPartDeactivated(renderWindowPart); } - View class must pass its on render window part in its CreateQtPartControl(QWidget* parent) this->m_SliceNavigationListener.RenderWindowPartActivated(this->GetRenderWindowPart()); - View class must connect the SliceChanged signal of the listener as see fit. */ class MITK_QT_COMMON QmitkSliceNavigationListener : public QObject { Q_OBJECT public: QmitkSliceNavigationListener(); ~QmitkSliceNavigationListener() override; mitk::TimePointType GetCurrentSelectedTimePoint() const; mitk::Point3D GetCurrentSelectedPosition() const; signals: /** Signal triggered as soon as there is any change. It may be a change in the position/slice or of the selected timepoint.*/ void SliceChanged(); /** Convinience signal that can be used if you are only interested in changes of the current selected time point. Changes in spatial position will be ignored.*/ void SelectedTimePointChanged(const mitk::TimePointType& newTimePoint); /** Convinience signal that can be used if you are only interested in changes of the current selected position. Changes in time will be ignored.*/ void SelectedPositionChanged(const mitk::Point3D& newPoint); public slots: void RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart); void RenderWindowPartDeactivated(mitk::IRenderWindowPart* renderWindowPart); void RenderWindowPartInputChanged(mitk::IRenderWindowPart* renderWindowPart); protected slots: /** Overwrite function to implement the behavior on slice/time changes. */ void OnSliceChangedDelayed(); protected: /** @brief Calls OnSliceChangedDelayed so the event isn't triggered multiple times. */ void OnSliceChangedInternal(const itk::EventObject& e); + void OnTimeChangedInternal(itk::Object* sender, const itk::EventObject& e); void OnSliceNavigationControllerDeleted(const itk::Object* sender, const itk::EventObject& /*e*/); /** Initializes and sets the observers that are used to monitor changes in the selected position or time point in order to actualize the view.h*/ bool InitObservers(); void RemoveObservers(const mitk::SliceNavigationController* deletedSlicer); /** Removes all observers of the deletedPart. If null pointer is passed all observers will be removed.*/ void RemoveAllObservers(mitk::IRenderWindowPart* deletedPart = nullptr); bool ObserversInitialized(mitk::SliceNavigationController* controller); mitk::IRenderWindowPart* m_renderWindowPart; // Needed for observing the events for when a slice or time step is changed. bool m_PendingSliceChangedEvent; /**Helper structure to manage the registered observer events.*/ struct ObserverInfo { mitk::SliceNavigationController* controller; int observerTag; std::string renderWindowName; mitk::IRenderWindowPart* renderWindowPart; ObserverInfo(mitk::SliceNavigationController* controller, int observerTag, const std::string& renderWindowName, mitk::IRenderWindowPart* part); }; typedef std::multimap ObserverMapType; ObserverMapType m_ObserverMap; + unsigned int m_ControllerToTimeObserverTag; mitk::Point3D m_CurrentSelectedPosition; mitk::TimePointType m_CurrentSelectedTimePoint; }; #endif diff --git a/Plugins/org.mitk.gui.qt.dicominspector/src/internal/QmitkDicomInspectorView.cpp b/Plugins/org.mitk.gui.qt.dicominspector/src/internal/QmitkDicomInspectorView.cpp index d3b1171e2c..c0808922fb 100644 --- a/Plugins/org.mitk.gui.qt.dicominspector/src/internal/QmitkDicomInspectorView.cpp +++ b/Plugins/org.mitk.gui.qt.dicominspector/src/internal/QmitkDicomInspectorView.cpp @@ -1,377 +1,389 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ // Blueberry #include #include #include // mitk #include #include #include +#include // Qt #include #include #include #include #include "QmitkDicomInspectorView.h" const std::string QmitkDicomInspectorView::VIEW_ID = "org.mitk.views.dicominspector"; QmitkDicomInspectorView::ObserverInfo::ObserverInfo(mitk::SliceNavigationController* controller, - int observerTag, const std::string& renderWindowName, mitk::IRenderWindowPart* part) : controller(controller), observerTag(observerTag), - renderWindowName(renderWindowName), renderWindowPart(part) + int observerTag, mitk::IRenderWindowPart* part) + : controller(controller) + , observerTag(observerTag) + , renderWindowPart(part) { } QmitkDicomInspectorView::QmitkDicomInspectorView() : m_RenderWindowPart(nullptr) , m_PendingSliceChangedEvent(false) , m_SelectedNode(nullptr) , m_SelectedTimePoint(0.) , m_CurrentSelectedZSlice(0) { m_SelectedPosition.Fill(0.0); } QmitkDicomInspectorView::~QmitkDicomInspectorView() { this->RemoveAllObservers(); } void QmitkDicomInspectorView::RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart) { if (m_RenderWindowPart != renderWindowPart) { m_RenderWindowPart = renderWindowPart; if (!InitObservers()) { QMessageBox::information(nullptr, "Error", "Unable to set up the event observers. The " \ "plot will not be triggered on changing the crosshair, " \ "position or time step."); } } } void QmitkDicomInspectorView::RenderWindowPartDeactivated(mitk::IRenderWindowPart* renderWindowPart) { m_RenderWindowPart = nullptr; this->RemoveAllObservers(renderWindowPart); } void QmitkDicomInspectorView::CreateQtPartControl(QWidget* parent) { // create GUI widgets from the Qt Designer's .ui file m_Controls.setupUi(parent); m_Controls.singleSlot->SetDataStorage(GetDataStorage()); m_Controls.singleSlot->SetSelectionIsOptional(true); m_Controls.singleSlot->SetAutoSelectNewNodes(true); m_Controls.singleSlot->SetEmptyInfo(QString("Please select a data node")); m_Controls.singleSlot->SetPopUpTitel(QString("Select data node")); m_SelectionServiceConnector = std::make_unique(); SetAsSelectionListener(true); m_Controls.timePointValueLabel->setText(QString("")); m_Controls.sliceNumberValueLabel->setText(QString("")); connect(m_Controls.singleSlot, &QmitkSingleNodeSelectionWidget::CurrentSelectionChanged, this, &QmitkDicomInspectorView::OnCurrentSelectionChanged); mitk::IRenderWindowPart* renderWindowPart = GetRenderWindowPart(); RenderWindowPartActivated(renderWindowPart); } bool QmitkDicomInspectorView::InitObservers() { bool result = true; + auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + itk::SimpleMemberCommand::Pointer cmdTimeEvent = + itk::SimpleMemberCommand::New(); + cmdTimeEvent->SetCallbackFunction(this, &QmitkDicomInspectorView::OnTimeChanged); + m_ControllerToTimeObserverTag = timeNavigationController->AddObserver(mitk::TimeNavigationController::TimeEvent(0), cmdTimeEvent); + typedef QHash WindowMapType; WindowMapType windowMap = m_RenderWindowPart->GetQmitkRenderWindows(); auto i = windowMap.begin(); while (i != windowMap.end()) { - mitk::SliceNavigationController* sliceNavController = - i.value()->GetSliceNavigationController(); + mitk::SliceNavigationController* sliceNavController = i.value()->GetSliceNavigationController(); - if (sliceNavController) + if (nullptr != sliceNavController) { auto cmdSliceEvent = itk::SimpleMemberCommand::New(); cmdSliceEvent->SetCallbackFunction(this, &QmitkDicomInspectorView::OnSliceChanged); int tag = sliceNavController->AddObserver( mitk::SliceNavigationController::GeometrySliceEvent(nullptr, 0), cmdSliceEvent); m_ObserverMap.insert(std::make_pair(sliceNavController, ObserverInfo(sliceNavController, tag, - i.key().toStdString(), m_RenderWindowPart))); - - auto cmdTimeEvent = itk::SimpleMemberCommand::New(); - cmdTimeEvent->SetCallbackFunction(this, &QmitkDicomInspectorView::OnSliceChanged); - tag = sliceNavController->AddObserver( - mitk::SliceNavigationController::GeometryTimeEvent(nullptr, 0), cmdTimeEvent); - - m_ObserverMap.insert(std::make_pair(sliceNavController, ObserverInfo(sliceNavController, tag, - i.key().toStdString(), m_RenderWindowPart))); + m_RenderWindowPart))); auto cmdDelEvent = itk::MemberCommand::New(); cmdDelEvent->SetCallbackFunction(this, &QmitkDicomInspectorView::OnSliceNavigationControllerDeleted); tag = sliceNavController->AddObserver(itk::DeleteEvent(), cmdDelEvent); m_ObserverMap.insert(std::make_pair(sliceNavController, ObserverInfo(sliceNavController, tag, - i.key().toStdString(), m_RenderWindowPart))); + m_RenderWindowPart))); } ++i; result = result && sliceNavController; } return result; } void QmitkDicomInspectorView::RemoveObservers(const mitk::SliceNavigationController* deletedSlicer) { std::pair obsRange = m_ObserverMap.equal_range(deletedSlicer); for (ObserverMapType::const_iterator pos = obsRange.first; pos != obsRange.second; ++pos) { pos->second.controller->RemoveObserver(pos->second.observerTag); } m_ObserverMap.erase(deletedSlicer); } void QmitkDicomInspectorView::RemoveAllObservers(mitk::IRenderWindowPart* deletedPart) { for (ObserverMapType::const_iterator pos = m_ObserverMap.begin(); pos != m_ObserverMap.end();) { ObserverMapType::const_iterator delPos = pos++; if (nullptr == deletedPart || deletedPart == delPos->second.renderWindowPart) { delPos->second.controller->RemoveObserver(delPos->second.observerTag); m_ObserverMap.erase(delPos); } } } void QmitkDicomInspectorView::OnCurrentSelectionChanged(QList nodes) { if (nodes.empty() || nodes.front().IsNull()) { m_SelectedNode = nullptr; m_SelectedData = nullptr; UpdateData(); return; } if (nodes.front() != this->m_SelectedNode) { // node is selected, create DICOM tag table m_SelectedNode = nodes.front(); m_SelectedData = this->m_SelectedNode->GetData(); m_SelectedNodeTime.Modified(); UpdateData(); OnSliceChangedDelayed(); } } void QmitkDicomInspectorView::OnSliceChanged() { // Since there are always 3 events arriving (one for each render window) every time the slice // or time changes, the slot OnSliceChangedDelayed is triggered - and only if it hasn't been // triggered yet - so it is only executed once for every slice/time change. if (!m_PendingSliceChangedEvent) { m_PendingSliceChangedEvent = true; QTimer::singleShot(0, this, SLOT(OnSliceChangedDelayed())); } } void QmitkDicomInspectorView::OnSliceNavigationControllerDeleted(const itk::Object* sender, const itk::EventObject& /*e*/) { auto sendingSlicer = dynamic_cast(sender); this->RemoveObservers(sendingSlicer); } void QmitkDicomInspectorView::ValidateAndSetCurrentPosition() { - auto* renderWindowPart = this->GetRenderWindowPart(mitk::WorkbenchUtil::OPEN); - auto currentSelectedPosition = renderWindowPart->GetSelectedPosition(nullptr); - const auto currentSelectedTimePoint = renderWindowPart->GetSelectedTimePoint(); + const auto currentSelectedPosition = m_RenderWindowPart->GetSelectedPosition(); + const auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + const mitk::TimeStepType currentSelectedTimePoint = timeNavigationController->GetSelectedTimePoint(); if (m_SelectedPosition != currentSelectedPosition || m_SelectedTimePoint != currentSelectedTimePoint || m_SelectedNodeTime > m_CurrentPositionTime) { // the current position has been changed, the selected node has been changed since // the last position validation or the current time position has been changed -> check position m_SelectedPosition = currentSelectedPosition; m_SelectedTimePoint = currentSelectedTimePoint; m_CurrentPositionTime.Modified(); m_ValidSelectedPosition = false; if (m_SelectedData.IsNull()) { return; } mitk::BaseGeometry::Pointer geometry = m_SelectedData->GetTimeGeometry()->GetGeometryForTimePoint(m_SelectedTimePoint); // check for invalid time step if (geometry.IsNull()) { geometry = m_SelectedData->GetTimeGeometry()->GetGeometryForTimeStep(0); } if (geometry.IsNull()) { return; } m_ValidSelectedPosition = geometry->IsInside(m_SelectedPosition); itk::Index<3> index; geometry->WorldToIndex(m_SelectedPosition, index); m_CurrentSelectedZSlice = index[2]; } } void QmitkDicomInspectorView::OnSliceChangedDelayed() { m_PendingSliceChangedEvent = false; ValidateAndSetCurrentPosition(); m_Controls.tableTags->setEnabled(m_ValidSelectedPosition); if (m_SelectedNode.IsNotNull()) { RenderTable(); } } +void QmitkDicomInspectorView::OnTimeChanged() +{ + ValidateAndSetCurrentPosition(); + + m_Controls.tableTags->setEnabled(m_ValidSelectedPosition); + + if (m_SelectedNode.IsNotNull()) + { + RenderTable(); + } +} + void QmitkDicomInspectorView::RenderTable() { assert(nullptr != m_RenderWindowPart); const auto timeStep = (m_SelectedData.IsNull()) ? 0 : m_SelectedData->GetTimeGeometry()->TimePointToTimeStep(m_SelectedTimePoint); unsigned int rowIndex = 0; for (const auto& element : m_Tags) { QTableWidgetItem* newItem = new QTableWidgetItem(QString::fromStdString( element.second.prop->GetValue(timeStep, m_CurrentSelectedZSlice, true, true))); m_Controls.tableTags->setItem(rowIndex, 3, newItem); ++rowIndex; } UpdateLabels(); } void QmitkDicomInspectorView::UpdateData() { QStringList headers; m_Controls.tableTags->horizontalHeader()->resizeSections(QHeaderView::ResizeToContents); m_Tags.clear(); if (m_SelectedData.IsNotNull()) { for (const auto& element : *(m_SelectedData->GetPropertyList()->GetMap())) { if (element.first.find("DICOM") == 0) { std::istringstream stream(element.first); std::string token; std::getline(stream, token, '.'); //drop the DICOM suffix std::getline(stream, token, '.'); //group id unsigned long dcmgroup = std::stoul(token, nullptr, 16); std::getline(stream, token, '.'); //element id unsigned long dcmelement = std::stoul(token, nullptr, 16); TagInfo info(mitk::DICOMTag(dcmgroup, dcmelement), dynamic_cast(element.second.GetPointer())); m_Tags.insert(std::make_pair(element.first, info)); } } } m_Controls.tableTags->setRowCount(m_Tags.size()); unsigned int rowIndex = 0; for (const auto& element : m_Tags) { QTableWidgetItem* newItem = new QTableWidgetItem(QString::number(element.second.tag.GetGroup(), 16)); m_Controls.tableTags->setItem(rowIndex, 0, newItem); newItem = new QTableWidgetItem(QString::number(element.second.tag.GetElement(), 16)); m_Controls.tableTags->setItem(rowIndex, 1, newItem); newItem = new QTableWidgetItem(QString::fromStdString(element.second.tag.GetName())); m_Controls.tableTags->setItem(rowIndex, 2, newItem); newItem = new QTableWidgetItem(QString::fromStdString(element.second.prop->GetValue())); m_Controls.tableTags->setItem(rowIndex, 3, newItem); ++rowIndex; } UpdateLabels(); } void QmitkDicomInspectorView::UpdateLabels() { if (m_SelectedData.IsNull()) { m_Controls.timePointValueLabel->setText(QString("")); m_Controls.sliceNumberValueLabel->setText(QString("")); } else { const auto timeStep = m_SelectedData->GetTimeGeometry()->TimePointToTimeStep(m_SelectedTimePoint); if (m_ValidSelectedPosition) { m_Controls.timePointValueLabel->setText(QString::number(timeStep) + QStringLiteral("(")+ QString::number(m_SelectedTimePoint/1000.) + QStringLiteral(" [s])")); m_Controls.sliceNumberValueLabel->setText(QString::number(m_CurrentSelectedZSlice)); } else { m_Controls.timePointValueLabel->setText(QString("outside data geometry")); m_Controls.sliceNumberValueLabel->setText(QString("outside data geometry")); } } } void QmitkDicomInspectorView::SetAsSelectionListener(bool checked) { if (checked) { m_SelectionServiceConnector->AddPostSelectionListener(GetSite()->GetWorkbenchWindow()->GetSelectionService()); connect(m_SelectionServiceConnector.get(), &QmitkSelectionServiceConnector::ServiceSelectionChanged, m_Controls.singleSlot, &QmitkSingleNodeSelectionWidget::SetCurrentSelection); } else { m_SelectionServiceConnector->RemovePostSelectionListener(); disconnect(m_SelectionServiceConnector.get(), &QmitkSelectionServiceConnector::ServiceSelectionChanged, m_Controls.singleSlot, &QmitkSingleNodeSelectionWidget::SetCurrentSelection); } } diff --git a/Plugins/org.mitk.gui.qt.dicominspector/src/internal/QmitkDicomInspectorView.h b/Plugins/org.mitk.gui.qt.dicominspector/src/internal/QmitkDicomInspectorView.h index 5bc3e4aba2..b26f77fd27 100644 --- a/Plugins/org.mitk.gui.qt.dicominspector/src/internal/QmitkDicomInspectorView.h +++ b/Plugins/org.mitk.gui.qt.dicominspector/src/internal/QmitkDicomInspectorView.h @@ -1,155 +1,155 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkDicomInspectorView_h #define QmitkDicomInspectorView_h #include "ui_QmitkDicomInspectorViewControls.h" // Blueberry #include // mitk DICOM module #include #include // mitk gui common plugin #include // mitk gui qt common plugin #include #include /** * @brief View class to inspect all DICOM tags available for the data of a node. */ class QmitkDicomInspectorView : public QmitkAbstractView, public mitk::IRenderWindowPartListener { Q_OBJECT public: QmitkDicomInspectorView(); ~QmitkDicomInspectorView() override; static const std::string VIEW_ID; void SetFocus() override { }; void RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart) override; void RenderWindowPartDeactivated(mitk::IRenderWindowPart* renderWindowPart) override; protected: void CreateQtPartControl(QWidget* parent) override; /** @brief Initializes and sets the observers that are used to monitor changes in the selected position or time point in order to actualize the view*/ bool InitObservers(); /** @brief Removes all observers of the specific deleted slice navigation controller.