diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/QmitkWelcomeScreenView.qrc b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/QmitkWelcomeScreenView.qrc index 99f458fc02..0dfb63b9ab 100644 --- a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/QmitkWelcomeScreenView.qrc +++ b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/QmitkWelcomeScreenView.qrc @@ -1,34 +1,30 @@ style.css function.js pics/background.jpg pics/popup_bttn_close.png - pics/dti.jpg - pics/dti_animated.gif pics/experimental.png - pics/0aref_alltracts.png - pics/0aaref_alltracts.png - pics/0bref_colormap.gif - pics/0bref_colormap.png - pics/0cref_t1.gif - pics/0cref_t1.png - pics/01aCING.png - pics/01CING.png - pics/02aCORPUS.png - pics/02CORPUS.png - pics/03aCST.png - pics/03CST.png - pics/04aFORNIX.png - pics/04FORNIX.png - pics/05aILF+IFO+UNCUS.png - pics/05ILF+IFO+UNCUS.png - pics/06aSLF+SOFF+ARCUATE.png - pics/06SLF+SOFF+ARCUATE.png - pics/07aPEDUNCLES.png - pics/07PEDUNCLES.png pics/button_mitka.png pics/button_mitk.png mitkdiffusionimagingappwelcomeview.html + pics/01adicomimport.png + pics/01dicomimport.png + pics/02apreprocessingreconstruction.png + pics/02preprocessingreconstruction.png + pics/03aquantification.png + pics/03quantification.png + pics/04atractography.png + pics/04tractography.png + pics/05atbss.png + pics/05tbss.png + pics/06aconnectomics.png + pics/06connectomics.png + pics/07aivim.png + pics/07ivim.png + pics/08avolumevisualization.png + pics/08volumevisualization.png + pics/09ascreenshotsmovies.png + pics/09screenshotsmovies.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/function.js b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/function.js index dc2a8d7226..16a2b7c452 100644 --- a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/function.js +++ b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/function.js @@ -1,317 +1,311 @@ // If you want to create a new button you have to add some data (strings) to the following five arrays. // Make sure that you add your data at the same position in each array. // The buttons will be generated in order to the array's index. e.g. data at array's index '0' will generate the first button. // enter the name of your module here -var moduleNames = new Array("Colormap", - "T1 Image", - "3D Background", - "Cingulum", - "Corpus Callosum", - "Corticospinal Tract", - "Fornix", - "ILF, IFO, Uncus", - "SLF, SOFF, Arcuate", - "ICP, MCP, SCP, ML", - "Download MITK"); +var moduleNames = new Array("Dicom Import", + "Preprocessing & Reconstruction", + "Quantification", + "Tractography", + "TBSS", + "Connectomics", + "IVIM", + "Volume Visualization", + "Screenshots & Movies", + "MITK Downloads & News"); // add the MITK-link to your module -var moduleLinks = new Array("mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.diffusionimagingapp?clear=false&dataset=./bin/atlas-data/0bref_colormap.mitk", - "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.diffusionimagingapp?clear=false&dataset=./bin/atlas-data/0cref_t1.mitk", - "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.diffusionimagingapp?clear=false&dataset=./bin/atlas-data/0aref_alltracts.mitk", - "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.diffusionimagingapp?clear=false&dataset=./bin/atlas-data/01CING.mitk", - "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.diffusionimagingapp?clear=false&dataset=./bin/atlas-data/02CORPUS.mitk", - "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.diffusionimagingapp?clear=false&dataset=./bin/atlas-data/03CST.mitk", - "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.diffusionimagingapp?clear=false&dataset=./bin/atlas-data/04FORNIX.mitk", - "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.diffusionimagingapp?clear=false&dataset=./bin/atlas-data/05ILF+IFO+UNCUS.mitk", - "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.diffusionimagingapp?clear=false&dataset=./bin/atlas-data/06SLF+SOFF+ARCUATE.mitk", - "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.diffusionimagingapp?clear=true&dataset=./bin/atlas-data/07PEDUNCLES.mitk", +var moduleLinks = new Array("mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.dicomimport?clear=false", + "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.preprocessingreconstruction?clear=false", + "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.quantification?clear=false", + "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.tractography?clear=false", + "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.tbss?clear=false", + "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.connectomics?clear=false", + "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.ivim?clear=false", + "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.volumevisualization?clear=false", + "mitk://mitk.perspectives/org.mitk.diffusionimagingapp.perspectives.screenshotsmovies?clear=false", "http://www.mitk.org"); // add the filename of your icon for the module. Place the picture in subdirectory "pics". // The picture's width should be 136 pixel; the height 123 pixel. -var picFilenames = new Array("0bref_colormap.png", - "0cref_t1.png", - "0aref_alltracts.png", - "01CING.png", - "02CORPUS.png", - "03CST.png", - "04FORNIX.png", - "05ILF+IFO+UNCUS.png", - "06SLF+SOFF+ARCUATE.png", - "07PEDUNCLES.png", +var picFilenames = new Array("01dicomimport.png", + "02preprocessingreconstruction.png", + "03quantification.png", + "04tractography.png", + "05tbss.png", + "06connectomics.png", + "07ivim.png", + "08volumevisualization.png", + "09screenshotsmovies.png", "button_mitk.png"); // if