diff --git a/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsView.cpp b/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsView.cpp
index 9d90a7ad54..67d25650d7 100644
--- a/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsView.cpp
+++ b/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsView.cpp
@@ -1,508 +1,549 @@
/*===================================================================
The Medical Imaging Interaction Toolkit (MITK)
Copyright (c) German Cancer Research Center,
Division of Medical and Biological Informatics.
All rights reserved.
This software is distributed WITHOUT ANY WARRANTY; without
even the implied warranty of MERCHANTABILITY or FITNESS FOR
A PARTICULAR PURPOSE.
See LICENSE.txt or http://www.mitk.org for details.
===================================================================*/
#include "QmitkImageStatisticsView.h"
#include <utility>
// berry includes
#include <berryIQtStyleManager.h>
#include <berryWorkbenchPlugin.h>
#include <QmitkChartWidget.h>
#include <mitkImageStatisticsContainerNodeHelper.h>
#include <mitkImageStatisticsPredicateHelper.h>
#include <mitkIntensityProfile.h>
#include <mitkNodePredicateAnd.h>
#include <mitkNodePredicateGeometry.h>
#include <mitkNodePredicateOr.h>
#include <mitkSliceNavigationController.h>
#include <mitkStatisticsToImageRelationRule.h>
#include <mitkStatisticsToMaskRelationRule.h>
#include <mitkStatusBar.h>
+#include <mitkImageTimeSelector.h>
#include "mitkImageStatisticsContainerManager.h"
#include <mitkPlanarFigureInteractor.h>
const std::string QmitkImageStatisticsView::VIEW_ID = "org.mitk.views.imagestatistics";
QmitkImageStatisticsView::QmitkImageStatisticsView(QObject * /*parent*/, const char * /*name*/)
{
this->m_CalculationThread = new QmitkImageStatisticsCalculationJob();
}
QmitkImageStatisticsView::~QmitkImageStatisticsView()
{
if (m_selectedPlanarFigure)
m_selectedPlanarFigure->RemoveObserver(m_PlanarFigureObserverTag);
}
void QmitkImageStatisticsView::CreateQtPartControl(QWidget *parent)
{
m_Controls.setupUi(parent);
m_Controls.widget_histogram->SetTheme(this->GetColorTheme());
m_Controls.widget_intensityProfile->SetTheme(this->GetColorTheme());
m_Controls.groupBox_histogram->setVisible(true);
m_Controls.groupBox_intensityProfile->setVisible(false);
m_Controls.label_currentlyComputingStatistics->setVisible(false);
m_Controls.sliderWidget_histogram->setPrefix("Time: ");
m_Controls.sliderWidget_histogram->setDecimals(0);
m_Controls.sliderWidget_histogram->setVisible(false);
+ m_Controls.sliderWidget_intensityProfile->setPrefix("Time: ");
+ m_Controls.sliderWidget_intensityProfile->setDecimals(0);
+ m_Controls.sliderWidget_intensityProfile->setVisible(false);
ResetGUI();
PrepareDataStorageComboBoxes();
m_Controls.widget_statistics->SetDataStorage(this->GetDataStorage());
CreateConnections();
}
void QmitkImageStatisticsView::CreateConnections()
{
connect(this->m_CalculationThread,
&QmitkImageStatisticsCalculationJob::finished,
this,
&QmitkImageStatisticsView::OnStatisticsCalculationEnds,
Qt::QueuedConnection);
connect(this->m_Controls.checkBox_ignoreZero,
&QCheckBox::stateChanged,
this,
&QmitkImageStatisticsView::OnCheckBoxIgnoreZeroStateChanged);
connect(this->m_Controls.sliderWidget_histogram,
&ctkSliderWidget::valueChanged,
this,
&QmitkImageStatisticsView::OnSliderWidgetHistogramChanged);
+ connect(this->m_Controls.sliderWidget_intensityProfile,
+ &ctkSliderWidget::valueChanged,
+ this,
+ &QmitkImageStatisticsView::OnSliderWidgetIntensityProfileChanged);
connect(this->m_Controls.imageSelector,
static_cast<void (QComboBox::*)(int)>(&QComboBox::currentIndexChanged),
this,
&QmitkImageStatisticsView::OnImageSelectorChanged);
connect(this->m_Controls.maskImageSelector,
static_cast<void (QComboBox::*)(int)>(&QComboBox::currentIndexChanged),
this,
&QmitkImageStatisticsView::OnMaskSelectorChanged);
}
void QmitkImageStatisticsView::OnCheckBoxIgnoreZeroStateChanged(int state)
{
m_ForceRecompute = true;
if (state != Qt::Unchecked)
{
this->m_CalculationThread->SetIgnoreZeroValueVoxel(true);
