diff --git a/Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.cpp b/Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.cpp
index 79162c94a4..85418a047f 100644
--- a/Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.cpp
+++ b/Modules/SegmentationUI/Qmitk/QmitkSlicesInterpolator.cpp
@@ -1,1399 +1,1405 @@
/*============================================================================
The Medical Imaging Interaction Toolkit (MITK)
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
============================================================================*/
#include "QmitkSlicesInterpolator.h"
#include "QmitkSelectableGLWidget.h"
#include "QmitkStdMultiWidget.h"
#include "mitkApplyDiffImageOperation.h"
#include "mitkColorProperty.h"
#include "mitkCoreObjectFactory.h"
#include "mitkDiffImageApplier.h"
#include "mitkInteractionConst.h"
#include "mitkLevelWindowProperty.h"
#include "mitkOperationEvent.h"
#include "mitkOverwriteSliceImageFilter.h"
#include "mitkProgressBar.h"
#include "mitkProperties.h"
#include "mitkRenderingManager.h"
#include "mitkSegTool2D.h"
#include "mitkSliceNavigationController.h"
#include "mitkSurfaceToImageFilter.h"
#include "mitkToolManager.h"
#include "mitkUndoController.h"
#include <mitkExtractSliceFilter.h>
#include <mitkImageReadAccessor.h>
#include <mitkImageTimeSelector.h>
#include <mitkImageWriteAccessor.h>
#include <mitkPlaneProposer.h>
#include <mitkUnstructuredGridClusteringFilter.h>
#include <mitkVtkImageOverwrite.h>
#include <itkCommand.h>
#include <QCheckBox>
#include <QCursor>
#include <QMenu>
#include <QMessageBox>
#include <QPushButton>
#include <QVBoxLayout>
#include <vtkPolyVertex.h>
#include <vtkUnstructuredGrid.h>
-//#define ROUND(a) ((a)>0 ? (int)((a)+0.5) : -(int)(0.5-(a)))
+#include <array>
+
+namespace
+{
+ template <typename T = mitk::BaseData>
+ itk::SmartPointer<T> GetData(const mitk::DataNode* dataNode)
+ {
+ return nullptr != dataNode
+ ? dynamic_cast<T*>(dataNode->GetData())
+ : nullptr;
+ }
+}
float SURFACE_COLOR_RGB[3] = {0.49f, 1.0f, 0.16f};
const std::map<QAction *, mitk::SliceNavigationController *> QmitkSlicesInterpolator::createActionToSliceDimension()
{
std::map<QAction *, mitk::SliceNavigationController *> actionToSliceDimension;
foreach (mitk::SliceNavigationController *slicer, m_ControllerToDeleteObserverTag.keys())
{
actionToSliceDimension[new QAction(QString::fromStdString(slicer->GetViewDirectionAsString()), nullptr)] = slicer;
}
return actionToSliceDimension;
}
QmitkSlicesInterpolator::QmitkSlicesInterpolator(QWidget *parent, const char * /*name*/)
: QWidget(parent),
// ACTION_TO_SLICEDIMENSION( createActionToSliceDimension() ),
m_Interpolator(mitk::SegmentationInterpolationController::New()),
m_SurfaceInterpolator(mitk::SurfaceInterpolationController::GetInstance()),
m_ToolManager(nullptr),
m_Initialized(false),
m_LastSNC(nullptr),
m_LastSliceIndex(0),
m_2DInterpolationEnabled(false),
m_3DInterpolationEnabled(false),
m_FirstRun(true)
{
m_GroupBoxEnableExclusiveInterpolationMode = new QGroupBox("Interpolation", this);
QVBoxLayout *vboxLayout = new QVBoxLayout(m_GroupBoxEnableExclusiveInterpolationMode);
m_EdgeDetector = mitk::FeatureBasedEdgeDetectionFilter::New();
m_PointScorer = mitk::PointCloudScoringFilter::New();
m_CmbInterpolation = new QComboBox(m_GroupBoxEnableExclusiveInterpolationMode);
m_CmbInterpolation->addItem("Disabled");
m_CmbInterpolation->addItem("2-Dimensional");
m_CmbInterpolation->addItem("3-Dimensional");
vboxLayout->addWidget(m_CmbInterpolation);
m_BtnApply2D = new QPushButton("Confirm for single slice", m_GroupBoxEnableExclusiveInterpolationMode);