you want to create an animated icon, add the name of your animated gif (placed in subdirectory "pics"). Otherwise enter an empty string "". // The animation's width should be 136 pixel; the height 123 pixel. -var aniFilenames = new Array("0bref_colormap.gif", - "0cref_t1.gif", - "0aaref_alltracts.png", - "01aCING.png", - "02aCORPUS.png", - "03aCST.png", - "04aFORNIX.png", - "05aILF+IFO+UNCUS.png", - "06aSLF+SOFF+ARCUATE.png", - "07aPEDUNCLES.png", +var aniFilenames = new Array("01adicomimport.png", + "02apreprocessingreconstruction.png", + "03aquantification.png", + "04atractography.png", + "05atbss.png", + "06aconnectomics.png", + "07aivim.png", + "08avolumevisualization.png", + "09ascreenshotsmovies.png", "button_mitka.png"); // if your module is not stable, you can mark it as experimental. // just set true for experimental or false for stable. var experimental = new Array(false, - false, false, false, false, false, false, false, false, false, false); // add the description for your module. The description is displayed in a PopUp-window. -var moduleDescriptions = new Array("This colormap represents the original diffusion acquisition that was used as input for tractography.", - "This T1-weighted image was aquired during the same imaging session as the diffusion image. It is roughly aligned with the diffusion image and provides additional, complementary information.", - "This dataset contains all fibers that were found by the global tractography approach. It can serve as a background for better orientation in the 3D view.", - "This dataset contains the Cingulum fibers and most important regions of interest that were used to extract it.", - "This dataset contains the Corpus Callosum fibers and most important regions of interest that were used to extract it.", - "This dataset contains the Corticospinal Tract fibers and most important regions of interest that were used to extract it.", - "This dataset contains the Fornix fibers and most important regions of interest that were used to extract it.", - "This dataset contains the Inferior Longitudinal Fasciculus, Inferior Fronto-Occipital Fasciculus, and the Uncinate Fasciculus fibers and most important regions of interest that were used to extract it.", - "This dataset contains the Superior Longitudinal Fasciculus, Superior Occipito-Frontal Fasciculus, and Arcuate Fasciculus fibers and most important regions of interest that were used to extract it.", - "This dataset is not in the same world coordinate system as the others and should not be opened in combination with any of the other datasets. It contains a 3D visualization of the cerebellum and the Inferior Cerebellar Peduncles, Medial Cerebellar Peduncle, Superior Cerebellar Peduncles, and Medial Lemniscus fibers and the and most important regions of interest that were used to extract it.", +var moduleDescriptions = new Array("'Dicom Import' supports direct import of Siemens diffusion weighted DICOM files.", + "'Preprocessing & Reconstruction' lets you estimate diffusion tensors or q-balls using different reconstruction methods. It also includes an ODF-details view and preprocessing steps like gradient avaraging, baseline image extraction, and binary mask estimation.", + "'Quantification' calculates scalar indices (FA, GFA, ...) and allows ROI-analysis in 2D or 3D. The Partial Volume Analysis view provides a very robust method for semi-automatic ROI analysis. It uses EM clustering to probabilistically segment fiber vs. non-fiber vs. partial volume.", + "'Tractography' implements a global yet computationally efficient tracking algorithm (gibbs-tracking). In addition it provides a stochastic tractography method. The fiber bundle operations view allows for extraction, join, and substraction of bundles. It also generates a variety of images from given fiber tracts.", + "'TBSS' does *not* reimplement the original Tract Based Spatial Statistics method available in FLS. Aim of this module is to read TBSS output and provides means to interactively explore and evaluate the datasets.", + "'Connectomics' aims at building graphs (nodes and edges) from a global tractogram and applying graph theory for data analysis. fMRI-data might be incorporated in future.", + "'IVIM' stands for Intravoxel Incoherent Motion. The technique allows for the estimation of tissue perfusion on basis of diffusion measurements. Several models are supported by this module. Interactive exploration of the data is supported.", + "'Volume Visualization' provides easy to use and fast volume rendering of images. Transfer-functions can be loaded, saved, and adapted interactively.", + "'Screenshots & Movies' provides means to capture high resolution screenshots as well as movies of the 3D sceen.", "Open the MITK website in an external browser."); var bttns = new Array(); var d = document, da = d.all; // holds id of current mouseover-HTML-element var currentTarget; // get the id of current mouseover-HTML-element d.onmouseover = function(o){ var e = da ? event.srcElement : o.target; currentTarget = e.id; } // build-function called by onload-event in HTML-document function createButtons(){ for (i=0; i < moduleNames.length; i++){ bttns[i] = new Button(moduleNames[i],moduleLinks[i], picFilenames[i], aniFilenames[i],moduleDescriptions[i]); bttns[i].createButton(); } for (i=0; i < moduleNames.length; i++){ if(experimental[i]){ setExperimental(i); } } createClearFloat(); } // Class Button function Button(moduleName, moduleLink, picFilename, aniFilename, moduleDescr){ // Properties this.bttnID = "bttn" + moduleName; this.modName = moduleName; this.modLink = moduleLink; this.picPath = "pics/" + picFilename; this.aniPath = "pics/" + aniFilename; this.modDescr = moduleDescr; // Methods this.createButton = function(){ // get DIV-wrapper for Button and append it to HTML-document bttnWrapper = this.createWrapper(); document.getElementById("bttnField").appendChild(bttnWrapper); // get link-element for picture and append it to DIV-wrapper bttnPicLink = this.createPicLink(); bttnWrapper.appendChild(bttnPicLink); // set HTML attributes for button-element bttn = document.createElement("img"); bttn.src = this.picPath; bttn.id = this.bttnID; bttn.className = "modBttn"; bttn.height = 123; bttn.width = 136; bttn.onmouseover = function(){startAni(this.id);}; bttn.onmouseout = function(){stopAni(this.id);}; // append button to link-element bttnPicLink.appendChild(bttn); // create text-link and add it to DIV-wrapper bttnTxtLink = document.createElement("a"); bttnTxtLink.href = this.modLink; bttnTxtLink.className = "txtLink"; bttnTxtLink.appendChild(document.createTextNode(this.modName)); bttnWrapper.appendChild(bttnTxtLink); // create pop-up link for module description bttnPopUpLink = document.createElement("a"); modName = this.modName; modDescr = this.modDescr; bttnPopUpLink.onclick = function(){showPopUpWindow();}; bttnPopUpLink.className = "popUpLink"; bttnPopUpLink.id = "popup" + this.modName; bttnPopUpLink.appendChild(document.createTextNode("more info >>")); bttnWrapper.appendChild(document.createElement("br")); bttnWrapper.appendChild(bttnPopUpLink); return bttn; } this.createWrapper = function(){ bttnWrapper = document.createElement("div"); bttnWrapper.id = "wrapper" + this.modName; bttnWrapper.className = "bttnWrap"; return bttnWrapper; } this.createPicLink = function(){ picLink = document.createElement("a"); picLink.href = this.modLink; picLink.id = "link" + this.modName; return picLink; } } function showPopUpWindow(){ // modules position in array? modulePos = getPos(currentTarget,"popup"); // get reference to anchor-element in HTML-document popUpAnchor = document.getElementById("popupAnchor"); // check if a popUp is open if(popUpAnchor.hasChildNodes()){ // if a popUp is open, remove it! popUpAnchor.removeChild(document.getElementById("popup")); } // create new container for popUp container = document.createElement("div"); container.id = "popup"; container.align = "right"; // append popUp-container to HTML-document popUpAnchor.appendChild(container); // create close-button and append it to popUp-container bttnClose = document.createElement("img"); bttnClose.src = "pics/popup_bttn_close.png"; bttnClose.id = "bttnClose"; bttnClose.onclick = function(){closeInfoWindow();}; container.appendChild(bttnClose); // create container for content-elements contHeadline = document.createElement("div"); contHeadline.id = "contHeadline"; contDescription = document.createElement("div"); contDescription.id = "contDescription"; contModLink = document.createElement("div"); contModLink.id = "contModLink"; // append content-container to popUp-container container.appendChild(contHeadline); container.appendChild(contDescription); container.appendChild(contModLink); // create text-elements with content headline = document.createTextNode(moduleNames[modulePos] + " "); description = document.createTextNode(moduleDescriptions[modulePos]); moduleLink = document.createElement("a"); moduleLink.href = moduleLinks[modulePos] ; moduleLink.className = 'moduleLink'; - moduleLinkTxt = document.createTextNode("Click here to open the " + moduleNames[modulePos].toLowerCase() + " dataset"); + moduleLinkTxt = document.createTextNode("Click here to open '" + moduleNames[modulePos].toLowerCase() + "'"); moduleLink.appendChild(moduleLinkTxt); // append text-elements to their container contHeadline.appendChild(headline); contDescription.appendChild(description); contModLink.appendChild(moduleLink); } function getPos(id,prefix){ if(prefix == "popup"){ targetID = id.slice(5); }else{ if(prefix == "bttn"){ targetID = id.slice(4); } } for(i=0; i < moduleNames.length; i++ ){ if(moduleNames[i] == targetID){ return i; } } } function setExperimental(modPos){ linkID = "link" + moduleNames[modPos]; expPic = document.createElement("img"); expPic.src = "pics/experimental.png"; expPic.className = "expPic"; //alert(bttns[modPos].bttnID); expPic.onmouseover = function(){startAni(bttns[modPos].bttnID);changeToHover(bttns[modPos].bttnID);}; expPic.onmouseout = function(){stopAni(bttns[modPos].bttnID);changeToNormal(bttns[modPos].bttnID);}; document.getElementById(linkID).appendChild(expPic); } function changeToHover(targetId){ bttn = document.getElementById(targetId); bttn.className = "modBttnHover"; } function changeToNormal(targetId){ bttn = document.getElementById(targetId); bttn.className = "modBttn"; } // function to close PopUp-window function closeInfoWindow(){ popUpAnchor = document.getElementById("popupAnchor"); popUpAnchor.removeChild(document.getElementById("popup")); } function createClearFloat(){ cf = document.createElement("div"); cf.className = "clearfloat"; document.getElementById("bttnField").appendChild(cf); } startAni = function(targetId){ modulePos = getPos(targetId,"bttn"); if(aniFilenames[modulePos] != ''){ bttn = document.getElementById(targetId); bttn.src = "pics/" + aniFilenames[modulePos]; } } stopAni = function(targetId){ modulePos = getPos(targetId,"bttn"); bttn = document.getElementById(targetId); bttn.src = "pics/" + picFilenames[modulePos]; } diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/01CING.