diff --git a/Documentation/Doxygen/Applications.dox b/Documentation/Doxygen/Applications.dox new file mode 100644 index 0000000000..727ff09deb --- /dev/null +++ b/Documentation/Doxygen/Applications.dox @@ -0,0 +1,30 @@ +/** +\page ApplicationsPage Using MITK and Applications + +Available sections: + - \ref ApplicationsPageUsingMITK + - \ref ApplicationsPageApplications + - \ref ApplicationsPageApplicationsList + +\section ApplicationsPageUsingMITK Using MITK + +Many of the applications created with the use of MITK share common basic functionalities. Due to this, there is one manual which explains the basic usage of MITK. For more information on the use of the advanced features of an application please take a look the the \ref ApplicationsPageApplicationsList , whereas if you are interested in a certain view more information can be found in \ref ModuleListPage . + +The basic usage information on MITK can be found in \subpage MITKManualMainPage . + +\section ApplicationsPageApplications What are Applications? + +Applications are executables, which contain a certain configuration of views and perspectives. Usually they are aimed at a selective audience or solving a particular problem. As such they focus on certain capabilities of MITK, while ignoring others. The main reason for this is to supply the users of the application with the power of MITK for solving their tasks, without daunting them with an overwhelming number of menus and options. At the same time, this allows, together with the use of perspectives, the creation of sleek and elegant workflows, which are easily comprehensible. + +A typical example of this would be an application which contains only views related to the analysis of the human brain (particular question) or one which contains only what is necessary for displaying medical data in the classroom (specific audience). + +\section ApplicationsPageApplicationsList List of Applications + +If you are interested in using a specific application, currently developed by the MITK team you might want to take a look first at the \ref MITKManualMainPage . Further information on any application can be found here: + + +*/ \ No newline at end of file diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Crosshair_Modes.png b/Documentation/Doxygen/UserManual/Crosshair_Modes.png similarity index 100% rename from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Crosshair_Modes.png rename to Documentation/Doxygen/UserManual/Crosshair_Modes.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/GUI.png b/Documentation/Doxygen/UserManual/GUI.png similarity index 100% rename from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/GUI.png rename to Documentation/Doxygen/UserManual/GUI.png diff --git a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/GUI_Commented.png b/Documentation/Doxygen/UserManual/GUI_Commented.png similarity index 100% rename from Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/GUI_Commented.png rename to Documentation/Doxygen/UserManual/GUI_Commented.png diff --git a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/QmitkExtapplicationUserManual.dox b/Documentation/Doxygen/UserManual/MITKUserManual.dox similarity index 62% copy from Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/QmitkExtapplicationUserManual.dox copy to Documentation/Doxygen/UserManual/MITKUserManual.dox index 63dccc44fe..8b60bcc1d6 100644 --- a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/QmitkExtapplicationUserManual.dox +++ b/Documentation/Doxygen/UserManual/MITKUserManual.dox @@ -1,120 +1,118 @@ /** -\bundlemainpage{org_extapplication} The Main Application +\page MITKManualMainPage The MITK User Manual -Welcome to the MITK ExtApplication, build with the Medical Imaging Toolkit ( http://mitk.org/ ). +Welcome to the basic MITK user manual. This document tries to give a concise overview of the basic functions of MITK and be an comprehensible guide on using them. Available sections: - - \ref QmitkExtApplicationUserManualOverview - - \ref QmitkExtApplicationUserManualUserInterface - - \ref QmitkExtApplicationUserManualPerspectives + - \ref MITKManualMainPageOverview + - \ref MITKManualMainPageUserInterface + - \ref MITKManualMainPagePerspectives -\section QmitkExtApplicationUserManualOverview About MITK and MITK ExtApplication +\section MITKManualMainPageOverview About MITK MITK is an open-source framework that was originally developed as a common framework for Ph.D. students in the Division of Medical and Biological Informatics (MBI) at the German Cancer Research Center. MITK aims at supporting the development of leading-edge medical imaging software with a high degree of interaction. MITK re-uses virtually anything from VTK and ITK. Thus, it is not at all a competitor to VTK or ITK, but an extension, which tries to ease the combination of both and to add features not supported by VTK or ITK. Research institutes, medical professionals and companies alike can use MITK as a basic framework for their research and even commercial (thorough code research needed) software due to the BSD-like software license. Research institutes will profit from the high level of integration of ITK and VTK enhanced with data management, advanced visualization and interaction functionality in a single framework that is supported by a wide variety of researchers and developers. You will not have to reinvent the wheel over and over and can concentrate on your work. -Medical Professionals will profit from MITK and the MITK ExtApplication by using its basic functionalities for research projects. But nonetheless they will be better off, unless they are programmers themselves, to cooperate with a research institute developing with MITK to get the functionalitiy they need. MITK and the presented MITK ExtApplication are not certified medical products and may be used in a research setting only. They must not be used in patient care. +Medical Professionals will profit from MITK and the MITK applications by using its basic functionalities for research projects. But nonetheless they will be better off, unless they are programmers themselves, to cooperate with a research institute developing with MITK to get the functionalitiy they need. MITK and the MITK applications are not certified medical products and may be used in a research setting only. They must not be used in patient care. -MITK ExtApplication is a demonstration of the capabilites of the MITK framework and has been created by the Division of Medical and Biological Informatics (MBI) at the German Cancer Research Center. +\section MITKManualMainPageUserInterface The User Interface -\section QmitkExtApplicationUserManualUserInterface The User Interface +The layout of the MITK applications is designed to give a clear distinction between the different work areas. The following figure gives an overview of the main sections of the user interface. -The layout of the MITK ExtApplication is designed to give a clear distinction between the different work areas. The following figure gives an overview of the main sections of the user interface. +\image html GUI_Commented.png "The Common MITK Application Graphical User Interface" -\image html GUI_Commented.png "The MITK ExtApplication User Interface" +The datamanager and the \ref MITKManualMainPagePerspectives have their own help sections. This document explains the use of: + - The \ref MITKManualMainPageMultiWidget + - The \ref MITKManualMainPageMenu + - The \ref MITKManualMainPageLevelWindow + - The \ref MITKManualMainPageMemoryUsage + - The \ref MITKManualMainPageViews -The datamanager and the \ref QmitkExtApplicationUserManualPerspectives have their own help sections. This document explains the use of: - - The \ref QmitkExtApplicationUserManualMultiWidget - - The \ref QmitkExtApplicationUserManualMenu - - The \ref QmitkExtApplicationUserManualLevelWindow - - The \ref QmitkExtApplicationUserManualMemoryUsage - - The \ref QmitkExtApplicationUserManualViews - -\section QmitkExtApplicationUserManualMultiWidget Four Window View +\section MITKManualMainPageMultiWidget Four Window View -\subsection QmitkExtApplicationUserManualMultiWidgetOverview Overview +\subsection MITKManualMainPageMultiWidgetOverview Overview -The four window view is the heart of the MITK ExtApplication image viewing. The standard layout is three 2D windows and one 3D window, with the transversal window in the top left quarter, the sagittal window in the top right quarter, the coronal window in the lower left quarter and the 3D window in the lower right quarter. The different planes form a crosshair that can be seen in the 3D window. +The four window view is the heart of the MITK image viewing. The standard layout is three 2D windows and one 3D window, with the transversal window in the top left quarter, the sagittal window in the top right quarter, the coronal window in the lower left quarter and the 3D window in the lower right quarter. The different planes form a crosshair that can be seen in the 3D window. Once you select a point within the picture, informations about it are displayed at the bottom of the screen. -\subsection QmitkExtApplicationUserManualMultiWidgetNavigation Navigation +\subsection MITKManualMainPageMultiWidgetNavigation Navigation Left click in any of the 2D windows centers the crosshair on that point. Pressing the right mouse button and moving the mouse zooms in and out. By scrolling with the mouse wheel you can navigate through the slices of the active window and pressing the mouse wheel while moving the mouse pans the image section. In the 3D window you can rotate the object by pressing the left mouse button and moving the mouse, zoom either with the right mouse button as in 2D or with the mouse wheel, and pan the object by moving the mouse while the mouse wheel is pressed. Placing the cursor within the 3D window and holding the "F" key allows free flight into the 3D view. -\subsection QmitkExtApplicationUserManualMultiWidgetCustomizingViews Customizing +\subsection MITKManualMainPageMultiWidgetCustomizingViews Customizing By moving the cursor to the upper right corner of any window you can activate the window menu. It consists of three buttons. \image html Crosshair_Modes.png "Crosshair" The crosshair button allows you toggle the crosshair, reset the view and change the behaviour of the planes. Activating either of the rotation modes allows you to rotate the planes visible in a 2D window by moving the mouse cursor close to them and click and dragging once it changes to indicate that rotation can be done. The swivel mode is recommended only for advanced users as the planes can be moved freely by clicking and dragging anywhere within a 2D window. The middle button expands the corresponding window to fullscreen within the four window view. \image html Views_Choices.png "Layout Choices" The right button allows you to choose between many different layouts of the four window view to use the one most suited to your task. -\section QmitkExtApplicationUserManualMenu Menu +\section MITKManualMainPageMenu Menu -\subsection QmitkExtApplicationUserManualFile File +\subsection MITKManualMainPageFile File This dialog allows you to save, load and clear entire projects, this includes any nodes in the data manager. -\subsection QmitkExtApplicationUserManualEdit Edit +\subsection MITKManualMainPageEdit Edit This dialog supports undo and redo operations as well as the image navigator, which gives you sliders to navigate through the data quickly. -\subsection QmitkExtApplicationUserManualWindow Window +\subsection MITKManualMainPageWindow Window This dialog allows you to open a new window, change between perspectives and reset your current one to default settings. If you want to use an operation of a certain perspective within another perspective the "Show View" menu allows to select a specific function that is opened and can be moved within the working areas according to your wishes. Be aware that not every function works with every perspective in a meaningful way. The Preferences dialog allows you to adjust and save your custom settings. \image html Window_Dropdown.png "Preferences" -\subsection QmitkExtApplicationUserManualHelp Help +\subsection MITKManualMainPageHelp Help This dialog contains this help, the welcome screen and information about MITK 3M3. -\section QmitkExtApplicationUserManualLevelWindow Levelwindow +\section MITKManualMainPageLevelWindow Levelwindow Once an image is loaded the levelwindow appears to the right hand side of the four window view. With this tool you can adjust the range of grey values displayed and the gradient between them. Moving the lower boundary up results in any pixels having a value lower than that boundary to be displayed as black. Lowering the upper boundary causes all pixels having a value higher than it to be displayed as white. The pixels with a value between the lower and upper boundary are displayed in different shades of grey. This way a smaller levelwindow results in higher contrasts while cutting of the information outside its range whereas a larger levelwindow displays more information at the cost of contrast and detail. You can pick the levelwindow with the mouse to move it up and down, while moving the mouse cursor to the