diff --git a/Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingViewControls.ui b/Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingViewControls.ui index a2bd0f7..52a8255 100644 --- a/Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingViewControls.ui +++ b/Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/src/internal/QmitkFiberProcessingViewControls.ui @@ -1,1825 +1,1824 @@ QmitkFiberProcessingViewControls 0 0 953 1244 Form QCommandLinkButton:disabled { border: none; } QGroupBox { background-color: transparent; } 9 9 9 9 - 75 true - 2 + 0 5 0 0 - 935 - 790 + 921 + 503 Fiber Extraction Extract a fiber subset from the selected fiber bundle using manually placed planar figures as waypoints or binary regions of interest. Qt::Vertical 20 40 QFrame::NoFrame QFrame::Raised 0 0 0 0 Min. overlap: Threshold: Min. num. fibers: Threshold on ROI image for positions to be considered as positive. 3 9999.000000000000000 0.100000000000000 0.500000000000000 0 0 Ending in ROI Not ending in ROI Passing ROI Not passing ROI Labelmap Both ends true Interpolate ROI true 1 999999999 Extract fibers: Minimum overlap of streamlines and ROI in terms of streamline length. Zero means that one streamline point inside the ROI is enough to be considered as "overlapping". 3 1.000000000000000 0.100000000000000 Labels: Label values seperated by whitespace. ALL false 0 0 200 16777215 11 Extract fibers passing through selected ROI or composite ROI. Select ROI and fiber bundle to execute. Extract 0 0 Extract using planar figures Extract using ROI image QFrame::NoFrame QFrame::Raised 0 0 0 0 6 Interactive Extraction 0 0 200 0 16777215 60 QFrame::NoFrame QFrame::Raised 0 0 0 0 30 30 Draw circular ROI. Select reference fiber bundle to execute. - + :/org.mitk.gui.qt.diffusionimaging.fiberprocessing/resources/circle.png:/org.mitk.gui.qt.diffusionimaging.fiberprocessing/resources/circle.png 32 32 false true Qt::Horizontal 40 20 30 30 Draw polygonal ROI. Select reference fiber bundle to execute. - + :/org.mitk.gui.qt.diffusionimaging.fiberprocessing/resources/polygon.png:/org.mitk.gui.qt.diffusionimaging.fiberprocessing/resources/polygon.png 32 32 - true + false true 0 0 200 0 16777215 60 QFrame::NoFrame QFrame::Raised 0 0 0 0 false 60 16777215 Create NOT composition from selected ROI. NOT false 60 16777215 Create OR composition with selected ROIs. OR Qt::Horizontal 40 20 false 60 16777215 Create AND composition with selected ROIs. AND false 0 0 16777215 16777215 11 Generate a binary image containing all selected ROIs. Select at least one ROI (planar figure) and a reference fiber bundle or image. Generate ROI Image 0 0 - 907 - 850 + 921 + 456 Fiber Removal Remove fibers that satisfy certain criteria from the selected bundle. QFrame::NoFrame QFrame::Raised 0 0 0 0 0 X: Y: Z: Angle: Angular deviation threshold in degree 1 90.000000000000000 1.000000000000000 25.000000000000000 QFrame::NoFrame QFrame::Raised 0 0 0 0 0 Weight threshold: Only fibers with weight larger than this threshold are kept. 5 99999.000000000000000 0.100000000000000 false 0 0 200 16777215 11 Remove 0 0 Remove fibers in direction Remove fibers by length Remove fibers by curvature Remove fiber parts outside mask Remove fiber parts inside mask Remove fibers by weight Remove fibers by tract density QFrame::NoFrame QFrame::Raised 0 0 0 0 If unchecked, the fiber exceeding the threshold will be split in two instead of removed. Remove Fiber false QFrame::NoFrame QFrame::Raised 0 0 0 0 0 Max. Angular Deviation: Qt::Horizontal 40 20 Maximum angular deviation in degree 180.000000000000000 0.100000000000000 30.000000000000000 Distance: Distance in mm 1 999.000000000000000 1.000000000000000 10.000000000000000 Qt::Vertical 20 40 QFrame::NoFrame QFrame::Raised 0 0 0 0 Qt::Horizontal 40 20 Minimum fiber length in mm 0 999999999 20 Max. Length: Min. Length: Maximum fiber length in mm 0 999999999 300 QFrame::NoFrame QFrame::Raised 0 0 0 0 0 6 Relative tract density (value between 0.0 and 1.0) 5 0.000000000000000 1.000000000000000 0.100000000000000 0.050000000000000 Density threshold: Min. overlap: Tracts have to spend at least this fraction of their length inside the specified density region. 3 1.000000000000000 0.100000000000000 0.500000000000000 0 0 - 935 - 816 + 921 + 461 Bundle Modification Modify the selected bundle with operations such as fiber resampling, FA coloring, etc. QFrame::NoFrame QFrame::Raised 0 0 0 0 0 6 Error threshold in mm: 999999999.000000000000000 0.100000000000000 0.100000000000000 QFrame::NoFrame QFrame::Raised 0 0 0 0 0 6 Sagittal Coronal Axial Select direction: QFrame::NoFrame QFrame::Raised 0 0 0 0 0 6 Scalar map: If checked, the image values are not only used to color the fibers but are also used as opaxity values. Values as opacity false JET HOT_IRON PLASMA INFERNO VIRIDIS MAGMA GRAYSCALE MULTILABEL If checked, the (mean) unnormalized values per fiber are also used as fiber weights, e.g. the fiber length in mm. Values as weight false QFrame::StyledPanel QFrame::Raised 0 0 0 0 0 Value cap: 3 1.000000000000000 0.100000000000000 0.950000000000000 0 0 Resample fibers (spline) Resample fibers (linear) Compress fibers Mirror fibers Weight bundle Color fibers by fiber weights Color & weight fibers by curvature Color & weight fibers by length Color & weight fibers by scalar map (e.g. FA) QFrame::NoFrame QFrame::Raised 0 0 0 0 0 6 0.010000000000000 999999999.000000000000000 0.100000000000000 1.000000000000000 Point distance in mm: Qt::Vertical 20 40 false 0 0 200 16777215 11 Execute QFrame::NoFrame QFrame::Raised 0 0 0 0 0 Weight: 7 999999999.000000000000000 0.100000000000000 1.000000000000000 0 0 935 - 346 + 447 Bundle Operations Join, subtract or copy bundles. false 0 0 200 16777215 11 Returns all fibers contained in bundle X that are not contained in bundle Y (not commutative!). Select at least two fiber bundles to execute. Substract Qt::Vertical 20 40 false 0 0 200 16777215 11 Merge selected fiber bundles. Select at least two fiber bundles to execute. Join false 0 0 200 16777215 11 Merge selected fiber bundles. Select at least two fiber bundles to execute. Copy Please Select Input Data 6 6 6 6 <html><head/><body><p><span style=" color:#ff0000;">mandatory</span></p></body></html> true <html><head/><body><p><span style=" color:#969696;">needed for extraction</span></p></body></html> true Input DTI Fiber Bundle: Binary seed ROI. If not specified, the whole image area is seeded. ROI: Qt::Vertical 20 40 QmitkDataStorageComboBox QComboBox
QmitkDataStorageComboBox.h