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/01CING.png deleted file mode 100644 index ace6381849..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/01CING.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/01aCING.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/01aCING.png deleted file mode 100644 index 9ed520200a..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/01aCING.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/01adicomimport.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/01adicomimport.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/01dicomimport.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/01dicomimport.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/02CORPUS.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/02CORPUS.png deleted file mode 100644 index 64c1f4ddcb..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/02CORPUS.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/02aCORPUS.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/02aCORPUS.png deleted file mode 100644 index 484095abce..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/02aCORPUS.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/02apreprocessingreconstruction.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/02apreprocessingreconstruction.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/02preprocessingreconstruction.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/02preprocessingreconstruction.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/03CST.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/03CST.png deleted file mode 100644 index d322f6a8ec..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/03CST.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/03aCST.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/03aCST.png deleted file mode 100644 index 16d5296b12..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/03aCST.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/03aquantification.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/03aquantification.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/03quantification.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/03quantification.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/04FORNIX.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/04FORNIX.png deleted file mode 100644 index d111d85f1e..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/04FORNIX.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/04aFORNIX.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/04aFORNIX.png deleted file mode 100644 index 7abf26080a..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/04aFORNIX.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/04atractography.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/04atractography.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/04tractography.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/04tractography.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/05ILF+IFO+UNCUS.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/05ILF+IFO+UNCUS.png deleted file mode 100644 index 2cf33842c6..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/05ILF+IFO+UNCUS.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/05aILF+IFO+UNCUS.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/05aILF+IFO+UNCUS.png deleted file mode 100644 index ef0287c138..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/05aILF+IFO+UNCUS.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/05atbss.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/05atbss.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/05tbss.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/05tbss.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/06SLF+SOFF+ARCUATE.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/06SLF+SOFF+ARCUATE.png deleted file mode 100644 index 92a6c731ba..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/06SLF+SOFF+ARCUATE.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/06aSLF+SOFF+ARCUATE.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/06aSLF+SOFF+ARCUATE.png deleted file mode 100644 index 142312c98d..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/06aSLF+SOFF+ARCUATE.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/06aconnectomics.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/06aconnectomics.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/06connectomics.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/06connectomics.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/07PEDUNCLES.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/07PEDUNCLES.png deleted file mode 100644 index 2ca7f6192c..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/07PEDUNCLES.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/07aPEDUNCLES.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/07aPEDUNCLES.png deleted file mode 100644 index a6b02a7578..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/07aPEDUNCLES.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/07aivim.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/07aivim.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/07ivim.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/07ivim.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/08avolumevisualization.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/08avolumevisualization.