}
else
{
this->m_CalculationThread->SetIgnoreZeroValueVoxel(false);
}
CalculateOrGetStatistics();
}
void QmitkImageStatisticsView::OnSliderWidgetHistogramChanged(double value)
{
unsigned int timeStep = static_cast<unsigned int>(value);
auto mask = m_selectedMaskNode ? m_selectedMaskNode->GetData() : nullptr;
auto imageStatistics = mitk::ImageStatisticsContainerManager::GetImageStatistics(
this->GetDataStorage(), m_selectedImageNode->GetData(), mask);
HistogramType::ConstPointer histogram = imageStatistics->GetStatisticsForTimeStep(timeStep).m_Histogram;
if (histogram.IsNotNull() && this->m_CalculationThread->GetStatisticsUpdateSuccessFlag())
{
this->FillHistogramWidget({histogram}, {m_selectedImageNode->GetName()});
}
}
+void QmitkImageStatisticsView::OnSliderWidgetIntensityProfileChanged(double value)
+{
+ //intensity profile is always computed on request, not stored as node in DataStorage
+ auto image = dynamic_cast<mitk::Image*>(m_selectedImageNode->GetData());
+ auto planarFigure = dynamic_cast<mitk::PlanarFigure*>(m_selectedMaskNode->GetData());
+
+ if (image && planarFigure && this->m_CalculationThread->GetStatisticsUpdateSuccessFlag())
+ {
+ this->ComputeAndDisplayIntensityProfile(image, planarFigure);
+ }
+}
+
void QmitkImageStatisticsView::PartClosed(const berry::IWorkbenchPartReference::Pointer &) {}
void QmitkImageStatisticsView::FillHistogramWidget(const std::vector<HistogramType::ConstPointer> &histogram,
- const std::vector<std::string> &dataLabels)
+ const std::vector<std::string> &dataLabels)
{
m_Controls.groupBox_histogram->setVisible(true);
m_Controls.widget_histogram->SetTheme(this->GetColorTheme());
m_Controls.widget_histogram->Reset();
m_Controls.widget_histogram->SetHistogram(histogram.front(), dataLabels.front());
connect(m_Controls.widget_histogram,
&QmitkHistogramVisualizationWidget::RequestHistogramUpdate,
this,
&QmitkImageStatisticsView::OnRequestHistogramUpdate);
}
QmitkChartWidget::ColorTheme QmitkImageStatisticsView::GetColorTheme() const
{
ctkPluginContext *context = berry::WorkbenchPlugin::GetDefault()->GetPluginContext();
ctkServiceReference styleManagerRef = context->getServiceReference<berry::IQtStyleManager>();
if (styleManagerRef)
{
auto styleManager = context->getService<berry::IQtStyleManager>(styleManagerRef);
if (styleManager->GetStyle().name == "Dark")
{
return QmitkChartWidget::ColorTheme::darkstyle;
}
else
{
return QmitkChartWidget::ColorTheme::lightstyle;
}
}
return QmitkChartWidget::ColorTheme::darkstyle;
}
void QmitkImageStatisticsView::OnImageSelectorChanged()
{
auto selectedImageNode = m_Controls.imageSelector->GetSelectedNode();
if (selectedImageNode != m_selectedImageNode)
{
m_selectedImageNode = selectedImageNode;
if (m_selectedImageNode.IsNotNull())
{
ResetGUIDefault();
auto isPlanarFigurePredicate = mitk::GetImageStatisticsPlanarFigurePredicate();
auto isMaskPredicate = mitk::GetImageStatisticsMaskPredicate();
auto hasSameGeometry = mitk::NodePredicateGeometry::New(m_selectedImageNode->GetData()->GetGeometry());
hasSameGeometry->SetCheckPrecision(1e-10);
auto isMaskWithGeometryPredicate = mitk::NodePredicateAnd::New(isMaskPredicate, hasSameGeometry);
auto isMaskOrPlanarFigureWithGeometryPredicate =
mitk::NodePredicateOr::New(isPlanarFigurePredicate, isMaskWithGeometryPredicate);
// prevent triggering of computation as the predicate triggers a signalChanged event
m_Controls.maskImageSelector->disconnect();
m_Controls.maskImageSelector->SetPredicate(isMaskOrPlanarFigureWithGeometryPredicate);
// reset mask to <none>
m_Controls.maskImageSelector->SetZeroEntryText("<none>");
m_Controls.checkBox_ignoreZero->setEnabled(true);
m_selectedMaskNode = nullptr;
m_Controls.widget_statistics->SetMaskNodes({});
CalculateOrGetStatistics();
m_Controls.widget_statistics->SetImageNodes({m_selectedImageNode.GetPointer()});
connect(this->m_Controls.maskImageSelector,
static_cast<void (QComboBox::*)(int)>(&QComboBox::currentIndexChanged),
this,
&QmitkImageStatisticsView::OnMaskSelectorChanged);