left or right to change its size. Picking one of the boundaries with a left click allows you to change the size symmetrically. Holding CTRL and clicking a boundary adjusts only that value. -\section QmitkExtApplicationUserManualMemoryUsage System Load Indicator +\section MITKManualMainPageMemoryUsage System Load Indicator -The System Load Indicator in the lower right hand corner of the screen gives information about the memory currently required by the MITK ExtApplication. Keep in mind that image processing is a highly memory intensive task and monitor the indicator to avoid your system freezing while constantly swapping to the hard drive. +The System Load Indicator in the lower right hand corner of the screen gives information about the memory currently required by the MITK application. Keep in mind that image processing is a highly memory intensive task and monitor the indicator to avoid your system freezing while constantly swapping to the hard drive. -\section QmitkExtApplicationUserManualViews Views +\section MITKManualMainPageViews Views Each solution for a specific problem that is self contained is realized as a single view. Thus you can create a workflow for your problem by combining the capabilities of different views to suit your needs. -One elegant way to do this is by combining views in \ref QmitkExtApplicationUserManualPerspectives. +One elegant way to do this is by combining views in \ref MITKManualMainPagePerspectives. By pressing and holding the left mouse button on a views tab you can move it around to suit your needs, even out of the application window. -\section QmitkExtApplicationUserManualPerspectives Perspectives +\section MITKManualMainPagePerspectives Perspectives The different tasks that arise in medical imaging need very different approaches. To acknowledge this circumstance MITK supplies a framework that can be build uppon by very different solutions to those tasks. These solutions are called perspectives, each of them works independently of others although they might be used in sequence to achieve the solution of more difficult problems. It is possible to switch between the perspectives using the "Window"->"Open Perspective" dialog. -See \ref QmitkExtApplicationUserManualMenu for more information about switching perspectives. +See \ref MITKManualMainPageMenu for more information about switching perspectives. */ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Top_Right_Corner_Menu.png b/Documentation/Doxygen/UserManual/Top_Right_Corner_Menu.png similarity index 100% rename from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Top_Right_Corner_Menu.png rename to Documentation/Doxygen/UserManual/Top_Right_Corner_Menu.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Views_Choices.png b/Documentation/Doxygen/UserManual/Views_Choices.png similarity index 100% rename from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Views_Choices.png rename to Documentation/Doxygen/UserManual/Views_Choices.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Window_Dropdown.png b/Documentation/Doxygen/UserManual/Window_Dropdown.png similarity index 100% rename from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Window_Dropdown.png rename to Documentation/Doxygen/UserManual/Window_Dropdown.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/GUI_Commented.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/GUI_Commented.png deleted file mode 100644 index 22ca0a4211..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/GUI_Commented.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Open_Perspective.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Open_Perspective.png deleted file mode 100644 index 5d48dea11e..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Open_Perspective.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/QmitkDiffusionImagingAppUserManual.dox b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/QmitkDiffusionImagingAppUserManual.dox index 4c0d37c6a0..8e54e9153d 100644 --- a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/QmitkDiffusionImagingAppUserManual.dox +++ b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/QmitkDiffusionImagingAppUserManual.dox @@ -1,120 +1,10 @@ /** -\bundlemainpage{org_diffusionapplication} The Main Application +\bundlemainpage{org_diffusionapplication} Using The Diffusion Imaging Application -Welcome to the MITK ExtApplication, build with the Medical Imaging Toolkit ( http://mitk.org/ ). +\section What is the Diffusion Imaging Application -Available sections: - - \ref QmitkDiffusionApplicationUserManualOverview - - \ref QmitkDiffusionApplicationUserManualUserInterface - - \ref QmitkDiffusionApplicationUserManualPerspectives +The Diffusion Imaging Application contains selected views for the analysis of images of the human brain. These encompass the views developed by the Neuroimaging Group of the Division Medical and Biological Informatics as well as basic image processing views such as segmentation and volumevisualization. -\section QmitkDiffusionApplicationUserManualOverview About MITK and MITK ExtApplication +For a basic guide to MITK see \subpage MITKManualMainPage . -MITK is an open-source framework that was originally developed as a common framework for Ph.D. students in the Division of Medical and Biological Informatics (MBI) at the German Cancer Research Center. MITK aims at supporting the development of leading-edge medical imaging software with a high degree of interaction. - -MITK re-uses virtually anything from VTK and ITK. Thus, it is not at all a competitor to VTK or ITK, but an extension, which tries to ease the combination of both and to add features not supported by VTK or ITK. - -Research institutes, medical professionals and companies alike can use MITK as a basic framework for their research and even commercial (thorough code research needed) software due to the BSD-like software license. - -Research institutes will profit from the high level of integration of ITK and VTK enhanced with data management, advanced visualization and interaction functionality in a single framework that is supported by a wide variety of researchers and developers. You will not have to reinvent the wheel over and over and can concentrate on your work. - -Medical Professionals will profit from MITK and the MITK ExtApplication by using its basic functionalities for research projects. But nonetheless they will be better off, unless they are programmers themselves, to cooperate with a research institute developing with MITK to get the functionalitiy they need. MITK and the presented MITK ExtApplication are not certified