vboxLayout->addWidget(m_BtnApply2D);
m_BtnApplyForAllSlices2D = new QPushButton("Confirm for all slices", m_GroupBoxEnableExclusiveInterpolationMode);
vboxLayout->addWidget(m_BtnApplyForAllSlices2D);
m_BtnApply3D = new QPushButton("Confirm", m_GroupBoxEnableExclusiveInterpolationMode);
vboxLayout->addWidget(m_BtnApply3D);
// T28261
// m_BtnSuggestPlane = new QPushButton("Suggest a plane", m_GroupBoxEnableExclusiveInterpolationMode);
// vboxLayout->addWidget(m_BtnSuggestPlane);
m_BtnReinit3DInterpolation = new QPushButton("Reinit Interpolation", m_GroupBoxEnableExclusiveInterpolationMode);
vboxLayout->addWidget(m_BtnReinit3DInterpolation);
m_ChkShowPositionNodes = new QCheckBox("Show Position Nodes", m_GroupBoxEnableExclusiveInterpolationMode);
vboxLayout->addWidget(m_ChkShowPositionNodes);
this->HideAllInterpolationControls();
connect(m_CmbInterpolation, SIGNAL(currentIndexChanged(int)), this, SLOT(OnInterpolationMethodChanged(int)));
connect(m_BtnApply2D, SIGNAL(clicked()), this, SLOT(OnAcceptInterpolationClicked()));
connect(m_BtnApplyForAllSlices2D, SIGNAL(clicked()), this, SLOT(OnAcceptAllInterpolationsClicked()));
connect(m_BtnApply3D, SIGNAL(clicked()), this, SLOT(OnAccept3DInterpolationClicked()));
// T28261
// connect(m_BtnSuggestPlane, SIGNAL(clicked()), this, SLOT(OnSuggestPlaneClicked()));
connect(m_BtnReinit3DInterpolation, SIGNAL(clicked()), this, SLOT(OnReinit3DInterpolation()));
connect(m_ChkShowPositionNodes, SIGNAL(toggled(bool)), this, SLOT(OnShowMarkers(bool)));
connect(m_ChkShowPositionNodes, SIGNAL(toggled(bool)), this, SIGNAL(SignalShowMarkerNodes(bool)));
QHBoxLayout *layout = new QHBoxLayout(this);
layout->addWidget(m_GroupBoxEnableExclusiveInterpolationMode);
this->setLayout(layout);
itk::ReceptorMemberCommand<QmitkSlicesInterpolator>::Pointer command =
itk::ReceptorMemberCommand<QmitkSlicesInterpolator>::New();
command->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnInterpolationInfoChanged);
InterpolationInfoChangedObserverTag = m_Interpolator->AddObserver(itk::ModifiedEvent(), command);
itk::ReceptorMemberCommand<QmitkSlicesInterpolator>::Pointer command2 =
itk::ReceptorMemberCommand<QmitkSlicesInterpolator>::New();
command2->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnSurfaceInterpolationInfoChanged);
SurfaceInterpolationInfoChangedObserverTag = m_SurfaceInterpolator->AddObserver(itk::ModifiedEvent(), command2);
// feedback node and its visualization properties
m_FeedbackNode = mitk::DataNode::New();
mitk::CoreObjectFactory::GetInstance()->SetDefaultProperties(m_FeedbackNode);
m_FeedbackNode->SetProperty("binary", mitk::BoolProperty::New(true));
m_FeedbackNode->SetProperty("outline binary", mitk::BoolProperty::New(true));
m_FeedbackNode->SetProperty("color", mitk::ColorProperty::New(255.0, 255.0, 0.0));
m_FeedbackNode->SetProperty("texture interpolation", mitk::BoolProperty::New(false));
m_FeedbackNode->SetProperty("layer", mitk::IntProperty::New(20));
m_FeedbackNode->SetProperty("levelwindow", mitk::LevelWindowProperty::New(mitk::LevelWindow(0, 1)));
m_FeedbackNode->SetProperty("name", mitk::StringProperty::New("Interpolation feedback"));
m_FeedbackNode->SetProperty("opacity", mitk::FloatProperty::New(0.8));
m_FeedbackNode->SetProperty("helper object", mitk::BoolProperty::New(true));
m_InterpolatedSurfaceNode = mitk::DataNode::New();
m_InterpolatedSurfaceNode->SetProperty("color", mitk::ColorProperty::New(SURFACE_COLOR_RGB));
m_InterpolatedSurfaceNode->SetProperty("name", mitk::StringProperty::New("Surface Interpolation feedback"));