*/ void RemoveObservers(const mitk::SliceNavigationController* deletedSlicer); /** @brief Removes all observers of the deletedPart. If null pointer is passed all observers will be removed.*/ void RemoveAllObservers(mitk::IRenderWindowPart* deletedPart = nullptr); /** @brief Called by the selection widget when the selection has changed.*/ void OnCurrentSelectionChanged(QList nodes); /** @brief Calls OnSliceChangedDelayed so the event isn't triggered multiple times.*/ void OnSliceChanged(); + void OnTimeChanged(); void OnSliceNavigationControllerDeleted(const itk::Object* sender, const itk::EventObject& /*e*/); /** @brief Sets m_currentSelectedPosition to the current selection and validates if this position is valid * for the input image of the currently selected fit. If it is valid, m_validSelectedPosition is set to true. * If the fit, his input image or geometry is not specified, it will also handled as invalid.*/ void ValidateAndSetCurrentPosition(); private Q_SLOTS: /** @brief Updates the current slice and time is correctly displayed.*/ void OnSliceChangedDelayed(); private: void RenderTable(); /** (Re-)initializes the headers of the data table.*/ void UpdateData(); void UpdateLabels(); void SetAsSelectionListener(bool checked); Ui::QmitkDicomInspectorViewControls m_Controls; mitk::IRenderWindowPart* m_RenderWindowPart; std::unique_ptr m_SelectionServiceConnector; /** Needed for observing the events for when a slice or time step is changed.*/ bool m_PendingSliceChangedEvent; /** Helper structure to manage the registered observer events.*/ struct ObserverInfo { mitk::SliceNavigationController* controller; int observerTag; - std::string renderWindowName; mitk::IRenderWindowPart* renderWindowPart; - ObserverInfo(mitk::SliceNavigationController* controller, int observerTag, - const std::string& renderWindowName, mitk::IRenderWindowPart* part); + ObserverInfo(mitk::SliceNavigationController* controller, int observerTag, mitk::IRenderWindowPart* part); }; typedef std::multimap ObserverMapType; ObserverMapType m_ObserverMap; + unsigned int m_ControllerToTimeObserverTag; /** @brief Currently selected node for the DICOM information.*/ mitk::DataNode::ConstPointer m_SelectedNode; /** @brief Base data of the currently selected node.*/ mitk::BaseData::ConstPointer m_SelectedData; /** @brief Valid selected position in the inspector.*/ mitk::Point3D m_SelectedPosition; /** @brief Indicates if the currently selected position is valid for the currently selected data.*/ bool m_ValidSelectedPosition; mitk::TimePointType m_SelectedTimePoint; itk::IndexValueType m_CurrentSelectedZSlice; /*************************************/ /* Members for visualizing the model */ itk::TimeStamp m_SelectedNodeTime; itk::TimeStamp m_CurrentPositionTime; /**Helper structure to manage the registered observer events.*/ struct TagInfo { mitk::DICOMTag tag; mitk::DICOMProperty::ConstPointer prop; TagInfo(const mitk::DICOMTag& aTag, mitk::DICOMProperty::ConstPointer aProp) : tag(aTag) , prop(aProp) { }; }; typedef std::map TagMapType; TagMapType m_Tags; }; #endif diff --git a/Plugins/org.mitk.gui.qt.eventrecorder/src/internal/InteractionEventRecorder.cpp b/Plugins/org.mitk.gui.qt.eventrecorder/src/internal/InteractionEventRecorder.cpp index 926a63b541..cfdecd38f2 100644 --- a/Plugins/org.mitk.gui.qt.eventrecorder/src/internal/InteractionEventRecorder.cpp +++ b/Plugins/org.mitk.gui.qt.eventrecorder/src/internal/InteractionEventRecorder.cpp @@ -1,152 +1,152 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ // Blueberry #include #include // Qmitk #include "InteractionEventRecorder.h" // Qt #include #include // us #include "usGetModuleContext.h" #include "usModuleContext.h" #include "usModuleResource.h" #include #include #include #include "QmitkRenderWindow.h" US_INITIALIZE_MODULE const std::string InteractionEventRecorder::VIEW_ID = "org.mitk.views.interactioneventrecorder"; void InteractionEventRecorder::SetFocus() { m_Controls.textFileName->setFocus(); } void InteractionEventRecorder::StartRecording() { MITK_INFO << "Start Recording"; MITK_INFO << "Performing Reinit"; mitk::RenderingManager::GetInstance()->InitializeViewsByBoundingObjects(this->GetDataStorage()); m_CurrentObserver->SetOutputFile(m_Controls.textFileName->text().toStdString()); m_CurrentObserver->StartRecording(); } void InteractionEventRecorder::StopRecording() { MITK_INFO << "Stop Recording"; m_CurrentObserver->StopRecording(); } void InteractionEventRecorder::Play() { std::ifstream xmlStream(m_Controls.textFileName->text().toStdString().c_str()); mitk::XML2EventParser parser(xmlStream); mitk::XML2EventParser::EventContainerType events = parser.GetInteractions(); MITK_INFO << "parsed events"; for (std::size_t i=0; i < events.size(); ++i) events.at(i)->GetSender()->GetDispatcher()->ProcessEvent(events.at(i)); MITK_INFO << "DONE"; } void InteractionEventRecorder::OpenFile() { QString fn = QFileDialog::getOpenFileName(nullptr, "Open File...", QString(), "All Files (*)"); if (!fn.isEmpty()) this->m_Controls.textFileName->setText(fn); } void InteractionEventRecorder::RotatePlanes() { mitk::Point3D center; center.Fill(0); mitk::Vector3D firstVec; mitk::Vector3D secondVec; firstVec[0] = 1.0; firstVec[1] = .5; firstVec[2] = .25; secondVec[0] = 1; secondVec[1] = .25; secondVec[2] = 1; // Rotate Planes to a predefined state which can later be used again in tests auto* axialRenderWindow = this->GetRenderWindowPart(mitk::WorkbenchUtil::OPEN)->GetQmitkRenderWindow("axial"); axialRenderWindow->GetSliceNavigationController()->ReorientSlices( center, firstVec,secondVec ); axialRenderWindow->GetRenderer()->RequestUpdate(); } void InteractionEventRecorder::RotateView() { // Rotate the view in 3D to a predefined state which can later be used again in tests // this simulates a prior VTK Interaction auto allRenderWindows = mitk::BaseRenderer::GetAll3DRenderWindows(); for (auto mapit = allRenderWindows.begin(); mapit != allRenderWindows.end(); ++mapit) { vtkRenderWindow* renderWindow = mapit->first; if (renderWindow == nullptr) continue; - mitk::Stepper* stepper = mapit->second->GetCameraRotationController()->GetSlice(); + mitk::Stepper* stepper = mapit->second->GetCameraRotationController()->GetStepper(); if (stepper == nullptr) return; unsigned int newPos = 17; stepper->SetPos(newPos); } } void InteractionEventRecorder::CreateQtPartControl( QWidget *parent ) { // create GUI widgets from the Qt Designer's .ui file m_Controls.setupUi( parent ); connect( m_Controls.btnStopRecording, SIGNAL(clicked()), this, SLOT(StopRecording()) ); connect( m_Controls.btnStartRecording, SIGNAL(clicked()), this, SLOT(StartRecording()) ); connect( m_Controls.btnPlay, SIGNAL(clicked()), this, SLOT(Play()) ); connect( m_Controls.btnOpenFile, SIGNAL(clicked()), this, SLOT(OpenFile()) ); connect( m_Controls.rotatePlanes, SIGNAL(clicked()), this, SLOT(RotatePlanes()) ); connect( m_Controls.rotate3D, SIGNAL(clicked()), this, SLOT(RotateView()) ); m_CurrentObserver = new mitk::EventRecorder(); // Register as listener via micro services us::ServiceProperties props; props["name"] = std::string("EventRecorder"); m_ServiceRegistration = us::GetModuleContext()->RegisterService(m_CurrentObserver,props); /* delete m_CurrentObserverDEBUG; m_ServiceRegistrationDEBUG.Unregister(); */ } diff --git a/Plugins/org.mitk.gui.qt.fit.inspector/src/internal/ModelFitInspectorView.cpp b/Plugins/org.mitk.gui.qt.fit.inspector/src/internal/ModelFitInspectorView.cpp index 2a44448ab0..50ae633df5 100644 --- a/Plugins/org.mitk.gui.qt.fit.inspector/src/internal/ModelFitInspectorView.cpp +++ b/Plugins/org.mitk.gui.qt.fit.inspector/src/internal/ModelFitInspectorView.cpp @@ -1,920 +1,918 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ +#include "ModelFitInspectorView.h" // Blueberry #include #include #include // mitk #include // Qt #include #include #include #include -#include "QmitkPlotWidget.h" - -#include "mitkNodePredicateFunction.h" -#include "mitkScalarListLookupTableProperty.h" -#include "mitkModelFitConstants.h" -#include "mitkExtractTimeGrid.h" -#include "mitkModelGenerator.h" -#include "mitkModelFitException.h" -#include "mitkModelFitParameterValueExtraction.h" -#include "mitkTimeGridHelper.h" -#include "mitkModelFitResultRelationRule.h" - -#include "mitkModelFitPlotDataHelper.h" - -#include "ModelFitInspectorView.h" +#include + +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include const std::string ModelFitInspectorView::VIEW_ID = "org.mitk.views.fit.inspector"; const unsigned int ModelFitInspectorView::INTERPOLATION_STEPS = 10; const std::string DEFAULT_X_AXIS = "Time [s]"; ModelFitInspectorView::ModelFitInspectorView() : m_renderWindowPart(nullptr), m_internalUpdateFlag(false), m_currentFit(nullptr), m_currentModelParameterizer(nullptr), m_currentModelProviderService(nullptr), m_currentSelectedTimeStep(0), m_currentSelectedNode(nullptr) { m_currentSelectedPosition.Fill(0.0); m_modelfitList.clear(); } ModelFitInspectorView::~ModelFitInspectorView() { } void ModelFitInspectorView::RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart) { if (m_renderWindowPart != renderWindowPart) { m_renderWindowPart = renderWindowPart; } this->m_SliceChangeListener.RenderWindowPartActivated(renderWindowPart); } void ModelFitInspectorView::RenderWindowPartDeactivated( mitk::IRenderWindowPart* renderWindowPart) { m_renderWindowPart = nullptr; this->m_SliceChangeListener.RenderWindowPartDeactivated(renderWindowPart); } void ModelFitInspectorView::CreateQtPartControl(QWidget* parent) { m_Controls.setupUi(parent); m_SelectionServiceConnector = std::make_unique(); m_SelectionServiceConnector->AddPostSelectionListener(this->GetSite()->GetWorkbenchWindow()->GetSelectionService()); m_Controls.inputNodeSelector->SetDataStorage(GetDataStorage()); m_Controls.inputNodeSelector->SetEmptyInfo(QString("Please select input data to be viewed.")); m_Controls.inputNodeSelector->SetInvalidInfo(QString("No input data is selected")); m_Controls.inputNodeSelector->SetPopUpTitel(QString("Choose 3D+t input data that should be viewed!")); m_Controls.inputNodeSelector->SetSelectionIsOptional(false); m_Controls.inputNodeSelector->SetSelectOnlyVisibleNodes(true); auto predicate = mitk::NodePredicateFunction::New([](const mitk::DataNode *node) { bool isModelFitNode = node->GetData() && node->GetData()->GetProperty(mitk::ModelFitConstants::FIT_UID_PROPERTY_NAME().c_str()).IsNotNull(); return isModelFitNode || (node && node->GetData() && node->GetData()->GetTimeSteps() > 1); }); m_Controls.inputNodeSelector->SetNodePredicate(predicate); connect(m_SelectionServiceConnector.get(), &QmitkSelectionServiceConnector::ServiceSelectionChanged, m_Controls.inputNodeSelector, &QmitkSingleNodeSelectionWidget::SetCurrentSelection); connect(m_Controls.inputNodeSelector, &QmitkAbstractNodeSelectionWidget::CurrentSelectionChanged, this, &ModelFitInspectorView::OnInputChanged); this->m_SliceChangeListener.RenderWindowPartActivated(this->GetRenderWindowPart()); connect(&m_SliceChangeListener, SIGNAL(SliceChanged()), this, SLOT(OnSliceChanged())); connect(m_Controls.cmbFit, SIGNAL(currentIndexChanged(int)), this, SLOT(OnFitSelectionChanged(int))); connect(m_Controls.radioScaleFixed, SIGNAL(toggled(bool)), m_Controls.sbFixMin, SLOT(setEnabled(bool))); connect(m_Controls.radioScaleFixed, SIGNAL(toggled(bool)), m_Controls.sbFixMax, SLOT(setEnabled(bool))); connect(m_Controls.radioScaleFixed, SIGNAL(toggled(bool)), m_Controls.labelFixMin, SLOT(setEnabled(bool))); connect(m_Controls.radioScaleFixed, SIGNAL(toggled(bool)), m_Controls.labelFixMax, SLOT(setEnabled(bool))); connect(m_Controls.radioScaleFixed, SIGNAL(toggled(bool)), m_Controls.btnScaleToData, SLOT(setEnabled(bool))); connect(m_Controls.radioScaleFixed, SIGNAL(toggled(bool)), this, SLOT(OnScaleFixedYChecked(bool))); connect(m_Controls.btnScaleToData, SIGNAL(clicked()), this, SLOT(OnScaleToDataYClicked())); connect(m_Controls.sbFixMax, SIGNAL(valueChanged(double)), this, SLOT(OnFixedScalingYChanged(double))); connect(m_Controls.sbFixMin, SIGNAL(valueChanged(double)), this, SLOT(OnFixedScalingYChanged(double))); connect(m_Controls.radioScaleFixed_x, SIGNAL(toggled(bool)), m_Controls.sbFixMin_x, SLOT(setEnabled(bool))); connect(m_Controls.radioScaleFixed_x, SIGNAL(toggled(bool)), m_Controls.sbFixMax_x, SLOT(setEnabled(bool))); connect(m_Controls.radioScaleFixed_x, SIGNAL(toggled(bool)), m_Controls.labelFixMin_x, SLOT(setEnabled(bool))); connect(m_Controls.radioScaleFixed_x, SIGNAL(toggled(bool)), m_Controls.labelFixMax_x, SLOT(setEnabled(bool))); connect(m_Controls.radioScaleFixed_x, SIGNAL(toggled(bool)), m_Controls.btnScaleToData_x, SLOT(setEnabled(bool))); connect(m_Controls.radioScaleFixed_x, SIGNAL(toggled(bool)), this, SLOT(OnScaleFixedXChecked(bool))); connect(m_Controls.btnScaleToData_x, SIGNAL(clicked()), this, SLOT(OnScaleToDataXClicked())); connect(m_Controls.sbFixMax_x, SIGNAL(valueChanged(double)), this, SLOT(OnFixedScalingXChanged(double))); connect(m_Controls.sbFixMin_x, SIGNAL(valueChanged(double)), this, SLOT(OnFixedScalingXChanged(double))); connect(m_Controls.btnFullPlot, SIGNAL(clicked(bool)), this, SLOT(OnFullPlotClicked(bool))); this->EnsureBookmarkPointSet(); m_Controls.inspectionPositionWidget->SetPositionBookmarkNode(m_PositionBookmarksNode.Lock()); connect(m_Controls.inspectionPositionWidget, SIGNAL(PositionBookmarksChanged()), this, SLOT(OnPositionBookmarksChanged())); // For some reason this needs to be called to set the plot widget's minimum width to an // acceptable level (since Qwt 6). // Otherwise it tries to keep both axes equal in length, resulting in