}
else
{
m_Controls.widget_statistics->SetImageNodes({});
m_Controls.widget_statistics->SetMaskNodes({});
- m_Controls.widget_statistics->Reset();
+ m_Controls.widget_statistics->Reset();
m_Controls.widget_histogram->Reset();
ResetGUI();
}
}
}
void QmitkImageStatisticsView::OnMaskSelectorChanged()
{
auto selectedMaskNode = m_Controls.maskImageSelector->GetSelectedNode();
if (selectedMaskNode != m_selectedMaskNode)
{
m_selectedMaskNode = selectedMaskNode;
if (m_selectedMaskNode.IsNotNull())
{
m_Controls.widget_statistics->SetMaskNodes({m_selectedMaskNode.GetPointer()});
}
else
{
m_Controls.widget_statistics->SetMaskNodes({});
}
CalculateOrGetStatistics();
}
}
void QmitkImageStatisticsView::CalculateOrGetStatistics()
{
if (this->m_selectedPlanarFigure)
{
this->m_selectedPlanarFigure->RemoveObserver(this->m_PlanarFigureObserverTag);
this->m_selectedPlanarFigure = nullptr;
}
m_Controls.groupBox_intensityProfile->setVisible(false);
m_Controls.widget_statistics->setEnabled(m_selectedImageNode.IsNotNull());
if (m_selectedImageNode != nullptr)
{
auto image = dynamic_cast<mitk::Image *>(m_selectedImageNode->GetData());
mitk::Image::Pointer mask = nullptr;
mitk::PlanarFigure::Pointer maskPlanarFigure = nullptr;
if (image->GetDimension() == 4)
{
m_Controls.sliderWidget_histogram->setVisible(true);
unsigned int maxTimestep = image->GetTimeSteps();
m_Controls.sliderWidget_histogram->setMaximum(maxTimestep - 1);
}
else
{
m_Controls.sliderWidget_histogram->setVisible(false);
}
if (m_selectedMaskNode != nullptr)
{
mask = dynamic_cast<mitk::Image *>(m_selectedMaskNode->GetData());
if (mask == nullptr)
{
maskPlanarFigure = dynamic_cast<mitk::PlanarFigure *>(m_selectedMaskNode->GetData());
}
}
mitk::ImageStatisticsContainer::ConstPointer imageStatistics;
if (mask)
{
imageStatistics =
mitk::ImageStatisticsContainerManager::GetImageStatistics(this->GetDataStorage(), image, mask.GetPointer());
}
else if (maskPlanarFigure)
{
m_selectedPlanarFigure = maskPlanarFigure;
ITKCommandType::Pointer changeListener = ITKCommandType::New();
changeListener->SetCallbackFunction(this, &QmitkImageStatisticsView::CalculateOrGetStatistics);
this->m_PlanarFigureObserverTag =
m_selectedPlanarFigure->AddObserver(mitk::EndInteractionPlanarFigureEvent(), changeListener);
if (!maskPlanarFigure->IsClosed())
{
ComputeAndDisplayIntensityProfile(image, maskPlanarFigure);
}
imageStatistics = mitk::ImageStatisticsContainerManager::GetImageStatistics(
this->GetDataStorage(), image, maskPlanarFigure.GetPointer());
}
else
{
imageStatistics = mitk::ImageStatisticsContainerManager::GetImageStatistics(this->GetDataStorage(), image);
}
-
-
bool imageStatisticsOlderThanInputs = false;
if (imageStatistics &&
(imageStatistics->GetMTime() < image->GetMTime() || (mask && imageStatistics->GetMTime() < mask->GetMTime()) ||
(maskPlanarFigure && imageStatistics->GetMTime() < maskPlanarFigure->GetMTime())))
{
imageStatisticsOlderThanInputs = true;
}
if (imageStatistics)
{
// triggers recomputation when switched between images and the newest one has not 100 bins (default)
auto calculatedBins = imageStatistics->GetStatisticsForTimeStep(0).m_Histogram.GetPointer()->Size();
- if (calculatedBins != 100)
+ if (calculatedBins != 100)
{
OnRequestHistogramUpdate(m_Controls.widget_histogram->GetBins());
}
}
- //statistics need to be computed
- if (!imageStatistics || imageStatisticsOlderThanInputs || m_ForceRecompute) {
+ // statistics need to be computed
+ if (!imageStatistics || imageStatisticsOlderThanInputs || m_ForceRecompute)
+ {
CalculateStatistics(image, mask.GetPointer(), maskPlanarFigure.GetPointer());
}
// statistics already computed
else
{
// Not an open planar figure: show histogram (intensity profile already shown)
if (!(maskPlanarFigure && !maskPlanarFigure->IsClosed()))
{
if (imageStatistics->TimeStepExists(0))
{
auto histogram = imageStatistics->GetStatisticsForTimeStep(0).m_Histogram.GetPointer();
std::string imageNodeName = m_selectedImageNode->GetName();