m_InterpolatedSurfaceNode->SetProperty("opacity", mitk::FloatProperty::New(0.5));
m_InterpolatedSurfaceNode->SetProperty("line width", mitk::FloatProperty::New(4.0f));
m_InterpolatedSurfaceNode->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false));
m_InterpolatedSurfaceNode->SetProperty("helper object", mitk::BoolProperty::New(true));
m_InterpolatedSurfaceNode->SetVisibility(false);
m_3DContourNode = mitk::DataNode::New();
m_3DContourNode->SetProperty("color", mitk::ColorProperty::New(0.0, 0.0, 0.0));
m_3DContourNode->SetProperty("hidden object", mitk::BoolProperty::New(true));
m_3DContourNode->SetProperty("name", mitk::StringProperty::New("Drawn Contours"));
m_3DContourNode->SetProperty("material.representation", mitk::VtkRepresentationProperty::New(VTK_WIREFRAME));
m_3DContourNode->SetProperty("material.wireframeLineWidth", mitk::FloatProperty::New(2.0f));
m_3DContourNode->SetProperty("3DContourContainer", mitk::BoolProperty::New(true));
m_3DContourNode->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false));
m_3DContourNode->SetVisibility(
false, mitk::BaseRenderer::GetInstance(mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget0")));
m_3DContourNode->SetVisibility(
false, mitk::BaseRenderer::GetInstance(mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget1")));
m_3DContourNode->SetVisibility(
false, mitk::BaseRenderer::GetInstance(mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget2")));
m_3DContourNode->SetVisibility(
false, mitk::BaseRenderer::GetInstance(mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget3")));
QWidget::setContentsMargins(0, 0, 0, 0);
if (QWidget::layout() != nullptr)
{
QWidget::layout()->setContentsMargins(0, 0, 0, 0);
}
// For running 3D Interpolation in background
// create a QFuture and a QFutureWatcher
connect(&m_Watcher, SIGNAL(started()), this, SLOT(StartUpdateInterpolationTimer()));
connect(&m_Watcher, SIGNAL(finished()), this, SLOT(OnSurfaceInterpolationFinished()));
connect(&m_Watcher, SIGNAL(finished()), this, SLOT(StopUpdateInterpolationTimer()));
m_Timer = new QTimer(this);
connect(m_Timer, SIGNAL(timeout()), this, SLOT(ChangeSurfaceColor()));
}
void QmitkSlicesInterpolator::SetDataStorage(mitk::DataStorage::Pointer storage)
{
if (m_DataStorage == storage)
{
return;
}
if (m_DataStorage.IsNotNull())
{
m_DataStorage->RemoveNodeEvent.RemoveListener(
mitk::MessageDelegate1<QmitkSlicesInterpolator, const mitk::DataNode*>(this, &QmitkSlicesInterpolator::NodeRemoved)
);
}
m_DataStorage = storage;
m_SurfaceInterpolator->SetDataStorage(storage);
if (m_DataStorage.IsNotNull())
{
m_DataStorage->RemoveNodeEvent.AddListener(
mitk::MessageDelegate1<QmitkSlicesInterpolator, const mitk::DataNode*>(this, &QmitkSlicesInterpolator::NodeRemoved)
);
}
}
mitk::DataStorage *QmitkSlicesInterpolator::GetDataStorage()
{
if (m_DataStorage.IsNotNull())
{
return m_DataStorage;
}
else
{
return nullptr;
}
}
void QmitkSlicesInterpolator::Initialize(mitk::ToolManager *toolManager,
const QList<mitk::SliceNavigationController *> &controllers)
{
Q_ASSERT(!controllers.empty());
if (m_Initialized)
{
// remove old observers
Uninitialize();
}
m_ToolManager = toolManager;
if (m_ToolManager)
{
// set enabled only if a segmentation is selected
mitk::DataNode *node = m_ToolManager->GetWorkingData(0);
QWidget::setEnabled(node != nullptr);
// react whenever the set of selected segmentation changes
m_ToolManager->WorkingDataChanged +=
mitk::MessageDelegate<QmitkSlicesInterpolator>(this, &QmitkSlicesInterpolator::OnToolManagerWorkingDataModified);
m_ToolManager->ReferenceDataChanged += mitk::MessageDelegate<QmitkSlicesInterpolator>(
