diff --git a/Documentation/CMakeLists.txt b/Documentation/CMakeLists.txt
index 9ea907bf5a..b64686269f 100644
--- a/Documentation/CMakeLists.txt
+++ b/Documentation/CMakeLists.txt
@@ -1,175 +1,174 @@
 # 
 # Variables:
 #  MITK_DOXYGEN_OUTPUT_DIR: doxygen output directory (optional)
 
 # Compile source code snippets
 #add_subdirectory(Snippets)
 
 find_package(Doxygen)
 
 if(DOXYGEN_FOUND)
 
 option(USE_DOT "Use dot program for generating graphical class diagrams with doxygen, if available" ON)
 option(MITK_DOXYGEN_BUILD_ALWAYS "Always build the MITK documentation when building the default target" OFF)
 option(MITK_DOXYGEN_GENERATE_QCH_FILES "Use doxygen to generate Qt compressed help files for MITK docs" OFF)
 mark_as_advanced(USE_DOT MITK_DOXYGEN_BUILD_ALWAYS MITK_DOXYGEN_GENERATE_QCH_FILES)
 
 set(HAVE_DOT "NO")
 if(DOXYGEN_DOT_EXECUTABLE AND USE_DOT)
   set(HAVE_DOT "YES")
 endif()
 
 set(MITK_DOXYGEN_OUTPUT_DIR ${PROJECT_BINARY_DIR}/Documentation/Doxygen CACHE PATH "Output directory for doxygen generated documentation." )
 set(MITK_DOXYGEN_TAGFILE_NAME ${MITK_DOXYGEN_OUTPUT_DIR}/MITK.tag CACHE INTERNAL "MITK Doxygen tag file")
 
 # This is relative to the working directory of the doxygen command
 set(MITK_DOXYGEN_STYLESHEET mitk_doxygen.css)
 configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${MITK_DOXYGEN_STYLESHEET}
                ${CMAKE_CURRENT_BINARY_DIR}/${MITK_DOXYGEN_STYLESHEET} @COPYONLY)
 
 # Create QCH files for MITK and external projects
 set(MITK_DOXYGEN_GENERATE_QHP "NO")
 if(MITK_DOXYGEN_GENERATE_QCH_FILES)
   
   find_program(QT_HELPGENERATOR_EXECUTABLE
     NAMES qhelpgenerator qhelpgenerator-qt4 qhelpgenerator4
     PATHS ${QT_BINARY_DIR}
     DOC "The location of the the Qt help generator executable"
     NO_DEFAULT_PATH
   )
   mark_as_advanced(QT_HELPGENERATOR_EXECUTABLE)
   
   if(NOT QT_HELPGENERATOR_EXECUTABLE)
     message(SEND_ERROR "The Qt help generator could not be found. Disabling qch generation")
   else()
     set(MITK_DOXYGEN_GENERATE_QHP "YES")
   endif()
 
   # The name of the generated MITK qch file, relative to the
   # Doxygen HTML output folder
   set(MITK_DOXYGEN_QCH_FILE "${MITK_BINARY_DIR}/MITK-${MITK_REVISION_ID}.qch")
 
   # Generating ITK and VTK docs it not done yet
   #option(MITK_DOXYGEN_GENERATE_VTK_QCH_FILE "Use doxygen to generate a Qt compressed help file for VTK docs" OFF)
   #option(MITK_DOXYGEN_GENERATE_ITK_QCH_FILE "Use doxygen to generate a Qt compressed help file for ITK docs" OFF)
   #mark_as_advanced(MITK_DOXYGEN_GENERATE_VTK_QCH_FILE MITK_DOXYGEN_GENERATE_ITK_QCH_FILE)
 
 endif()
 
 
 if(MITK_USE_BLUEBERRY)
   file(RELATIVE_PATH _blueberry_doxygen_path ${MITK_DOXYGEN_OUTPUT_DIR}/html ${BLUEBERRY_DOXYGEN_OUTPUT_DIR}/html)
   set(BLUEBERRY_DOXYGEN_TAGFILE "${BLUEBERRY_DOXYGEN_TAGFILE_NAME}=${_blueberry_doxygen_path}")
   set(BLUEBERRY_DOXYGEN_LINK "<a class=\"el\" href=\"${_blueberry_doxygen_path}/index.html\">BlueBerry Documentation</a>")
   set(MITK_XP_LINK "\\ref mitkExtPointsIndex")
   configure_file(schema.css ${MITK_DOXYGEN_OUTPUT_DIR}/html/schema.css)
   
   set(MITK_DOXYGEN_ENABLED_SECTIONS "${MITK_DOXYGEN_ENABLED_SECTIONS} BLUEBERRY")
 endif(MITK_USE_BLUEBERRY)
 
