Merge branch 'T28947-TractRad'
2a48ddbaa8ea
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Merge branch 'T28947-TractRad'

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neher	Authored on Mar 31 2022, 12:39 PM
neher	Pushed on Mar 31 2022, 12:40 PM

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rMITKDIFF91c712d9559f: removed tract parcellation
rMITKDIFFb1bf62d1c76f: Merge branch 'T28901-DistanceToSurface'

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neher committed rMITKDIFF2a48ddbaa8ea: Merge branch 'T28947-TractRad' (authored by neher).Mar 31 2022, 12:39 PM

Merged Changes

91c712d9559f removed tract parcellation
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50ce689e30a6 Account for trackvis corner-based coordinates
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c781f453a044 refactoring
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52efa144000e enabling more outputs
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a32d41634e6c fixed stuck parcellation
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f433cb5ca332 restructured cdmapps
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3596f107e46d num parcels parameter
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67e23c7bac14 code for comparing tractometry approaches
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7c8673c42913 move tractometry out of view
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b5b19e94e1bf Interpolating image values
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fff7dd9d37ca Visualizing parcdellation statistics
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32917714164b refactor color lookuptables. auto select number of segments.
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7c2304981c16 added tract parcellation cmdapp
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eedf6efa5a6a Created dedicated tract parcellation filter
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7b0842815a80 tract parcellation
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baa78614307d added basic segment creation
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Changes (62)

Path

Size

CMake/

BuildConfigurations/

DiffusionAll.cmake

DiffusionCmdApps_NoPython.cmake

DiffusionRelease.cmake

DiffusionRelease_NoPython.cmake

Modules/

DiffusionCmdApps/

CMakeLists.txt

FiberProcessing/

CMakeLists.txt

DistanceToSegmentation.cpp

	FiberColoring.cpp
	Sift2WeightCopy.cpp

FitFibersToImage.cpp

PrintFiberStatistics.cpp

TractDensity.cpp

TractDensityFilter.cpp

FiberQuantification

	FiberQuantification/
	FiberProcessing/

CMakeLists.txt

DistanceToSegmentation.cpp

PrintFiberStatistics.cpp

TractDensity.cpp

	ImageQuantification
	Quantification/

CMakeLists.txt

DiffusionIndices.cpp

DiffusionIvimFit.cpp

DiffusionKurtosisFit.cpp

MultishellMethods.cpp

QballReconstruction.cpp

TensorReconstruction.cpp

DiffusionKurtosisFit.cpp

MultishellMethods.cpp

QballReconstruction.cpp

TensorReconstruction.cpp

TractographyEvaluation/

AnchorConstrainedPlausibility.cpp

GetOverlappingTracts.cpp

MergeOverlappingTracts.cpp

mitkDiffusionDataIOHelper.h

DiffusionCore/

IODataStructures/

mitkFiberBundle.cpp

mitkFiberBundle.h

mitkTrackvis.cpp

mitkDiffusionFunctionCollection.cpp

FiberTracking/

Algorithms/

TrackingHandlers/

mitkTrackingHandlerRandomForest.cpp

itkTractDensityImageFilter.cpp

itkTractDensityImageFilter.h

itkTractsToVectorImageFilter.cpp

mitkTractClusteringFilter.cpp

mitkTractometry.cpp

mitkTractometry.h

files.cmake

MriSimulation/

Algorithms/

itkTractsToDWIImageFilter.cpp

Plugins/

org.mitk.gui.qt.diffusionimaging.fiberprocessing/

CMakeLists.txt

src/

internal/

QmitkFiberClusteringView.cpp

QmitkFiberClusteringViewControls.ui

QmitkFiberFitView.cpp

QmitkFiberProcessingView.cpp

QmitkFiberProcessingViewControls.ui

QmitkFiberQuantificationView.cpp

QmitkFiberQuantificationView.h

QmitkFiberQuantificationViewControls.ui

QmitkTractometryView.cpp

QmitkTractometryView.h

QmitkTractometryViewControls.ui

rMITKDIFF2a48ddbaa8ea

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CMake/BuildConfigurations/DiffusionAll.cmake

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CMake/BuildConfigurations/DiffusionCmdApps_NoPython.cmake

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CMake/BuildConfigurations/DiffusionRelease.cmake

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CMake/BuildConfigurations/DiffusionRelease_NoPython.cmake