medical products and may be used in a research setting only. They must not be used in patient care. - -MITK ExtApplication is a demonstration of the capabilites of the MITK framework and has been created by the Division of Medical and Biological Informatics (MBI) at the German Cancer Research Center. - -\section QmitkDiffusionApplicationUserManualUserInterface The User Interface - -The layout of the MITK ExtApplication is designed to give a clear distinction between the different work areas. The following figure gives an overview of the main sections of the user interface. - -\image html GUI_Commented.png "The MITK ExtApplication User Interface" - -The datamanager and the \ref QmitkDiffusionApplicationUserManualPerspectives have their own help sections. This document explains the use of: - - The \ref QmitkDiffusionApplicationUserManualMultiWidget - - The \ref QmitkDiffusionApplicationUserManualMenu - - The \ref QmitkDiffusionApplicationUserManualLevelWindow - - The \ref QmitkDiffusionApplicationUserManualMemoryUsage - - The \ref QmitkDiffusionApplicationUserManualViews - -\section QmitkDiffusionApplicationUserManualMultiWidget Four Window View - -\subsection QmitkDiffusionApplicationUserManualMultiWidgetOverview Overview - -The four window view is the heart of the MITK ExtApplication image viewing. The standard layout is three 2D windows and one 3D window, with the transversal window in the top left quarter, the sagittal window in the top right quarter, the coronal window in the lower left quarter and the 3D window in the lower right quarter. The different planes form a crosshair that can be seen in the 3D window. - -Once you select a point within the picture, informations about it are displayed at the bottom of the screen. - -\subsection QmitkDiffusionApplicationUserManualMultiWidgetNavigation Navigation - -Left click in any of the 2D windows centers the crosshair on that point. Pressing the right mouse button and moving the mouse zooms in and out. By scrolling with the mouse wheel you can navigate through the slices of the active window and pressing the mouse wheel while moving the mouse pans the image section. - -In the 3D window you can rotate the object by pressing the left mouse button and moving the mouse, zoom either with the right mouse button as in 2D or with the mouse wheel, and pan the object by moving the mouse while the mouse wheel is pressed. Placing the cursor within the 3D window and holding the "F" key allows free flight into the 3D view. - -\subsection QmitkDiffusionApplicationUserManualMultiWidgetCustomizingViews Customizing - -By moving the cursor to the upper right corner of any window you can activate the window menu. It consists of three buttons. - -\image html Crosshair_Modes.png "Crosshair" - -The crosshair button allows you toggle the crosshair, reset the view and change the behaviour of the planes. - -Activating either of the rotation modes allows you to rotate the planes visible in a 2D window by moving the mouse cursor close to them and click and dragging once it changes to indicate that rotation can be done. - -The swivel mode is recommended only for advanced users as the planes can be moved freely by clicking and dragging anywhere within a 2D window. - - -The middle button expands the corresponding window to fullscreen within the four window view. - -\image html Views_Choices.png "Layout Choices" - -The right button allows you to choose between many different layouts of the four window view to use the one most suited to your task. - -\section QmitkDiffusionApplicationUserManualMenu Menu - -\subsection QmitkDiffusionApplicationUserManualFile File -This dialog allows you to save, load and clear entire projects, this includes any nodes in the data manager. - -\subsection QmitkDiffusionApplicationUserManualEdit Edit -This dialog supports undo and redo operations as well as the image navigator, which gives you sliders to navigate through the data quickly. - -\subsection QmitkDiffusionApplicationUserManualWindow Window - -This dialog allows you to open a new window, change between perspectives and reset your current one to default settings. - - -If you want to use an operation of a certain perspective within another perspective the "Show View" menu allows to select a specific function that is opened and can be moved within the working areas according to your wishes. Be aware that not every function works with every perspective in a meaningful way. - -The Preferences dialog allows you to adjust and save your custom settings. - -\image html Window_Dropdown.png "Preferences" - -\subsection QmitkDiffusionApplicationUserManualHelp Help -This dialog contains this help, the welcome screen and information about MITK 3M3. - -\section QmitkDiffusionApplicationUserManualLevelWindow Levelwindow - -Once an image is loaded the levelwindow appears to the right hand side of the four window view. With this tool you can adjust the range of grey values displayed and the gradient between them. Moving the lower boundary up results in any pixels having a value lower than that boundary to be displayed as black. Lowering the upper boundary causes all pixels having a value higher than it to be displayed as white. - -The pixels with a value between the lower and upper boundary are displayed in different shades of grey. This way a smaller levelwindow results in higher contrasts while cutting of the information outside its range whereas a larger levelwindow displays more information at the cost of contrast and detail. - -You can pick the levelwindow with the mouse to move it up and down, while moving the mouse cursor to the left or right to change its size. Picking one of the boundaries with a left click allows you to change the size symmetrically. Holding CTRL and clicking a boundary adjusts only that value. - -\section QmitkDiffusionApplicationUserManualMemoryUsage System Load Indicator - -The System Load Indicator in the lower right hand corner of the screen gives information about the memory currently required by the MITK ExtApplication. Keep in mind that image processing is a highly memory intensive task and monitor the indicator to avoid your system freezing while constantly swapping to the hard drive. - -\section QmitkDiffusionApplicationUserManualViews Views - -Each solution for a specific problem that is self contained is realized as a single view. Thus you can create a workflow for your problem by combining the capabilities of different views to suit your needs. -One elegant way to do this is by combining views in \ref QmitkDiffusionApplicationUserManualPerspectives. - -By pressing and holding the left mouse button on a views tab you can move it around to suit your needs, even out of the application window. - -\section QmitkDiffusionApplicationUserManualPerspectives Perspectives - -The different tasks that arise in medical imaging need very different approaches. To acknowledge this circumstance MITK supplies a framework that can be build uppon by very different solutions to those tasks. These solutions are called perspectives, each of them works independently of others although they might be used in sequence to achieve the solution of more difficult problems. - -It is possible to switch between the perspectives using the "Window"->"Open Perspective" dialog. - - -See \ref QmitkDiffusionApplicationUserManualMenu for more information about switching perspectives. */ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Show_Views.