diff --git a/Modules/ImageStatistics/mitkImageStatisticsContainer.h b/Modules/ImageStatistics/mitkImageStatisticsContainer.h index 0b34be1ddf..591928490b 100644 --- a/Modules/ImageStatistics/mitkImageStatisticsContainer.h +++ b/Modules/ImageStatistics/mitkImageStatisticsContainer.h @@ -1,163 +1,163 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #ifndef MITKIMAGESTATISTICSCONTAINER #define MITKIMAGESTATISTICSCONTAINER #include #include #include #include #include namespace mitk { /** @brief Container class for storing a StatisticsObject for each timestep. Stored statistics are: - for the defined statistics, see GetAllStatisticNames - Histogram of Pixel Values*/ class MITKIMAGESTATISTICS_EXPORT ImageStatisticsContainer : public mitk::BaseData { public: mitkClassMacro(ImageStatisticsContainer, mitk::BaseData) itkFactorylessNewMacro(Self) itkCloneMacro(Self) using HistogramType = itk::Statistics::Histogram; using RealType = double; using LabelIndex = unsigned int; using IndexType = vnl_vector; using VoxelCountType = unsigned long; using StatisticsVariantType = boost::variant; using StatisticsMapType = std::map < std::string, StatisticsVariantType>; using StatisticsKeyType = std::string; virtual void SetRequestedRegionToLargestPossibleRegion() override {}; virtual bool RequestedRegionIsOutsideOfTheBufferedRegion() override { return false; }; virtual bool VerifyRequestedRegion() override { return true; }; virtual void SetRequestedRegion(const itk::DataObject*) override {}; /** @brief Container class for storing the computed image statistics. @details The statistics are stored in a map with value as boost::variant. The type used to create the boost::variant is important as only this type can be recovered lateron. */ class MITKIMAGESTATISTICS_EXPORT StatisticsObject { public: StatisticsObject(); /** @brief Adds a statistic to the statistics object @details if already a statistic with that name is included, it is overwritten */ void AddStatistic(const std::string& key, StatisticsVariantType value); using StatisticNameVector = std::vector; /** @brief Returns the names of the default statistics @details The order is derived from the image statistics plugin. */ static const StatisticNameVector& GetDefaultStatisticNames(); /** @brief Returns the names of all custom statistics (defined at runtime and no default names). */ const StatisticNameVector& GetCustomStatisticNames() const; /** @brief Returns the names of all statistics (default and custom defined) Additional custom keys are added at the end in a sorted order. */ StatisticNameVector GetAllStatisticNames() const; bool HasStatistic(const std::string& name) const; /** @brief Converts the requested value to the defined type @param name defined string on creation (AddStatistic) @exception if no statistics with key name was found. */ template TType GetValueConverted(const std::string& name) const { auto value = GetValueNonConverted(name); return boost::get(value); }; /** @brief Returns the requested value @exception if no statistics with key name was found. */ StatisticsVariantType GetValueNonConverted(const std::string& name) const; void Reset(); HistogramType::ConstPointer m_Histogram=nullptr; private: StatisticsMapType m_Statistics; StatisticNameVector m_CustomNames; static const StatisticNameVector m_DefaultNames; }; - typedef std::map TimeStepMapType; + using TimeStepMapType = std::map; unsigned int GetNumberOfTimeSteps() const; /** @brief Deletes all stored values*/ void Reset(); /** @brief Returns the statisticObject for the given Timestep @pre timeStep must be valid */ const StatisticsObject& GetStatisticsForTimeStep(TimeStepType timeStep) const; /** @brief Sets the statisticObject for the given Timestep @pre timeStep must be valid */ void SetStatisticsForTimeStep(TimeStepType timeStep, StatisticsObject statistics); /** @brief Checks if the Time step exists @pre timeStep must be valid */ bool TimeStepExists(TimeStepType timeStep) const; protected: ImageStatisticsContainer(); virtual void PrintSelf(std::ostream &os, itk::Indent indent) const override; private: itk::LightObject::Pointer InternalClone() const override; void SetTimeStepMap(TimeStepMapType map); TimeStepMapType m_TimeStepMap; }; MITKIMAGESTATISTICS_EXPORT ImageStatisticsContainer::StatisticsObject::StatisticNameVector GetAllStatisticNames(const ImageStatisticsContainer* container); MITKIMAGESTATISTICS_EXPORT ImageStatisticsContainer::StatisticsObject::StatisticNameVector GetAllStatisticNames(std::vector containers); } #endif // MITKIMAGESTATISTICSCONTAINER