diff --git a/Modules/SegmentationUI/Qmitk/QmitkToolGUI.cpp b/Modules/SegmentationUI/Qmitk/QmitkToolGUI.cpp index 4cf5e9e968..0b87a9a734 100644 --- a/Modules/SegmentationUI/Qmitk/QmitkToolGUI.cpp +++ b/Modules/SegmentationUI/Qmitk/QmitkToolGUI.cpp @@ -1,42 +1,47 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkToolGUI.h" #include QmitkToolGUI::~QmitkToolGUI() { m_ReferenceCount = 0; // otherwise ITK will complain in LightObject's destructor } void QmitkToolGUI::Register() const { // empty on purpose, just don't let ITK handle calls to Register() } void QmitkToolGUI::UnRegister() const ITK_NOEXCEPT { // empty on purpose, just don't let ITK handle calls to UnRegister() } void QmitkToolGUI::SetReferenceCount(int) { // empty on purpose, just don't let ITK handle calls to SetReferenceCount() } void QmitkToolGUI::SetTool(mitk::Tool *tool) { m_Tool = tool; emit(NewToolAssociated(tool)); } + +bool QmitkToolGUI::ConfirmExit() +{ + return true; +} diff --git a/Modules/SegmentationUI/Qmitk/QmitkToolGUI.h b/Modules/SegmentationUI/Qmitk/QmitkToolGUI.h index f47df87bc5..fa55575dc0 100644 --- a/Modules/SegmentationUI/Qmitk/QmitkToolGUI.h +++ b/Modules/SegmentationUI/Qmitk/QmitkToolGUI.h @@ -1,59 +1,60 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkToolGUI_h #define QmitkToolGUI_h #include #include #include "mitkCommon.h" #include "mitkTool.h" /** \brief Base class for GUIs belonging to mitk::Tool classes. \ingroup org_mitk_gui_qt_interactivesegmentation Created through ITK object factory. TODO May be changed to a toolkit specific way later? Last contributor: $Author$ */ class MITKSEGMENTATIONUI_EXPORT QmitkToolGUI : public QWidget, public itk::Object { Q_OBJECT public: mitkClassMacroItkParent(QmitkToolGUI, itk::Object); void SetTool(mitk::Tool *tool); // just make sure ITK won't take care of anything (especially not destruction) void Register() const override; void UnRegister() const ITK_NOEXCEPT ITK_OVERRIDE; void SetReferenceCount(int) override; ~QmitkToolGUI() override; + virtual bool ConfirmExit(); signals: void NewToolAssociated(mitk::Tool *); protected: QmitkToolGUI() = default; mitk::Tool::Pointer m_Tool; virtual void BusyStateChanged(bool){}; }; #endif diff --git a/Modules/SegmentationUI/Qmitk/QmitkToolSelectionBox.cpp b/Modules/SegmentationUI/Qmitk/QmitkToolSelectionBox.cpp index 995433d58e..4aa348ee9f 100755 --- a/Modules/SegmentationUI/Qmitk/QmitkToolSelectionBox.cpp +++ b/Modules/SegmentationUI/Qmitk/QmitkToolSelectionBox.cpp @@ -1,623 +1,627 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ //#define MBILOG_ENABLE_DEBUG 1 #include #include "QmitkToolSelectionBox.h" #include "QmitkToolGUI.h" #include "mitkBaseRenderer.h" #include #include #include #include #include #include #include #include #include "usModuleResource.h" #include "usModuleResourceStream.h" #include "mitkToolManagerProvider.h" QmitkToolSelectionBox::QmitkToolSelectionBox(QWidget *parent, mitk::DataStorage *) : QWidget(parent), m_SelfCall(false), m_DisplayedGroups("default"), m_LayoutColumns(2), m_ShowNames(true), m_GenerateAccelerators(false), m_ToolGUIWidget(nullptr), m_LastToolGUI(nullptr), m_ToolButtonGroup(nullptr), m_ButtonLayout(nullptr) { QFont currentFont = QWidget::font(); currentFont.setBold(true); QWidget::setFont(currentFont); m_ToolManager = mitk::ToolManagerProvider::GetInstance()->GetToolManager(); // QButtonGroup m_ToolButtonGroup = new QButtonGroup(this); // some features of QButtonGroup m_ToolButtonGroup->setExclusive(false); // mutually exclusive toggle buttons RecreateButtons(); QWidget::setContentsMargins(0, 0, 0, 0); if (layout() != nullptr) { layout()->setContentsMargins(0, 0, 0, 0); } // reactions to signals connect(m_ToolButtonGroup, &QButtonGroup::idClicked, this, &QmitkToolSelectionBox::toolButtonClicked); // reactions to ToolManager events m_ToolManager->ActiveToolChanged += mitk::MessageDelegate(this, &QmitkToolSelectionBox::OnToolManagerToolModified); m_ToolManager->ReferenceDataChanged += mitk::MessageDelegate(this, &QmitkToolSelectionBox::OnToolManagerReferenceDataModified); m_ToolManager->WorkingDataChanged += mitk::MessageDelegate(this, &QmitkToolSelectionBox::OnToolManagerWorkingDataModified); // show active tool SetOrUnsetButtonForActiveTool(); QWidget::setEnabled(false); } QmitkToolSelectionBox::~QmitkToolSelectionBox() { m_ToolManager->ActiveToolChanged -= mitk::MessageDelegate(this, &QmitkToolSelectionBox::OnToolManagerToolModified); m_ToolManager->ReferenceDataChanged -= mitk::MessageDelegate(this, &QmitkToolSelectionBox::OnToolManagerReferenceDataModified); m_ToolManager->WorkingDataChanged -= mitk::MessageDelegate(this, &QmitkToolSelectionBox::OnToolManagerWorkingDataModified); } mitk::ToolManager *QmitkToolSelectionBox::GetToolManager() { return m_ToolManager; } void QmitkToolSelectionBox::SetToolManager( mitk::ToolManager &newManager) // no nullptr pointer allowed here, a manager is required { // say bye to the old manager m_ToolManager->ActiveToolChanged -= mitk::MessageDelegate(this, &QmitkToolSelectionBox::OnToolManagerToolModified); m_ToolManager->ReferenceDataChanged -= mitk::MessageDelegate(this, &QmitkToolSelectionBox::OnToolManagerReferenceDataModified); m_ToolManager->WorkingDataChanged -= mitk::MessageDelegate(this, &QmitkToolSelectionBox::OnToolManagerWorkingDataModified); if (QWidget::isEnabled()) { m_ToolManager->UnregisterClient(); } m_ToolManager = &newManager; RecreateButtons(); // greet the new one m_ToolManager->ActiveToolChanged += mitk::MessageDelegate(this, &QmitkToolSelectionBox::OnToolManagerToolModified); m_ToolManager->ReferenceDataChanged += mitk::MessageDelegate(this, &QmitkToolSelectionBox::OnToolManagerReferenceDataModified); m_ToolManager->WorkingDataChanged += mitk::MessageDelegate(this, &QmitkToolSelectionBox::OnToolManagerWorkingDataModified); if (QWidget::isEnabled()) { m_ToolManager->RegisterClient(); } // ask the new one what the situation is like SetOrUnsetButtonForActiveTool(); } void QmitkToolSelectionBox::toolButtonClicked(int id) { if (!QWidget::isEnabled()) return; // this method could be triggered from the constructor, when we are still disabled MITK_DEBUG << "toolButtonClicked(" << id << "): id translates to tool ID " << m_ToolIDForButtonID[id]; - + if (m_LastToolGUI && !m_LastToolGUI->ConfirmExit()) + { + return; + } + QToolButton *toolButton = dynamic_cast(m_ToolButtonGroup->buttons().at(id)); if (toolButton) { if ((m_ButtonIDForToolID.find(m_ToolManager->GetActiveToolID()) != m_ButtonIDForToolID.end()) // if we have this tool in our box && (m_ButtonIDForToolID[m_ToolManager->GetActiveToolID()] == id)) // the tool corresponding to this button is already active { // disable this button, disable all tools toolButton->setChecked(false); m_ToolManager->ActivateTool(-1); // disable everything } else { // enable the corresponding tool m_SelfCall = true; m_ToolManager->ActivateTool(m_ToolIDForButtonID[id]); m_SelfCall = false; } } } void QmitkToolSelectionBox::OnToolManagerToolModified() { SetOrUnsetButtonForActiveTool(); } void QmitkToolSelectionBox::SetOrUnsetButtonForActiveTool() { // we want to emit a signal in any case, whether we selected ourselves or somebody else changes "our" tool manager. // --> emit before check on m_SelfCall int id = m_ToolManager->GetActiveToolID(); // don't emit signal for shape model tools bool emitSignal = true; mitk::Tool *tool = m_ToolManager->GetActiveTool(); if (tool && std::string(tool->GetGroup()) == "organ_segmentation") emitSignal = false; if (emitSignal) emit ToolSelected(id); // delete old GUI (if any) if (m_LastToolGUI && m_ToolGUIWidget) { if (m_ToolGUIWidget->layout()) { m_ToolGUIWidget->layout()->removeWidget(m_LastToolGUI); } m_LastToolGUI->setParent(nullptr); delete m_LastToolGUI; // will hopefully notify parent and layouts m_LastToolGUI = nullptr; QLayout *layout = m_ToolGUIWidget->layout(); if (layout) { layout->activate(); } } QToolButton *toolButton(nullptr); if (m_ButtonIDForToolID.find(id) != m_ButtonIDForToolID.end()) // if this tool is in our box { toolButton = dynamic_cast(m_ToolButtonGroup->buttons().at(m_ButtonIDForToolID[id])); } if (toolButton) { // mmueller // uncheck all other buttons QAbstractButton *tmpBtn = nullptr; for (int i = 0; i < m_ToolButtonGroup->buttons().size(); ++i) { tmpBtn = m_ToolButtonGroup->buttons().at(i); if (tmpBtn != toolButton) dynamic_cast(tmpBtn)->setChecked(false); } toolButton->setChecked(true); if (m_ToolGUIWidget && tool) { // create and reparent new GUI (if any) itk::Object::Pointer possibleGUI = tool->GetGUI("Qmitk", "GUI").GetPointer(); // prefix and postfix if (possibleGUI.IsNull()) possibleGUI = tool->GetGUI("", "GUI").GetPointer(); QmitkToolGUI *gui = dynamic_cast(possibleGUI.GetPointer()); //! m_LastToolGUI = gui; if (gui) { gui->SetTool(tool); gui->setParent(m_ToolGUIWidget); gui->move(gui->geometry().topLeft()); gui->show(); QLayout *layout = m_ToolGUIWidget->layout(); if (!layout) { layout = new QVBoxLayout(m_ToolGUIWidget); } if (layout) { layout->addWidget(gui); layout->activate(); } } } } else { // disable all buttons QToolButton *selectedToolButton = dynamic_cast(m_ToolButtonGroup->checkedButton()); if (selectedToolButton) { selectedToolButton->setChecked(false); } } } void QmitkToolSelectionBox::OnToolManagerReferenceDataModified() { if (m_SelfCall) return; MITK_DEBUG << "OnToolManagerReferenceDataModified()"; this->UpdateButtonsEnabledState(); } void QmitkToolSelectionBox::OnToolManagerWorkingDataModified() { if (m_SelfCall) return; MITK_DEBUG << "OnToolManagerWorkingDataModified()"; this->UpdateButtonsEnabledState(); } void QmitkToolSelectionBox::setEnabled(bool enable) { if (QWidget::isEnabled() == enable) return; QWidget::setEnabled(enable); if (enable) { m_ToolManager->RegisterClient(); auto id = m_ToolManager->GetActiveToolID(); emit ToolSelected(id); } else { m_ToolManager->ActivateTool(-1); m_ToolManager->UnregisterClient(); emit ToolSelected(-1); } } void QmitkToolSelectionBox::UpdateButtonsEnabledState() { auto buttons = m_ToolButtonGroup->buttons(); const auto refDataNode = m_ToolManager->GetReferenceData(0); const mitk::BaseData* refData = nullptr; if (nullptr != refDataNode) { refData = refDataNode->GetData(); } const auto workingDataNode = m_ToolManager->GetWorkingData(0); const mitk::BaseData* workingData = nullptr; if (nullptr != workingDataNode) { workingData = workingDataNode->GetData(); } for (const auto& button : std::as_const(buttons)) { const auto buttonID = m_ToolButtonGroup->id(button); const auto toolID = m_ToolIDForButtonID[buttonID]; const auto tool = m_ToolManager->GetToolById(toolID); button->setEnabled(tool->CanHandle(refData, workingData)); } } void QmitkToolSelectionBox::RecreateButtons() { if (m_ToolManager.IsNull()) return; QList l = m_ToolButtonGroup->buttons(); // remove all buttons that are there QList::iterator it; QAbstractButton *btn; for (it = l.begin(); it != l.end(); ++it) { btn = *it; m_ToolButtonGroup->removeButton(btn); delete btn; } mitk::ToolManager::ToolVectorTypeConst allPossibleTools = m_ToolManager->GetTools(); mitk::ToolManager::ToolVectorTypeConst allTools; typedef std::pair SortPairType; typedef std::priority_queue SortedToolQueueType; SortedToolQueueType toolPositions; // clear and sort all tools // step one: find name/group of all tools in m_DisplayedGroups string. remember these positions for all tools. for (mitk::ToolManager::ToolVectorTypeConst::const_iterator iter = allPossibleTools.begin(); iter != allPossibleTools.end(); ++iter) { const mitk::Tool *tool = *iter; std::string::size_type namePos = m_DisplayedGroups.find(std::string("'") + tool->GetName() + "'"); std::string::size_type groupPos = m_DisplayedGroups.find(std::string("'") + tool->GetGroup() + "'"); if (!m_DisplayedGroups.empty() && namePos == std::string::npos && groupPos == std::string::npos) continue; // skip if (m_DisplayedGroups.empty() && std::string(tool->GetName()).length() > 0) { namePos = static_cast(tool->GetName()[0]); } SortPairType thisPair = std::make_pair(namePos < groupPos ? namePos : groupPos, *iter); toolPositions.push(thisPair); } // step two: sort tools according to previously found positions in m_DisplayedGroups MITK_DEBUG << "Sorting order of tools (lower number --> earlier in button group)"; while (!toolPositions.empty()) { SortPairType thisPair = toolPositions.top(); MITK_DEBUG << "Position " << thisPair.first << " : " << thisPair.second->GetName(); allTools.push_back(thisPair.second); toolPositions.pop(); } std::reverse(allTools.begin(), allTools.end()); MITK_DEBUG << "Sorted tools:"; for (mitk::ToolManager::ToolVectorTypeConst::const_iterator iter = allTools.begin(); iter != allTools.end(); ++iter) { MITK_DEBUG << (*iter)->GetName(); } if (m_ButtonLayout == nullptr) m_ButtonLayout = new QGridLayout; int row(0); int column(-1); int currentButtonID(0); m_ButtonIDForToolID.clear(); m_ToolIDForButtonID.clear(); QToolButton *button = nullptr; MITK_DEBUG << "Creating buttons for tools"; // fill group box with buttons for (mitk::ToolManager::ToolVectorTypeConst::const_iterator iter = allTools.begin(); iter != allTools.end(); ++iter) { const mitk::Tool *tool = *iter; int currentToolID(m_ToolManager->GetToolID(tool)); ++column; // new line if we are at the maximum columns if (column == m_LayoutColumns) { ++row; column = 0; } button = new QToolButton; button->setSizePolicy(QSizePolicy(QSizePolicy::Minimum, QSizePolicy::Minimum)); // add new button to the group MITK_DEBUG << "Adding button with ID " << currentToolID; m_ToolButtonGroup->addButton(button, currentButtonID); // ... and to the layout MITK_DEBUG << "Adding button in row/column " << row << "/" << column; m_ButtonLayout->addWidget(button, row, column); if (m_LayoutColumns == 1) { button->setToolButtonStyle(Qt::ToolButtonTextBesideIcon); } else { button->setToolButtonStyle(Qt::ToolButtonTextUnderIcon); } button->setCheckable(true); if (currentToolID == m_ToolManager->GetActiveToolID()) button->setChecked(true); QString label; if (m_GenerateAccelerators) { label += "&"; } label += tool->GetName(); QString tooltip = tool->GetName(); MITK_DEBUG << tool->GetName() << ", " << label.toLocal8Bit().constData() << ", '" << tooltip.toLocal8Bit().constData(); if (m_ShowNames) { button->setText(label); // a label button->setToolTip(tooltip); QFont currentFont = button->font(); currentFont.setBold(false); button->setFont(currentFont); } us::ModuleResource iconResource = tool->GetIconResource(); if (!iconResource.IsValid()) { button->setIcon(QIcon(QPixmap(tool->GetXPM()))); } else { auto isSVG = "svg" == iconResource.GetSuffix(); auto openmode = isSVG ? std::ios_base::in : std::ios_base::binary; us::ModuleResourceStream resourceStream(iconResource, openmode); resourceStream.seekg(0, std::ios::end); std::ios::pos_type length = resourceStream.tellg(); resourceStream.seekg(0, std::ios::beg); char *data = new char[length]; resourceStream.read(data, length); if (isSVG) { button->setIcon(QmitkStyleManager::ThemeIcon(QByteArray::fromRawData(data, length))); } else { QPixmap pixmap; pixmap.loadFromData(QByteArray::fromRawData(data, length)); button->setIcon(QIcon(pixmap)); } delete[] data; if (m_ShowNames) { if (m_LayoutColumns == 1) button->setToolButtonStyle(Qt::ToolButtonTextBesideIcon); else button->setToolButtonStyle(Qt::ToolButtonTextUnderIcon); button->setIconSize(QSize(24, 24)); } else { button->setToolButtonStyle(Qt::ToolButtonIconOnly); button->setIconSize(QSize(32, 32)); button->setToolTip(tooltip); } } if (m_GenerateAccelerators) { QString firstLetter = QString(tool->GetName()); firstLetter.truncate(1); button->setShortcut( firstLetter); // a keyboard shortcut (just the first letter of the given name w/o any CTRL or something) } m_ButtonIDForToolID[currentToolID] = currentButtonID; m_ToolIDForButtonID[currentButtonID] = currentToolID; MITK_DEBUG << "m_ButtonIDForToolID[" << currentToolID << "] == " << currentButtonID; MITK_DEBUG << "m_ToolIDForButtonID[" << currentButtonID << "] == " << currentToolID; tool->GUIProcessEventsMessage += mitk::MessageDelegate( this, &QmitkToolSelectionBox::OnToolGUIProcessEventsMessage); // will never add a listener twice, so we don't have // to check here tool->ErrorMessage += mitk::MessageDelegate1( this, &QmitkToolSelectionBox::OnToolErrorMessage); // will never add a listener twice, so we don't have to check here tool->GeneralMessage += mitk::MessageDelegate1(this, &QmitkToolSelectionBox::OnGeneralToolMessage); ++currentButtonID; } // setting grid layout for this groupbox this->setLayout(m_ButtonLayout); this->UpdateButtonsEnabledState(); // this->update(); } void QmitkToolSelectionBox::OnToolGUIProcessEventsMessage() { qApp->processEvents(); } void QmitkToolSelectionBox::OnToolErrorMessage(std::string s) { QMessageBox::critical( this, "MITK", QString(s.c_str()), QMessageBox::Ok | QMessageBox::NoButton, QMessageBox::NoButton); } void QmitkToolSelectionBox::OnGeneralToolMessage(std::string s) { QMessageBox::information( this, "MITK", QString(s.c_str()), QMessageBox::Ok | QMessageBox::NoButton, QMessageBox::NoButton); } void QmitkToolSelectionBox::SetDisplayedToolGroups(const std::string &toolGroups) { if (m_DisplayedGroups != toolGroups) { QString q_DisplayedGroups = toolGroups.c_str(); // quote all unquoted single words q_DisplayedGroups = q_DisplayedGroups.replace(QRegularExpression("\\b(\\w+)\\b|'([^']+)'"), "'\\1\\2'"); MITK_DEBUG << "m_DisplayedGroups was \"" << toolGroups << "\""; m_DisplayedGroups = q_DisplayedGroups.toLocal8Bit().constData(); MITK_DEBUG << "m_DisplayedGroups is \"" << m_DisplayedGroups << "\""; RecreateButtons(); SetOrUnsetButtonForActiveTool(); } } void QmitkToolSelectionBox::SetLayoutColumns(int columns) { if (columns > 0 && columns != m_LayoutColumns) { m_LayoutColumns = columns; RecreateButtons(); } } void QmitkToolSelectionBox::SetShowNames(bool show) { if (show != m_ShowNames) { m_ShowNames = show; RecreateButtons(); } } void QmitkToolSelectionBox::SetGenerateAccelerators(bool accel) { if (accel != m_GenerateAccelerators) { m_GenerateAccelerators = accel; RecreateButtons(); } } void QmitkToolSelectionBox::SetToolGUIArea(QWidget *parentWidget) { m_ToolGUIWidget = parentWidget; } diff --git a/Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.cpp b/Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.cpp index 2d2bdb4f75..d36b564780 100644 --- a/Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.cpp +++ b/Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.cpp @@ -1,497 +1,513 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkTotalSegmentatorToolGUI.h" #include "mitkProcessExecutor.h" #include "mitkTotalSegmentatorTool.h" #include #include #include #include #include #include #include MITK_TOOL_GUI_MACRO(MITKSEGMENTATIONUI_EXPORT, QmitkTotalSegmentatorToolGUI, "") QmitkTotalSegmentatorToolGUI::QmitkTotalSegmentatorToolGUI() : QmitkMultiLabelSegWithPreviewToolGUIBase(), m_SuperclassEnableConfirmSegBtnFnc(m_EnableConfirmSegBtnFnc) { // Nvidia-smi command returning zero doesn't always imply lack of GPUs. // Pytorch uses its own libraries to communicate to the GPUs. Hence, only a warning can be given. if (m_GpuLoader.GetGPUCount() == 0) { std::string warning = "WARNING: No GPUs were detected on your machine. The TotalSegmentator tool can be very slow."; this->ShowErrorMessage(warning); } m_EnableConfirmSegBtnFnc = [this](bool enabled) { return !m_FirstPreviewComputation ? m_SuperclassEnableConfirmSegBtnFnc(enabled) : false; }; } void QmitkTotalSegmentatorToolGUI::ConnectNewTool(mitk::SegWithPreviewTool *newTool) { Superclass::ConnectNewTool(newTool); m_FirstPreviewComputation = true; } +bool QmitkTotalSegmentatorToolGUI::ConfirmExit() +{ + if (m_FirstPreviewComputation) + return true; + else if (QMessageBox::Yes == + QMessageBox::question(nullptr, + "TotalSegmentator", + QString("WARNING: There might unconfirmed labels after Preview. Are you sure you want to exit the tool?"), + QMessageBox::Yes | QMessageBox::No, + QMessageBox::No)) + { + return true; + } + return false; +} + void QmitkTotalSegmentatorToolGUI::InitializeUI(QBoxLayout *mainLayout) { m_Controls.setupUi(this); #ifndef _WIN32 m_Controls.sysPythonComboBox->addItem("/usr/bin"); #endif this->AutoParsePythonPaths(); m_Controls.sysPythonComboBox->addItem("Select"); m_Controls.sysPythonComboBox->setCurrentIndex(0); m_Controls.pythonEnvComboBox->addItem("Select"); m_Controls.pythonEnvComboBox->setDuplicatesEnabled(false); m_Controls.pythonEnvComboBox->setDisabled(true); m_Controls.previewButton->setDisabled(true); m_Controls.statusLabel->setTextFormat(Qt::RichText); m_Controls.subtaskComboBox->addItems(VALID_TASKS); QString