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Modules/DiffusionCmdApps/CMakeLists.txt

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Modules/DiffusionCmdApps/FiberProcessing/CMakeLists.txt

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Modules/DiffusionCmdApps/FiberProcessing/DistanceToSegmentation.cpp

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Modules/DiffusionCmdApps/FiberProcessing/FiberColoring.cpp

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Modules/DiffusionCmdApps/FiberProcessing/FitFibersToImage.cpp

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Modules/DiffusionCmdApps/FiberProcessing/PrintFiberStatistics.cpp

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Modules/DiffusionCmdApps/FiberProcessing/TractDensity.cpp

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Modules/DiffusionCmdApps/FiberProcessing/TractDensityFilter.cpp

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Modules/DiffusionCmdApps/FiberQuantification/CMakeLists.txt

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Modules/DiffusionCmdApps/FiberQuantification/DistanceToSegmentation.cpp

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Modules/DiffusionCmdApps/FiberQuantification/PrintFiberStatistics.cpp

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Modules/DiffusionCmdApps/FiberQuantification/TractDensity.cpp

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Modules/DiffusionCmdApps/ImageQuantification/CMakeLists.txt

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Modules/DiffusionCmdApps/ImageQuantification/DiffusionIndices.cpp

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Modules/DiffusionCmdApps/ImageQuantification/DiffusionIvimFit.cpp

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Modules/DiffusionCmdApps/ImageQuantification/DiffusionKurtosisFit.cpp

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Modules/DiffusionCmdApps/ImageQuantification/MultishellMethods.cpp

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Modules/DiffusionCmdApps/ImageQuantification/QballReconstruction.cpp

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Modules/DiffusionCmdApps/ImageQuantification/TensorReconstruction.cpp

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Modules/DiffusionCmdApps/Quantification/CMakeLists.txt

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Modules/DiffusionCmdApps/Quantification/DiffusionIndices.cpp

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Modules/DiffusionCmdApps/Quantification/DiffusionIvimFit.cpp

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Modules/DiffusionCmdApps/Quantification/DiffusionKurtosisFit.cpp

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Modules/DiffusionCmdApps/Quantification/MultishellMethods.cpp

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Modules/DiffusionCmdApps/Quantification/QballReconstruction.cpp

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Modules/DiffusionCmdApps/Quantification/TensorReconstruction.cpp

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Modules/DiffusionCmdApps/TractographyEvaluation/AnchorConstrainedPlausibility.cpp

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Modules/DiffusionCmdApps/TractographyEvaluation/GetOverlappingTracts.cpp

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Modules/DiffusionCmdApps/TractographyEvaluation/MergeOverlappingTracts.cpp

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Modules/DiffusionCmdApps/mitkDiffusionDataIOHelper.h

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Modules/DiffusionCore/IODataStructures/mitkFiberBundle.cpp

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Modules/DiffusionCore/IODataStructures/mitkFiberBundle.h

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Modules/DiffusionCore/IODataStructures/mitkTrackvis.cpp

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Modules/DiffusionCore/mitkDiffusionFunctionCollection.cpp

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Modules/FiberTracking/Algorithms/TrackingHandlers/mitkTrackingHandlerRandomForest.cpp

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Modules/FiberTracking/Algorithms/itkTractDensityImageFilter.cpp

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Modules/FiberTracking/Algorithms/itkTractDensityImageFilter.h

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Modules/FiberTracking/Algorithms/itkTractsToVectorImageFilter.cpp

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Modules/FiberTracking/Algorithms/mitkTractClusteringFilter.cpp

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Modules/FiberTracking/Algorithms/mitkTractometry.cpp

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Modules/FiberTracking/Algorithms/mitkTractometry.h

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Modules/FiberTracking/files.cmake

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Modules/MriSimulation/Algorithms/itkTractsToDWIImageFilter.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/CMakeLists.txt

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberClusteringView.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberClusteringViewControls.ui

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberFitView.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingView.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingViewControls.ui

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberQuantificationView.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberQuantificationView.h

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberQuantificationViewControls.ui

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkTractometryView.cpp

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkTractometryView.h

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Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkTractometryViewControls.ui