a minimum width of // 400-500px which is way too much. m_Controls.widgetPlot->GetPlot()->updateAxes(); m_Controls.cmbFit->clear(); mitk::IRenderWindowPart* renderWindowPart = GetRenderWindowPart(); RenderWindowPartActivated(renderWindowPart); } void ModelFitInspectorView::SetFocus() { } void ModelFitInspectorView::NodeRemoved(const mitk::DataNode* node) { if (node == this->m_currentSelectedNode) { QmitkSingleNodeSelectionWidget::NodeList emptylist; this->m_Controls.inputNodeSelector->SetCurrentSelection(emptylist); } } void ModelFitInspectorView::OnScaleFixedYChecked(bool checked) { m_Controls.widgetPlot->GetPlot()->setAxisAutoScale(QwtPlot::yLeft, !checked); if (checked) { OnScaleToDataYClicked(); } m_Controls.widgetPlot->GetPlot()->replot(); }; void ModelFitInspectorView::OnScaleFixedXChecked(bool checked) { m_Controls.widgetPlot->GetPlot()->setAxisAutoScale(QwtPlot::xBottom, !checked); if (checked) { OnScaleToDataXClicked(); } m_Controls.widgetPlot->GetPlot()->replot(); }; void ModelFitInspectorView::OnScaleToDataYClicked() { auto minmax = this->m_PlotCurves.GetYMinMax(); auto min = minmax.first - std::abs(minmax.first) * 0.01; auto max = minmax.second + std::abs(minmax.second) * 0.01; m_Controls.sbFixMin->setValue(min); m_Controls.sbFixMax->setValue(max); }; void ModelFitInspectorView::OnScaleToDataXClicked() { auto minmax = this->m_PlotCurves.GetXMinMax(); auto min = minmax.first - std::abs(minmax.first) * 0.01; auto max = minmax.second + std::abs(minmax.second) * 0.01; m_Controls.sbFixMin_x->setValue(min); m_Controls.sbFixMax_x->setValue(max); }; void ModelFitInspectorView::OnFixedScalingYChanged(double /*value*/) { m_Controls.widgetPlot->GetPlot()->setAxisScale(QwtPlot::yLeft, m_Controls.sbFixMin->value(), m_Controls.sbFixMax->value()); m_Controls.widgetPlot->GetPlot()->replot(); }; void ModelFitInspectorView::OnFixedScalingXChanged(double /*value*/) { m_Controls.widgetPlot->GetPlot()->setAxisScale(QwtPlot::xBottom, m_Controls.sbFixMin_x->value(), m_Controls.sbFixMax_x->value()); m_Controls.widgetPlot->GetPlot()->replot(); }; void ModelFitInspectorView::OnFullPlotClicked(bool checked) { m_Controls.tabWidget->setVisible(!checked); }; int ModelFitInspectorView::ActualizeFitSelectionWidget() { mitk::modelFit::ModelFitInfo::UIDType selectedFitUD = ""; bool isModelFitNode = false; if (this->m_Controls.inputNodeSelector->GetSelectedNode().IsNotNull()) { isModelFitNode = this->m_Controls.inputNodeSelector->GetSelectedNode()->GetData()->GetPropertyList()->GetStringProperty( mitk::ModelFitConstants::FIT_UID_PROPERTY_NAME().c_str(), selectedFitUD); } mitk::DataStorage::Pointer storage = this->GetDataStorage(); mitk::modelFit::NodeUIDSetType fitUIDs = mitk::modelFit::GetFitUIDsOfNode( this->m_currentSelectedNode, storage); this->m_modelfitList.clear(); this->m_Controls.cmbFit->clear(); for (const auto & fitUID : fitUIDs) { mitk::modelFit::ModelFitInfo::ConstPointer info = mitk::modelFit::CreateFitInfoFromNode(fitUID, storage).GetPointer(); if (info.IsNotNull()) { this->m_modelfitList.insert(std::make_pair(info->uid, info)); std::ostringstream nameStrm; if (info->fitName.empty()) { nameStrm << info->uid; } else { nameStrm << info->fitName; } nameStrm << " (" << info->modelName << ")"; QVariant data(info->uid.c_str()); m_Controls.cmbFit->addItem(QString::fromStdString(nameStrm.str()), data); } else { MITK_ERROR << "Was not able to extract model fit information from storage. Node properties in storage may be invalid. Failed fit UID:" << fitUID; } } int cmbIndex = 0; if (m_modelfitList.empty()) { cmbIndex = -1; }; if (isModelFitNode) { //model was selected, thus select this one in combobox QVariant data(selectedFitUD.c_str()); cmbIndex = m_Controls.cmbFit->findData(data); if (cmbIndex == -1) { MITK_WARN << "Model fit Inspector in invalid state. Selected fit seems to be not avaible in plugin selection. Failed fit UID:" << selectedFitUD; } }; m_Controls.cmbFit->setCurrentIndex(cmbIndex); return cmbIndex; } void ModelFitInspectorView::OnInputChanged(const QList& nodes) { if (nodes.size() > 0) { if (nodes.front() != this->m_currentSelectedNode) { m_internalUpdateFlag = true; this->m_currentSelectedNode = nodes.front(); mitk::modelFit::ModelFitInfo::UIDType selectedFitUD = ""; bool isModelFitNode = this->m_currentSelectedNode->GetData()->GetPropertyList()->GetStringProperty( mitk::ModelFitConstants::FIT_UID_PROPERTY_NAME().c_str(), selectedFitUD); if (isModelFitNode) { this->m_currentSelectedNode = this->GetInputNode(this->m_currentSelectedNode); if (this->m_currentSelectedNode.IsNull()) { MITK_WARN << "Model fit Inspector in invalid state. Input image for selected fit cannot be found in data storage. Failed fit UID:" << selectedFitUD; } } auto cmbIndex = ActualizeFitSelectionWidget(); m_internalUpdateFlag = false; m_selectedNodeTime.Modified(); if (cmbIndex == -1) { //only raw 4D data selected. Just update plots for current position m_currentFit = nullptr; m_currentFitTime.Modified(); OnSliceChanged(); m_Controls.plotDataWidget->SetXName(DEFAULT_X_AXIS); } else { //refresh fit selection (and implicitly update plots) OnFitSelectionChanged(cmbIndex); } } } else { if (this->m_currentSelectedNode.IsNotNull()) { m_internalUpdateFlag = true; this->m_currentSelectedNode = nullptr; this->m_currentFit = nullptr; this->m_modelfitList.clear(); this->m_Controls.cmbFit->clear(); m_internalUpdateFlag = false; m_selectedNodeTime.Modified(); OnFitSelectionChanged(0); RefreshPlotData(); m_Controls.plotDataWidget->SetPlotData(&(this->m_PlotCurves)); m_Controls.fitParametersWidget->setFits(QmitkFitParameterModel::FitVectorType()); RenderPlot(); } } } mitk::DataNode::ConstPointer ModelFitInspectorView::GetInputNode(mitk::DataNode::ConstPointer node) { if (node.IsNotNull()) { std::string selectedFitUD = ""; auto rule = mitk::ModelFitResultRelationRule::New(); auto predicate = rule->GetDestinationsDetector(node); mitk::DataStorage::SetOfObjects::ConstPointer parentNodeList = GetDataStorage()->GetSubset(predicate); if (parentNodeList->size() > 0) { return parentNodeList->front().GetPointer(); } } return mitk::DataNode::ConstPointer(); } void ModelFitInspectorView::ValidateAndSetCurrentPosition() { - mitk::Point3D currentSelectedPosition = GetRenderWindowPart(mitk::WorkbenchUtil::OPEN)->GetSelectedPosition(nullptr); - unsigned int currentSelectedTimestep = m_renderWindowPart->GetTimeNavigationController()->GetTime()-> - GetPos(); + const mitk::Point3D currentSelectedPosition = GetRenderWindowPart(mitk::WorkbenchUtil::OPEN)->GetSelectedPosition(nullptr); + const unsigned int currentSelectedTimestep = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimeStep(); if (m_currentSelectedPosition != currentSelectedPosition || m_currentSelectedTimeStep != currentSelectedTimestep || m_selectedNodeTime > m_currentPositionTime) { //the current position has been changed or the selected node has been changed since the last position validation -> check position m_currentSelectedPosition = currentSelectedPosition; m_currentSelectedTimeStep = currentSelectedTimestep; m_currentPositionTime.Modified(); m_validSelectedPosition = false; auto inputImage = this->GetCurrentInputImage(); if (inputImage.IsNull()) { return; } mitk::BaseGeometry::ConstPointer geometry = inputImage->GetTimeGeometry()->GetGeometryForTimeStep( m_currentSelectedTimeStep).GetPointer(); // check for invalid time step if (geometry.IsNull()) { geometry = inputImage->GetTimeGeometry()->GetGeometryForTimeStep(0); } if (geometry.IsNull()) { return; } m_validSelectedPosition = geometry->IsInside(m_currentSelectedPosition); } } mitk::Image::ConstPointer ModelFitInspectorView::GetCurrentInputImage() const { mitk::Image::ConstPointer result = nullptr; if (this->m_currentFit.IsNotNull()) { result = m_currentFit->inputImage; } else if (this->m_currentSelectedNode.IsNotNull()) { result = dynamic_cast(this->m_currentSelectedNode->GetData()); if (result.IsNotNull() && result->GetTimeSteps() <= 1) { //if the image is not dynamic, we can't use it. result = nullptr; } } return result; }; const mitk::ModelBase::TimeGridType ModelFitInspectorView::GetCurrentTimeGrid() const { if (m_currentModelProviderService && m_currentFit.IsNotNull()) { return m_currentModelProviderService->GetVariableGrid(m_currentFit); } else { //fall back if there is no model provider we assume to use the normal time grid. return ExtractTimeGrid(GetCurrentInputImage()); } }; void ModelFitInspectorView::OnSliceChanged() { ValidateAndSetCurrentPosition(); m_Controls.widgetPlot->setEnabled(m_validSelectedPosition); if (m_currentSelectedNode.IsNotNull()) { m_Controls.inspectionPositionWidget->SetCurrentPosition(m_currentSelectedPosition); if (RefreshPlotData()) { RenderPlot(); m_Controls.plotDataWidget->SetPlotData(&m_PlotCurves); RenderFitInfo(); } } } void ModelFitInspectorView::OnPositionBookmarksChanged() { if (RefreshPlotData()) { RenderPlot(); m_Controls.plotDataWidget->SetPlotData(&m_PlotCurves); RenderFitInfo(); } } void ModelFitInspectorView::OnFitSelectionChanged(int index) { if (!m_internalUpdateFlag) { MITK_DEBUG << "selected fit index: " << index; std::string uid = ""; if (m_Controls.cmbFit->count() > index) { uid = m_Controls.cmbFit->itemData(index).toString().toStdString(); } mitk::modelFit::ModelFitInfo::ConstPointer newFit = nullptr; ModelFitInfoListType::iterator finding = m_modelfitList.find(uid); if (finding != m_modelfitList.end()) { newFit = finding->second; } if (m_currentFit != newFit) { m_currentModelParameterizer = nullptr; m_currentModelProviderService = nullptr; if (newFit.IsNotNull()) { m_currentModelParameterizer = mitk::ModelGenerator::GenerateModelParameterizer(*newFit); m_currentModelProviderService = mitk::ModelGenerator::GetProviderService(newFit->functionClassID); } m_currentFit = newFit; m_currentFitTime.Modified(); auto name = m_currentFit->xAxisName; if (!m_currentFit->xAxisUnit.empty()) { name += " [" + m_currentFit->xAxisUnit + "]"; } m_Controls.plotDataWidget->SetXName(name); OnSliceChanged(); } } } mitk::PlotDataCurveCollection::Pointer ModelFitInspectorView::RefreshPlotDataCurveCollection(const mitk::Point3D& position, const mitk::Image* input, const mitk::modelFit::ModelFitInfo* fitInfo, const mitk::ModelBase::TimeGridType& timeGrid, mitk::ModelParameterizerBase* parameterizer) { mitk::PlotDataCurveCollection::Pointer result = mitk::PlotDataCurveCollection::New(); //sample curve if (input) { result->InsertElement(mitk::MODEL_FIT_PLOT_SAMPLE_NAME(), GenerateImageSamplePlotData(position, input, timeGrid)); } //model signal curve if (fitInfo) { // Interpolate time grid (x values) so the curve looks smooth const mitk::ModelBase::TimeGridType interpolatedTimeGrid = mitk::GenerateSupersampledTimeGrid(timeGrid, INTERPOLATION_STEPS); auto hires_curve = mitk::GenerateModelSignalPlotData(position, fitInfo, interpolatedTimeGrid, parameterizer); result->InsertElement(mitk::MODEL_FIT_PLOT_INTERPOLATED_SIGNAL_NAME(), hires_curve); auto curve = mitk::GenerateModelSignalPlotData(position, fitInfo, timeGrid, parameterizer); result->InsertElement(mitk::MODEL_FIT_PLOT_SIGNAL_NAME(), curve); } return result; }; bool ModelFitInspectorView::RefreshPlotData() { bool changed = false; if (m_currentSelectedNode.IsNull()) { this->m_PlotCurves = mitk::ModelFitPlotData(); changed = m_selectedNodeTime > m_lastRefreshTime; m_lastRefreshTime.Modified(); } else { assert(GetRenderWindowPart() != NULL); const mitk::Image* input = GetCurrentInputImage(); const mitk::ModelBase::TimeGridType timeGrid = GetCurrentTimeGrid(); if (m_currentFitTime > m_lastRefreshTime || m_currentPositionTime > m_lastRefreshTime) { if (m_validSelectedPosition) { m_PlotCurves.currentPositionPlots = RefreshPlotDataCurveCollection(m_currentSelectedPosition,input,m_currentFit, timeGrid, m_currentModelParameterizer); } else { m_PlotCurves.currentPositionPlots = mitk::PlotDataCurveCollection::New(); } changed = true; } auto bookmarks = m_PositionBookmarks.Lock(); if (bookmarks.IsNotNull()) { if (m_currentFitTime > m_lastRefreshTime || bookmarks->GetMTime() > m_lastRefreshTime) { m_PlotCurves.positionalPlots.clear(); auto endIter = bookmarks->End(); for (auto iter = bookmarks->Begin(); iter != endIter; iter++) { auto collection = RefreshPlotDataCurveCollection(iter.Value(), input, m_currentFit, timeGrid, m_currentModelParameterizer); m_PlotCurves.positionalPlots.emplace(iter.Index(), std::make_pair(iter.Value(), collection)); } changed = true; } } else { m_PlotCurves.positionalPlots.clear(); } // input data curve if (m_currentFitTime > m_lastRefreshTime) { m_PlotCurves.staticPlots->clear(); if (m_currentFit.IsNotNull()) { m_PlotCurves.staticPlots = GenerateAdditionalModelFitPlotData(m_currentSelectedPosition, m_currentFit, timeGrid); } changed = true; } m_lastRefreshTime.Modified(); } return changed; } void ModelFitInspectorView::RenderFitInfo() { assert(m_renderWindowPart != nullptr); // configure fit information if (m_currentFit.IsNull()) { m_Controls.lFitType->setText(""); m_Controls.lFitUID->setText(""); m_Controls.lModelName->setText(""); m_Controls.lModelType->setText(""); } else { m_Controls.lFitType->setText(QString::fromStdString(m_currentFit->fitType)); m_Controls.lFitUID->setText(QString::fromStdString(m_currentFit->uid)); m_Controls.lModelName->setText(QString::fromStdString(m_currentFit->modelName)); m_Controls.lModelType->setText(QString::fromStdString(m_currentFit->modelType)); } // print results std::stringstream infoOutput; m_Controls.fitParametersWidget->setVisible(false); m_Controls.groupSettings->setVisible(false); if (m_currentFit.IsNull()) { infoOutput << "No fit selected. Only raw image data is plotted."; } else if (!m_validSelectedPosition) { infoOutput << "Current position is outside of the input image of the selected fit.