welcomeText; this->SetGPUInfo(); if (m_GpuLoader.GetGPUCount() != 0) { welcomeText = "STATUS: Welcome to TotalSegmentator tool. You're in luck: " + QString::number(m_GpuLoader.GetGPUCount()) + " GPU(s) were detected."; } else { welcomeText = "STATUS: Welcome to TotalSegmentator tool. Sorry, " + QString::number(m_GpuLoader.GetGPUCount()) + " GPUs were detected."; } connect(m_Controls.previewButton, SIGNAL(clicked()), this, SLOT(OnPreviewBtnClicked())); connect(m_Controls.clearButton, SIGNAL(clicked()), this, SLOT(OnClearInstall())); connect(m_Controls.installButton, SIGNAL(clicked()), this, SLOT(OnInstallBtnClicked())); connect(m_Controls.overrideBox, SIGNAL(stateChanged(int)), this, SLOT(OnOverrideChecked(int))); connect(m_Controls.pythonEnvComboBox, QOverload::of(&QComboBox::activated), [=](int index) { OnPythonPathChanged(m_Controls.pythonEnvComboBox->itemText(index)); }); connect(m_Controls.sysPythonComboBox, QOverload::of(&QComboBox::activated), [=](int index) { OnSystemPythonChanged(m_Controls.sysPythonComboBox->itemText(index)); }); QString lastSelectedPyEnv = m_Settings.value("TotalSeg/LastCustomPythonPath").toString(); if (!lastSelectedPyEnv.isEmpty() && lastSelectedPyEnv!= "Select") { m_Controls.pythonEnvComboBox->insertItem(0, lastSelectedPyEnv); } const QString storageDir = m_Installer.GetVirtualEnvPath(); m_IsInstalled = this->IsTotalSegmentatorInstalled(storageDir); if (m_IsInstalled) { m_PythonPath = QmitkSetupVirtualEnvUtil::GetExactPythonPath(storageDir).first; m_Installer.SetVirtualEnvPath(m_PythonPath); this->EnableAll(m_IsInstalled); welcomeText += " TotalSegmentator is already found installed."; } else { welcomeText += " TotalSegmentator is not installed. Please click on \"Install TotalSegmentator\" above."; } this->WriteStatusMessage(welcomeText); QIcon deleteIcon = QmitkStyleManager::ThemeIcon(QStringLiteral(":/org_mitk_icons/icons/awesome/scalable/actions/edit-delete.svg")); QIcon arrowIcon = QmitkStyleManager::ThemeIcon(QStringLiteral(":/org_mitk_icons/icons/tango/scalable/actions/media-playback-start.svg")); m_Controls.clearButton->setIcon(deleteIcon); m_Controls.previewButton->setIcon(arrowIcon); mainLayout->addLayout(m_Controls.verticalLayout); Superclass::InitializeUI(mainLayout); } void QmitkTotalSegmentatorToolGUI::SetGPUInfo() { std::vector specs = m_GpuLoader.GetAllGPUSpecs(); for (const QmitkGPUSpec &gpuSpec : specs) { m_Controls.gpuComboBox->addItem(QString::number(gpuSpec.id) + ": " + gpuSpec.name + " (" + gpuSpec.memory + ")"); } if (specs.empty()) { m_Controls.gpuComboBox->setEditable(true); m_Controls.gpuComboBox->addItem(QString::number(0)); m_Controls.gpuComboBox->setValidator(new QIntValidator(0, 999, this)); } } unsigned int QmitkTotalSegmentatorToolGUI::FetchSelectedGPUFromUI() const { QString gpuInfo = m_Controls.gpuComboBox->currentText(); if (m_GpuLoader.GetGPUCount() == 0) { return static_cast(gpuInfo.toInt()); } else { QString gpuId = gpuInfo.split(":", Qt::SkipEmptyParts).first(); return static_cast(gpuId.toInt()); } } void QmitkTotalSegmentatorToolGUI::EnableAll(bool isEnable) { m_Controls.previewButton->setEnabled(isEnable); m_Controls.subtaskComboBox->setEnabled(isEnable); m_Controls.installButton->setEnabled((!isEnable)); } void QmitkTotalSegmentatorToolGUI::OnInstallBtnClicked() { bool isInstalled = false; const auto [path, version] = OnSystemPythonChanged(m_Controls.sysPythonComboBox->currentText()); if (path.isEmpty()) { this->WriteErrorMessage("ERROR: Couldn't find compatible Python."); return; } // check if python 3.12 and ask for confirmation if (version.startsWith("3.12") && QMessageBox::No == QMessageBox::question( nullptr, "Installing TotalSegmentator", QString("WARNING: This is an unsupported version of Python that may not work. " "We recommend using a supported Python version between 3.9 and 3.11.\n\n" "Continue anyway?"), QMessageBox::Yes | QMessageBox::No, QMessageBox::No)) { return; } this->WriteStatusMessage("STATUS: Installing TotalSegmentator..."); m_Installer.SetSystemPythonPath(path); isInstalled = m_Installer.SetupVirtualEnv(m_Installer.VENV_NAME); if (isInstalled) { m_PythonPath = QmitkSetupVirtualEnvUtil::GetExactPythonPath(m_Installer.GetVirtualEnvPath()).first; this->WriteStatusMessage("STATUS: Successfully installed TotalSegmentator."); } else { this->WriteErrorMessage("ERROR: Couldn't install TotalSegmentator."); } this->EnableAll(isInstalled); } void QmitkTotalSegmentatorToolGUI::OnPreviewBtnClicked() { auto tool = this->GetConnectedToolAs(); if (nullptr == tool) { return; } try { m_Controls.previewButton->setEnabled(false); qApp->processEvents(); if (!this->IsTotalSegmentatorInstalled(m_PythonPath)) { throw std::runtime_error(WARNING_TOTALSEG_NOT_FOUND); } bool isFast = m_Controls.fastBox->isChecked(); QString subTask = m_Controls.subtaskComboBox->currentText(); if (subTask != VALID_TASKS[0]) { isFast = true; } tool->SetPythonPath(m_PythonPath.toStdString()); tool->SetGpuId(FetchSelectedGPUFromUI()); tool->SetFast(isFast); tool->SetSubTask(subTask.toStdString()); this->WriteStatusMessage(QString("STATUS: Starting Segmentation task... This might take a while.")); tool->UpdatePreview(); m_Controls.previewButton->setEnabled(true); m_FirstPreviewComputation = false; } catch (const std::exception &e) { std::stringstream errorMsg; errorMsg << "STATUS: Error while processing parameters for TotalSegmentator segmentation. Reason: " << e.what(); this->ShowErrorMessage(errorMsg.str()); this->WriteErrorMessage(QString::fromStdString(errorMsg.str())); m_Controls.previewButton->setEnabled(true); return; } catch (...) { std::string errorMsg = "Unkown error occured while generation TotalSegmentator segmentation."; this->ShowErrorMessage(errorMsg); m_Controls.previewButton->setEnabled(true); return; } this->SetLabelSetPreview(tool->GetPreviewSegmentation()); this->ActualizePreviewLabelVisibility(); this->WriteStatusMessage("STATUS: Segmentation task finished successfully."); QString pythonPathTextItem = m_Controls.pythonEnvComboBox->currentText(); if (!pythonPathTextItem.isEmpty() && pythonPathTextItem != "Select") // only cache if the prediction ended without errors. { QString lastSelectedPyEnv = m_Settings.value("TotalSeg/LastCustomPythonPath").toString(); if (lastSelectedPyEnv != pythonPathTextItem) { m_Settings.setValue("TotalSeg/LastCustomPythonPath", pythonPathTextItem); } } } void QmitkTotalSegmentatorToolGUI::ShowErrorMessage(const std::string &message, QMessageBox::Icon icon) { this->setCursor(Qt::ArrowCursor); QMessageBox *messageBox = new QMessageBox(icon, nullptr, message.c_str()); messageBox->exec(); delete messageBox; MITK_WARN << message; } void QmitkTotalSegmentatorToolGUI::WriteStatusMessage(const QString &message) { m_Controls.statusLabel->setText(message); m_Controls.statusLabel->setStyleSheet("font-weight: bold; color: white"); qApp->processEvents(); } void QmitkTotalSegmentatorToolGUI::WriteErrorMessage(const QString &message) { m_Controls.statusLabel->setText(message); m_Controls.statusLabel->setStyleSheet("font-weight: bold; color: red"); qApp->processEvents(); } bool QmitkTotalSegmentatorToolGUI::IsTotalSegmentatorInstalled(const QString &pythonPath) { QString fullPath = pythonPath; bool isPythonExists = false, isExists = false; #ifdef _WIN32 isPythonExists = QFile::exists(fullPath + QDir::separator() + QString("python.exe")); if (!(fullPath.endsWith("Scripts", Qt::CaseInsensitive) || fullPath.endsWith("Scripts/", Qt::CaseInsensitive))) { fullPath += QDir::separator() + QString("Scripts"); isPythonExists = (!isPythonExists) ? QFile::exists(fullPath + QDir::separator() + QString("python.exe")) : isPythonExists; } isExists = QFile::exists(fullPath + QDir::separator() + QString("TotalSegmentator.exe")) && isPythonExists; #else isPythonExists = QFile::exists(fullPath + QDir::separator() + QString("python3")); if (!(fullPath.endsWith("bin", Qt::CaseInsensitive) || fullPath.endsWith("bin/", Qt::CaseInsensitive))) { fullPath += QDir::separator() + QString("bin"); isPythonExists = (!isPythonExists) ? QFile::exists(fullPath + QDir::separator() + QString("python3")) : isPythonExists; } isExists = QFile::exists(fullPath + QDir::separator() + QString("TotalSegmentator")) && isPythonExists; #endif return isExists; } void QmitkTotalSegmentatorToolGUI::AutoParsePythonPaths() { QString homeDir = QDir::homePath(); std::vector searchDirs; #ifdef _WIN32 searchDirs.push_back(QString("C:") + QDir::separator() + QString("ProgramData") + QDir::separator() + QString("anaconda3")); #else // Add search locations for possible standard python paths here searchDirs.push_back(homeDir + QDir::separator() + "environments"); searchDirs.push_back(homeDir + QDir::separator() + "anaconda3"); searchDirs.push_back(homeDir + QDir::separator() + "miniconda3"); searchDirs.push_back(homeDir + QDir::separator() + "opt" + QDir::separator() + "miniconda3"); searchDirs.push_back(homeDir + QDir::separator() + "opt" + QDir::separator() + "anaconda3"); #endif for (QString searchDir : searchDirs) { if (searchDir.endsWith("anaconda3", Qt::CaseInsensitive)) { if (QDir(searchDir).exists()) { m_Controls.sysPythonComboBox->addItem("(base): " + searchDir); searchDir.append((QDir::separator() + QString("envs"))); } } for (QDirIterator subIt(searchDir, QDir::AllDirs, QDirIterator::NoIteratorFlags); subIt.hasNext();) { subIt.next(); QString envName = subIt.fileName(); if (!envName.startsWith('.')) // Filter out irrelevent hidden folders, if any. { m_Controls.pythonEnvComboBox->addItem("(" + envName + "): " + subIt.filePath()); } } } } std::pair QmitkTotalSegmentatorToolGUI::OnSystemPythonChanged(const QString &pyEnv) { std::pair pyPath; if (pyEnv == QString("Select")) { m_Controls.previewButton->setDisabled(true); QString path = QFileDialog::getExistingDirectory(m_Controls.sysPythonComboBox->parentWidget(), "Python Path", "dir"); if (!path.isEmpty()) { this->OnSystemPythonChanged(path); // recall same function for new path validation bool oldState = m_Controls.sysPythonComboBox->blockSignals(true); // block signal firing while inserting item