Merge branch 'T28947-TractRad'2a48ddbaa8eaActions

Description

Details

Event Timeline

Merged Changes

Changes (62)

rMITKDIFF2a48ddbaa8ea

CMake/BuildConfigurations/DiffusionAll.cmake

CMake/BuildConfigurations/DiffusionCmdApps_NoPython.cmake

CMake/BuildConfigurations/DiffusionRelease.cmake

CMake/BuildConfigurations/DiffusionRelease_NoPython.cmake

Modules/DiffusionCmdApps/CMakeLists.txt

Modules/DiffusionCmdApps/FiberProcessing/CMakeLists.txt

Modules/DiffusionCmdApps/FiberProcessing/DistanceToSegmentation.cpp

Modules/DiffusionCmdApps/FiberProcessing/FiberColoring.cpp

Modules/DiffusionCmdApps/FiberProcessing/FitFibersToImage.cpp

Modules/DiffusionCmdApps/FiberProcessing/PrintFiberStatistics.cpp

Modules/DiffusionCmdApps/FiberProcessing/TractDensity.cpp

Modules/DiffusionCmdApps/FiberProcessing/TractDensityFilter.cpp

Modules/DiffusionCmdApps/FiberQuantification/CMakeLists.txt

Modules/DiffusionCmdApps/FiberQuantification/DistanceToSegmentation.cpp

Modules/DiffusionCmdApps/FiberQuantification/PrintFiberStatistics.cpp

Modules/DiffusionCmdApps/FiberQuantification/TractDensity.cpp

Modules/DiffusionCmdApps/ImageQuantification/CMakeLists.txt

Modules/DiffusionCmdApps/ImageQuantification/DiffusionIndices.cpp

Modules/DiffusionCmdApps/ImageQuantification/DiffusionIvimFit.cpp

Modules/DiffusionCmdApps/ImageQuantification/DiffusionKurtosisFit.cpp

Modules/DiffusionCmdApps/ImageQuantification/MultishellMethods.cpp

Modules/DiffusionCmdApps/ImageQuantification/QballReconstruction.cpp

Modules/DiffusionCmdApps/ImageQuantification/TensorReconstruction.cpp

Modules/DiffusionCmdApps/Quantification/CMakeLists.txt

Modules/DiffusionCmdApps/Quantification/DiffusionIndices.cpp

Modules/DiffusionCmdApps/Quantification/DiffusionIvimFit.cpp

Modules/DiffusionCmdApps/Quantification/DiffusionKurtosisFit.cpp

Modules/DiffusionCmdApps/Quantification/MultishellMethods.cpp

Modules/DiffusionCmdApps/Quantification/QballReconstruction.cpp

Modules/DiffusionCmdApps/Quantification/TensorReconstruction.cpp

Modules/DiffusionCmdApps/TractographyEvaluation/AnchorConstrainedPlausibility.cpp

Modules/DiffusionCmdApps/TractographyEvaluation/GetOverlappingTracts.cpp

Modules/DiffusionCmdApps/TractographyEvaluation/MergeOverlappingTracts.cpp

Modules/DiffusionCmdApps/mitkDiffusionDataIOHelper.h

Modules/DiffusionCore/IODataStructures/mitkFiberBundle.cpp

Modules/DiffusionCore/IODataStructures/mitkFiberBundle.h

Modules/DiffusionCore/IODataStructures/mitkTrackvis.cpp

Modules/DiffusionCore/mitkDiffusionFunctionCollection.cpp

Modules/FiberTracking/Algorithms/TrackingHandlers/mitkTrackingHandlerRandomForest.cpp

Modules/FiberTracking/Algorithms/itkTractDensityImageFilter.cpp

Modules/FiberTracking/Algorithms/itkTractDensityImageFilter.h

Modules/FiberTracking/Algorithms/itkTractsToVectorImageFilter.cpp

Modules/FiberTracking/Algorithms/mitkTractClusteringFilter.cpp

Modules/FiberTracking/Algorithms/mitkTractometry.cpp

Modules/FiberTracking/Algorithms/mitkTractometry.h

Modules/FiberTracking/files.cmake

Modules/MriSimulation/Algorithms/itkTractsToDWIImageFilter.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/CMakeLists.txt

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberClusteringView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberClusteringViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberFitView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberQuantificationView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberQuantificationView.h

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberQuantificationViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkTractometryView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkTractometryView.h

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkTractometryViewControls.ui

Merge branch 'T28947-TractRad'
2a48ddbaa8ea
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