\nInspector is deactivated."; } else { m_Controls.fitParametersWidget->setVisible(true); m_Controls.fitParametersWidget->setFits({ m_currentFit }); m_Controls.fitParametersWidget->setPositionBookmarks(m_PositionBookmarks.Lock()); m_Controls.fitParametersWidget->setCurrentPosition(m_currentSelectedPosition); } // configure data table m_Controls.tableInputData->clearContents(); if (m_currentFit.IsNull()) { infoOutput << "No fit selected. Only raw image data is plotted."; } else { m_Controls.groupSettings->setVisible(true); m_Controls.tableInputData->setRowCount(m_PlotCurves.staticPlots->size()); unsigned int rowIndex = 0; for (mitk::PlotDataCurveCollection::const_iterator pos = m_PlotCurves.staticPlots->begin(); pos != m_PlotCurves.staticPlots->end(); ++pos, ++rowIndex) { QColor dataColor; if (pos->first == "ROI") { dataColor = QColor(0, 190, 0); } else { //Use HSV schema of QColor to calculate a different color depending on the //number of already existing free iso lines. dataColor.setHsv(((rowIndex + 1) * 85) % 360, 255, 255); } QTableWidgetItem* newItem = new QTableWidgetItem(QString::fromStdString(pos->first)); m_Controls.tableInputData->setItem(rowIndex, 0, newItem); newItem = new QTableWidgetItem(); newItem->setBackgroundColor(dataColor); m_Controls.tableInputData->setItem(rowIndex, 1, newItem); } } m_Controls.lInfo->setText(QString::fromStdString(infoOutput.str())); } void ModelFitInspectorView::RenderPlotCurve(const mitk::PlotDataCurveCollection* curveCollection, const QColor& sampleColor, const QColor& signalColor, const std::string& posString) { auto sampleCurve = mitk::ModelFitPlotData::GetSamplePlot(curveCollection); if (sampleCurve) { std::string name = mitk::MODEL_FIT_PLOT_SAMPLE_NAME() + posString; unsigned int curveId = m_Controls.widgetPlot->InsertCurve(name.c_str()); m_Controls.widgetPlot->SetCurveData(curveId, sampleCurve->GetValues()); m_Controls.widgetPlot->SetCurvePen(curveId, QPen(Qt::NoPen)); // QwtSymbol needs to passed as a real pointer from MITK v2013.09.0 on // (QwtPlotCurve deletes it on destruction and assignment). QwtSymbol* dataSymbol = new QwtSymbol(QwtSymbol::Diamond, sampleColor, sampleColor, QSize(8, 8)); m_Controls.widgetPlot->SetCurveSymbol(curveId, dataSymbol); // Again, there is no way to set a curve's legend attributes via QmitkPlotWidget so this // gets unnecessarily complicated. QwtPlotCurve* measurementCurve = dynamic_cast(m_Controls.widgetPlot-> GetPlot()->itemList(QwtPlotItem::Rtti_PlotCurve).back()); measurementCurve->setLegendAttribute(QwtPlotCurve::LegendShowSymbol); measurementCurve->setLegendIconSize(QSize(8, 8)); } //draw model curve auto signalCurve = mitk::ModelFitPlotData::GetInterpolatedSignalPlot(curveCollection); if (signalCurve) { std::string name = mitk::MODEL_FIT_PLOT_SIGNAL_NAME() + posString; QPen pen; pen.setColor(signalColor); pen.setWidth(2); unsigned int curveId = m_Controls.widgetPlot->InsertCurve(name.c_str()); m_Controls.widgetPlot->SetCurveData(curveId, signalCurve->GetValues()); m_Controls.widgetPlot->SetCurvePen(curveId, pen); // Manually set the legend attribute to use the symbol as the legend icon and alter its // size. Otherwise it would revert to default which is drawing a square which is the color // of the curve's pen, so in this case none which defaults to black. // Unfortunately, QmitkPlotWidget offers no way to set the legend attribute and icon size so // this looks a bit hacky. QwtPlotCurve* fitCurve = dynamic_cast(m_Controls.widgetPlot->GetPlot()-> itemList(QwtPlotItem::Rtti_PlotCurve).back()); fitCurve->setLegendAttribute(QwtPlotCurve::LegendShowLine); } } void ModelFitInspectorView::RenderPlot() { m_Controls.widgetPlot->Clear(); std::string xAxis = DEFAULT_X_AXIS; std::string yAxis = "Intensity"; std::string plotTitle = "Raw data plot: no data"; if (m_currentSelectedNode.IsNotNull()) { plotTitle = "Raw data plot: " + m_currentSelectedNode->GetName(); } if (m_currentFit.IsNotNull()) { plotTitle = m_currentFit->modelName.c_str(); xAxis = m_currentFit->xAxisName; if (!m_currentFit->xAxisUnit.empty()) { xAxis += " [" + m_currentFit->xAxisUnit + "]"; } yAxis = m_currentFit->yAxisName; if (!m_currentFit->yAxisUnit.empty()) { yAxis += " [" + m_currentFit->yAxisUnit + "]"; } } m_Controls.widgetPlot->SetAxisTitle(QwtPlot::xBottom, xAxis.c_str()); m_Controls.widgetPlot->SetAxisTitle(QwtPlot::yLeft, yAxis.c_str()); m_Controls.widgetPlot->SetPlotTitle(plotTitle.c_str()); // Draw static curves unsigned int colorIndex = 0; for (mitk::PlotDataCurveCollection::const_iterator pos = m_PlotCurves.staticPlots->begin(); pos != m_PlotCurves.staticPlots->end(); ++pos) { QColor dataColor; unsigned int curveId = m_Controls.widgetPlot->InsertCurve(pos->first.c_str()); m_Controls.widgetPlot->SetCurveData(curveId, pos->second->GetValues()); if (pos->first == "ROI") { dataColor = QColor(0, 190, 0); QPen pen; pen.setColor(dataColor); pen.setStyle(Qt::SolidLine); m_Controls.widgetPlot->SetCurvePen(curveId, pen); } else { //Use HSV schema of QColor to calculate a different color depending on the //number of already existing curves. dataColor.setHsv((++colorIndex * 85) % 360, 255, 150); m_Controls.widgetPlot->SetCurvePen(curveId, QPen(Qt::NoPen)); } // QwtSymbol needs to passed as a real pointer from MITK v2013.09.0 on // (QwtPlotCurve deletes it on destruction and assignment). QwtSymbol* dataSymbol = new QwtSymbol(QwtSymbol::Triangle, dataColor, dataColor, QSize(8, 8)); m_Controls.widgetPlot->SetCurveSymbol(curveId, dataSymbol); // Again, there is no way to set a curve's legend attributes via QmitkPlotWidget so this // gets unnecessarily complicated. QwtPlotCurve* measurementCurve = dynamic_cast(m_Controls.widgetPlot-> GetPlot()->itemList(QwtPlotItem::Rtti_PlotCurve).back()); measurementCurve->setLegendAttribute(QwtPlotCurve::LegendShowSymbol); measurementCurve->setLegendIconSize(QSize(8, 8)); } // Draw positional curves for (const auto& posIter : this->m_PlotCurves.positionalPlots) { QColor dataColor; dataColor.setHsv((++colorIndex * 85) % 360, 255, 150); this->RenderPlotCurve(posIter.second.second, dataColor, dataColor, " @ "+mitk::ModelFitPlotData::GetPositionalCollectionName(posIter)); } // Draw current pos curve this->RenderPlotCurve(m_PlotCurves.currentPositionPlots, QColor(Qt::red), QColor(Qt::black), ""); QwtLegend* legend = new QwtLegend(); legend->setFrameShape(QFrame::Box); legend->setFrameShadow(QFrame::Sunken); legend->setLineWidth(1); m_Controls.widgetPlot->SetLegend(legend, QwtPlot::BottomLegend); m_Controls.widgetPlot->Replot(); } void ModelFitInspectorView::EnsureBookmarkPointSet() { if (m_PositionBookmarks.IsExpired() || m_PositionBookmarksNode.IsExpired()) { const char* nodeName = "org.mitk.gui.qt.fit.inspector.positions"; mitk::DataNode::Pointer node = this->GetDataStorage()->GetNamedNode(nodeName); if (!node) { node = mitk::DataNode::New(); node->SetName(nodeName); node->SetBoolProperty("helper object", true); this->GetDataStorage()->Add(node); } m_PositionBookmarksNode = node; mitk::PointSet::Pointer pointSet = dynamic_cast(node->GetData()); if (pointSet.IsNull()) { pointSet = mitk::PointSet::New(); node->SetData(pointSet); } m_PositionBookmarks = pointSet; } } diff --git a/Plugins/org.mitk.gui.qt.imagecropper/src/internal/QmitkImageCropperView.cpp b/Plugins/org.mitk.gui.qt.imagecropper/src/internal/QmitkImageCropperView.cpp index a57eab8f0e..6d4155a084 100644 --- a/Plugins/org.mitk.gui.qt.imagecropper/src/internal/QmitkImageCropperView.cpp +++ b/Plugins/org.mitk.gui.qt.imagecropper/src/internal/QmitkImageCropperView.cpp @@ -1,512 +1,512 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkImageCropperView.h" #include #include #include #include #include #include #include #include #include #include #include #include #include const std::string QmitkImageCropperView::VIEW_ID = "org.mitk.views.qmitkimagecropper"; QmitkImageCropperView::QmitkImageCropperView(QObject *) : m_ParentWidget(nullptr) , m_BoundingShapeInteractor(nullptr) , m_CropOutsideValue(0) { CreateBoundingShapeInteractor(false); } QmitkImageCropperView::~QmitkImageCropperView() { //disable interactor if (m_BoundingShapeInteractor != nullptr) { m_BoundingShapeInteractor->SetDataNode(nullptr); m_BoundingShapeInteractor->EnableInteraction(false); } } void QmitkImageCropperView::CreateQtPartControl(QWidget *parent) { // create GUI widgets from the Qt Designer's .ui file m_Controls.setupUi(parent); m_Controls.imageSelectionWidget->SetDataStorage(GetDataStorage()); m_Controls.imageSelectionWidget->SetNodePredicate( mitk::NodePredicateAnd::New(mitk::TNodePredicateDataType::New(), mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("helper object")))); m_Controls.imageSelectionWidget->SetSelectionIsOptional(true); m_Controls.imageSelectionWidget->SetAutoSelectNewNodes(true); m_Controls.imageSelectionWidget->SetEmptyInfo(QString("Please select an image node")); m_Controls.imageSelectionWidget->SetPopUpTitel(QString("Select image node")); connect(m_Controls.imageSelectionWidget, &QmitkSingleNodeSelectionWidget::CurrentSelectionChanged, this, &QmitkImageCropperView::OnImageSelectionChanged); m_Controls.boundingBoxSelectionWidget->SetDataStorage(GetDataStorage()); m_Controls.boundingBoxSelectionWidget->SetNodePredicate(mitk::NodePredicateAnd::New( mitk::TNodePredicateDataType::New(), mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("helper object")))); m_Controls.boundingBoxSelectionWidget->SetSelectionIsOptional(true); m_Controls.boundingBoxSelectionWidget->SetAutoSelectNewNodes(true); m_Controls.boundingBoxSelectionWidget->SetEmptyInfo(QString("Please select a bounding box")); m_Controls.boundingBoxSelectionWidget->SetPopUpTitel(QString("Select bounding box node")); connect(m_Controls.boundingBoxSelectionWidget, &QmitkSingleNodeSelectionWidget::CurrentSelectionChanged, this, &QmitkImageCropperView::OnBoundingBoxSelectionChanged); connect(m_Controls.buttonCreateNewBoundingBox, SIGNAL(clicked()), this, SLOT(OnCreateNewBoundingBox())); connect(m_Controls.buttonCropping, SIGNAL(clicked()), this, SLOT(OnCropping())); connect(m_Controls.buttonMasking, SIGNAL(clicked()), this, SLOT(OnMasking())); auto lambda = [this]() { m_Controls.groupImageSettings->setVisible(!m_Controls.groupImageSettings->isVisible()); }; connect(m_Controls.buttonAdvancedSettings, &ctkExpandButton::clicked, this, lambda); connect(m_Controls.spinBoxOutsidePixelValue, SIGNAL(valueChanged(int)), this, SLOT(OnSliderValueChanged(int))); SetDefaultGUI(); m_ParentWidget = parent; this->OnImageSelectionChanged(m_Controls.imageSelectionWidget->GetSelectedNodes()); this->OnBoundingBoxSelectionChanged(m_Controls.boundingBoxSelectionWidget->GetSelectedNodes()); } void QmitkImageCropperView::OnImageSelectionChanged(QList) { bool rotationEnabled = false; m_Controls.labelWarningRotation->setVisible(false); auto imageNode = m_Controls.imageSelectionWidget->GetSelectedNode(); if (imageNode.IsNull()) { SetDefaultGUI(); return; } auto image = dynamic_cast(imageNode->GetData()); if (nullptr != image) { if (image->GetDimension() < 3) { QMessageBox::warning(nullptr, tr("Invalid image selected"), tr("ImageCropper only works with 3 or more dimensions."), QMessageBox::Ok, QMessageBox::NoButton, QMessageBox::NoButton); SetDefaultGUI(); return; } m_ParentWidget->setEnabled(true); m_Controls.buttonCreateNewBoundingBox->setEnabled(true); vtkSmartPointer imageMat = image->GetGeometry()->GetVtkMatrix(); // check whether the image geometry is rotated; if so, no pixel aligned cropping or masking can be performed if ((imageMat->GetElement(1, 0) == 0.0) && (imageMat->GetElement(0, 1) == 0.0) && (imageMat->GetElement(1, 2) == 0.0) && (imageMat->GetElement(2, 1) == 0.0) && (imageMat->GetElement(2, 0) == 0.0) && (imageMat->GetElement(0, 2) == 0.0)) { rotationEnabled = false; m_Controls.labelWarningRotation->setVisible(false); } else { rotationEnabled = true; m_Controls.labelWarningRotation->setStyleSheet(" QLabel { color: rgb(255, 0, 0) }"); m_Controls.labelWarningRotation->setVisible(true); } this->CreateBoundingShapeInteractor(rotationEnabled); if (itk::IOPixelEnum::SCALAR == image->GetPixelType().GetPixelType()) { // Might be changed with the upcoming new image statistics plugin //(recomputation might be very expensive for large images ;) ) auto statistics = image->GetStatistics(); auto minPixelValue = statistics->GetScalarValueMin(); auto maxPixelValue = statistics->GetScalarValueMax(); if (minPixelValue < std::numeric_limits::min()) { minPixelValue = std::numeric_limits::min(); } if (maxPixelValue > std::numeric_limits::max()) { maxPixelValue = std::numeric_limits::max(); } m_Controls.spinBoxOutsidePixelValue->setEnabled(true); m_Controls.spinBoxOutsidePixelValue->setMaximum(static_cast(maxPixelValue)); m_Controls.spinBoxOutsidePixelValue->setMinimum(static_cast(minPixelValue)); m_Controls.spinBoxOutsidePixelValue->setValue(static_cast(minPixelValue)); } else { m_Controls.spinBoxOutsidePixelValue->setEnabled(false); } unsigned int dim = image->GetDimension(); if (dim < 2 || dim > 4) { m_ParentWidget->setEnabled(false); } if (m_Controls.boundingBoxSelectionWidget->GetSelectedNode().IsNotNull()) { m_Controls.buttonCropping->setEnabled(true); m_Controls.buttonMasking->setEnabled(true); m_Controls.buttonAdvancedSettings->setEnabled(true); m_Controls.groupImageSettings->setEnabled(true); } } } void QmitkImageCropperView::OnBoundingBoxSelectionChanged(QList) { auto boundingBoxNode = m_Controls.boundingBoxSelectionWidget->GetSelectedNode(); if (boundingBoxNode.IsNull()) { SetDefaultGUI(); m_BoundingShapeInteractor->EnableInteraction(false); m_BoundingShapeInteractor->SetDataNode(nullptr); if (m_Controls.imageSelectionWidget->GetSelectedNode().IsNotNull()) { m_Controls.buttonCreateNewBoundingBox->setEnabled(true); } return; } auto boundingBox = dynamic_cast(boundingBoxNode->GetData()); if (nullptr != boundingBox) { // node newly selected boundingBoxNode->SetVisibility(true); m_BoundingShapeInteractor->EnableInteraction(true); m_BoundingShapeInteractor->SetDataNode(boundingBoxNode); mitk::RenderingManager::GetInstance()->InitializeViews(); if (m_Controls.imageSelectionWidget->GetSelectedNode().IsNotNull()) { m_Controls.buttonCropping->setEnabled(true); m_Controls.buttonMasking->setEnabled(true); m_Controls.buttonAdvancedSettings->setEnabled(true); m_Controls.groupImageSettings->setEnabled(true); } } } void QmitkImageCropperView::OnCreateNewBoundingBox() { auto imageNode = m_Controls.imageSelectionWidget->GetSelectedNode(); if (imageNode.IsNull()) { return; } if (nullptr == imageNode->GetData()) { return; } QString name = QString::fromStdString(imageNode->GetName() + " Bounding Shape"); auto boundingShape = this->GetDataStorage()->GetNode(mitk::NodePredicateFunction::New([&name](const mitk::DataNode *node) { return 0 == node->GetName().compare(name.toStdString()); })); if (nullptr != boundingShape) { name = this->AdaptBoundingObjectName(name); } // get current timestep to support 3d+t images auto renderWindowPart = this->GetRenderWindowPart(mitk::WorkbenchUtil::IRenderWindowPartStrategy::OPEN); - const auto timePoint = renderWindowPart->GetSelectedTimePoint(); + const mitk::TimePointType timePoint = renderWindowPart->GetSelectedTimePoint(); const auto imageGeometry = imageNode->GetData()->GetTimeGeometry()->GetGeometryForTimePoint(timePoint); auto boundingBox = mitk::GeometryData::New(); boundingBox->SetGeometry(static_cast(this->InitializeWithImageGeometry(imageGeometry))); auto boundingBoxNode = mitk::DataNode::New(); boundingBoxNode->SetData(boundingBox); boundingBoxNode->SetProperty("name", mitk::StringProperty::New(name.toStdString())); boundingBoxNode->SetProperty("color", mitk::ColorProperty::New(1.0, 1.0, 1.0)); boundingBoxNode->SetProperty("opacity", mitk::FloatProperty::New(0.6)); boundingBoxNode->SetProperty("layer", mitk::IntProperty::New(99)); boundingBoxNode->AddProperty("handle size factor", mitk::DoubleProperty::New(1.0 / 40.0)); boundingBoxNode->SetBoolProperty("pickable", true); if (!this->GetDataStorage()->Exists(boundingBoxNode)) { GetDataStorage()->Add(boundingBoxNode, imageNode); } m_Controls.boundingBoxSelectionWidget->SetCurrentSelectedNode(boundingBoxNode); } void QmitkImageCropperView::OnCropping() { this->ProcessImage(false); } void QmitkImageCropperView::OnMasking() { this->ProcessImage(true); } void QmitkImageCropperView::OnSliderValueChanged(int slidervalue) { m_CropOutsideValue = slidervalue; } void QmitkImageCropperView::CreateBoundingShapeInteractor(bool rotationEnabled) { if (m_BoundingShapeInteractor.IsNull()) { m_BoundingShapeInteractor = mitk::BoundingShapeInteractor::New(); m_BoundingShapeInteractor->LoadStateMachine("BoundingShapeInteraction.xml", us::ModuleRegistry::GetModule("MitkBoundingShape")); m_BoundingShapeInteractor->SetEventConfig("BoundingShapeMouseConfig.xml", us::ModuleRegistry::GetModule("MitkBoundingShape")); } m_BoundingShapeInteractor->SetRotationEnabled(rotationEnabled); } mitk::Geometry3D::Pointer