diff --git a/Modules/XNAT/src/QmitkXnatSubjectWidgetControls.ui b/Modules/XNAT/src/QmitkXnatSubjectWidgetControls.ui index 3145e9a88b..49b17fb364 100644 --- a/Modules/XNAT/src/QmitkXnatSubjectWidgetControls.ui +++ b/Modules/XNAT/src/QmitkXnatSubjectWidgetControls.ui @@ -1,146 +1,146 @@ QmitkXnatSubjectWidgetControls true 0 0 350 225 Qmitk Template + + + + true + + + Gender: Birthdate: Handedness: Height (inches): Weight (lbs) 75 true Subject Information Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter true true YYYY-MM-DD true true true true ID*: * mandatory field - - - - true - - - diff --git a/Plugins/org.mitk.gui.qt.xnat/src/internal/QmitkXnatTreeBrowserView.cpp b/Plugins/org.mitk.gui.qt.xnat/src/internal/QmitkXnatTreeBrowserView.cpp index bdd062b7ee..9388bee8d7 100644 --- a/Plugins/org.mitk.gui.qt.xnat/src/internal/QmitkXnatTreeBrowserView.cpp +++ b/Plugins/org.mitk.gui.qt.xnat/src/internal/QmitkXnatTreeBrowserView.cpp @@ -1,499 +1,529 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "QmitkXnatTreeBrowserView.h" // Qmitk #include "QmitkXnatObjectEditorInput.h" #include "QmitkXnatEditor.h" #include "org_mitk_gui_qt_xnatinterface_Activator.h" // Blueberry #include #include // CTK XNAT Core #include #include #include #include // MITK XNAT #include #include #include #include // Qt #include #include #include #include #include #include #include // MITK #include #include // Poco #include const std::string QmitkXnatTreeBrowserView::VIEW_ID = "org.mitk.views.xnat.treebrowser"; QmitkXnatTreeBrowserView::QmitkXnatTreeBrowserView() : m_TreeModel(new ctkXnatTreeModel()), m_Tracker(0), m_DownloadPath(berry::Platform::GetPreferencesService()->GetSystemPreferences()->Node("/XnatConnection")->Get("Download Path", "")), m_DataStorageServiceTracker(mitk::org_mitk_gui_qt_xnatinterface_Activator::GetContext()) { m_DataStorageServiceTracker.open(); // Set DownloadPath if (m_DownloadPath.isEmpty()) { QString xnatFolder = "XNAT_DOWNLOADS"; QDir dir(mitk::org_mitk_gui_qt_xnatinterface_Activator::GetContext()->getDataFile("").absoluteFilePath()); dir.mkdir(xnatFolder); dir.setPath(dir.path() + "/" + xnatFolder); m_DownloadPath = dir.path() + "/"; } } QmitkXnatTreeBrowserView::~QmitkXnatTreeBrowserView() { m_DataStorageServiceTracker.close(); delete m_TreeModel; delete m_Tracker; } void QmitkXnatTreeBrowserView::SetFocus() { } void QmitkXnatTreeBrowserView::CreateQtPartControl(QWidget *parent) { // Create GUI widgets from the Qt Designer's .ui file m_Controls.setupUi(parent); m_Controls.treeView->setModel(m_TreeModel); m_Controls.treeView->header()->hide(); m_Controls.labelError->setText("Please use the 'Connect' button in the Preferences."); m_Controls.labelError->setStyleSheet("QLabel { color: red; }"); m_SelectionProvider = new berry::QtSelectionProvider(); this->SetSelectionProvider(); m_Controls.treeView->setSelectionMode(QAbstractItemView::SingleSelection); m_Controls.treeView->setContextMenuPolicy(Qt::CustomContextMenu); m_Tracker = new mitk::XnatSessionTracker(mitk::org_mitk_gui_qt_xnatinterface_Activator::GetXnatModuleContext()); m_NodeMenu = new QMenu(m_Controls.treeView); connect(m_Controls.treeView, SIGNAL(clicked(const QModelIndex&)), SLOT(itemSelected(const QModelIndex&))); connect(m_Controls.treeView, SIGNAL(customContextMenuRequested(const QPoint&)), this, SLOT(NodeTableViewContextMenuRequested(const QPoint&))); connect(m_Tracker, SIGNAL(AboutToBeClosed(ctkXnatSession*)), this, SLOT(CleanTreeModel(ctkXnatSession*))); connect(m_Tracker, SIGNAL(Opened(ctkXnatSession*)), this, SLOT(UpdateSession(ctkXnatSession*))); m_Tracker->Open(); ctkXnatSession* session; try { session = mitk::org_mitk_gui_qt_xnatinterface_Activator::GetXnatModuleContext()->GetService( mitk::org_mitk_gui_qt_xnatinterface_Activator::GetXnatModuleContext()->GetServiceReference()); } catch (std::invalid_argument) { session = 0; } if (session != 0) { m_Controls.labelError->setVisible(false); } else { m_Controls.labelError->setVisible(true); } connect(m_Controls.treeView, SIGNAL(activated(const QModelIndex&)), this, SLOT(OnActivatedNode(const QModelIndex&))); } void QmitkXnatTreeBrowserView::OnActivatedNode(const QModelIndex& index) { if (!index.isValid()) return; berry::IWorkbenchPage::Pointer page = GetSite()->GetPage(); QmitkXnatObjectEditorInput::Pointer oPtr(new QmitkXnatObjectEditorInput(index.data(Qt::UserRole).value())); berry::IEditorInput::Pointer editorInput(oPtr); berry::IEditorPart::Pointer reuseEditor = page->FindEditor(editorInput); if (reuseEditor) { // Just set it activ page->Activate(reuseEditor); } else { QList editors = page->FindEditors(berry::IEditorInput::Pointer(0), QmitkXnatEditor::EDITOR_ID, berry::IWorkbenchPage::MATCH_ID); if (editors.isEmpty()) { ctkXnatFile* file = dynamic_cast(oPtr->GetXnatObject()); if (file != NULL) { // If the selected node is a file, so show it in MITK InternalFileDownload(index, true); } else { // No XnatEditor is currently open, create a new one page->OpenEditor(editorInput, QmitkXnatEditor::EDITOR_ID); } } else { // Reuse an existing editor reuseEditor = editors.front()->GetEditor(true); page->ReuseEditor(reuseEditor.Cast(), editorInput); page->Activate(reuseEditor); } } } void QmitkXnatTreeBrowserView::SetSelectionProvider() { GetSite()->SetSelectionProvider(m_SelectionProvider); } void QmitkXnatTreeBrowserView::UpdateSession(ctkXnatSession* session) { if (session != 0 && session->isOpen()) { m_Controls.labelError->setVisible(false); // Fill model and show in the GUI m_TreeModel->addDataModel(session->dataModel()); m_Controls.treeView->reset(); m_SelectionProvider->SetItemSelectionModel(m_Controls.treeView->selectionModel()); } } void QmitkXnatTreeBrowserView::CleanTreeModel(ctkXnatSession* session) { if (session != 0) { m_TreeModel->removeDataModel(session->dataModel()); m_Controls.treeView->reset(); } } void QmitkXnatTreeBrowserView::InternalFileDownload(const QModelIndex& index, bool loadData) { QVariant variant = m_TreeModel->data(index, Qt::UserRole); if (variant.isValid()) { ctkXnatFile* file = dynamic_cast(variant.value()); if (file != NULL) { QDir downDir(m_DownloadPath); QString filePath = m_DownloadPath + file->name(); // Testing if the file exists already if (downDir.exists(file->name())) { MITK_INFO << "File '" << file->name().toStdString() << "' already exists!"; } else { if (file->property("collection") == QString("DICOM")) { ctkXnatObject* parent = file->parent(); filePath = m_DownloadPath + parent->property("label") + ".zip"; parent->download(filePath); std::ifstream in(filePath.toStdString().c_str(), std::ios::binary); poco_assert(in); // decompress to XNAT_DOWNLOAD dir Poco::Zip::Decompress dec(in, Poco::Path(m_DownloadPath.toStdString())); dec.decompressAllFiles(); in.close(); QFile::remove(filePath); } else { MITK_INFO << "Download started ..."; MITK_INFO << "..."; file->download(filePath); // Testing if the file exists now if (downDir.exists(file->name())) { MITK_INFO << "Download of " << file->name().toStdString() << " was completed!"; } else { MITK_INFO << "Download of " << file->name().toStdString() << " failed!"; } } } if (downDir.exists(file->name()) || file->property("collection") == "DICOM") { if (loadData) { if (file->property("collection") == "DICOM") { // Search for the downloaded file an its file path QDirIterator it(m_DownloadPath, QStringList() << file->name(), QDir::Files, QDirIterator::Subdirectories); while (it.hasNext()) { it.next(); filePath = it.filePath(); } } if (filePath.isEmpty()) { MITK_INFO << "Decompressing failed!"; return; } else if (!QFile(filePath).exists()) { MITK_INFO << "Decompressing failed!"; return; } mitk::IDataStorageService* dsService = m_DataStorageServiceTracker.getService(); mitk::DataStorage::Pointer dataStorage = dsService->GetDataStorage()->GetDataStorage(); QStringList list; list << filePath; try { QmitkIOUtil::Load(list, *dataStorage); } catch (const mitk::Exception& e) { MITK_INFO << e; return; } mitk::RenderingManager::GetInstance()->InitializeViewsByBoundingObjects( dsService->GetDataStorage()->GetDataStorage()); } } } else { MITK_INFO << "Selection was not a file!"; } } } void QmitkXnatTreeBrowserView::OnContextMenuDownloadFile() { QModelIndex index = m_Controls.treeView->currentIndex(); InternalFileDownload(index, false); } void QmitkXnatTreeBrowserView::OnContextMenuDownloadAndOpenFile() { QModelIndex index = m_Controls.treeView->currentIndex(); InternalFileDownload(index, true); } void QmitkXnatTreeBrowserView::NodeTableViewContextMenuRequested(const QPoint & pos) { m_NodeMenu->clear(); QModelIndex index = m_Controls.treeView->indexAt(pos); QVariant variant = m_TreeModel->data(index, Qt::UserRole); if (variant.isValid()) { ctkXnatFile* file = dynamic_cast(variant.value()); if (file != NULL) { QAction* actShow = new QAction("Download and Open", m_NodeMenu); QAction* actDownload = new QAction("Download", m_NodeMenu); m_NodeMenu->addAction(actShow); m_NodeMenu->addAction(actDownload); connect(actShow, SIGNAL(triggered()), this, SLOT(OnContextMenuDownloadAndOpenFile())); connect(actDownload, SIGNAL(triggered()), this, SLOT(OnContextMenuDownloadFile())); m_NodeMenu->popup(QCursor::pos()); } ctkXnatProject* project = dynamic_cast(variant.value()); if (project != NULL) { QAction* actCreateSubject = new QAction("Create new subject", m_NodeMenu); m_NodeMenu->addAction(actCreateSubject); connect(actCreateSubject, SIGNAL(triggered()), this, SLOT(OnContextMenuCreateNewSubject())); m_NodeMenu->popup(QCursor::pos()); } + ctkXnatSubject* subject = dynamic_cast(variant.value()); + if (subject != NULL) + { + QAction* actCreateExperiment = new QAction("Create new experiment", m_NodeMenu); + m_NodeMenu->addAction(actCreateExperiment); + connect(actCreateExperiment, SIGNAL(triggered()), this, SLOT(OnContextMenuCreateNewExperiment())); + m_NodeMenu->popup(QCursor::pos()); + } } } void QmitkXnatTreeBrowserView::itemSelected(const QModelIndex& index) { QLayout* layout = m_Controls.infoVerticalLayout; QLayoutItem *child; while ((child = layout->takeAt(0)) != 0) { delete child->widget(); } QVariant variant = m_TreeModel->data(index, Qt::UserRole); if (variant.isValid()) { ctkXnatSession *session = mitk::org_mitk_gui_qt_xnatinterface_Activator::GetXnatModuleContext()->GetService( mitk::org_mitk_gui_qt_xnatinterface_Activator::GetXnatModuleContext()->GetServiceReference()); ctkXnatObject* object = variant.value(); ctkXnatProject* project = dynamic_cast(object); ctkXnatSubject* subject = dynamic_cast(object); ctkXnatExperiment* experiment = dynamic_cast(object); if (project != NULL) { QmitkXnatProjectWidget* widget = new QmitkXnatProjectWidget(QmitkXnatProjectWidget::Mode::INFO); widget->SetProject(project); layout->addWidget(widget); } else if (subject != NULL) { QMap paramMap; paramMap.insert("columns", "dob,gender,handedness,weight,height"); QUuid requestID = session->httpGet(QString("%1/subjects").arg(subject->parent()->resourceUri()), paramMap); QList results = session->httpSync(requestID); foreach(const QVariantMap& propertyMap, results) { QMapIterator it(propertyMap); bool isConcretSubject = false; if (it.hasNext()) { it.next(); QString