this->FillHistogramWidget({histogram}, {imageNodeName});
}
}
}
}
else
{
ResetGUI();
}
m_ForceRecompute = false;
}
void QmitkImageStatisticsView::ComputeAndDisplayIntensityProfile(mitk::Image *image,
- mitk::PlanarFigure::Pointer maskPlanarFigure)
+ mitk::PlanarFigure::Pointer maskPlanarFigure)
{
- auto intensityProfile = mitk::ComputeIntensityProfile(image, maskPlanarFigure);
+ mitk::Image::Pointer inputImage;
+ if (image->GetDimension() == 4)
+ {
+ m_Controls.sliderWidget_intensityProfile->setVisible(true);
+ unsigned int maxTimestep = image->GetTimeSteps();
+ m_Controls.sliderWidget_intensityProfile->setMaximum(maxTimestep - 1);
+ //Intensity profile can only be calculated on 3D, so extract if 4D
+ mitk::ImageTimeSelector::Pointer timeSelector = mitk::ImageTimeSelector::New();
+ int currentTimestep = static_cast<int>(m_Controls.sliderWidget_intensityProfile->value());
+ timeSelector->SetInput(image);
+ timeSelector->SetTimeNr(currentTimestep);
+ timeSelector->Update();
+
+ inputImage = timeSelector->GetOutput();
+ }
+ else
+ {
+ m_Controls.sliderWidget_intensityProfile->setVisible(false);
+ inputImage = image;
+ }
+
+ auto intensityProfile = mitk::ComputeIntensityProfile(inputImage, maskPlanarFigure);
// Don't show histogram for intensity profiles
m_Controls.groupBox_histogram->setVisible(false);
m_Controls.groupBox_intensityProfile->setVisible(true);
m_Controls.widget_intensityProfile->Reset();
m_Controls.widget_intensityProfile->SetIntensityProfile(intensityProfile.GetPointer(),
"Intensity Profile of " + m_selectedImageNode->GetName());
}
void QmitkImageStatisticsView::ResetGUI()
{
m_Controls.widget_statistics->Reset();
- m_Controls.widget_statistics->setEnabled(false); m_Controls.widget_histogram->Reset();
+ m_Controls.widget_statistics->setEnabled(false);
+ m_Controls.widget_histogram->Reset();
m_Controls.widget_histogram->setEnabled(false);
m_Controls.checkBox_ignoreZero->setEnabled(false);
}
void QmitkImageStatisticsView::ResetGUIDefault()
{
MITK_INFO << "reset GUI";
m_Controls.widget_histogram->ResetDefault();
m_Controls.checkBox_ignoreZero->setChecked(false);
}
void QmitkImageStatisticsView::OnStatisticsCalculationEnds()
{
mitk::StatusBar::GetInstance()->Clear();
if (this->m_CalculationThread->GetStatisticsUpdateSuccessFlag())
{
auto statistic = m_CalculationThread->GetStatisticsData();
auto image = m_CalculationThread->GetStatisticsImage();
mitk::BaseData::ConstPointer mask = nullptr;
auto statisticNonConst = statistic->Clone();
auto imageRule = mitk::StatisticsToImageRelationRule::New();
imageRule->Connect(statisticNonConst.GetPointer(), image);
if (m_CalculationThread->GetMaskImage())
{
auto maskRule = mitk::StatisticsToMaskRelationRule::New();
mask = m_CalculationThread->GetMaskImage();
maskRule->Connect(statisticNonConst.GetPointer(), mask);
}
else if (m_CalculationThread->GetPlanarFigure())
{
auto planarFigureRule = mitk::StatisticsToMaskRelationRule::New();
mask = m_CalculationThread->GetPlanarFigure();
planarFigureRule->Connect(statisticNonConst.GetPointer(), mask);
}
- auto imageStatistics = mitk::ImageStatisticsContainerManager::GetImageStatistics(
- this->GetDataStorage(), image, mask);
+ auto imageStatistics =
+ mitk::ImageStatisticsContainerManager::GetImageStatistics(this->GetDataStorage(), image, mask);
- //if statistics base data already exist: add to existing node
+ // if statistics base data already exist: add to existing node
if (imageStatistics)
{
auto allDataNodes = this->GetDataStorage()->GetAll()->CastToSTLConstContainer();
for (auto node : allDataNodes)
{
auto nodeData = node->GetData();
- if (nodeData && nodeData->GetUID() ==imageStatistics->GetUID())
+ if (nodeData && nodeData->GetUID() == imageStatistics->GetUID())
{
node->SetData(statisticNonConst);
}
}
}
- //statistics base data does not exist: add new node
+ // statistics base data does not exist: add new node
else
{
auto statisticsNodeName = m_selectedImageNode->GetName();
if (m_selectedMaskNode)
{
statisticsNodeName += "_" + m_selectedMaskNode->GetName();
}