QmitkImageCropperView::InitializeWithImageGeometry(const mitk::BaseGeometry* geometry) const { // convert a BaseGeometry into a Geometry3D (otherwise IO is not working properly) if (geometry == nullptr) mitkThrow() << "Geometry is not valid."; auto boundingGeometry = mitk::Geometry3D::New(); boundingGeometry->SetBounds(geometry->GetBounds()); boundingGeometry->SetImageGeometry(geometry->GetImageGeometry()); boundingGeometry->SetOrigin(geometry->GetOrigin()); boundingGeometry->SetSpacing(geometry->GetSpacing()); boundingGeometry->SetIndexToWorldTransform(geometry->GetIndexToWorldTransform()->Clone()); boundingGeometry->Modified(); return boundingGeometry; } void QmitkImageCropperView::ProcessImage(bool mask) { auto renderWindowPart = this->GetRenderWindowPart(mitk::WorkbenchUtil::IRenderWindowPartStrategy::OPEN); const auto timePoint = renderWindowPart->GetSelectedTimePoint(); auto imageNode = m_Controls.imageSelectionWidget->GetSelectedNode(); if (imageNode.IsNull()) { QMessageBox::information(nullptr, "Warning", "Please load and select an image before starting image processing."); return; } auto boundingBoxNode = m_Controls.boundingBoxSelectionWidget->GetSelectedNode(); if (boundingBoxNode.IsNull()) { QMessageBox::information(nullptr, "Warning", "Please load and select a cropping object before starting image processing."); return; } if (!imageNode->GetData()->GetTimeGeometry()->IsValidTimePoint(timePoint)) { QMessageBox::information(nullptr, "Warning", "Please select a time point that is within the time bounds of the selected image."); return; } const auto timeStep = imageNode->GetData()->GetTimeGeometry()->TimePointToTimeStep(timePoint); auto image = dynamic_cast(imageNode->GetData()); auto boundingBox = dynamic_cast(boundingBoxNode->GetData()); if (nullptr != image && nullptr != boundingBox) { // Check if initial node name is already in box name std::string imagePrefix = ""; if (boundingBoxNode->GetName().find(imageNode->GetName()) != 0) { imagePrefix = imageNode->GetName() + "_"; } QString imageName; if (mask) { imageName = QString::fromStdString(imagePrefix + boundingBoxNode->GetName() + "_masked"); } else { imageName = QString::fromStdString(imagePrefix + boundingBoxNode->GetName() + "_cropped"); } if (m_Controls.checkBoxCropTimeStepOnly->isChecked()) { imageName = imageName + "_T" + QString::number(timeStep); } // image and bounding shape ok, set as input auto croppedImageNode = mitk::DataNode::New(); auto cutter = mitk::BoundingShapeCropper::New(); cutter->SetGeometry(boundingBox); // adjustable in advanced settings cutter->SetUseWholeInputRegion(mask); //either mask (mask=true) or crop (mask=false) cutter->SetOutsideValue(m_CropOutsideValue); cutter->SetUseCropTimeStepOnly(m_Controls.checkBoxCropTimeStepOnly->isChecked()); cutter->SetCurrentTimeStep(timeStep); // TODO: Add support for MultiLayer (right now only Mulitlabel support) auto labelsetImageInput = dynamic_cast(image); if (nullptr != labelsetImageInput) { cutter->SetInput(labelsetImageInput); // do the actual cutting try { cutter->Update(); } catch (const itk::ExceptionObject& e) { std::string message = std::string("The Cropping filter could not process because of: \n ") + e.GetDescription(); QMessageBox::warning(nullptr, tr("Cropping not possible!"), tr(message.c_str()), QMessageBox::Ok, QMessageBox::NoButton, QMessageBox::NoButton); return; } auto labelSetImage = mitk::LabelSetImage::New(); labelSetImage->InitializeByLabeledImage(cutter->GetOutput()); for (unsigned int i = 0; i < labelsetImageInput->GetNumberOfLayers(); i++) { labelSetImage->AddLabelSetToLayer(i, labelsetImageInput->GetLabelSet(i)); } croppedImageNode->SetData(labelSetImage); croppedImageNode->SetProperty("name", mitk::StringProperty::New(imageName.toStdString())); //add cropping result to the current data storage as child node to the image node if (!m_Controls.checkOverwriteImage->isChecked()) { if (!this->GetDataStorage()->Exists(croppedImageNode)) { this->GetDataStorage()->Add(croppedImageNode, imageNode); } } else // original image will be overwritten by the result image and the bounding box of the result is adjusted { imageNode->SetData(labelSetImage); imageNode->Modified(); // Adjust coordinate system by doing a reinit on auto tempDataStorage = mitk::DataStorage::SetOfObjects::New(); tempDataStorage->InsertElement(0, imageNode); // initialize the views to the bounding geometry auto bounds = this->GetDataStorage()->ComputeBoundingGeometry3D(tempDataStorage); mitk::RenderingManager::GetInstance()->InitializeViews(bounds); } } else { cutter->SetInput(image); // do the actual cutting try { cutter->Update(); } catch (const itk::ExceptionObject& e) { std::string message = std::string("The Cropping filter could not process because of: \n ") + e.GetDescription(); QMessageBox::warning(nullptr, tr("Cropping not possible!"), tr(message.c_str()), QMessageBox::Ok, QMessageBox::NoButton, QMessageBox::NoButton); return; } //add cropping result to the current data storage as child node to the image node if (!m_Controls.checkOverwriteImage->isChecked()) { croppedImageNode->SetData(cutter->GetOutput()); croppedImageNode->SetProperty("name", mitk::StringProperty::New(imageName.toStdString())); croppedImageNode->SetProperty("color", mitk::ColorProperty::New(1.0, 1.0, 1.0)); mitk::LevelWindow levelWindow; imageNode->GetLevelWindow(levelWindow); croppedImageNode->SetLevelWindow(levelWindow); if (!this->GetDataStorage()->Exists(croppedImageNode)) { this->GetDataStorage()->Add(croppedImageNode, imageNode); imageNode->SetVisibility(mask); // Give the user a visual clue that something happened when image was cropped } } else // original image will be overwritten by the result image and the bounding box of the result is adjusted { mitk::LevelWindow levelWindow; imageNode->GetLevelWindow(levelWindow); imageNode->SetData(cutter->GetOutput()); imageNode->SetLevelWindow(levelWindow); // Adjust coordinate system by doing a reinit on auto tempDataStorage = mitk::DataStorage::SetOfObjects::New(); tempDataStorage->InsertElement(0, imageNode); // initialize the views to the bounding geometry auto bounds = this->GetDataStorage()->ComputeBoundingGeometry3D(tempDataStorage); mitk::RenderingManager::GetInstance()->InitializeViews(bounds); } } } else { QMessageBox::information(nullptr, "Warning", "Please load and select an image before starting image processing."); } } void QmitkImageCropperView::SetDefaultGUI() { m_Controls.buttonCreateNewBoundingBox->setEnabled(false); m_Controls.buttonCropping->setEnabled(false); m_Controls.buttonMasking->setEnabled(false); m_Controls.buttonAdvancedSettings->setEnabled(false); m_Controls.groupImageSettings->setEnabled(false); m_Controls.groupImageSettings->setVisible(false); m_Controls.checkOverwriteImage->setChecked(false); m_Controls.checkBoxCropTimeStepOnly->setChecked(false); } QString QmitkImageCropperView::AdaptBoundingObjectName(const QString& name) const { unsigned int counter = 2; QString newName = QString("%1 %2").arg(name).arg(counter); while (nullptr != this->GetDataStorage()->GetNode(mitk::NodePredicateFunction::New([&newName](const mitk::DataNode *node) { return 0 == node->GetName().compare(newName.toStdString()); }))) { newName = QString("%1 %2").arg(name).arg(++counter); } return newName; } diff --git a/Plugins/org.mitk.gui.qt.imagenavigator/src/internal/QmitkImageNavigatorView.cpp b/Plugins/org.mitk.gui.qt.imagenavigator/src/internal/QmitkImageNavigatorView.cpp index e3d982e82d..d491d7b227 100644 --- a/Plugins/org.mitk.gui.qt.imagenavigator/src/internal/QmitkImageNavigatorView.cpp +++ b/Plugins/org.mitk.gui.qt.imagenavigator/src/internal/QmitkImageNavigatorView.cpp @@ -1,457 +1,455 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkImageNavigatorView.h" #include #include #include #include +#include #include #include const std::string QmitkImageNavigatorView::VIEW_ID = "org.mitk.views.imagenavigator"; QmitkImageNavigatorView::QmitkImageNavigatorView() : m_AxialStepperAdapter(nullptr) , m_SagittalStepperAdapter(nullptr) , m_CoronalStepperAdapter(nullptr) , m_TimeStepperAdapter(nullptr) , m_Parent(nullptr) , m_IRenderWindowPart(nullptr) { } QmitkImageNavigatorView::~QmitkImageNavigatorView() { } void QmitkImageNavigatorView::CreateQtPartControl(QWidget *parent) { // create GUI widgets m_Parent = parent; m_Controls.setupUi(parent); connect(m_Controls.m_XWorldCoordinateSpinBox, SIGNAL(valueChanged(double)), this, SLOT(OnMillimetreCoordinateValueChanged())); connect(m_Controls.m_YWorldCoordinateSpinBox, SIGNAL(valueChanged(double)), this, SLOT(OnMillimetreCoordinateValueChanged())); connect(m_Controls.m_ZWorldCoordinateSpinBox, SIGNAL(valueChanged(double)), this, SLOT(OnMillimetreCoordinateValueChanged())); m_Parent->setEnabled(false); mitk::IRenderWindowPart* renderPart = this->GetRenderWindowPart(); this->RenderWindowPartActivated(renderPart); + + auto* timeController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + + if (m_TimeStepperAdapter) + { + m_TimeStepperAdapter->deleteLater(); + } + + m_TimeStepperAdapter = new QmitkStepperAdapter(m_Controls.m_TimeSliceNavigationWidget, + timeController->GetStepper()); + m_Controls.m_TimeSliceNavigationWidget->setEnabled(true); + m_Controls.m_TimeLabel->setEnabled(true); + connect(m_TimeStepperAdapter, SIGNAL(Refetch()), this, SLOT(OnRefetch())); } void QmitkImageNavigatorView::SetFocus () { m_Controls.m_XWorldCoordinateSpinBox->setFocus(); } void QmitkImageNavigatorView::RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart) { if (this->m_IRenderWindowPart != renderWindowPart) { this->m_IRenderWindowPart = renderWindowPart; this->m_Parent->setEnabled(true); QmitkRenderWindow* renderWindow = renderWindowPart->GetQmitkRenderWindow("axial"); if (renderWindow) { if (m_AxialStepperAdapter) m_AxialStepperAdapter->deleteLater(); m_AxialStepperAdapter = new QmitkStepperAdapter(m_Controls.m_AxialSliceNavigationWidget, - renderWindow->GetSliceNavigationController()->GetSlice()); + renderWindow->GetSliceNavigationController()->GetStepper()); m_Controls.m_AxialSliceNavigationWidget->setEnabled(true); m_Controls.m_AxialLabel->setEnabled(true); m_Controls.m_ZWorldCoordinateSpinBox->setEnabled(true); connect(m_AxialStepperAdapter, SIGNAL(Refetch()), this, SLOT(OnRefetch())); } else { m_Controls.m_AxialSliceNavigationWidget->setEnabled(false); m_Controls.m_AxialLabel->setEnabled(false); m_Controls.m_ZWorldCoordinateSpinBox->setEnabled(false); } renderWindow = renderWindowPart->GetQmitkRenderWindow("sagittal"); if (renderWindow) { if (m_SagittalStepperAdapter) m_SagittalStepperAdapter->deleteLater(); m_SagittalStepperAdapter = new QmitkStepperAdapter(m_Controls.m_SagittalSliceNavigationWidget, - renderWindow->GetSliceNavigationController()->GetSlice()); + renderWindow->GetSliceNavigationController()->GetStepper()); m_Controls.m_SagittalSliceNavigationWidget->setEnabled(true); m_Controls.m_SagittalLabel->setEnabled(true); m_Controls.m_YWorldCoordinateSpinBox->setEnabled(true); connect(m_SagittalStepperAdapter, SIGNAL(Refetch()), this, SLOT(OnRefetch())); } else { m_Controls.m_SagittalSliceNavigationWidget->setEnabled(false); m_Controls.m_SagittalLabel->setEnabled(false); m_Controls.m_YWorldCoordinateSpinBox->setEnabled(false); } renderWindow = renderWindowPart->GetQmitkRenderWindow("coronal"); if (renderWindow) { if (m_CoronalStepperAdapter) m_CoronalStepperAdapter->deleteLater(); m_CoronalStepperAdapter = new QmitkStepperAdapter(m_Controls.m_CoronalSliceNavigationWidget, - renderWindow->GetSliceNavigationController()->GetSlice()); + renderWindow->GetSliceNavigationController()->GetStepper()); m_Controls.m_CoronalSliceNavigationWidget->setEnabled(true); m_Controls.m_CoronalLabel->setEnabled(true); m_Controls.m_XWorldCoordinateSpinBox->setEnabled(true); connect(m_CoronalStepperAdapter, SIGNAL(Refetch()), this, SLOT(OnRefetch())); } else { m_Controls.m_CoronalSliceNavigationWidget->setEnabled(false); m_Controls.m_CoronalLabel->setEnabled(false); m_Controls.m_XWorldCoordinateSpinBox->setEnabled(false); } - mitk::SliceNavigationController* timeController = renderWindowPart->GetTimeNavigationController(); - if (timeController) - { - if (m_TimeStepperAdapter) - m_TimeStepperAdapter->deleteLater(); - m_TimeStepperAdapter = new QmitkStepperAdapter(m_Controls.m_TimeSliceNavigationWidget, - timeController->GetTime()); - m_Controls.m_TimeSliceNavigationWidget->setEnabled(true); - m_Controls.m_TimeLabel->setEnabled(true); - } - else - { - m_Controls.m_TimeSliceNavigationWidget->setEnabled(false); - m_Controls.m_TimeLabel->setEnabled(false); - } - this->OnRefetch(); } } void QmitkImageNavigatorView::RenderWindowPartDeactivated(mitk::IRenderWindowPart* /*renderWindowPart*/) { m_IRenderWindowPart = nullptr; m_Parent->setEnabled(false); } int QmitkImageNavigatorView::GetSizeFlags(bool width) { if(!width) { return berry::Constants::MIN | berry::Constants::MAX | berry::Constants::FILL; } else { return 0; } } int QmitkImageNavigatorView::ComputePreferredSize(bool width, int /*availableParallel*/, int /*availablePerpendicular*/, int preferredResult) { if(width==false) { return 200; } else { return preferredResult; } } int QmitkImageNavigatorView::GetClosestAxisIndex(mitk::Vector3D normal) { // cos(theta) = normal . axis // cos(theta) = (a, b, c) . (d, e, f) // cos(theta) = (a, b, c) . (1, 0, 0) = a // cos(theta) = (a, b, c) . (0, 1, 0) = b // cos(theta) = (a, b, c) . (0, 0, 1) = c double absCosThetaWithAxis[3]; for (int i = 0; i < 3; i++) { absCosThetaWithAxis[i] = fabs(normal[i]); } int largestIndex = 0; double largestValue = absCosThetaWithAxis[0]; for (int i = 1; i < 3; i++) { if (absCosThetaWithAxis[i] > largestValue) { largestValue = absCosThetaWithAxis[i]; largestIndex = i; } } return largestIndex; } void QmitkImageNavigatorView::SetBorderColors() { if (m_IRenderWindowPart) { QString decoColor; QmitkRenderWindow* renderWindow = m_IRenderWindowPart->GetQmitkRenderWindow("axial"); if (renderWindow) { decoColor = GetDecorationColorOfGeometry(renderWindow); mitk::PlaneGeometry::ConstPointer geometry = renderWindow->GetSliceNavigationController()->GetCurrentPlaneGeometry(); if (geometry.IsNotNull()) { mitk::Vector3D normal = geometry->GetNormal(); int axis = this->GetClosestAxisIndex(normal); this->SetBorderColor(axis, decoColor); } } renderWindow = m_IRenderWindowPart->GetQmitkRenderWindow("sagittal"); if (renderWindow) { decoColor = GetDecorationColorOfGeometry(renderWindow); mitk::PlaneGeometry::ConstPointer geometry = renderWindow->GetSliceNavigationController()->GetCurrentPlaneGeometry(); if (geometry.IsNotNull()) { mitk::Vector3D normal = geometry->GetNormal(); int axis = this->GetClosestAxisIndex(normal); this->SetBorderColor(axis, decoColor); } } renderWindow = m_IRenderWindowPart->GetQmitkRenderWindow("coronal"); if (renderWindow) { decoColor = GetDecorationColorOfGeometry(renderWindow); mitk::PlaneGeometry::ConstPointer geometry = renderWindow->GetSliceNavigationController()->GetCurrentPlaneGeometry(); if (geometry.IsNotNull()) { mitk::Vector3D normal = geometry->GetNormal(); int axis = this->GetClosestAxisIndex(normal); this->SetBorderColor(axis, decoColor); } } } } QString