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Show_Views.png deleted file mode 100644 index 722ed00d39..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Show_Views.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Welcome.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Welcome.png deleted file mode 100644 index 5d457e766c..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/Welcome.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/theme_black.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/theme_black.png deleted file mode 100644 index a6fefe17d6..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/theme_black.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/theme_default.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/theme_default.png deleted file mode 100644 index 4848e4f3c9..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/documentation/UserManual/theme_default.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Crosshair_Modes.png b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Crosshair_Modes.png deleted file mode 100644 index ffc2717c6f..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Crosshair_Modes.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/GUI.png b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/GUI.png deleted file mode 100644 index a31fbfb5c2..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/GUI.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/GUI_Commented.png b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/GUI_Commented.png deleted file mode 100644 index 22ca0a4211..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/GUI_Commented.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Open_Perspective.png b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Open_Perspective.png deleted file mode 100644 index 5d48dea11e..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Open_Perspective.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/QmitkDTIAtlasAppUserManual.dox b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/QmitkDTIAtlasAppUserManual.dox index 02abe53277..4cff94239f 100644 --- a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/QmitkDTIAtlasAppUserManual.dox +++ b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/QmitkDTIAtlasAppUserManual.dox @@ -1,120 +1,10 @@ /** -\bundlemainpage{org_dti_atlas_application} The Main Application +\bundlemainpage{org_dti_atlas_application} Using The DTI Atlas Application -Welcome to the MITK ExtApplication, build with the Medical Imaging Toolkit ( http://mitk.org/ ). +\section What is the DTI Atlas Application -Available sections: - - \ref QmitkDTIAtlasApplicationUserManualOverview - - \ref QmitkDTIAtlasApplicationUserManualUserInterface - - \ref QmitkDTIAtlasApplicationUserManualPerspectives +The DTI Atlas Application is a viewer for MR, diffusion tensor and fibre images and contains no additional functionality. The welcome page allows the selection of which example data to examine. -\section QmitkDTIAtlasApplicationUserManualOverview About MITK and MITK ExtApplication +For a basic guide to MITK see \subpage MITKManualMainPage . -MITK is an open-source framework that was originally developed as a common framework for Ph.D. students in the Division of Medical and Biological Informatics (MBI) at the German Cancer Research Center. MITK aims at supporting the development of leading-edge medical imaging software with a high degree of interaction. - -MITK re-uses virtually anything from VTK and ITK. Thus, it is not at all a competitor to VTK or ITK, but an extension, which tries to ease the combination of both and to add features not supported by VTK or ITK. - -Research institutes, medical professionals and companies alike can use MITK as a basic framework for their research and even commercial (thorough code research needed) software due to the BSD-like software license. - -Research institutes will profit from the high level of integration of ITK and VTK enhanced with data management, advanced visualization and interaction functionality in a single framework that is supported by a wide variety of researchers and developers. You will not have to reinvent the wheel over and over and can concentrate on your work. - -Medical Professionals will profit from MITK and the MITK ExtApplication by using its basic functionalities for research projects. But nonetheless they will be better off, unless they are programmers themselves, to cooperate with a research institute developing with MITK to get the functionalitiy they need. MITK and the presented MITK ExtApplication are not certified medical products and may be used in a research setting only. They must not be used in patient care. - -MITK ExtApplication is a demonstration of the capabilites of the MITK framework and has been created by the Division of Medical and Biological Informatics (MBI) at the German Cancer Research Center. - -\section QmitkDTIAtlasApplicationUserManualUserInterface The User Interface - -The layout of the MITK ExtApplication is designed to give a clear distinction between the different work areas. The following figure gives an overview of the main sections of the user interface. - -\image html GUI_Commented.png "The MITK ExtApplication User Interface" - -The datamanager and the \ref QmitkDTIAtlasApplicationUserManualPerspectives have their own help sections. This document explains the use of: - - The \ref QmitkDTIAtlasApplicationUserManualMultiWidget - - The \ref QmitkDTIAtlasApplicationUserManualMenu - - The \ref QmitkDTIAtlasApplicationUserManualLevelWindow - - The \ref QmitkDTIAtlasApplicationUserManualMemoryUsage - - The \ref QmitkDTIAtlasApplicationUserManualViews - -\section QmitkDTIAtlasApplicationUserManualMultiWidget Four Window View - -\subsection