statisticsNodeName += "_statistics";
auto statisticsNode = mitk::CreateImageStatisticsNode(statisticNonConst, statisticsNodeName);
this->GetDataStorage()->Add(statisticsNode);
}
if (!m_selectedPlanarFigure || m_selectedPlanarFigure->IsClosed())
{
this->FillHistogramWidget({m_CalculationThread->GetTimeStepHistogram()}, {m_selectedImageNode->GetName()});
}
}
else
{
mitk::StatusBar::GetInstance()->DisplayErrorText(m_CalculationThread->GetLastErrorMessage().c_str());
m_Controls.widget_histogram->setEnabled(false);
}
m_Controls.label_currentlyComputingStatistics->setVisible(false);
}
void QmitkImageStatisticsView::OnRequestHistogramUpdate(unsigned int nBins)
{
m_CalculationThread->SetHistogramNBins(nBins);
m_CalculationThread->start();
}
void QmitkImageStatisticsView::CalculateStatistics(mitk::Image::ConstPointer image,
- mitk::Image::ConstPointer mask,
- mitk::PlanarFigure::ConstPointer maskPlanarFigure)
+ mitk::Image::ConstPointer mask,
+ mitk::PlanarFigure::ConstPointer maskPlanarFigure)
{
this->m_StatisticsUpdatePending = true;
this->m_CalculationThread->Initialize(image, mask, maskPlanarFigure);
try
{
// Compute statistics
this->m_CalculationThread->start();
m_Controls.label_currentlyComputingStatistics->setVisible(true);
}
catch (const mitk::Exception &e)
{
mitk::StatusBar::GetInstance()->DisplayErrorText(e.GetDescription());
this->m_StatisticsUpdatePending = false;
m_Controls.label_currentlyComputingStatistics->setVisible(false);
}
catch (const std::runtime_error &e)
{
mitk::StatusBar::GetInstance()->DisplayErrorText(e.what());
this->m_StatisticsUpdatePending = false;
m_Controls.label_currentlyComputingStatistics->setVisible(false);
}
catch (const std::exception &e)
{
mitk::StatusBar::GetInstance()->DisplayErrorText(e.what());
this->m_StatisticsUpdatePending = false;
m_Controls.label_currentlyComputingStatistics->setVisible(false);
}
}
void QmitkImageStatisticsView::OnSelectionChanged(berry::IWorkbenchPart::Pointer part,
- const QList<mitk::DataNode::Pointer> &nodes)
+ const QList<mitk::DataNode::Pointer> &nodes)
{
Q_UNUSED(part);
Q_UNUSED(nodes);
}
void QmitkImageStatisticsView::PrepareDataStorageComboBoxes()
{
auto isPlanarFigurePredicate = mitk::GetImageStatisticsPlanarFigurePredicate();
auto isMaskPredicate = mitk::GetImageStatisticsMaskPredicate();
auto isImagePredicate = mitk::GetImageStatisticsImagePredicate();
auto isMaskOrPlanarFigurePredicate = mitk::NodePredicateOr::New(isPlanarFigurePredicate, isMaskPredicate);
m_Controls.imageSelector->SetDataStorage(GetDataStorage());
m_Controls.imageSelector->SetPredicate(isImagePredicate);
m_Controls.maskImageSelector->SetDataStorage(GetDataStorage());
m_Controls.maskImageSelector->SetPredicate(isMaskOrPlanarFigurePredicate);
m_Controls.maskImageSelector->SetZeroEntryText("<none>");
}
void QmitkImageStatisticsView::Activated() {}
void QmitkImageStatisticsView::Deactivated() {}
void QmitkImageStatisticsView::Visible()
{
connect(this->m_Controls.imageSelector,
static_cast<void (QComboBox::*)(int)>(&QComboBox::currentIndexChanged),
this,
&QmitkImageStatisticsView::OnImageSelectorChanged);
connect(this->m_Controls.maskImageSelector,
static_cast<void (QComboBox::*)(int)>(&QComboBox::currentIndexChanged),
this,
&QmitkImageStatisticsView::OnMaskSelectorChanged);
OnImageSelectorChanged();
OnMaskSelectorChanged();
}
void QmitkImageStatisticsView::Hidden()
{
m_Controls.imageSelector->disconnect();
m_Controls.maskImageSelector->disconnect();
}
void QmitkImageStatisticsView::SetFocus() {}
diff --git a/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsView.h b/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsView.h
index 6390f25e7f..be9bc58490 100644
--- a/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsView.h
+++ b/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsView.h
@@ -1,112 +1,113 @@
/*===================================================================
The Medical Imaging Interaction Toolkit (MITK)
Copyright (c) German Cancer Research Center,
Division of Medical and Biological Informatics.