QmitkImageNavigatorView::GetDecorationColorOfGeometry(QmitkRenderWindow* renderWindow) { QColor color; float rgb[3] = {1.0f, 1.0f, 1.0f}; float rgbMax = 255.0f; mitk::BaseRenderer::GetInstance(renderWindow->GetVtkRenderWindow())->GetCurrentWorldPlaneGeometryNode()->GetColor(rgb); color.setRed(static_cast(rgb[0]*rgbMax + 0.5)); color.setGreen(static_cast(rgb[1]*rgbMax + 0.5)); color.setBlue(static_cast(rgb[2]*rgbMax + 0.5)); QString colorAsString = QString(color.name()); return colorAsString; } void QmitkImageNavigatorView::SetBorderColor(int axis, QString colorAsStyleSheetString) { if (axis == 0) { this->SetBorderColor(m_Controls.m_XWorldCoordinateSpinBox, colorAsStyleSheetString); } else if (axis == 1) { this->SetBorderColor(m_Controls.m_YWorldCoordinateSpinBox, colorAsStyleSheetString); } else if (axis == 2) { this->SetBorderColor(m_Controls.m_ZWorldCoordinateSpinBox, colorAsStyleSheetString); } } void QmitkImageNavigatorView::SetBorderColor(QDoubleSpinBox *spinBox, QString colorAsStyleSheetString) { assert(spinBox); spinBox->setStyleSheet(QString("border: 2px solid ") + colorAsStyleSheetString + ";"); } void QmitkImageNavigatorView::OnMillimetreCoordinateValueChanged() { if (m_IRenderWindowPart) { mitk::TimeGeometry::ConstPointer geometry = m_IRenderWindowPart->GetActiveQmitkRenderWindow()->GetSliceNavigationController()->GetInputWorldTimeGeometry(); if (geometry.IsNotNull()) { mitk::Point3D positionInWorldCoordinates; positionInWorldCoordinates[0] = m_Controls.m_XWorldCoordinateSpinBox->value(); positionInWorldCoordinates[1] = m_Controls.m_YWorldCoordinateSpinBox->value(); positionInWorldCoordinates[2] = m_Controls.m_ZWorldCoordinateSpinBox->value(); m_IRenderWindowPart->SetSelectedPosition(positionInWorldCoordinates); } } } void QmitkImageNavigatorView::OnRefetch() { if (nullptr == m_IRenderWindowPart) { return; } mitk::TimeGeometry::ConstPointer timeGeometry = m_IRenderWindowPart->GetActiveQmitkRenderWindow()->GetSliceNavigationController()->GetInputWorldTimeGeometry(); if (timeGeometry.IsNull()) { return; } - SetVisibilityOfTimeSlider(timeGeometry->CountTimeSteps()); - mitk::TimeStepType timeStep = m_IRenderWindowPart->GetActiveQmitkRenderWindow()->GetSliceNavigationController()->GetTime()->GetPos(); + const auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + this->SetVisibilityOfTimeSlider(timeNavigationController->GetStepper()->GetSteps()); + const mitk::TimeStepType timeStep = timeNavigationController->GetSelectedTimeStep(); mitk::BaseGeometry::Pointer geometry = timeGeometry->GetGeometryForTimeStep(timeStep); if (geometry.IsNotNull()) { mitk::BoundingBox::BoundsArrayType bounds = geometry->GetBounds(); mitk::Point3D cornerPoint1InIndexCoordinates; cornerPoint1InIndexCoordinates[0] = bounds[0]; cornerPoint1InIndexCoordinates[1] = bounds[2]; cornerPoint1InIndexCoordinates[2] = bounds[4]; mitk::Point3D cornerPoint2InIndexCoordinates; cornerPoint2InIndexCoordinates[0] = bounds[1]; cornerPoint2InIndexCoordinates[1] = bounds[3]; cornerPoint2InIndexCoordinates[2] = bounds[5]; if (!geometry->GetImageGeometry()) { cornerPoint1InIndexCoordinates[0] += 0.5; cornerPoint1InIndexCoordinates[1] += 0.5; cornerPoint1InIndexCoordinates[2] += 0.5; cornerPoint2InIndexCoordinates[0] -= 0.5; cornerPoint2InIndexCoordinates[1] -= 0.5; cornerPoint2InIndexCoordinates[2] -= 0.5; } mitk::Point3D crossPositionInWorldCoordinates = m_IRenderWindowPart->GetSelectedPosition(); mitk::Point3D cornerPoint1InWorldCoordinates; mitk::Point3D cornerPoint2InWorldCoordinates; geometry->IndexToWorld(cornerPoint1InIndexCoordinates, cornerPoint1InWorldCoordinates); geometry->IndexToWorld(cornerPoint2InIndexCoordinates, cornerPoint2InWorldCoordinates); m_Controls.m_XWorldCoordinateSpinBox->blockSignals(true); m_Controls.m_YWorldCoordinateSpinBox->blockSignals(true); m_Controls.m_ZWorldCoordinateSpinBox->blockSignals(true); m_Controls.m_XWorldCoordinateSpinBox->setMinimum( std::min(cornerPoint1InWorldCoordinates[0], cornerPoint2InWorldCoordinates[0])); m_Controls.m_YWorldCoordinateSpinBox->setMinimum( std::min(cornerPoint1InWorldCoordinates[1], cornerPoint2InWorldCoordinates[1])); m_Controls.m_ZWorldCoordinateSpinBox->setMinimum( std::min(cornerPoint1InWorldCoordinates[2], cornerPoint2InWorldCoordinates[2])); m_Controls.m_XWorldCoordinateSpinBox->setMaximum( std::max(cornerPoint1InWorldCoordinates[0], cornerPoint2InWorldCoordinates[0])); m_Controls.m_YWorldCoordinateSpinBox->setMaximum( std::max(cornerPoint1InWorldCoordinates[1], cornerPoint2InWorldCoordinates[1])); m_Controls.m_ZWorldCoordinateSpinBox->setMaximum( std::max(cornerPoint1InWorldCoordinates[2], cornerPoint2InWorldCoordinates[2])); m_Controls.m_XWorldCoordinateSpinBox->setValue(crossPositionInWorldCoordinates[0]); m_Controls.m_YWorldCoordinateSpinBox->setValue(crossPositionInWorldCoordinates[1]); m_Controls.m_ZWorldCoordinateSpinBox->setValue(crossPositionInWorldCoordinates[2]); m_Controls.m_XWorldCoordinateSpinBox->blockSignals(false); m_Controls.m_YWorldCoordinateSpinBox->blockSignals(false); m_Controls.m_ZWorldCoordinateSpinBox->blockSignals(false); /// Calculating 'inverse direction' property. mitk::AffineTransform3D::MatrixType matrix = geometry->GetIndexToWorldTransform()->GetMatrix(); matrix.GetVnlMatrix().normalize_columns(); mitk::AffineTransform3D::MatrixType::InternalMatrixType inverseMatrix = matrix.GetInverse(); for (int worldAxis = 0; worldAxis < 3; ++worldAxis) { QmitkRenderWindow *renderWindow = worldAxis == 0 ? m_IRenderWindowPart->GetQmitkRenderWindow("sagittal") : worldAxis == 1 ? m_IRenderWindowPart->GetQmitkRenderWindow("coronal") : m_IRenderWindowPart->GetQmitkRenderWindow("axial"); if (renderWindow) { const mitk::BaseGeometry* rendererGeometry = renderWindow->GetRenderer()->GetCurrentWorldGeometry(); /// Because of some problems with the current way of event signalling, /// 'Modified' events are sent out from the stepper while the renderer /// does not have a geometry yet. Therefore, we do a nullptr check here. /// See bug T22122. This check can be resolved after T22122 got fixed. if (rendererGeometry) { int dominantAxis = itk::Function::Max3(inverseMatrix[0][worldAxis], inverseMatrix[1][worldAxis], inverseMatrix[2][worldAxis]); bool referenceGeometryAxisInverted = inverseMatrix[dominantAxis][worldAxis] < 0; bool rendererZAxisInverted = rendererGeometry->GetAxisVector(2)[worldAxis] < 0; /// `referenceGeometryAxisInverted` tells if the direction of the corresponding axis /// of the reference geometry is flipped compared to the 'world direction' or not. /// /// `rendererZAxisInverted` tells if direction of the renderer geometry z axis is /// flipped compared to the 'world direction' or not. This is the same as the indexing /// direction in the slice navigation controller and matches the 'top' property when /// initialising the renderer planes. (If 'top' was true then the direction is /// inverted.) /// /// The world direction can be +1 ('up') that means right, anterior or superior, or /// it can be -1 ('down') that means left, posterior or inferior, respectively. /// /// If these two do not match, we have to invert the index between the slice navigation /// controller and the slider navigator widget, so that the user can see and control /// the index according to the reference geometry, rather than the slice navigation /// controller. The index in the slice navigation controller depends on in which way /// the reference geometry has been resliced for the renderer, and it does not necessarily /// match neither the world direction, nor the direction of the corresponding axis of /// the reference geometry. Hence, it is a merely internal information that should not /// be exposed to the GUI. /// /// So that one can navigate in the same world direction by dragging the slider /// right, regardless of the direction of the corresponding axis of the reference /// geometry, we invert the direction of the controls if the reference geometry axis /// is inverted but the direction is not ('inversDirection' is false) or the other /// way around. bool inverseDirection = referenceGeometryAxisInverted != rendererZAxisInverted; QmitkSliceNavigationWidget* sliceNavigationWidget = worldAxis == 0 ? m_Controls.m_SagittalSliceNavigationWidget : worldAxis == 1 ? m_Controls.m_CoronalSliceNavigationWidget : m_Controls.m_AxialSliceNavigationWidget; sliceNavigationWidget->SetInverseDirection(inverseDirection); // This should be a preference (see T22254) // bool invertedControls = referenceGeometryAxisInverted != inverseDirection; // navigatorWidget->SetInvertedControls(invertedControls); } } } } this->SetBorderColors(); } - void QmitkImageNavigatorView::SetVisibilityOfTimeSlider(std::size_t timeSteps) { m_Controls.m_TimeSliceNavigationWidget->setVisible(timeSteps > 1); m_Controls.m_TimeLabel->setVisible(timeSteps > 1); } diff --git a/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkOrbitAnimationItem.cpp b/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkOrbitAnimationItem.cpp index d920eaec5d..654f2696b1 100644 --- a/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkOrbitAnimationItem.cpp +++ b/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkOrbitAnimationItem.cpp @@ -1,70 +1,70 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkOrbitAnimationItem.h" #include QmitkOrbitAnimationItem::QmitkOrbitAnimationItem(int orbit, bool reverse, double duration, double delay, bool startWithPrevious) : QmitkAnimationItem("Orbit", duration, delay, startWithPrevious) { this->SetOrbit(orbit); this->SetReverse(reverse); } QmitkOrbitAnimationItem::~QmitkOrbitAnimationItem() { } int QmitkOrbitAnimationItem::GetOrbit() const { return this->data(OrbitRole).toInt(); } void QmitkOrbitAnimationItem::SetOrbit(int angle) { this->setData(angle, OrbitRole); } bool QmitkOrbitAnimationItem::GetReverse() const { return this->data(ReverseRole).toBool(); } void QmitkOrbitAnimationItem::SetReverse(bool reverse) { this->setData(reverse, ReverseRole); } void QmitkOrbitAnimationItem::Animate(double s) { vtkRenderWindow* renderWindow = mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget3"); if (renderWindow == nullptr) return; - mitk::Stepper* stepper = mitk::BaseRenderer::GetInstance(renderWindow)->GetCameraRotationController()->GetSlice(); + mitk::Stepper* stepper = mitk::BaseRenderer::GetInstance(renderWindow)->GetCameraRotationController()->GetStepper(); if (stepper == nullptr) return; int newPos = this->GetReverse() ? 180 - this->GetOrbit() * s : 180 + this->GetOrbit() * s; while (newPos < 0) newPos += 360; while (newPos > 360) newPos -= 360; stepper->SetPos(static_cast(newPos)); } diff --git a/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkSliceAnimationItem.cpp b/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkSliceAnimationItem.cpp index c7135fcea9..23fd4aabb9 100644 --- a/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkSliceAnimationItem.cpp +++ b/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkSliceAnimationItem.cpp @@ -1,87 +1,87 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkSliceAnimationItem.h" #include QmitkSliceAnimationItem::QmitkSliceAnimationItem(int renderWindow, int from, int to, bool reverse, double duration, double delay, bool startWithPrevious) : QmitkAnimationItem("Slice", duration, delay, startWithPrevious) { this->SetRenderWindow(renderWindow); this->SetFrom(from); this->SetTo(to); this->SetReverse(reverse); } QmitkSliceAnimationItem::~QmitkSliceAnimationItem() { } int QmitkSliceAnimationItem::GetRenderWindow() const { return this->data(RenderWindowRole).toInt(); } void QmitkSliceAnimationItem::SetRenderWindow(int renderWindow) { this->setData(renderWindow, RenderWindowRole); } int QmitkSliceAnimationItem::GetFrom() const { return this->data(FromRole).toInt(); } void QmitkSliceAnimationItem::SetFrom(int from) { this->setData(from, FromRole); } int QmitkSliceAnimationItem::GetTo() const { return this->data(ToRole).toInt(); } void QmitkSliceAnimationItem::SetTo(int to) { this->setData(to, ToRole); } bool QmitkSliceAnimationItem::GetReverse() const { return this->data(ReverseRole).toBool(); } void QmitkSliceAnimationItem::SetReverse(bool reverse) { this->setData(reverse, ReverseRole); } void QmitkSliceAnimationItem::Animate(double s) { const QString renderWindowName = QString("stdmulti.widget%1").arg(this->GetRenderWindow()); vtkRenderWindow* renderWindow = mitk::BaseRenderer::GetRenderWindowByName(renderWindowName.toStdString()); if (renderWindow == nullptr) return; - mitk::Stepper* stepper = mitk::BaseRenderer::GetInstance(renderWindow)->GetSliceNavigationController()->GetSlice(); + mitk::Stepper* stepper = mitk::BaseRenderer::GetInstance(renderWindow)->GetSliceNavigationController()->GetStepper(); if (stepper == nullptr) return; int newPos = this->GetReverse() ? this->GetTo() - static_cast((this->GetTo() - this->GetFrom()) * s) : this->GetFrom() + static_cast((this->GetTo() - this->GetFrom()) * s); stepper->SetPos(static_cast(newPos)); } diff --git a/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkSliceAnimationWidget.cpp b/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkSliceAnimationWidget.cpp index bca0c6de77..49b5dcfc94 100644 --- a/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkSliceAnimationWidget.cpp +++ b/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkSliceAnimationWidget.cpp @@ -1,127 +1,127 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkSliceAnimationItem.h" #include "QmitkSliceAnimationWidget.h" #include #include namespace { int GetNumberOfSlices(int renderWindow) { const QString renderWindowName = QString("stdmulti.widget%1").arg(renderWindow); vtkRenderWindow* theRenderWindow = mitk::BaseRenderer::GetRenderWindowByName(renderWindowName.toStdString()); if (theRenderWindow != nullptr) { - mitk::Stepper* stepper = mitk::BaseRenderer::GetInstance(theRenderWindow)->GetSliceNavigationController()->GetSlice(); + mitk::Stepper* stepper = mitk::BaseRenderer::GetInstance(theRenderWindow)->GetSliceNavigationController()->GetStepper(); if (stepper != nullptr) return std::max(1, static_cast(stepper->GetSteps())); } return 1; } } QmitkSliceAnimationWidget::QmitkSliceAnimationWidget(QWidget* parent) : QmitkAnimationWidget(parent), m_Ui(new Ui::QmitkSliceAnimationWidget), m_AnimationItem(nullptr) { m_Ui->setupUi(this); connect(m_Ui->windowComboBox, SIGNAL(currentIndexChanged(int)), this, SLOT(OnRenderWindowChanged(int))); connect(m_Ui->sliceRangeWidget, SIGNAL(minimumValueChanged(double)), this, SLOT(OnFromChanged(double))); connect(m_Ui->sliceRangeWidget, SIGNAL(maximumValueChanged(double)), this, SLOT(OnToChanged(double))); connect(m_Ui->reverseCheckBox, SIGNAL(clicked(bool)), this, SLOT(OnReverseChanged(bool))); } QmitkSliceAnimationWidget::~QmitkSliceAnimationWidget() { } void QmitkSliceAnimationWidget::SetAnimationItem(QmitkAnimationItem* sliceAnimationItem) { m_AnimationItem = dynamic_cast(sliceAnimationItem); if (nullptr == m_AnimationItem) return; m_Ui->windowComboBox->setCurrentIndex(m_AnimationItem->GetRenderWindow()); const int maximum = GetNumberOfSlices(m_AnimationItem->GetRenderWindow()) - 1; const int from = std::min(m_AnimationItem->GetFrom(), maximum); int to = std::max(from, std::min(m_AnimationItem->GetTo(), maximum)); if (0 == to) to = maximum; m_AnimationItem->SetFrom(from); m_AnimationItem->SetTo(to); m_Ui->sliceRangeWidget->setMaximum(maximum); m_Ui->sliceRangeWidget->setValues(from, to); m_Ui->reverseCheckBox->setChecked(m_AnimationItem->GetReverse()); } void QmitkSliceAnimationWidget::OnRenderWindowChanged(int renderWindow) { if (nullptr == m_AnimationItem) return; const int lastSlice = static_cast(GetNumberOfSlices(renderWindow) - 1); if (lastSlice < m_AnimationItem->GetFrom()) m_AnimationItem->SetFrom(lastSlice); if (lastSlice < m_AnimationItem->GetTo()) m_AnimationItem->SetTo(lastSlice); m_Ui->sliceRangeWidget->setMaximum(lastSlice); m_Ui->sliceRangeWidget->setValues(m_AnimationItem->GetFrom(), m_AnimationItem->GetTo()); if (m_AnimationItem->GetRenderWindow() != renderWindow) m_AnimationItem->SetRenderWindow(renderWindow); } void QmitkSliceAnimationWidget::OnFromChanged(double from) { if (nullptr == m_AnimationItem) return; int intFrom = static_cast(from); if (m_AnimationItem->GetFrom() != intFrom) m_AnimationItem->SetFrom(intFrom); } void QmitkSliceAnimationWidget::OnToChanged(double to) { if (nullptr == m_AnimationItem) return; int intTo = static_cast(to); if (m_AnimationItem->GetTo() != intTo) m_AnimationItem->SetTo(intTo); } void QmitkSliceAnimationWidget::OnReverseChanged(bool reverse) { if (nullptr == m_AnimationItem) return; if (m_AnimationItem->GetReverse() != reverse) m_AnimationItem->SetReverse(reverse); } diff --git a/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkTimeSliceAnimationItem.cpp b/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkTimeSliceAnimationItem.cpp index c2a4e7d339..eaff2baba6 100644 --- a/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkTimeSliceAnimationItem.cpp +++ b/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkTimeSliceAnimationItem.cpp @@ -1,70 +1,72 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkTimeSliceAnimationItem.h" -#include + +#include +#include QmitkTimeSliceAnimationItem::QmitkTimeSliceAnimationItem(int from, int to, bool reverse, double duration, double delay, bool startWithPrevious) : QmitkAnimationItem("Time", duration, delay, startWithPrevious) { this->SetFrom(from); this->SetTo(to); this->SetReverse(reverse); } QmitkTimeSliceAnimationItem::~QmitkTimeSliceAnimationItem() { } int QmitkTimeSliceAnimationItem::GetFrom() const { return this->data(FromRole).toInt(); } void QmitkTimeSliceAnimationItem::SetFrom(int from) { this->setData(from, FromRole); } int QmitkTimeSliceAnimationItem::GetTo() const { return this->data(ToRole).toInt(); } void QmitkTimeSliceAnimationItem::SetTo(int to) { this->setData(to, ToRole); } bool QmitkTimeSliceAnimationItem::GetReverse() const { return this->data(ReverseRole).toBool(); } void QmitkTimeSliceAnimationItem::SetReverse(bool reverse) { this->setData(reverse, ReverseRole); } void QmitkTimeSliceAnimationItem::Animate(double s) { - mitk::Stepper* stepper = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetTime(); + mitk::Stepper* stepper = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetStepper(); if (stepper == nullptr) return; int newPos = this->GetReverse() ? this->GetTo() - static_cast((this->GetTo() - this->GetFrom()) * s) : this->GetFrom() + static_cast((this->GetTo() - this->GetFrom()) * s); stepper->SetPos(static_cast(newPos)); } diff --git a/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkTimeSliceAnimationWidget.cpp b/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkTimeSliceAnimationWidget.cpp index a5f2e52f7f..2a30581a37 100644 --- a/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkTimeSliceAnimationWidget.cpp +++ b/Plugins/org.mitk.gui.qt.moviemaker/src/internal/QmitkTimeSliceAnimationWidget.cpp @@ -1,99 +1,99 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkTimeSliceAnimationItem.h" #include "QmitkTimeSliceAnimationWidget.h" #include -#include +#include #include #include namespace { int GetNumberOfSlices() { - mitk::Stepper* stepper = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetTime(); + mitk::Stepper* stepper = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetStepper(); if (stepper != nullptr) return std::max(1, static_cast(stepper->GetSteps())); return 1; } } QmitkTimeSliceAnimationWidget::QmitkTimeSliceAnimationWidget(QWidget* parent) : QmitkAnimationWidget(parent), m_Ui(new Ui::QmitkTimeSliceAnimationWidget) { m_Ui->setupUi(this); connect(m_Ui->sliceRangeWidget, SIGNAL(minimumValueChanged(double)), this, SLOT(OnFromChanged(double))); connect(m_Ui->sliceRangeWidget, SIGNAL(maximumValueChanged(double)), this, SLOT(OnToChanged(double))); connect(m_Ui->reverseCheckBox, SIGNAL(clicked(bool)), this, SLOT(OnReverseChanged(bool))); } QmitkTimeSliceAnimationWidget::~QmitkTimeSliceAnimationWidget() { } void QmitkTimeSliceAnimationWidget::SetAnimationItem(QmitkAnimationItem* sliceAnimationItem) { m_AnimationItem = dynamic_cast(sliceAnimationItem); if (nullptr == m_AnimationItem) return; const int maximum = GetNumberOfSlices() - 1; const int from = std::min(m_AnimationItem->GetFrom(), maximum); int to = std::max(from, std::min(m_AnimationItem->GetTo(), maximum)); if (0 == to) to = maximum; m_AnimationItem->SetFrom(from); m_AnimationItem->SetTo(to); m_Ui->sliceRangeWidget->setMaximum(maximum); m_Ui->sliceRangeWidget->setValues(from, to); m_Ui->reverseCheckBox->setChecked(m_AnimationItem->GetReverse()); } void QmitkTimeSliceAnimationWidget::OnFromChanged(double from) { if (nullptr == m_AnimationItem) return; int intFrom = static_cast(from); if (m_AnimationItem->GetFrom() != intFrom) m_AnimationItem->SetFrom(intFrom); } void QmitkTimeSliceAnimationWidget::OnToChanged(double to) { if (nullptr == m_AnimationItem) return; int intTo = static_cast(to); if (m_AnimationItem->GetTo() != intTo) m_AnimationItem->SetTo(intTo); } void QmitkTimeSliceAnimationWidget::OnReverseChanged(bool reverse) { if (nullptr == m_AnimationItem) return; if (m_AnimationItem->GetReverse() != reverse) m_AnimationItem->SetReverse(reverse); } diff --git a/Plugins/org.mitk.gui.qt.preprocessing.resampling/src/internal/QmitkPreprocessingResamplingView.cpp b/Plugins/org.mitk.gui.qt.preprocessing.resampling/src/internal/QmitkPreprocessingResamplingView.cpp index 313a67c79c..8927b738ff 100644 --- a/Plugins/org.mitk.gui.qt.preprocessing.resampling/src/internal/QmitkPreprocessingResamplingView.cpp +++ b/Plugins/org.mitk.gui.qt.preprocessing.resampling/src/internal/QmitkPreprocessingResamplingView.cpp @@ -1,456 +1,453 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkPreprocessingResamplingView.h" // QT includes (GUI) #include #include #include #include #include #include #include // Berry includes (selection service) #include #include // MITK includes (GUI) #include "QmitkDataNodeSelectionProvider.h" #include "mitkDataNodeObject.h" // MITK includes (general) #include "mitkNodePredicateDataType.h" #include "mitkNodePredicateDimension.h" #include "mitkNodePredicateAnd.h" #include "mitkImageTimeSelector.h" #include "mitkVectorImageMapper2D.h" #include "mitkProperties.h" #include "mitkLevelWindowProperty.h" +#include // Includes for image casting between ITK and MITK #include "mitkImageCast.h" #include "mitkITKImageImport.h" // ITK includes (general) #include #include // Resampling #include #include #include #include #include #include #include // STD #include // Convenient Definitions typedef itk::Image ImageType; typedef itk::Image SegmentationImageType; typedef itk::Image DoubleImageType; typedef itk::Image, 3> VectorImageType; typedef itk::ResampleImageFilter< ImageType, ImageType > ResampleImageFilterType; typedef itk::ResampleImageFilter< ImageType, ImageType > ResampleImageFilterType2; typedef itk::CastImageFilter< ImageType, DoubleImageType > ImagePTypeToFloatPTypeCasterType; typedef itk::LinearInterpolateImageFunction< ImageType, double > LinearInterpolatorType; typedef itk::NearestNeighborInterpolateImageFunction< ImageType, double > NearestInterpolatorType; typedef itk::BSplineInterpolateImageFunction BSplineInterpolatorType; QmitkPreprocessingResampling::QmitkPreprocessingResampling() : QmitkAbstractView(), m_Controls(nullptr), m_SelectedImageNode(nullptr), m_TimeStepperAdapter(nullptr) { } QmitkPreprocessingResampling::~QmitkPreprocessingResampling() { } void QmitkPreprocessingResampling::CreateQtPartControl(QWidget *parent) { if (m_Controls == nullptr) { m_Controls = new Ui::QmitkPreprocessingResamplingViewControls; m_Controls->setupUi(parent); this->CreateConnections(); mitk::NodePredicateDimension::Pointer dimensionPredicate = mitk::NodePredicateDimension::New(3); mitk::NodePredicateDataType::Pointer imagePredicate = mitk::NodePredicateDataType::New("Image"); } m_SelectedImageNode = mitk::DataStorageSelection::New(this->GetDataStorage(), false); // Setup Controls this->m_Controls->cbParam4->clear(); this->m_Controls->cbParam4->insertItem(LINEAR, "Linear"); this->m_Controls->cbParam4->insertItem(NEAREST, "Nearest neighbor"); this->m_Controls->cbParam4->insertItem(SPLINE, "B-Spline"); } void QmitkPreprocessingResampling::CreateConnections() { if ( m_Controls ) { connect((QObject*)(m_Controls->btnDoIt), SIGNAL(clicked()), (QObject*) this, SLOT(StartButtonClicked())); connect((QObject*)(m_Controls->buttonExecuteOnMultipleImages), SIGNAL(clicked()), (QObject*) this, SLOT(StartMultipleImagesButtonClicked())); connect( (QObject*)(m_Controls->cbParam4), SIGNAL( activated(int) ), this, SLOT( SelectInterpolator(int) ) ); } } void QmitkPreprocessingResampling::InternalGetTimeNavigationController() { - auto renwin_part = GetRenderWindowPart(); - if( renwin_part != nullptr ) + auto* timeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); + if(nullptr != timeNavigationController) { - auto tnc = renwin_part->GetTimeNavigationController(); - if( tnc != nullptr ) - { - m_TimeStepperAdapter = new QmitkStepperAdapter(m_Controls->timeSliceNavigationWidget, tnc->GetTime()); - } + m_TimeStepperAdapter = new QmitkStepperAdapter(m_Controls->timeSliceNavigationWidget, timeNavigationController->GetStepper()); } } void QmitkPreprocessingResampling::SetFocus() { } //datamanager selection changed void QmitkPreprocessingResampling::OnSelectionChanged(berry::IWorkbenchPart::Pointer, const QList& nodes) { ResetOneImageOpPanel(); //any nodes there? if (!nodes.empty()) { // reset GUI m_Controls->timeSliceNavigationWidget->setEnabled(false); m_Controls->leImage1->setText(tr("Select an Image in Data Manager")); m_SelectedNodes.clear(); for (mitk::DataNode* _DataNode : nodes) { m_SelectedImageNode->RemoveAllNodes(); *m_SelectedImageNode = _DataNode; mitk::Image::Pointer tempImage = dynamic_cast(m_SelectedImageNode->GetNode()->GetData()); //no image if (tempImage.IsNull() || (tempImage->IsInitialized() == false)) { if (m_SelectedNodes.size() < 1) { m_Controls->leImage1->setText(tr("Not an image.")); } continue; } //2D image if (tempImage->GetDimension() < 3) { if (m_SelectedNodes.size() < 1) { m_Controls->leImage1->setText(tr("2D images are not supported.")); } continue; } if (m_SelectedNodes.size() < 1) { m_Controls->leImage1->setText(QString(m_SelectedImageNode->GetNode()->GetName().c_str())); mitk::Vector3D aSpacing = tempImage->GetGeometry()->GetSpacing(); std::string text("x-spacing (" + std::to_string(aSpacing[0]) + ")"); m_Controls->tlParam1->setText(text.c_str()); text = "y-spacing (" + std::to_string(aSpacing[1]) + ")"; m_Controls->tlParam2->setText(text.c_str()); text = "z-spacing (" + std::to_string(aSpacing[2]) + ")"; m_Controls->tlParam3->setText(text.c_str()); if (tempImage->GetDimension() > 3) { // try to retrieve the TNC (for 4-D Processing ) this->InternalGetTimeNavigationController(); m_Controls->timeSliceNavigationWidget->setEnabled(true); m_Controls->tlTime->setEnabled(true); } } m_SelectedNodes.push_back(_DataNode); } if (m_SelectedNodes.size() > 0) { *m_SelectedImageNode = m_SelectedNodes[0]; } ResetParameterPanel(); } } void QmitkPreprocessingResampling::ResetOneImageOpPanel() { m_Controls->tlTime->setEnabled(false); m_Controls->btnDoIt->setEnabled(false); m_Controls->buttonExecuteOnMultipleImages->setEnabled(false); m_Controls->cbHideOrig->setEnabled(false); m_Controls->leImage1->setText(tr("Select an Image in Data Manager")); m_Controls->tlParam1->setText("x-spacing"); m_Controls->tlParam1->setText("y-spacing"); m_Controls->tlParam1->setText("z-spacing"); } void QmitkPreprocessingResampling::ResetParameterPanel() { m_Controls->btnDoIt->setEnabled(true); m_Controls->buttonExecuteOnMultipleImages->setEnabled(true); m_Controls->cbHideOrig->setEnabled(true); } void QmitkPreprocessingResampling::ResetTwoImageOpPanel() { } void QmitkPreprocessingResampling::StartMultipleImagesButtonClicked() { for (auto currentSelectedNode : m_SelectedNodes) { m_SelectedImageNode->RemoveAllNodes(); *m_SelectedImageNode = currentSelectedNode; StartButtonClicked(); } } void QmitkPreprocessingResampling::StartButtonClicked() { if(!m_SelectedImageNode->GetNode()) return; this->BusyCursorOn(); mitk::Image::Pointer newImage; try { newImage = dynamic_cast(m_SelectedImageNode->GetNode()->GetData()); } catch ( std::exception &e ) { QString exceptionString = tr("An error occured during image loading:\n"); exceptionString.append( e.what() ); QMessageBox::warning( nullptr, "Preprocessing - Resampling: ", exceptionString , QMessageBox::Ok, QMessageBox::NoButton ); this->BusyCursorOff(); return; } // check if input image is valid, casting does not throw exception when casting from 'NULL-Object' if ( (! newImage) || (newImage->IsInitialized() == false) ) { this->BusyCursorOff(); QMessageBox::warning( nullptr, "Preprocessing - Resampling", tr("Input image is broken or not initialized. Returning."), QMessageBox::Ok, QMessageBox::NoButton ); return; } // check if operation is done on 4D a image time step if(newImage->GetDimension() > 3) { mitk::ImageTimeSelector::Pointer timeSelector = mitk::ImageTimeSelector::New(); timeSelector->SetInput(newImage); timeSelector->SetTimeNr(m_Controls->timeSliceNavigationWidget->GetPos()); timeSelector->Update(); newImage = timeSelector->GetOutput(); } // check if image or vector image ImageType::Pointer itkImage = ImageType::New(); VectorImageType::Pointer itkVecImage = VectorImageType::New(); int isVectorImage = newImage->GetPixelType().GetNumberOfComponents(); if(isVectorImage > 1) { CastToItkImage( newImage, itkVecImage ); } else { CastToItkImage( newImage, itkImage ); } std::stringstream nameAddition(""); double dparam1 = m_Controls->dsbParam1->value(); double dparam2 = m_Controls->dsbParam2->value(); double dparam3 = m_Controls->dsbParam3->value(); try{ std::string selectedInterpolator; ResampleImageFilterType::Pointer resampler = ResampleImageFilterType::New(); switch (m_SelectedInterpolation) { case LINEAR: { LinearInterpolatorType::Pointer interpolator = LinearInterpolatorType::New(); resampler->SetInterpolator(interpolator); selectedInterpolator = "Linear"; break; } case NEAREST: { NearestInterpolatorType::Pointer interpolator = NearestInterpolatorType::New(); resampler->SetInterpolator(interpolator); selectedInterpolator = "Nearest"; break; } case SPLINE: { BSplineInterpolatorType::Pointer interpolator = BSplineInterpolatorType::New(); interpolator->SetSplineOrder(3); resampler->SetInterpolator(interpolator); selectedInterpolator = "B-Spline"; break; } default: { LinearInterpolatorType::Pointer