QmitkDTIAtlasApplicationUserManualMultiWidgetOverview Overview - -The four window view is the heart of the MITK ExtApplication image viewing. The standard layout is three 2D windows and one 3D window, with the transversal window in the top left quarter, the sagittal window in the top right quarter, the coronal window in the lower left quarter and the 3D window in the lower right quarter. The different planes form a crosshair that can be seen in the 3D window. - -Once you select a point within the picture, informations about it are displayed at the bottom of the screen. - -\subsection QmitkDTIAtlasApplicationUserManualMultiWidgetNavigation Navigation - -Left click in any of the 2D windows centers the crosshair on that point. Pressing the right mouse button and moving the mouse zooms in and out. By scrolling with the mouse wheel you can navigate through the slices of the active window and pressing the mouse wheel while moving the mouse pans the image section. - -In the 3D window you can rotate the object by pressing the left mouse button and moving the mouse, zoom either with the right mouse button as in 2D or with the mouse wheel, and pan the object by moving the mouse while the mouse wheel is pressed. Placing the cursor within the 3D window and holding the "F" key allows free flight into the 3D view. - -\subsection QmitkDTIAtlasApplicationUserManualMultiWidgetCustomizingViews Customizing - -By moving the cursor to the upper right corner of any window you can activate the window menu. It consists of three buttons. - -\image html Crosshair_Modes.png "Crosshair" - -The crosshair button allows you toggle the crosshair, reset the view and change the behaviour of the planes. - -Activating either of the rotation modes allows you to rotate the planes visible in a 2D window by moving the mouse cursor close to them and click and dragging once it changes to indicate that rotation can be done. - -The swivel mode is recommended only for advanced users as the planes can be moved freely by clicking and dragging anywhere within a 2D window. - - -The middle button expands the corresponding window to fullscreen within the four window view. - -\image html Views_Choices.png "Layout Choices" - -The right button allows you to choose between many different layouts of the four window view to use the one most suited to your task. - -\section QmitkDTIAtlasApplicationUserManualMenu Menu - -\subsection QmitkDTIAtlasApplicationUserManualFile File -This dialog allows you to save, load and clear entire projects, this includes any nodes in the data manager. - -\subsection QmitkDTIAtlasApplicationUserManualEdit Edit -This dialog supports undo and redo operations as well as the image navigator, which gives you sliders to navigate through the data quickly. - -\subsection QmitkDTIAtlasApplicationUserManualWindow Window - -This dialog allows you to open a new window, change between perspectives and reset your current one to default settings. - - -If you want to use an operation of a certain perspective within another perspective the "Show View" menu allows to select a specific function that is opened and can be moved within the working areas according to your wishes. Be aware that not every function works with every perspective in a meaningful way. - -The Preferences dialog allows you to adjust and save your custom settings. - -\image html Window_Dropdown.png "Preferences" - -\subsection QmitkDTIAtlasApplicationUserManualHelp Help -This dialog contains this help, the welcome screen and information about MITK 3M3. - -\section QmitkDTIAtlasApplicationUserManualLevelWindow Levelwindow - -Once an image is loaded the levelwindow appears to the right hand side of the four window view. With this tool you can adjust the range of grey values displayed and the gradient between them. Moving the lower boundary up results in any pixels having a value lower than that boundary to be displayed as black. Lowering the upper boundary causes all pixels having a value higher than it to be displayed as white. - -The pixels with a value between the lower and upper boundary are displayed in different shades of grey. This way a smaller levelwindow results in higher contrasts while cutting of the information outside its range whereas a larger levelwindow displays more information at the cost of contrast and detail. - -You can pick the levelwindow with the mouse to move it up and down, while moving the mouse cursor to the left or right to change its size. Picking one of the boundaries with a left click allows you to change the size symmetrically. Holding CTRL and clicking a boundary adjusts only that value. - -\section QmitkDTIAtlasApplicationUserManualMemoryUsage System Load Indicator - -The System Load Indicator in the lower right hand corner of the screen gives information about the memory currently required by the MITK ExtApplication. Keep in mind that image processing is a highly memory intensive task and monitor the indicator to avoid your system freezing while constantly swapping to the hard drive. - -\section QmitkDTIAtlasApplicationUserManualViews Views - -Each solution for a specific problem that is self contained is realized as a single view. Thus you can create a workflow for your problem by combining the capabilities of different views to suit your needs. -One elegant way to do this is by combining views in \ref QmitkDTIAtlasApplicationUserManualPerspectives. - -By pressing and holding the left mouse button on a views tab you can move it around to suit your needs, even out of the application window. - -\section QmitkDTIAtlasApplicationUserManualPerspectives Perspectives - -The different tasks that arise in medical imaging need very different approaches. To acknowledge this circumstance MITK supplies a framework that can be build uppon by very different solutions to those tasks. These solutions are called perspectives, each of them works independently of others although they might be used in sequence to achieve the solution of more difficult problems. - -It is possible to switch between the perspectives using the "Window"->"Open Perspective" dialog. - - -See \ref QmitkDTIAtlasApplicationUserManualMenu for more information about switching perspectives. */ diff --git a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Show_Views.png b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Show_Views.png deleted file mode 100644 index 722ed00d39..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Show_Views.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Top_Right_Corner_Menu.png b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Top_Right_Corner_Menu.png deleted file mode 100644 index 865400cc98..