All rights reserved.
This software is distributed WITHOUT ANY WARRANTY; without
even the implied warranty of MERCHANTABILITY or FITNESS FOR
A PARTICULAR PURPOSE.
See LICENSE.txt or http://www.mitk.org for details.
===================================================================*/
#ifndef QmitkImageStatisticsView_H__INCLUDED
#define QmitkImageStatisticsView_H__INCLUDED
#include "ui_QmitkImageStatisticsViewControls.h"
// Qmitk includes
#include <QmitkAbstractView.h>
#include <QmitkImageStatisticsCalculationJob.h>
#include <mitkImageStatisticsContainer.h>
#include <mitkILifecycleAwarePart.h>
#include <berryIPartListener.h>
#include <mitkPropertyRelations.h>
/*!
\brief QmitkImageStatisticsView is a bundle that allows statistics calculation from images. Three modes
are supported: 1. Statistics of one image, 2. Statistics of an image and a segmentation, 3. Statistics
of an image and a Planar Figure. The statistics calculation is realized in a separate thread to keep the
gui accessible during calculation.
\ingroup Plugins/org.mitk.gui.qt.measurementtoolbox
*/
class QmitkImageStatisticsView : public QmitkAbstractView, public mitk::ILifecycleAwarePart, public berry::IPartListener
{
Q_OBJECT
public:
using HistogramType = mitk::ImageStatisticsContainer::HistogramType;
/*!
\brief default constructor */
QmitkImageStatisticsView(QObject *parent = nullptr, const char *name = nullptr);
/*!
\brief default destructor */
virtual ~QmitkImageStatisticsView();
/*!
\brief method for creating the widget containing the application controls, like sliders, buttons etc. */
virtual void CreateQtPartControl(QWidget *parent) override;
/*!
\brief method for creating the connections of main and control widget */
virtual void CreateConnections();
/*!
\brief Is called from the selection mechanism once the data manager selection has changed*/
void OnSelectionChanged(berry::IWorkbenchPart::Pointer part, const QList<mitk::DataNode::Pointer> &selectedNodes) override;
void PrepareDataStorageComboBoxes();
static const std::string VIEW_ID;
void FillHistogramWidget(const std::vector<HistogramType::ConstPointer>& histogram, const std::vector<std::string>& dataLabels);
QmitkChartWidget::ColorTheme GetColorTheme() const;
protected:
virtual void Activated() override;
virtual void Deactivated() override;
virtual void Visible() override;
virtual void Hidden() override;
virtual void SetFocus() override;
/** \brief Is called right before the view closes (before the destructor) */
virtual void PartClosed(const berry::IWorkbenchPartReference::Pointer&) override;
/** \brief Required for berry::IPartListener */
virtual Events::Types GetPartEventTypes() const override { return Events::CLOSED; }
void OnImageSelectorChanged();
void OnMaskSelectorChanged();
void CalculateOrGetStatistics();
void ComputeAndDisplayIntensityProfile(mitk::Image * image, mitk::PlanarFigure::Pointer maskPlanarFigure);
void ResetGUI();
void ResetGUIDefault();
void OnStatisticsCalculationEnds();
void OnRequestHistogramUpdate(unsigned int nBins);
void OnCheckBoxIgnoreZeroStateChanged(int state);
void OnSliderWidgetHistogramChanged(double value);
+ void OnSliderWidgetIntensityProfileChanged(double value);
void CalculateStatistics(mitk::Image::ConstPointer image, mitk::Image::ConstPointer mask=nullptr, mitk::PlanarFigure::ConstPointer maskPlanarFigure = nullptr);
// member variables
Ui::QmitkImageStatisticsViewControls m_Controls;
private:
typedef itk::SimpleMemberCommand< QmitkImageStatisticsView > ITKCommandType;
QmitkImageStatisticsCalculationJob * m_CalculationThread = nullptr;
bool m_StatisticsUpdatePending=false;
mitk::DataNode::ConstPointer m_selectedImageNode = nullptr, m_selectedMaskNode = nullptr;
mitk::PlanarFigure::Pointer m_selectedPlanarFigure=nullptr;
long m_PlanarFigureObserverTag;
bool m_ForceRecompute = false;
};
#endif // QmitkImageStatisticsView_H__INCLUDED
diff --git a/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsViewControls.ui b/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsViewControls.ui
index 82459f65dd..ca07213aba 100644
--- a/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsViewControls.ui
+++ b/Plugins/org.mitk.gui.qt.measurementtoolbox/src/internal/QmitkImageStatisticsViewControls.ui
@@ -1,469 +1,472 @@
<?xml version="1.0" encoding="UTF-8"?>
<ui version="4.0">
<class>QmitkImageStatisticsViewControls</class>
<widget class="QWidget" name="QmitkImageStatisticsViewControls">
<property name="enabled">
<bool>true</bool>
</property>
<property name="geometry">