interpolator = LinearInterpolatorType::New(); resampler->SetInterpolator(interpolator); selectedInterpolator = "Linear"; break; } } resampler->SetInput( itkImage ); resampler->SetOutputOrigin( itkImage->GetOrigin() ); ImageType::SizeType input_size = itkImage->GetLargestPossibleRegion().GetSize(); ImageType::SpacingType input_spacing = itkImage->GetSpacing(); ImageType::SizeType output_size; ImageType::SpacingType output_spacing; if (dparam1 > 0) { output_size[0] = std::ceil(input_size[0] * (input_spacing[0] / dparam1)); output_spacing[0] = dparam1; } else { output_size[0] = std::ceil(input_size[0] * (-1.0 / dparam1)); output_spacing[0] = -1.0*input_spacing[0] * dparam1; } if (dparam2 > 0) { output_size[1] = std::ceil(input_size[1] * (input_spacing[1] / dparam2)); output_spacing[1] = dparam2; } else { output_size[1] = std::ceil(input_size[1] * (-1.0 / dparam2)); output_spacing[1] = -1.0*input_spacing[1] * dparam2; } if (dparam3 > 0) { output_size[2] = std::ceil(input_size[2] * (input_spacing[2] / dparam3)); output_spacing[2] = dparam3; } else { output_size[2] = std::ceil(input_size[2] * (-1.0 / dparam3)); output_spacing[2] = -1.0*input_spacing[2] * dparam3; } resampler->SetSize( output_size ); resampler->SetOutputSpacing( output_spacing ); resampler->SetOutputDirection( itkImage->GetDirection() ); resampler->UpdateLargestPossibleRegion(); ImageType::Pointer resampledImage = resampler->GetOutput(); newImage = mitk::ImportItkImage( resampledImage )->Clone(); nameAddition << "_Resampled_" << selectedInterpolator; std::cout << "Resampling successful." << std::endl; } catch (...) { this->BusyCursorOff(); QMessageBox::warning(nullptr, "Warning", "Problem when applying filter operation. Check your input..."); return; } newImage->DisconnectPipeline(); // adjust level/window to new image mitk::LevelWindow levelwindow; levelwindow.SetAuto( newImage ); mitk::LevelWindowProperty::Pointer levWinProp = mitk::LevelWindowProperty::New(); levWinProp->SetLevelWindow( levelwindow ); // compose new image name std::string name = m_SelectedImageNode->GetNode()->GetName(); if (name.find(".nrrd") == name.size() -5 ) { name = name.substr(0,name.size() -5); } name.append( nameAddition.str() ); // create final result MITK data storage node mitk::DataNode::Pointer result = mitk::DataNode::New(); result->SetProperty( "levelwindow", levWinProp ); result->SetProperty( "name", mitk::StringProperty::New( name.c_str() ) ); result->SetData( newImage ); // for vector images, a different mapper is needed if(isVectorImage > 1) { mitk::VectorImageMapper2D::Pointer mapper = mitk::VectorImageMapper2D::New(); result->SetMapper(1,mapper); } // add new image to data storage and set as active to ease further processing GetDataStorage()->Add( result, m_SelectedImageNode->GetNode() ); if ( m_Controls->cbHideOrig->isChecked() == true ) m_SelectedImageNode->GetNode()->SetProperty( "visible", mitk::BoolProperty::New(false) ); // show the results mitk::RenderingManager::GetInstance()->RequestUpdateAll(); this->BusyCursorOff(); } void QmitkPreprocessingResampling::SelectInterpolator(int interpolator) { switch (interpolator) { case 0: { m_SelectedInterpolation = LINEAR; break; } case 1: { m_SelectedInterpolation = NEAREST; break; } case 2: { m_SelectedInterpolation = SPLINE; } } } diff --git a/Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationUtilitiesView.cpp b/Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationUtilitiesView.cpp index 330e893f69..4a96a422a7 100644 --- a/Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationUtilitiesView.cpp +++ b/Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationUtilitiesView.cpp @@ -1,86 +1,68 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkSegmentationUtilitiesView.h" #include #include #include #include #include QmitkSegmentationUtilitiesView::QmitkSegmentationUtilitiesView() : m_BooleanOperationsWidget(nullptr), m_ContourModelToImageWidget(nullptr), m_ImageMaskingWidget(nullptr), m_MorphologicalOperationsWidget(nullptr), m_SurfaceToImageWidget(nullptr) { } QmitkSegmentationUtilitiesView::~QmitkSegmentationUtilitiesView() { } void QmitkSegmentationUtilitiesView::CreateQtPartControl(QWidget* parent) { m_Controls.setupUi(parent); - mitk::IRenderWindowPart* renderWindowPart = this->GetRenderWindowPart(); - - mitk::SliceNavigationController* timeNavigationController = renderWindowPart != nullptr - ? renderWindowPart->GetTimeNavigationController() - : nullptr; - auto dataStorage = this->GetDataStorage(); - m_BooleanOperationsWidget = new QmitkBooleanOperationsWidget(dataStorage, timeNavigationController, parent); - m_ContourModelToImageWidget = new QmitkContourModelToImageWidget(dataStorage, timeNavigationController, parent); - m_ImageMaskingWidget = new QmitkImageMaskingWidget(dataStorage, timeNavigationController, parent); - m_MorphologicalOperationsWidget = new QmitkMorphologicalOperationsWidget(dataStorage, timeNavigationController, parent); - m_SurfaceToImageWidget = new QmitkSurfaceToImageWidget(dataStorage, timeNavigationController, parent); + m_BooleanOperationsWidget = new QmitkBooleanOperationsWidget(dataStorage, parent); + m_ContourModelToImageWidget = new QmitkContourModelToImageWidget(dataStorage, parent); + m_ImageMaskingWidget = new QmitkImageMaskingWidget(dataStorage, parent); + m_MorphologicalOperationsWidget = new QmitkMorphologicalOperationsWidget(dataStorage, parent); + m_SurfaceToImageWidget = new QmitkSurfaceToImageWidget(dataStorage, parent); this->AddUtilityWidget(m_BooleanOperationsWidget, QIcon(":/SegmentationUtilities/BooleanOperations_48x48.png"), "Boolean Operations"); this->AddUtilityWidget(m_ContourModelToImageWidget, QIcon(":/SegmentationUtilities/ContourModelSetToImage_48x48.png"), "Contour to Image"); this->AddUtilityWidget(m_ImageMaskingWidget, QIcon(":/SegmentationUtilities/ImageMasking_48x48.png"), "Image Masking"); this->AddUtilityWidget(m_MorphologicalOperationsWidget, QIcon(":/SegmentationUtilities/MorphologicalOperations_48x48.png"), "Morphological Operations"); this->AddUtilityWidget(m_SurfaceToImageWidget, QIcon(":/SegmentationUtilities/SurfaceToImage_48x48.png"), "Surface to Image"); } void QmitkSegmentationUtilitiesView::AddUtilityWidget(QWidget* widget, const QIcon& icon, const QString& text) { m_Controls.toolBox->addItem(widget, icon, text); } void QmitkSegmentationUtilitiesView::SetFocus() { m_Controls.toolBox->setFocus(); } -void QmitkSegmentationUtilitiesView::RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart) +void QmitkSegmentationUtilitiesView::RenderWindowPartActivated(mitk::IRenderWindowPart*) { - mitk::SliceNavigationController* timeNavigationController = renderWindowPart->GetTimeNavigationController(); - - m_BooleanOperationsWidget->SetTimeNavigationController(timeNavigationController); - m_ContourModelToImageWidget->SetTimeNavigationController(timeNavigationController); - m_ImageMaskingWidget->SetTimeNavigationController(timeNavigationController); - m_MorphologicalOperationsWidget->SetTimeNavigationController(timeNavigationController); - m_SurfaceToImageWidget->SetTimeNavigationController(timeNavigationController); } void QmitkSegmentationUtilitiesView::RenderWindowPartDeactivated(mitk::IRenderWindowPart*) { - m_BooleanOperationsWidget->SetTimeNavigationController(nullptr); - m_ContourModelToImageWidget->SetTimeNavigationController(nullptr); - m_ImageMaskingWidget->SetTimeNavigationController(nullptr); - m_MorphologicalOperationsWidget->SetTimeNavigationController(nullptr); - m_SurfaceToImageWidget->SetTimeNavigationController(nullptr); } diff --git a/Plugins/org.mitk.gui.qt.volumevisualization/src/internal/QmitkVolumeVisualizationView.cpp b/Plugins/org.mitk.gui.qt.volumevisualization/src/internal/QmitkVolumeVisualizationView.cpp index 0170559e19..cba95f5cf5 100755 --- a/Plugins/org.mitk.gui.qt.volumevisualization/src/internal/QmitkVolumeVisualizationView.cpp +++ b/Plugins/org.mitk.gui.qt.volumevisualization/src/internal/QmitkVolumeVisualizationView.cpp @@ -1,243 +1,245 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkVolumeVisualizationView.h" #include #include +#include + #include #include #include #include #include #include #include #include #include #include const std::string QmitkVolumeVisualizationView::VIEW_ID = "org.mitk.views.volumevisualization"; enum { DEFAULT_RENDERMODE = 0, RAYCAST_RENDERMODE = 1, GPU_RENDERMODE = 2 }; QmitkVolumeVisualizationView::QmitkVolumeVisualizationView() : QmitkAbstractView() , m_Controls(nullptr) { } void QmitkVolumeVisualizationView::SetFocus() { } void QmitkVolumeVisualizationView::CreateQtPartControl(QWidget* parent) { m_Controls = new Ui::QmitkVolumeVisualizationViewControls; m_Controls->setupUi(parent); m_Controls->volumeSelectionWidget->SetDataStorage(GetDataStorage()); m_Controls->volumeSelectionWidget->SetNodePredicate(mitk::NodePredicateAnd::New( mitk::TNodePredicateDataType::New(), mitk::NodePredicateOr::New(mitk::NodePredicateDimension::New(3), mitk::NodePredicateDimension::New(4)), mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("helper object")))); m_Controls->volumeSelectionWidget->SetSelectionIsOptional(true); m_Controls->volumeSelectionWidget->SetEmptyInfo(QString("Please select a 3D / 4D image volume")); m_Controls->volumeSelectionWidget->SetPopUpTitel(QString("Select image volume")); // Fill the transfer function presets in the generator widget std::vector names; mitk::TransferFunctionInitializer::GetPresetNames(names); for (const auto& name : names) { m_Controls->transferFunctionGeneratorWidget->AddPreset(QString::fromStdString(name)); } // see vtkVolumeMapper::BlendModes m_Controls->blendMode->addItem("Composite", vtkVolumeMapper::COMPOSITE_BLEND); m_Controls->blendMode->addItem("Maximum intensity", vtkVolumeMapper::MAXIMUM_INTENSITY_BLEND); m_Controls->blendMode->addItem("Minimum intensity", vtkVolumeMapper::MINIMUM_INTENSITY_BLEND); m_Controls->blendMode->addItem("Average intensity", vtkVolumeMapper::AVERAGE_INTENSITY_BLEND); m_Controls->blendMode->addItem("Additive", vtkVolumeMapper::ADDITIVE_BLEND); connect(m_Controls->volumeSelectionWidget, &QmitkSingleNodeSelectionWidget::CurrentSelectionChanged, this, &QmitkVolumeVisualizationView::OnCurrentSelectionChanged); connect(m_Controls->enableRenderingCB, SIGNAL(toggled(bool)), this, SLOT(OnEnableRendering(bool))); connect(m_Controls->blendMode, SIGNAL(activated(int)), this, SLOT(OnBlendMode(int))); connect(m_Controls->transferFunctionGeneratorWidget, SIGNAL(SignalUpdateCanvas()), m_Controls->transferFunctionWidget, SLOT(OnUpdateCanvas())); connect(m_Controls->transferFunctionGeneratorWidget, SIGNAL(SignalTransferFunctionModeChanged(int)), SLOT(OnMitkInternalPreset(int))); m_Controls->enableRenderingCB->setEnabled(false); m_Controls->blendMode->setEnabled(false); m_Controls->transferFunctionWidget->setEnabled(false); m_Controls->transferFunctionGeneratorWidget->setEnabled(false); m_Controls->volumeSelectionWidget->SetAutoSelectNewNodes(true); this->m_TimePointChangeListener.RenderWindowPartActivated(this->GetRenderWindowPart()); connect(&m_TimePointChangeListener, &QmitkSliceNavigationListener::SelectedTimePointChanged, this, &QmitkVolumeVisualizationView::OnSelectedTimePointChanged); } void QmitkVolumeVisualizationView::RenderWindowPartActivated(mitk::IRenderWindowPart *renderWindowPart) { this->m_TimePointChangeListener.RenderWindowPartActivated(renderWindowPart); } void QmitkVolumeVisualizationView::RenderWindowPartDeactivated(mitk::IRenderWindowPart *renderWindowPart) { this->m_TimePointChangeListener.RenderWindowPartDeactivated(renderWindowPart); } void QmitkVolumeVisualizationView::OnMitkInternalPreset(int mode) { auto node = m_SelectedNode.Lock(); if (node.IsNull()) { return; } mitk::TransferFunctionProperty::Pointer transferFuncProp; if (node->GetProperty(transferFuncProp, "TransferFunction")) { // first item is only information if (--mode == -1) return; // -- Creat new TransferFunction mitk::TransferFunctionInitializer::Pointer tfInit = mitk::TransferFunctionInitializer::New(transferFuncProp->GetValue()); tfInit->SetTransferFunctionMode(mode); RequestRenderWindowUpdate(); m_Controls->transferFunctionWidget->OnUpdateCanvas(); } } void QmitkVolumeVisualizationView::OnCurrentSelectionChanged(QList nodes) { m_SelectedNode = nullptr; if (nodes.empty() || nodes.front().IsNull()) { UpdateInterface(); return; } auto selectedNode = nodes.front(); auto image = dynamic_cast(selectedNode->GetData()); if (nullptr != image) { m_SelectedNode = selectedNode; } UpdateInterface(); } void QmitkVolumeVisualizationView::OnEnableRendering(bool state) { auto selectedNode = m_SelectedNode.Lock(); if (selectedNode.IsNull()) { return; } selectedNode->SetProperty("volumerendering", mitk::BoolProperty::New(state)); UpdateInterface(); RequestRenderWindowUpdate(); } void QmitkVolumeVisualizationView::OnBlendMode(int index) { auto selectedNode = m_SelectedNode.Lock(); if (selectedNode.IsNull()) return; int mode = m_Controls->blendMode->itemData(index).toInt(); selectedNode->SetProperty("volumerendering.blendmode", mitk::IntProperty::New(mode)); this->RequestRenderWindowUpdate(); } void QmitkVolumeVisualizationView::OnSelectedTimePointChanged(const mitk::TimePointType & /*newTimePoint*/) { this->UpdateInterface(); } void QmitkVolumeVisualizationView::UpdateInterface() { if (m_SelectedNode.IsExpired()) { // turnoff all m_Controls->enableRenderingCB->setChecked(false); m_Controls->enableRenderingCB->setEnabled(false); m_Controls->blendMode->setCurrentIndex(0); m_Controls->blendMode->setEnabled(false); m_Controls->transferFunctionWidget->SetDataNode(nullptr); m_Controls->transferFunctionWidget->setEnabled(false); m_Controls->transferFunctionGeneratorWidget->SetDataNode(nullptr); m_Controls->transferFunctionGeneratorWidget->setEnabled(false); return; } bool enabled = false; auto selectedNode = m_SelectedNode.Lock(); selectedNode->GetBoolProperty("volumerendering", enabled); m_Controls->enableRenderingCB->setEnabled(true); m_Controls->enableRenderingCB->setChecked(enabled); if (!enabled) { // turnoff all except volumerendering checkbox m_Controls->blendMode->setCurrentIndex(0); m_Controls->blendMode->setEnabled(false); m_Controls->transferFunctionWidget->SetDataNode(nullptr); m_Controls->transferFunctionWidget->setEnabled(false); m_Controls->transferFunctionGeneratorWidget->SetDataNode(nullptr); m_Controls->transferFunctionGeneratorWidget->setEnabled(false); return; } // otherwise we can activate em all m_Controls->blendMode->setEnabled(true); // Determine Combo Box mode int blendMode; if (selectedNode->GetIntProperty("volumerendering.blendmode", blendMode)) m_Controls->blendMode->setCurrentIndex(blendMode); - auto time = this->GetRenderWindowPart()->GetTimeNavigationController()->GetSelectedTimeStep(); - m_Controls->transferFunctionWidget->SetDataNode(selectedNode, time); + const auto timeStep = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimeStep(); + m_Controls->transferFunctionWidget->SetDataNode(selectedNode, timeStep); m_Controls->transferFunctionWidget->setEnabled(true); - m_Controls->transferFunctionGeneratorWidget->SetDataNode(selectedNode, time); + m_Controls->transferFunctionGeneratorWidget->SetDataNode(selectedNode, timeStep); m_Controls->transferFunctionGeneratorWidget->setEnabled(true); }