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Top_Right_Corner_Menu.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Views_Choices.png b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Views_Choices.png deleted file mode 100644 index 26c6c332d8..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Views_Choices.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Welcome.png b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Welcome.png deleted file mode 100644 index 5d457e766c..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Welcome.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Window_Dropdown.png b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Window_Dropdown.png deleted file mode 100644 index b3af19556e..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/Window_Dropdown.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/theme_black.png b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/theme_black.png deleted file mode 100644 index a6fefe17d6..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/theme_black.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/theme_default.png b/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/theme_default.png deleted file mode 100644 index 4848e4f3c9..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.dtiatlasapp/documentation/UserManual/theme_default.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Crosshair_Modes.png b/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Crosshair_Modes.png deleted file mode 100644 index ffc2717c6f..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Crosshair_Modes.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/GUI.png b/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/GUI.png deleted file mode 100644 index a31fbfb5c2..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/GUI.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/QmitkExtapplicationUserManual.dox b/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/QmitkExtapplicationUserManual.dox index 63dccc44fe..cbadb9be5a 100644 --- a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/QmitkExtapplicationUserManual.dox +++ b/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/QmitkExtapplicationUserManual.dox @@ -1,120 +1,14 @@ /** -\bundlemainpage{org_extapplication} The Main Application +\bundlemainpage{org_extapplication} Using The Ext Application -Welcome to the MITK ExtApplication, build with the Medical Imaging Toolkit ( http://mitk.org/ ). +\section What is the Ext App -Available sections: - - \ref QmitkExtApplicationUserManualOverview - - \ref QmitkExtApplicationUserManualUserInterface - - \ref QmitkExtApplicationUserManualPerspectives +The MITK Ext Application is used by developers. As such the kind and number of views it contains is highly variable and dependent on the specific build. Typically it contains no special perspectives and whatever views the developer deemed desirable. Be aware, that it may contain views which are work in progress and may behave erratically. -\section QmitkExtApplicationUserManualOverview About MITK and MITK ExtApplication +If you have been given such an executable by someone, please refer to the appropriate section of the \ref ModuleListPage for up to date usage information on any module. -MITK is an open-source framework that was originally developed as a common framework for Ph.D. students in the Division of Medical and Biological Informatics (MBI) at the German Cancer Research Center. MITK aims at supporting the development of leading-edge medical imaging software with a high degree of interaction. +If you are using a nightly installer, the Ext Application will contain nearly all views available in MITK and as such most likely will seem confusing. Again the \ref ModuleListPage might be a good starting point if you want to have a rough idea of what could be of interest to you. -MITK re-uses virtually anything from VTK and ITK. Thus, it is not at all a competitor to VTK or ITK, but an extension, which tries to ease the combination of both and to add features not supported by VTK or ITK. +For a basic guide to MITK see \subpage MITKManualMainPage . -Research institutes, medical professionals and companies alike can use MITK as a basic framework for their research and even commercial (thorough code research needed) software due to the BSD-like software license. - -Research institutes will profit from the high level of integration of ITK and VTK enhanced with data management, advanced visualization and interaction functionality in a single framework that is supported by a wide variety of researchers and developers. You will not have to reinvent the wheel over and over and can concentrate on your work. - -Medical Professionals will profit from MITK and the MITK ExtApplication by using its basic functionalities for research projects. But nonetheless they will be better off, unless they are programmers themselves, to cooperate with a research institute developing with MITK to get the functionalitiy they need. MITK and the presented MITK ExtApplication are not certified medical products and may be used in a research setting only. They must not be used in patient care. - -MITK ExtApplication is a demonstration of the capabilites of the MITK framework and has been created by the Division of Medical and Biological Informatics (MBI) at the German Cancer Research Center. - -\section QmitkExtApplicationUserManualUserInterface The User Interface - -The layout of the MITK ExtApplication is designed to give a clear distinction between the different work areas. The following figure gives an overview of the main sections of the user interface. - -\image html GUI_Commented.png "The MITK ExtApplication User Interface" - -The datamanager and the \ref QmitkExtApplicationUserManualPerspectives have their own help sections. This document explains the use of: - - The \ref QmitkExtApplicationUserManualMultiWidget - - The \ref QmitkExtApplicationUserManualMenu - - The \ref QmitkExtApplicationUserManualLevelWindow - - The \ref QmitkExtApplicationUserManualMemoryUsage - - The \ref QmitkExtApplicationUserManualViews - -\section QmitkExtApplicationUserManualMultiWidget Four Window View - -\subsection QmitkExtApplicationUserManualMultiWidgetOverview Overview - -The four window view is the heart of the MITK ExtApplication image viewing. The standard layout is three 2D windows and one 3D window, with the transversal window in the top left quarter, the sagittal window in the top right quarter, the coronal window in the lower left quarter and the 3D window in the lower right