<rect>
<x>0</x>
<y>0</y>
<width>419</width>
<height>1016</height>
</rect>
</property>
<property name="windowTitle">
<string>Form</string>
</property>
<layout class="QVBoxLayout" name="verticalLayout_4">
<item>
<layout class="QGridLayout" name="gridLayout_4" columnstretch="0,0">
<property name="sizeConstraint">
<enum>QLayout::SetMinimumSize</enum>
</property>
<property name="spacing">
<number>4</number>
</property>
<item row="0" column="1">
<widget class="QmitkDataStorageComboBox" name="imageSelector">
<property name="sizePolicy">
<sizepolicy hsizetype="Minimum" vsizetype="Fixed">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="autoFillBackground">
<bool>false</bool>
</property>
</widget>
</item>
<item row="3" column="1">
<widget class="QLabel" name="label_currentlyComputingStatistics">
<property name="palette">
<palette>
<active>
<colorrole role="WindowText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>255</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
<colorrole role="Text">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>0</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
</active>
<inactive>
<colorrole role="WindowText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>255</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
<colorrole role="Text">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>0</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
</inactive>
<disabled>
<colorrole role="WindowText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>120</red>
<green>120</green>
<blue>120</blue>
</color>
</brush>
</colorrole>
<colorrole role="Text">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>120</red>
<green>120</green>
<blue>120</blue>
</color>
</brush>
</colorrole>
</disabled>
</palette>
</property>
<property name="text">
<string>Calculating statistics...</string>
</property>
</widget>
</item>
<item row="1" column="0">
<widget class="QLabel" name="label_maskImage">
<property name="sizePolicy">
<sizepolicy hsizetype="Maximum" vsizetype="Preferred">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="palette">
<palette>
<active>
<colorrole role="WindowText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>0</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
</active>
<inactive>
<colorrole role="WindowText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>0</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
</inactive>
<disabled>
<colorrole role="WindowText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>120</red>
<green>120</green>
<blue>120</blue>
</color>
</brush>
</colorrole>
</disabled>
</palette>
</property>
<property name="text">
<string>Mask image:</string>
</property>
</widget>
</item>
<item row="0" column="0">
<widget class="QLabel" name="label_calibrationImage">
<property name="sizePolicy">
<sizepolicy hsizetype="Maximum" vsizetype="Preferred">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="palette">
<palette>
<active>
<colorrole role="WindowText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>0</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
</active>
<inactive>
<colorrole role="WindowText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>0</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
</inactive>
<disabled>
<colorrole role="WindowText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>120</red>
<green>120</green>
<blue>120</blue>
</color>
</brush>
</colorrole>
</disabled>
</palette>
</property>
<property name="text">
<string>Image:</string>
</property>
</widget>
</item>
<item row="1" column="1">
<widget class="QmitkDataStorageComboBoxWithSelectNone" name="maskImageSelector">
<property name="sizePolicy">
<sizepolicy hsizetype="Minimum" vsizetype="Fixed">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="autoFillBackground">
<bool>false</bool>
</property>
</widget>
</item>
<item row="2" column="1">
<widget class="QCheckBox" name="checkBox_ignoreZero">
<property name="text">
<string>Ignore zero-valued voxels</string>
</property>
</widget>
</item>
</layout>
</item>
<item>
<widget class="QGroupBox" name="groupBox_statistics">
<property name="minimumSize">
<size>
<width>0</width>
<height>200</height>
</size>
</property>
<property name="title">
<string>Statistics</string>
</property>
<layout class="QVBoxLayout" name="verticalLayout">
<property name="leftMargin">
<number>3</number>
</property>
<property name="topMargin">
<number>3</number>
</property>
<property name="rightMargin">
<number>3</number>