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/08volumevisualization.png similarity index 100% copy from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png copy to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/08volumevisualization.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/09ascreenshotsmovies.png similarity index 100% rename from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aaref_alltracts.png rename to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/09ascreenshotsmovies.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/09screenshotsmovies.png similarity index 100% rename from Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0aref_alltracts.png rename to Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/09screenshotsmovies.png diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0bref_colormap.gif b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0bref_colormap.gif deleted file mode 100644 index ac374c6888..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0bref_colormap.gif and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0bref_colormap.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0bref_colormap.png deleted file mode 100644 index 4915331758..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0bref_colormap.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0cref_t1.gif b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0cref_t1.gif deleted file mode 100644 index 76c0121dea..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0cref_t1.gif and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0cref_t1.png b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0cref_t1.png deleted file mode 100644 index 341fe0b49a..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/0cref_t1.png and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/dti.jpg b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/dti.jpg deleted file mode 100644 index 2a368ea235..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/dti.jpg and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/dti_animated.gif b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/dti_animated.gif deleted file mode 100644 index dcfd99498d..0000000000 Binary files a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/resources/welcome/pics/dti_animated.gif and /dev/null differ diff --git a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/src/internal/QmitkDIAppQuantificationPerspective.cpp b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/src/internal/QmitkDIAppQuantificationPerspective.cpp index 2c51a0bbbe..a29bed1fc9 100644 --- a/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/src/internal/QmitkDIAppQuantificationPerspective.cpp +++ b/Modules/Bundles/org.mitk.gui.qt.diffusionimagingapp/src/internal/QmitkDIAppQuantificationPerspective.cpp @@ -1,73 +1,73 @@ /*========================================================================= Program: BlueBerry Platform Language: C++ Date: $Date: 2009-10-23 02:59:36 +0200 (Fr, 23 Okt 2009) $ Version: $Revision: 19652 $ Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. See MITKCopyright.txt or http://www.mitk.org/copyright.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notices for more information. =========================================================================*/ #include "QmitkDIAppQuantificationPerspective.h" #include "berryIViewLayout.h" void QmitkDIAppQuantificationPerspective::CreateInitialLayout(berry::IPageLayout::Pointer layout) { ///////////////////////////////////////////////////// // all di-app perspectives should have the following: ///////////////////////////////////////////////////// std::string editorArea = layout->GetEditorArea(); layout->AddStandaloneView("org.mitk.views.datamanager", false, berry::IPageLayout::LEFT, 0.3f, editorArea); layout->AddStandaloneView("org.mitk.views.controlvisualizationpropertiesview", false, berry::IPageLayout::BOTTOM, .2f, "org.mitk.views.datamanager"); berry::IFolderLayout::Pointer left = layout->CreateFolder("org.mitk.diffusionimaginginternal.leftcontrols", berry::IPageLayout::BOTTOM, 0.15f, "org.mitk.views.controlvisualizationpropertiesview"); layout->AddStandaloneView("org.mitk.views.imagenavigator", false, berry::IPageLayout::BOTTOM, .4f, "org.mitk.diffusionimaginginternal.leftcontrols"); left->AddView("org.mitk.views.masterview"); berry::IViewLayout::Pointer lo = layout->GetViewLayout("org.mitk.views.masterview"); lo->SetCloseable(false); berry::IFolderLayout::Pointer right = layout->CreateFolder("org.mitk.diffusionimaginginternal.rightcontrols", berry::IPageLayout::RIGHT, 0.5f, editorArea); ///////////////////////////////////////////// // here goes the perspective specific stuff ///////////////////////////////////////////// right->AddView("org.mitk.views.segmentation"); lo = layout->GetViewLayout("org.mitk.views.segmentation"); lo->SetCloseable(false); - right->AddView("org.mitk.views.partialvolumeanalysis"); - lo = layout->GetViewLayout("org.mitk.views.partialvolumeanalysis"); + right->AddView("org.mitk.views.partialvolumeanalysisview"); + lo = layout->GetViewLayout("org.mitk.views.partialvolumeanalysisview"); lo->SetCloseable(false); right->AddView("org.mitk.views.diffusionquantification"); lo = layout->GetViewLayout("org.mitk.views.diffusionquantification"); lo->SetCloseable(false); right->AddView("org.mitk.views.measurement"); lo = layout->GetViewLayout("org.mitk.views.measurement"); lo->SetCloseable(false); right->AddView("org.mitk.views.imagestatistics"); lo = layout->GetViewLayout("org.mitk.views.imagestatistics"); lo->SetCloseable(false); }