m_Controls.sysPythonComboBox->insertItem(0, path); m_Controls.sysPythonComboBox->setCurrentIndex(0); m_Controls.sysPythonComboBox->blockSignals( oldState); // unblock signal firing after inserting item. Remove this after Qt6 migration } } else { QString uiPyPath = this->GetPythonPathFromUI(pyEnv); pyPath = QmitkSetupVirtualEnvUtil::GetExactPythonPath(uiPyPath); } return pyPath; } void QmitkTotalSegmentatorToolGUI::OnPythonPathChanged(const QString &pyEnv) { if (pyEnv == QString("Select")) { m_Controls.previewButton->setDisabled(true); QString path = QFileDialog::getExistingDirectory(m_Controls.pythonEnvComboBox->parentWidget(), "Python Path", "dir"); if (!path.isEmpty()) { this->OnPythonPathChanged(path); // recall same function for new path validation bool oldState = m_Controls.pythonEnvComboBox->blockSignals(true); // block signal firing while inserting item m_Controls.pythonEnvComboBox->insertItem(0, path); m_Controls.pythonEnvComboBox->setCurrentIndex(0); m_Controls.pythonEnvComboBox->blockSignals( oldState); // unblock signal firing after inserting item. Remove this after Qt6 migration } } else if (!this->IsTotalSegmentatorInstalled(this->GetPythonPathFromUI(pyEnv))) { this->ShowErrorMessage(WARNING_TOTALSEG_NOT_FOUND); m_Controls.previewButton->setDisabled(true); } else {// Show positive status meeage m_Controls.previewButton->setDisabled(false); QString uiPyPath = this->GetPythonPathFromUI(pyEnv); m_PythonPath = QmitkSetupVirtualEnvUtil::GetExactPythonPath(uiPyPath).first; } } QString QmitkTotalSegmentatorToolGUI::GetPythonPathFromUI(const QString &pyUI) const { QString fullPath = pyUI; if (-1 != fullPath.indexOf(")")) { fullPath = fullPath.mid(fullPath.indexOf(")") + 2); } return fullPath.simplified(); } void QmitkTotalSegmentatorToolGUI::OnOverrideChecked(int state) { bool isEnabled = false; if (state == Qt::Checked) { isEnabled = true; m_Controls.previewButton->setDisabled(true); m_PythonPath.clear(); } else { m_PythonPath.clear(); m_Controls.previewButton->setDisabled(true); if (m_IsInstalled) { const QString pythonPath = m_Installer.GetVirtualEnvPath(); auto pathObject = QmitkSetupVirtualEnvUtil::GetExactPythonPath(pythonPath); m_PythonPath = pathObject.first; this->EnableAll(m_IsInstalled); } } m_Controls.pythonEnvComboBox->setEnabled(isEnabled); } void QmitkTotalSegmentatorToolGUI::OnClearInstall() { QDir folderPath(m_Installer.GetVirtualEnvPath()); if (folderPath.removeRecursively()) { m_Controls.installButton->setEnabled(true); m_IsInstalled = false; if (!m_Controls.overrideBox->isChecked()) { m_Controls.previewButton->setEnabled(false); } } else { MITK_ERROR << "The virtual environment couldn't be removed. Please check if you have the required access privileges or, some other process is accessing the folders."; } } bool QmitkTotalSegmentatorToolInstaller::SetupVirtualEnv(const QString& venvName) { if (GetSystemPythonPath().isEmpty()) { return false; } QDir folderPath(GetBaseDir()); folderPath.mkdir(venvName); if (!folderPath.cd(venvName)) { return false; // Check if directory creation was successful. } mitk::ProcessExecutor::ArgumentListType args; auto spExec = mitk::ProcessExecutor::New(); auto spCommand = itk::CStyleCommand::New(); spCommand->SetCallback(&PrintProcessEvent); spExec->AddObserver(mitk::ExternalProcessOutputEvent(), spCommand); args.push_back("-m"); args.push_back("venv"); args.push_back(venvName.toStdString()); #ifdef _WIN32 QString pythonFile = GetSystemPythonPath() + QDir::separator() + "python.exe"; QString pythonExeFolder = "Scripts"; #else QString pythonFile = GetSystemPythonPath() + QDir::separator() + "python3"; QString pythonExeFolder = "bin"; #endif spExec->Execute(GetBaseDir().toStdString(), pythonFile.toStdString(), args); // Setup local virtual environment if (folderPath.cd(pythonExeFolder)) { this->SetPythonPath(folderPath.absolutePath()); this->SetPipPath(folderPath.absolutePath()); this->InstallPytorch(); for (auto &package : PACKAGES) { this->PipInstall(package.toStdString(), &PrintProcessEvent); } std::string pythonCode; // python syntax to check if torch is installed with CUDA. pythonCode.append("import torch;"); pythonCode.append("print('Pytorch was installed with CUDA') if torch.cuda.is_available() else print('PyTorch was " "installed WITHOUT CUDA');"); this->ExecutePython(pythonCode, &PrintProcessEvent); return true; } return false; } QString QmitkTotalSegmentatorToolInstaller::GetVirtualEnvPath() { return STORAGE_DIR + VENV_NAME; } diff --git a/Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.h b/Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.h index ac0c787f4c..f07a6a2faa 100644 --- a/Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.h +++ b/Modules/SegmentationUI/Qmitk/QmitkTotalSegmentatorToolGUI.h @@ -1,181 +1,182 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QmitkTotalSegmentatorToolGUI_h_Included #define QmitkTotalSegmentatorToolGUI_h_Included #include "QmitkMultiLabelSegWithPreviewToolGUIBase.h" #include "QmitkSetupVirtualEnvUtil.h" #include "QmitknnUNetGPU.h" #include "ui_QmitkTotalSegmentatorGUIControls.h" #include #include #include #include #include /** * @brief Installer class for TotalSegmentator Tool. * Class specifies the virtual environment name, install version, packages required to pip install * and implements SetupVirtualEnv method. * */ class QmitkTotalSegmentatorToolInstaller : public QmitkSetupVirtualEnvUtil { public: const QString VENV_NAME = ".totalsegmentator_v2"; const QString TOTALSEGMENTATOR_VERSION = "2.0.5"; const std::vector PACKAGES = {QString("Totalsegmentator==") + TOTALSEGMENTATOR_VERSION}; const QString STORAGE_DIR; inline QmitkTotalSegmentatorToolInstaller( const QString baseDir = QStandardPaths::writableLocation(QStandardPaths::GenericDataLocation) + QDir::separator() + qApp->organizationName() + QDir::separator()) : QmitkSetupVirtualEnvUtil(baseDir), STORAGE_DIR(baseDir){}; bool SetupVirtualEnv(const QString &) override; QString GetVirtualEnvPath() override; }; /** \ingroup org_mitk_gui_qt_interactivesegmentation_internal \brief GUI for mitk::TotalSegmentatorTool. \sa mitk:: */ class MITKSEGMENTATIONUI_EXPORT QmitkTotalSegmentatorToolGUI : public QmitkMultiLabelSegWithPreviewToolGUIBase { Q_OBJECT public: mitkClassMacro(QmitkTotalSegmentatorToolGUI, QmitkMultiLabelSegWithPreviewToolGUIBase); itkFactorylessNewMacro(Self); itkCloneMacro(Self); protected slots: /** * @brief Qt Slot */ void OnPreviewBtnClicked(); /** * @brief Qt Slot */ void OnPythonPathChanged(const QString &); /** * @brief Qt Slot */ std::pair OnSystemPythonChanged(const QString &); /** * @brief Qt Slot */ void OnInstallBtnClicked(); /** * @brief Qt Slot */ void OnOverrideChecked(int); /** * @brief Qt Slot */ void OnClearInstall(); protected: QmitkTotalSegmentatorToolGUI(); ~QmitkTotalSegmentatorToolGUI() = default; void ConnectNewTool(mitk::SegWithPreviewTool *newTool) override; void InitializeUI(QBoxLayout *mainLayout) override; + bool ConfirmExit() override; /** * @brief Enable (or Disable) GUI elements. */ void EnableAll(bool); /** * @brief Searches and parses paths of python virtual enviroments * from predefined lookout locations */ void AutoParsePythonPaths(); /** * @brief Checks if TotalSegmentator command is valid in the selected python virtual environment. * * @return bool */ bool IsTotalSegmentatorInstalled(const QString &); /** * @brief Creates a QMessage object and shows on screen. */ void ShowErrorMessage(const std::string &, QMessageBox::Icon = QMessageBox::Critical); /** * @brief Writes any message in white on the tool pane. */ void WriteStatusMessage(const QString &); /** * @brief Writes any message in red on the tool pane. */ void WriteErrorMessage(const QString &); /** * @brief Adds GPU information to the gpu combo box. * In case, there aren't any GPUs avaialble, the combo box will be * rendered editable. */ void SetGPUInfo(); /** * @brief Returns GPU id of the selected GPU from the Combo box. * * @return unsigned int */ unsigned int FetchSelectedGPUFromUI() const; /** * @brief Get the virtual env path from UI combobox removing any * extra special characters. * * @return QString */ QString GetPythonPathFromUI(const QString &) const; /** * @brief For storing values like Python path across sessions. */ QSettings m_Settings; QString m_PythonPath; QmitkGPULoader m_GpuLoader; Ui_QmitkTotalSegmentatorToolGUIControls m_Controls; bool m_FirstPreviewComputation = true; bool m_IsInstalled = false; EnableConfirmSegBtnFunctionType m_SuperclassEnableConfirmSegBtnFnc; const std::string WARNING_TOTALSEG_NOT_FOUND = "TotalSegmentator is not detected in the selected python environment.Please select a valid " "python environment or install TotalSegmentator."; const QStringList VALID_TASKS = { "total", "cerebral_bleed", "hip_implant", "coronary_arteries", "body", "lung_vessels", "pleural_pericard_effusion" }; QmitkTotalSegmentatorToolInstaller m_Installer; }; #endif diff --git a/Modules/SegmentationUI/Qmitk/QmitknnUNetGPU.cpp b/Modules/SegmentationUI/Qmitk/QmitknnUNetGPU.cpp index 68dfb6aa6b..be53422f7e 100644 --- a/Modules/SegmentationUI/Qmitk/QmitknnUNetGPU.cpp +++ b/Modules/SegmentationUI/Qmitk/QmitknnUNetGPU.cpp @@ -1,55 +1,55 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file.s ============================================================================*/ #include "QmitknnUNetGPU.h" #include QmitkGPULoader::QmitkGPULoader() { QProcess process; - process.start("nvidia-smi --query-gpu=name,memory.total --format=csv"); + process.start("nvidia-smi", QStringList() << "--query-gpu=name,memory.total" << "--format=csv"); process.waitForFinished(-1); QStringList infoStringList; while (process.canReadLine()) { QString line = process.readLine(); if (!line.startsWith("name")) { infoStringList << line; } } unsigned int count = 0; foreach (QString infoString, infoStringList) { QmitkGPUSpec spec; QStringList gpuDetails; gpuDetails = infoString.split(","); if(gpuDetails.count() == 2) { spec.name = gpuDetails.at(0).trimmed(); spec.id = count; spec.memory = gpuDetails.at(1).trimmed(); this->m_Gpus.push_back(spec); ++count; } } } int QmitkGPULoader::GetGPUCount() const { return static_cast(m_Gpus.size()); } std::vector QmitkGPULoader::GetAllGPUSpecs() { return m_Gpus; }