</property>
<property name="bottomMargin">
<number>3</number>
</property>
<item>
<widget class="QmitkImageStatisticsWidget" name="widget_statistics" native="true">
<property name="palette">
<palette>
<active>
<colorrole role="WindowText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>255</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
<colorrole role="Text">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>255</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
<colorrole role="ButtonText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>255</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
</active>
<inactive>
<colorrole role="WindowText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>255</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
<colorrole role="Text">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>255</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
<colorrole role="ButtonText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>255</red>
<green>0</green>
<blue>0</blue>
</color>
</brush>
</colorrole>
</inactive>
<disabled>
<colorrole role="WindowText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>120</red>
<green>120</green>
<blue>120</blue>
</color>
</brush>
</colorrole>
<colorrole role="Text">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>120</red>
<green>120</green>
<blue>120</blue>
</color>
</brush>
</colorrole>
<colorrole role="ButtonText">
<brush brushstyle="SolidPattern">
<color alpha="255">
<red>120</red>
<green>120</green>
<blue>120</blue>
</color>
</brush>
</colorrole>
</disabled>
</palette>
</property>
</widget>
</item>
</layout>
</widget>
</item>
<item>
<widget class="QGroupBox" name="groupBox_histogram">
<property name="minimumSize">
<size>
<width>0</width>
<height>200</height>
</size>
</property>
<property name="title">
<string>Histogram</string>
</property>
<layout class="QVBoxLayout" name="verticalLayout_6">
<item>
<widget class="ctkSliderWidget" name="sliderWidget_histogram" native="true"/>
</item>
<item>
<layout class="QVBoxLayout" name="verticalLayout_5">
<item>
<layout class="QVBoxLayout" name="verticalLayout_2">
<item>
<widget class="QmitkHistogramVisualizationWidget" name="widget_histogram" native="true"/>
</item>
<item>
<spacer name="verticalSpacer_3">
<property name="orientation">
<enum>Qt::Vertical</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>20</width>
<height>40</height>
</size>
</property>
</spacer>
</item>
</layout>
</item>
</layout>
</item>
</layout>
</widget>
</item>
<item>
<widget class="QGroupBox" name="groupBox_intensityProfile">
<property name="minimumSize">
<size>
<width>0</width>
<height>200</height>
</size>
</property>
<property name="title">
<string>Intensity Profile</string>
</property>
<layout class="QVBoxLayout" name="verticalLayout_3">
+ <item>
+ <widget class="ctkSliderWidget" name="sliderWidget_intensityProfile" native="true"/>
+ </item>
<item>
<widget class="QmitkIntensityProfileVisualizationWidget" name="widget_intensityProfile" native="true"/>
</item>
</layout>
</widget>
</item>
<item>
<spacer name="verticalSpacer">
<property name="orientation">
<enum>Qt::Vertical</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>20</width>
<height>40</height>
</size>
</property>
</spacer>
</item>
</layout>
</widget>
<customwidgets>
<customwidget>
<class>QmitkImageStatisticsWidget</class>
<extends>QWidget</extends>
<header location="global">QmitkImageStatisticsWidget.h</header>
<container>1</container>
</customwidget>
<customwidget>
<class>QmitkDataStorageComboBox</class>
<extends>QComboBox</extends>
<header location="global">QmitkDataStorageComboBox.h</header>
</customwidget>
<customwidget>
<class>QmitkHistogramVisualizationWidget</class>
<extends>QWidget</extends>
<header location="global">QmitkHistogramVisualizationWidget.h</header>
<container>1</container>
</customwidget>
<customwidget>
<class>QmitkDataStorageComboBoxWithSelectNone</class>
<extends>QComboBox</extends>
<header location="global">QmitkDataStorageComboBoxWithSelectNone.h</header>
</customwidget>
<customwidget>
<class>QmitkIntensityProfileVisualizationWidget</class>
<extends>QWidget</extends>
<header location="global">QmitkIntensityProfileVisualizationWidget.h</header>
<container>1</container>
</customwidget>
<customwidget>
<class>ctkSliderWidget</class>
<extends>QWidget</extends>
<header location="global">ctkSliderWidget.h</header>
<container>1</container>
</customwidget>
</customwidgets>
<resources/>
<connections/>
</ui>