diff --git a/Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkTractbasedSpatialStatisticsView.h b/Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkTractbasedSpatialStatisticsView.h index 048c5a059f..1cde1ffe59 100644 --- a/Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkTractbasedSpatialStatisticsView.h +++ b/Plugins/org.mitk.gui.qt.diffusionimaging/src/internal/QmitkTractbasedSpatialStatisticsView.h @@ -1,273 +1,272 @@ /*========================================================================= Program: Medical Imaging & Interaction Toolkit Language: C++ Date: $Date: 2010-03-31 16:40:27 +0200 (Mi, 31 Mrz 2010) $ Version: $Revision: 21975 $ Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. See MITKCopyright.txt or http://www.mitk.org/copyright.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notices for more information. =========================================================================*/ #ifndef QmitkTractbasedSpatialStatisticsView_h #define QmitkTractbasedSpatialStatisticsView_h #include #include #include #include #include "ui_QmitkTractbasedSpatialStatisticsViewControls.h" #include #include #include #include #include #include #include #include #include #include "QmitkTbssTableModel.h" #include "QmitkTbssMetaTableModel.h" #include typedef short DiffusionPixelType; typedef itk::Image CharImageType; typedef itk::Image UCharImageType; typedef itk::Image Float4DImageType; typedef itk::Image FloatImageType; typedef itk::Vector IntVectorType; //typedef itk::VectorImage DirectionImageType; typedef itk::VectorImage VectorImageType; typedef itk::ImageFileReader< CharImageType > CharReaderType; typedef itk::ImageFileReader< UCharImageType > UCharReaderType; typedef itk::ImageFileWriter< CharImageType > CharWriterType; typedef itk::ImageFileReader< FloatImageType > FloatReaderType; typedef itk::ImageFileWriter< FloatImageType > FloatWriterType; typedef itk::ImageFileReader< Float4DImageType > Float4DReaderType; typedef itk::ImageFileWriter< Float4DImageType > Float4DWriterType; struct TbssSelListener; /*! \brief QmitkTractbasedSpatialStatisticsView \warning This application module is not yet documented. Use "svn blame/praise/annotate" and ask the author to provide basic documentation. \sa QmitkFunctionalitymitkTbssWorkspaceManager \ingroup Functionalities */ class QmitkTractbasedSpatialStatisticsView : public QmitkFunctionality { friend struct TbssSelListener; // this is needed for all Qt objesetupUicts that should have a Qt meta-object // (everything that derives from QObject and wants to have signal/slots) Q_OBJECT public: static const std::string VIEW_ID; QmitkTractbasedSpatialStatisticsView(); virtual ~QmitkTractbasedSpatialStatisticsView(); virtual void CreateQtPartControl(QWidget *parent); /// \brief Creation of the connections of main and control widget virtual void CreateConnections(); virtual void StdMultiWidgetAvailable (QmitkStdMultiWidget &stdMultiWidget); virtual void StdMultiWidgetNotAvailable(); /// \brief Called when the functionality is activated virtual void Activated(); virtual void Deactivated(); protected slots: //void OutputValues(); // void InitializeGridByVectorImage(); void Masking(); void CreateRoi(); void Clustering(); void AdjustPlotMeasure(const QString & text); void Clicked(const QwtDoublePoint& pos); void TbssImport(); void AddGroup(); void RemoveGroup(); void CopyToClipboard(); - void Transform(); void SetDxx(); void SetDyy(); void SetDzz(); void SetDxy(); void SetDxz(); void SetDyz(); void ImportTensorByComps(); protected: void SetTensorComponent(QLineEdit* edit, mitk::DataNode::Pointer node); /// \brief called by QmitkFunctionality when DataManager's selection has changed virtual void OnSelectionChanged( std::vector nodes ); void Plot(mitk::TbssImage*, mitk::TbssRoiImage*); void PlotFiberBundle(mitk::FiberBundleX* fib, mitk::Image* img); void InitPointsets(); void SetDefaultNodeProperties(mitk::DataNode::Pointer node, std::string name); berry::ISelectionListener::Pointer m_SelListener; berry::IStructuredSelection::ConstPointer m_CurrentSelection; bool m_IsInitialized; mitk::PointSet::Pointer m_PointSetNode; mitk::DataNode::Pointer m_P1; Ui::QmitkTractbasedSpatialStatisticsViewControls* m_Controls; QmitkStdMultiWidget* m_MultiWidget; std::vector SortPoints(CharImageType::Pointer roi, CharImageType::IndexType currentPoint); bool PointVisited(std::vector points, CharImageType::IndexType point); // Modifies the current point by reference and returns true if no more points need to be visited CharImageType::IndexType FindNextPoint(std::vector pointsVisited, CharImageType::IndexType currentPoint, CharImageType::Pointer roi, bool &ready); //void DoInitializeGridByVectorImage(FloatVectorImageType::Pointer vectorpic, CharImageType::Pointer roi ,std::string name); // Tokenizer needed for the roi files void Tokenize(const std::string& str, std::vector& tokens, const std::string& delimiters = " ") { // Skip delimiters at beginning. std::string::size_type lastPos = str.find_first_not_of(delimiters, 0); // Find first "non-delimiter". std::string::size_type pos = str.find_first_of(delimiters, lastPos); while (std::string::npos != pos || std::string::npos != lastPos) { // Found a token, add it to the vector. tokens.push_back(str.substr(lastPos, pos - lastPos)); // Skip delimiters. Note the "not_of" lastPos = str.find_first_not_of(delimiters, pos); // Find next "non-delimiter" pos = str.find_first_of(delimiters, lastPos); } } mitk::DataNode::Pointer readNode(std::string f) { mitk::DataNode::Pointer node; mitk::DataNodeFactory::Pointer nodeReader = mitk::DataNodeFactory::New(); try { nodeReader->SetFileName(f); nodeReader->Update(); node = nodeReader->GetOutput(); } catch(...) { MITK_ERROR << "Could not read file"; return NULL; } return node; } /*template < typename TPixel, unsigned int VImageDimension > void ToITK4D( itk::Image* inputImage, Float4DImageType::Pointer& outputImage );*/ std::string ReadFile(std::string whatfile); std::vector< itk::Index<3> > m_Roi; std::string m_CurrentStructure; mitk::Geometry3D* m_CurrentGeometry; QmitkTbssTableModel* m_GroupModel; void AddTbssToDataStorage(mitk::Image* image, std::string name); mitk::TbssImage::Pointer m_CurrentTbssMetaImage; VectorImageType::Pointer ConvertToVectorImage(mitk::Image::Pointer mitkImg); mitk::DataNode::Pointer m_DxxNode; mitk::DataNode::Pointer m_DxyNode; mitk::DataNode::Pointer m_DxzNode; mitk::DataNode::Pointer m_DyzNode; mitk::DataNode::Pointer m_DyyNode; mitk::DataNode::Pointer m_DzzNode; }; #endif // _QMITKTRACTBASEDSPATIALSTATISTICSVIEW_H_INCLUDED