 # Compile a doxygen input filter for processing CMake scripts
 include(mitkFunctionCMakeDoxygenFilterCompile)
 mitkFunctionCMakeDoxygenFilterCompile(NAMESPACE "CMake")
 
 # Configure some doxygen options
 if(NOT MITK_DOXYGEN_INTERNAL_DOCS)
   set(MITK_DOXYGEN_INTERNAL_DOCS "NO")
   set(MITK_DOXYGEN_HIDE_FRIEND_COMPOUNDS "YES")
   set(MITK_DOXYGEN_EXCLUDE_PATTERNS "*_p.* *Private.h */internal/*")
 else()
   set(MITK_DOXYGEN_HIDE_FRIEND_COMPOUNDS "NO")
   set(MITK_DOXYGEN_EXCLUDE_PATTERNS "")
 endif()
 
 if(NOT MITK_DOXYGEN_GENERATE_TODOLIST)
   set(MITK_DOXYGEN_GENERATE_TODOLIST "NO")
 endif()
 
 if(NOT MITK_DOXYGEN_GENERATE_BUGLIST)
   set(MITK_DOXYGEN_GENERATE_BUGLIST "NO")
 endif()
 
 if(NOT MITK_DOXYGEN_HTML_DYNAMIC_SECTIONS)
   set(MITK_DOXYGEN_HTML_DYNAMIC_SECTIONS "NO")
 endif()
 
 if(NOT MITK_DOXYGEN_UML_LOOK)
   set(MITK_DOXYGEN_UML_LOOK "NO")
 endif()
 
 if(NOT MITK_DOXYGEN_GENERATE_DEPRECATEDLIST)
   set(MITK_DOXYGEN_GENERATE_DEPRECATEDLIST "YES")
 endif()
 
 if(NOT DEFINED MITK_DOXYGEN_DOT_NUM_THREADS)
   set(MITK_DOXYGEN_DOT_NUM_THREADS 0)
 endif()
 
 configure_file(Doxygen/MainPage.dox.in
                ${CMAKE_CURRENT_BINARY_DIR}/Doxygen/MainPage.dox)
 configure_file(doxygen.conf.in
                ${CMAKE_CURRENT_BINARY_DIR}/doxygen.conf)
 
 if(MITK_DOXYGEN_BUILD_ALWAYS)
   set(_doc_in_all "ALL")
 else()
   set(_doc_in_all "")
 endif()
 
 add_custom_target(doc ${_doc_in_all}
                   ${DOXYGEN} ${CMAKE_CURRENT_BINARY_DIR}/doxygen.conf
                   WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
                   )
 
 if(MITK_USE_BLUEBERRY)  
   # convert the extension points schema files into html
   find_package(Ant)
   if(ANT_FOUND AND BLUEBERRY_DOC_TOOLS_DIR)
 
     list(APPEND MITK_XP_GLOB_EXPRESSIONS
-         ${MITK_SOURCE_DIR}/CoreUI/Bundles/plugin.xml
-         ${MITK_SOURCE_DIR}/Modules/Bundles/plugin.xml)
+         ${MITK_SOURCE_DIR}/Plugins/plugin.xml)
 
     file(GLOB_RECURSE _plugin_xmls ${MITK_XP_GLOB_EXPRESSIONS})
                       
     MACRO_CONVERT_SCHEMA(INPUT ${_plugin_xmls} 
                          OUTPUT_DIR "${MITK_DOXYGEN_OUTPUT_DIR}/html/extension-points/html"
                          TARGET_NAME mitkXPDoc
                          )
 
     add_dependencies(doc mitkXPDoc)
     if(${PROJECT_NAME} STREQUAL "MITK")
       add_dependencies(doc BlueBerryDoc)
     endif()
   endif(ANT_FOUND AND BLUEBERRY_DOC_TOOLS_DIR)
 endif(MITK_USE_BLUEBERRY)
 
 #if(MITK_DOXYGEN_GENERATE_ITK_QCH_FILE)
 #  # add the command to generate the ITK documantation
 #  add_custom_target(doc-itk
 #                    COMMAND ${DOXYGEN} ${CMAKE_CURRENT_BINARY_DIR}/doxygen.itk.conf)
 #  add_dependencies(doc doc-itk)
 #endif()
 