quarter. The different planes form a crosshair that can be seen in the 3D window. - -Once you select a point within the picture, informations about it are displayed at the bottom of the screen. - -\subsection QmitkExtApplicationUserManualMultiWidgetNavigation Navigation - -Left click in any of the 2D windows centers the crosshair on that point. Pressing the right mouse button and moving the mouse zooms in and out. By scrolling with the mouse wheel you can navigate through the slices of the active window and pressing the mouse wheel while moving the mouse pans the image section. - -In the 3D window you can rotate the object by pressing the left mouse button and moving the mouse, zoom either with the right mouse button as in 2D or with the mouse wheel, and pan the object by moving the mouse while the mouse wheel is pressed. Placing the cursor within the 3D window and holding the "F" key allows free flight into the 3D view. - -\subsection QmitkExtApplicationUserManualMultiWidgetCustomizingViews Customizing - -By moving the cursor to the upper right corner of any window you can activate the window menu. It consists of three buttons. - -\image html Crosshair_Modes.png "Crosshair" - -The crosshair button allows you toggle the crosshair, reset the view and change the behaviour of the planes. - -Activating either of the rotation modes allows you to rotate the planes visible in a 2D window by moving the mouse cursor close to them and click and dragging once it changes to indicate that rotation can be done. - -The swivel mode is recommended only for advanced users as the planes can be moved freely by clicking and dragging anywhere within a 2D window. - - -The middle button expands the corresponding window to fullscreen within the four window view. - -\image html Views_Choices.png "Layout Choices" - -The right button allows you to choose between many different layouts of the four window view to use the one most suited to your task. - -\section QmitkExtApplicationUserManualMenu Menu - -\subsection QmitkExtApplicationUserManualFile File -This dialog allows you to save, load and clear entire projects, this includes any nodes in the data manager. - -\subsection QmitkExtApplicationUserManualEdit Edit -This dialog supports undo and redo operations as well as the image navigator, which gives you sliders to navigate through the data quickly. - -\subsection QmitkExtApplicationUserManualWindow Window - -This dialog allows you to open a new window, change between perspectives and reset your current one to default settings. - - -If you want to use an operation of a certain perspective within another perspective the "Show View" menu allows to select a specific function that is opened and can be moved within the working areas according to your wishes. Be aware that not every function works with every perspective in a meaningful way. - -The Preferences dialog allows you to adjust and save your custom settings. - -\image html Window_Dropdown.png "Preferences" - -\subsection QmitkExtApplicationUserManualHelp Help -This dialog contains this help, the welcome screen and information about MITK 3M3. - -\section QmitkExtApplicationUserManualLevelWindow Levelwindow - -Once an image is loaded the levelwindow appears to the right hand side of the four window view. With this tool you can adjust the range of grey values displayed and the gradient between them. Moving the lower boundary up results in any pixels having a value lower than that boundary to be displayed as black. Lowering the upper boundary causes all pixels having a value higher than it to be displayed as white. - -The pixels with a value between the lower and upper boundary are displayed in different shades of grey. This way a smaller levelwindow results in higher contrasts while cutting of the information outside its range whereas a larger levelwindow displays more information at the cost of contrast and detail. - -You can pick the levelwindow with the mouse to move it up and down, while moving the mouse cursor to the left or right to change its size. Picking one of the boundaries with a left click allows you to change the size symmetrically. Holding CTRL and clicking a boundary adjusts only that value. - -\section QmitkExtApplicationUserManualMemoryUsage System Load Indicator - -The System Load Indicator in the lower right hand corner of the screen gives information about the memory currently required by the MITK ExtApplication. Keep in mind that image processing is a highly memory intensive task and monitor the indicator to avoid your system freezing while constantly swapping to the hard drive. - -\section QmitkExtApplicationUserManualViews Views - -Each solution for a specific problem that is self contained is realized as a single view. Thus you can create a workflow for your problem by combining the capabilities of different views to suit your needs. -One elegant way to do this is by combining views in \ref QmitkExtApplicationUserManualPerspectives. - -By pressing and holding the left mouse button on a views tab you can move it around to suit your needs, even out of the application window. - -\section QmitkExtApplicationUserManualPerspectives Perspectives - -The different tasks that arise in medical imaging need very different approaches. To acknowledge this circumstance MITK supplies a framework that can be build uppon by very different solutions to those tasks. These solutions are called perspectives, each of them works independently of others although they might be used in sequence to achieve the solution of more difficult problems. - -It is possible to switch between the perspectives using the "Window"->"Open Perspective" dialog. - - -See \ref QmitkExtApplicationUserManualMenu for more information about switching perspectives. */ diff --git a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Top_Right_Corner_Menu.png b/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Top_Right_Corner_Menu.png deleted file mode 100644 index 865400cc98..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Top_Right_Corner_Menu.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Views_Choices.png b/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Views_Choices.png deleted file mode 100644 index 26c6c332d8..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Views_Choices.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Window_Dropdown.png b/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Window_Dropdown.png deleted file mode 100644 index b3af19556e..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.extapplication/documentation/UserManual/Window_Dropdown.png and /dev/null differ