diff --git a/Plugins/org.mitk.gui.qt.diffusionimaging/documentation/UserManual/QmitkPartialVolumeAnalysisViewManual.dox b/Plugins/org.mitk.gui.qt.diffusionimaging/documentation/UserManual/QmitkPartialVolumeAnalysisViewManual.dox index 7308a7018d..67f42a982a 100644 --- a/Plugins/org.mitk.gui.qt.diffusionimaging/documentation/UserManual/QmitkPartialVolumeAnalysisViewManual.dox +++ b/Plugins/org.mitk.gui.qt.diffusionimaging/documentation/UserManual/QmitkPartialVolumeAnalysisViewManual.dox @@ -1,23 +1,25 @@ /** \page org_mitk_views_partialvolumeanalysisview Partial Volume Analysis -The "Partial Volume Analysis" view can be found in the "Quantification" perspective. It allows for robust quantification of diffusion or other scalar measures in the presents of two classes (e.g. fiber vs. non-fiber) and partial volume between them. The algorithm estimates a probabilistic segmentation of the three classes and returns a weighted average of the measure of interest within the each class. +The "Partial Volume Analysis" view can be found in the "Quantification" perspective. It allows for robust quantification of diffusion or other scalar measures in the presents of two classes (e.g. fiber vs. non-fiber) and partial volume between them. The algorithm estimates a probabilistic segmentation of the three classes and returns a weighted average of the measure of interest within the each class. \image html pvanalysisview.png The Partial Volume Analysis View \section QmitkPVAAnalysisUserManualExport Export -All measures are automatically written to the clipboard once the estimation is updated. The histogram export is provided by the button underneath the histogram. The values can be pasted to excel or any text editor. +All measures are automatically written to the clipboard once the estimation is updated. For scalar images, the mean and the variance of the gaussian selected in the radio-box above is copied out. If 'All' is selected, then all means and variances are carried out as a tab-separated list. For tensor images, the values for all scalar measures (FA, MD, RD and AD) are carried out to the clipboard. + +The histogram export is provided by the button underneath the histogram. The values can be pasted to excel or any text editor. \section QmitkPVAAnalysisUserManualAdvancedSettings Advanced Settings Are not recommended for use yet. \section QmitkPVAAnalysisUserManualSuggestedReadings Suggested Readings Diffusion tensor imaging in primary brain tumors: reproducible quantitative analysis of corpus callosum infiltration and contralateral involvement using a probabilistic mixture model. Stieltjes B, Schlüter M, Didinger B, Weber MA, Hahn HK, Parzer P, Rexilius J, Konrad-Verse O, Peitgen HO, Essig M. Neuroimage. 2006 Jun;31(2):531-42. Epub 2006 Feb 14. PMID: 16478665 */ diff --git a/Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkPartialVolumeAnalysisViewControls.ui b/Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkPartialVolumeAnalysisViewControls.ui index c8766b03fc..91ec9a28aa 100644 --- a/Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkPartialVolumeAnalysisViewControls.ui +++ b/Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkPartialVolumeAnalysisViewControls.ui @@ -1,800 +1,845 @@ QmitkPartialVolumeAnalysisViewControls true 0 0 360 - 528 + 565 Form 0 9 3 9 3 Data 0 0 Tensor/Scalar Image: 0 0 Mask Image: <html><head/><body><p><span style=" color:#ff0000;">mandatory</span></p></body></html> <html><head/><body><p><span style=" color:#ff0000;">mandatory</span></p></body></html> Parameters QFrame::NoFrame QFrame::Raised 0 QFrame::NoFrame QFrame::Raised 0 0 false QFrame::NoFrame QFrame::Raised 0 30 30 Draw circular ROI :/QmitkDiffusionImaging/circle.png:/QmitkDiffusionImaging/circle.png 32 32 true true 30 30 Draw quadratic ROI :/QmitkDiffusionImaging/rectangle.png:/QmitkDiffusionImaging/rectangle.png 32 32 true true 30 30 Draw polygonal ROI :/QmitkDiffusionImaging/polygon.png:/QmitkDiffusionImaging/polygon.png 32 32 true true Qt::Horizontal 40 20 true QFrame::NoFrame QFrame::Raised QFormLayout::AllNonFixedFieldsGrow 0 Upsampling QFrame::NoFrame QFrame::Raised 0 1 50 1 25 Qt::Horizontal 50 0 2.5 Similar angles QFrame::NoFrame 0 90 0 Qt::Horizontal QSlider::NoTicks 50 0 90° QFrame::NoFrame QFrame::Raised 0 0 display histogram true 0 0 QFrame::NoFrame QFrame::Raised 0 QFrame::NoFrame QFrame::Raised 0 20 20 true true Green Partial Volume Partial Volume Partial Volume Partial Volume PV Red true All Export clustering result as float image. ... - + :/org.mitk.gui.qt.diffusionimaging/resources/arrow.png:/org.mitk.gui.qt.diffusionimaging/resources/arrow.png QFrame::NoFrame 0 Opacity 10 5 Qt::Horizontal QSlider::TicksBelow - - + + + + Qt::Vertical + + + QSizePolicy::Fixed + + + + 20 + 10 + + + + + + - Histogram to Clipboard + The computed class values (median, variance of the gaussians) are automatically copied to clipboard. + + + Qt::AutoText + + + true + + + + Qt::Vertical + + + QSizePolicy::Fixed + + + + 20 + 10 + + + + + + + + Histogram to Clipboard + + + Advanced Qt::Vertical QSizePolicy::Preferred 10 1 QFrame::NoFrame QFrame::Raised QFormLayout::AllNonFixedFieldsGrow 0 Blurring QFrame::NoFrame QFrame::Raised 0 200 1 0 Qt::Horizontal 50 0 0.0 # Bins QFrame::NoFrame 0 1 100 10 Qt::Horizontal QSlider::NoTicks 50 0 50 quantiles QFrame::StyledPanel QFrame::Raised 0 1.000000000000000 0.010000000000000 0.250000000000000 1.000000000000000 0.010000000000000 0.750000000000000 Estimate circle from binary image "Thick" PFs Qt::Vertical 20 40 QmitkPartialVolumeAnalysisWidget QWidget
QmitkPartialVolumeAnalysisWidget.h
1
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