 #if(MITK_DOXYGEN_GENERATE_VTK_QCH_FILE)
 #  # add the command to generate the VTK documantation
 #  add_custom_target(doc-vtk
 #                    COMMAND ${DOXYGEN} ${CMAKE_CURRENT_BINARY_DIR}/doxygen.vtk.conf)
 #  add_dependencies(doc doc-vtk)
 #endif()
 
 else(DOXYGEN_FOUND)
 
 # copy blank documentation page to prevent QtHelp from being shown 
 # copy the .qhc and .qch files to $MITK_BIN/mitk/bin/ExtBundles/resources/
 
 configure_file(pregenerated/MITKBlankPage.qch
                ${MITK_BINARY_DIR}/bin/ExtBundles/org.mitk.gui.qt.extapplication/resources/MITKBlankPage.qch
                COPYONLY)
 
 configure_file(pregenerated/MitkExtQtHelpCollection.qhc
                ${MITK_BINARY_DIR}/bin/ExtBundles/org.mitk.gui.qt.extapplication/resources/MitkExtQtHelpCollection.qhc
                COPYONLY)
 
 endif(DOXYGEN_FOUND)
 
diff --git a/Examples/Tutorial/Step1.cpp b/Examples/Tutorial/Step1.cpp
index 55482c0e1c..f60d58d6f0 100644
--- a/Examples/Tutorial/Step1.cpp
+++ b/Examples/Tutorial/Step1.cpp
@@ -1,115 +1,115 @@
 /*===================================================================
 
 The Medical Imaging Interaction Toolkit (MITK)
 
 Copyright (c) German Cancer Research Center, 
 Division of Medical and Biological Informatics.
 All rights reserved.
 
 This software is distributed WITHOUT ANY WARRANTY; without 
 even the implied warranty of MERCHANTABILITY or FITNESS FOR 
 A PARTICULAR PURPOSE.
 
 See LICENSE.txt or http://www.mitk.org for details.
 
 ===================================================================*/
 
 #include "QmitkRegisterClasses.h"
 #include "QmitkRenderWindow.h"
 
 #include <mitkDataNodeFactory.h>
 #include <mitkStandaloneDataStorage.h>
 
 #include <itksys/SystemTools.hxx>
 #include <QApplication>
 
 //##Documentation
-//## @brief Load image (pic format) and display it in a 2D view
+//## @brief Load image (nrrd format) and display it in a 2D view
 int main(int argc, char* argv[])
 {
   QApplication qtapplication( argc, argv );
 
   if (argc < 2)
   {
     fprintf( stderr, "Usage:   %s [filename] \n\n", itksys::SystemTools::GetFilenameName(argv[0]).c_str() );
     return 1;
   }
 
   // Register Qmitk-dependent global instances
   QmitkRegisterClasses();
 
   //*************************************************************************
   // Part I: Basic initialization
   //*************************************************************************
 
   // Create a DataStorage
   // The DataStorage manages all data objects. It is used by the 
   // rendering mechanism to render all data objects
   // We use the standard implementation mitk::StandaloneDataStorage.
   mitk::StandaloneDataStorage::Pointer ds = mitk::StandaloneDataStorage::New();
 
 
   //*************************************************************************
   // Part II: Create some data by reading a file
   //*************************************************************************
 
   // Create a DataNodeFactory to read a data format supported
   // by the DataNodeFactory (many image formats, surface formats, etc.)
   mitk::DataNodeFactory::Pointer reader=mitk::DataNodeFactory::New();
   const char * filename = argv[1];
   try
   {
     reader->SetFileName(filename);
     reader->Update();
     //*************************************************************************
     // Part III: Put the data into the datastorage
     //*************************************************************************
 
     // Add the node to the DataStorage
     ds->Add(reader->GetOutput());
   }
   catch(...)
   {
     fprintf( stderr, "Could not open file %s \n\n", filename );
     exit(2);
   }
 
   //*************************************************************************
   // Part IV: Create window and pass the datastorage to it
   //*************************************************************************
 
   // Create a RenderWindow
   QmitkRenderWindow renderWindow;
 
   // Tell the RenderWindow which (part of) the datastorage to render
   renderWindow.GetRenderer()->SetDataStorage(ds);
 
   // Initialize the RenderWindow
   mitk::TimeSlicedGeometry::Pointer geo = ds->ComputeBoundingGeometry3D(ds->GetAll());
   mitk::RenderingManager::GetInstance()->InitializeViews( geo );
   //mitk::RenderingManager::GetInstance()->InitializeViews();
 
   // Select a slice
   mitk::SliceNavigationController::Pointer sliceNaviController = renderWindow.GetSliceNavigationController();
   if (sliceNaviController)
     sliceNaviController->GetSlice()->SetPos( 0 );
 