str = it.key().toLatin1().data(); QVariant var = it.value(); // After CTK Change (subjectID = name) to (subjectID = ID) // CHANGE TO: if (var == subject->property("ID")) if (var == subject->property("URI").right(11)) { isConcretSubject = true; } else { isConcretSubject = false; } it.toFront(); } while (it.hasNext() && isConcretSubject) { it.next(); QString str = it.key().toLatin1().data(); QVariant var = it.value(); subject->setProperty(str, var); } } QmitkXnatSubjectWidget* widget = new QmitkXnatSubjectWidget(QmitkXnatSubjectWidget::Mode::INFO); widget->SetSubject(subject); layout->addWidget(widget); } else if (experiment != NULL) { QMap paramMap; paramMap.insert("columns", "date,time,scanner,modality"); QUuid requestID = session->httpGet(QString("%1/experiments").arg(experiment->parent()->resourceUri()), paramMap); QList results = session->httpSync(requestID); foreach(const QVariantMap& propertyMap, results) { QMapIterator it(propertyMap); bool isConcretExperiment = false; if (it.hasNext()) { it.next(); QString str = it.key().toLatin1().data(); QVariant var = it.value(); if (var == experiment->property("URI")) { isConcretExperiment = true; } else { isConcretExperiment = false; } it.toFront(); } while (it.hasNext() && isConcretExperiment) { it.next(); QString str = it.key().toLatin1().data(); QVariant var = it.value(); experiment->setProperty(str, var); } } QmitkXnatExperimentWidget* widget = new QmitkXnatExperimentWidget(QmitkXnatExperimentWidget::Mode::INFO); widget->SetExperiment(experiment); layout->addWidget(widget); } } } void QmitkXnatTreeBrowserView::OnContextMenuCreateNewSubject() { QModelIndex index = m_Controls.treeView->currentIndex(); QVariant variant = m_TreeModel->data(index, Qt::UserRole); if (variant.isValid()) { QmitkXnatCreateObjectDialog* dialog = new QmitkXnatCreateObjectDialog(QmitkXnatCreateObjectDialog::SpecificType::SUBJECT); if (dialog->exec() == QDialog::Accepted) { + ctkXnatProject* project = dynamic_cast(variant.value()); ctkXnatSubject* subject = dynamic_cast(dialog->GetXnatObject()); - subject->setParent(dynamic_cast(variant.value())); + subject->setParent(project); + subject->setId(subject->label()); subject->save(); + + // Get xnat session from micro service + ctkXnatSession* session = mitk::org_mitk_gui_qt_xnatinterface_Activator::GetXnatModuleContext()->GetService( + mitk::org_mitk_gui_qt_xnatinterface_Activator::GetXnatModuleContext()->GetServiceReference()); + + // Update View + m_TreeModel->removeDataModel(session->dataModel()); + UpdateSession(session); } } } void QmitkXnatTreeBrowserView::OnContextMenuCreateNewExperiment() { QModelIndex index = m_Controls.treeView->currentIndex(); QVariant variant = m_TreeModel->data(index, Qt::UserRole); if (variant.isValid()) { QmitkXnatCreateObjectDialog* dialog = new QmitkXnatCreateObjectDialog(QmitkXnatCreateObjectDialog::SpecificType::EXPERIMENT); if (dialog->exec() == QDialog::Accepted) { + ctkXnatSubject* subject = dynamic_cast(variant.value()); ctkXnatExperiment* experiment = dynamic_cast(dialog->GetXnatObject()); - experiment->setParent(dynamic_cast(variant.value())); + experiment->setParent(subject); + experiment->setId(experiment->label()); + experiment->setProperty("project", QString(subject->parent()->property("ID"))); + experiment->setProperty("xsiType", QString("xnat:crSessionData")); experiment->save(); + + // Get xnat session from micro service + ctkXnatSession* session = mitk::org_mitk_gui_qt_xnatinterface_Activator::GetXnatModuleContext()->GetService( + mitk::org_mitk_gui_qt_xnatinterface_Activator::GetXnatModuleContext()->GetServiceReference()); + + // Update View + m_TreeModel->removeDataModel(session->dataModel()); + UpdateSession(session); } } }