   //*************************************************************************
   // Part V: Qt-specific initialization
   //*************************************************************************
   renderWindow.show();
   renderWindow.resize( 256, 256 );
 
   // for testing
   #include "QtTesting.h"
   if (strcmp(argv[argc-1], "-testing") != 0)
     return qtapplication.exec();
   else
     return QtTesting();
 
   // cleanup: Remove References to DataStorage. This will delete the object
   ds = NULL;
 }
 /**
 \example Step1.cpp
 */
diff --git a/Examples/Tutorial/Step2.cpp b/Examples/Tutorial/Step2.cpp
index 62806692b4..df3c30a0a9 100644
--- a/Examples/Tutorial/Step2.cpp
+++ b/Examples/Tutorial/Step2.cpp
@@ -1,121 +1,118 @@
 /*===================================================================
 
 The Medical Imaging Interaction Toolkit (MITK)
 
 Copyright (c) German Cancer Research Center, 
 Division of Medical and Biological Informatics.
 All rights reserved.
 
 This software is distributed WITHOUT ANY WARRANTY; without 
 even the implied warranty of MERCHANTABILITY or FITNESS FOR 
 A PARTICULAR PURPOSE.
 
 See LICENSE.txt or http://www.mitk.org for details.
 
 ===================================================================*/
 
 #include "QmitkRegisterClasses.h"
 #include "QmitkRenderWindow.h"
 
 #include <mitkDataNodeFactory.h>
 #include <mitkStandaloneDataStorage.h>
 
 #include <itksys/SystemTools.hxx>
 #include <QApplication>
 
 //##Documentation
 //## @brief Load one or more data sets (many image, surface
 //## and other formats) and display it in a 2D view
-//##
-//## Only very slightly different to Step1: Use DataNodeFactory
-//## instead of PicFileReader, and read more than one data set.
 int main(int argc, char* argv[])
 {
   QApplication qtapplication( argc, argv );
 
   if(argc<2)
   {
     fprintf( stderr, "Usage:   %s [filename1] [filename2] ...\n\n",
       itksys::SystemTools::GetFilenameName(argv[0]).c_str() );
     return 1;
   }
 
   // Register Qmitk-dependent global instances
   QmitkRegisterClasses();
 
   //*************************************************************************
   // Part I: Basic initialization
   //*************************************************************************
 
   // Create a data storage object. We will use it as a singleton
   mitk::StandaloneDataStorage::Pointer storage = mitk::StandaloneDataStorage::New();
 
   //*************************************************************************
   // Part II: Create some data by reading files
   //*************************************************************************
   int i;
   for(i=1; i<argc; ++i)
   {
     // For testing
     if(strcmp(argv[i], "-testing")==0) continue;
 
     // Create a DataNodeFactory to read a data format supported
     // by the DataNodeFactory (many image formats, surface formats, etc.)
     mitk::DataNodeFactory::Pointer nodeReader=mitk::DataNodeFactory::New();
     const char * filename = argv[i];
     try
     {
       nodeReader->SetFileName(filename);
       nodeReader->Update();
       //*********************************************************************
       // Part III: Put the data into the datastorage
       //*********************************************************************
 
       // Since the DataNodeFactory directly creates a node,
       // use the datastorage to add the read node
       storage->Add(nodeReader->GetOutput());
     }
     catch(...)
     {
       fprintf( stderr, "Could not open file %s \n\n", filename );
       exit(2);
     }
   }
 
   //*************************************************************************
   // Part IV: Create window and pass the datastorage to it
   //*************************************************************************
 
   // Create a RenderWindow
   QmitkRenderWindow renderWindow;
 
   // Tell the RenderWindow which (part of) the datastorage to render
   renderWindow.GetRenderer()->SetDataStorage(storage);
 
   // Initialize the RenderWindow
   mitk::TimeSlicedGeometry::Pointer geo = storage->ComputeBoundingGeometry3D(storage->GetAll());
   mitk::RenderingManager::GetInstance()->InitializeViews( geo );
 
   // Select a slice
   mitk::SliceNavigationController::Pointer sliceNaviController = renderWindow.GetSliceNavigationController();
   if (sliceNaviController)
     sliceNaviController->GetSlice()->SetPos( 2 );
 
 
   //*************************************************************************
   // Part V: Qt-specific initialization
   //*************************************************************************
   renderWindow.show();
   renderWindow.resize( 256, 256 );
 
   // for testing
   #include "QtTesting.h"
   if(strcmp(argv[argc-1], "-testing")!=0)
     return qtapplication.exec();
   else
     return QtTesting();
 }
 
 /**
 \example Step2.cpp
 */