this, &QmitkSlicesInterpolator::OnToolManagerReferenceDataModified);
// connect to the slice navigation controller. after each change, call the interpolator
foreach (mitk::SliceNavigationController *slicer, controllers)
{
// Has to be initialized
m_LastSNC = slicer;
m_TimePoints.insert(slicer, slicer->GetSelectedTimePoint());
itk::MemberCommand<QmitkSlicesInterpolator>::Pointer deleteCommand =
itk::MemberCommand<QmitkSlicesInterpolator>::New();
deleteCommand->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnSliceNavigationControllerDeleted);
m_ControllerToDeleteObserverTag.insert(slicer, slicer->AddObserver(itk::DeleteEvent(), deleteCommand));
itk::MemberCommand<QmitkSlicesInterpolator>::Pointer timeChangedCommand =
itk::MemberCommand<QmitkSlicesInterpolator>::New();
timeChangedCommand->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnTimeChanged);
m_ControllerToTimeObserverTag.insert(
slicer, slicer->AddObserver(mitk::SliceNavigationController::TimeGeometryEvent(nullptr, 0), timeChangedCommand));
itk::MemberCommand<QmitkSlicesInterpolator>::Pointer sliceChangedCommand =
itk::MemberCommand<QmitkSlicesInterpolator>::New();
sliceChangedCommand->SetCallbackFunction(this, &QmitkSlicesInterpolator::OnSliceChanged);
m_ControllerToSliceObserverTag.insert(
slicer, slicer->AddObserver(mitk::SliceNavigationController::GeometrySliceEvent(nullptr, 0), sliceChangedCommand));
}
ACTION_TO_SLICEDIMENSION = createActionToSliceDimension();
}
m_Initialized = true;
}
void QmitkSlicesInterpolator::Uninitialize()
{
if (m_ToolManager.IsNotNull())
{
m_ToolManager->WorkingDataChanged -=
mitk::MessageDelegate<QmitkSlicesInterpolator>(this, &QmitkSlicesInterpolator::OnToolManagerWorkingDataModified);
m_ToolManager->ReferenceDataChanged -= mitk::MessageDelegate<QmitkSlicesInterpolator>(
this, &QmitkSlicesInterpolator::OnToolManagerReferenceDataModified);
}
foreach (mitk::SliceNavigationController *slicer, m_ControllerToSliceObserverTag.keys())
{
slicer->RemoveObserver(m_ControllerToDeleteObserverTag.take(slicer));
slicer->RemoveObserver(m_ControllerToTimeObserverTag.take(slicer));
slicer->RemoveObserver(m_ControllerToSliceObserverTag.take(slicer));
}
ACTION_TO_SLICEDIMENSION.clear();
m_ToolManager = nullptr;
m_Initialized = false;
}
QmitkSlicesInterpolator::~QmitkSlicesInterpolator()
{
if (m_Initialized)
{
// remove old observers
Uninitialize();
}
WaitForFutures();
if (m_DataStorage.IsNotNull())
{
m_DataStorage->RemoveNodeEvent.RemoveListener(
mitk::MessageDelegate1<QmitkSlicesInterpolator, const mitk::DataNode*>(this, &QmitkSlicesInterpolator::NodeRemoved)
);
if (m_DataStorage->Exists(m_3DContourNode))
m_DataStorage->Remove(m_3DContourNode);
if (m_DataStorage->Exists(m_InterpolatedSurfaceNode))
m_DataStorage->Remove(m_InterpolatedSurfaceNode);
}
// remove observer
m_Interpolator->RemoveObserver(InterpolationInfoChangedObserverTag);
m_SurfaceInterpolator->RemoveObserver(SurfaceInterpolationInfoChangedObserverTag);
delete m_Timer;
}
/**
External enableization...
*/
void QmitkSlicesInterpolator::setEnabled(bool enable)
{
QWidget::setEnabled(enable);
// Set the gui elements of the different interpolation modi enabled
if (enable)
{
if (m_2DInterpolationEnabled)
{
this->Show2DInterpolationControls(true);
m_Interpolator->Activate2DInterpolation(true);
}
else if (m_3DInterpolationEnabled)
{
this->Show3DInterpolationControls(true);
this->Show3DInterpolationResult(true);
}
}
// Set all gui elements of the interpolation disabled
else
{
this->HideAllInterpolationControls();
this->Show3DInterpolationResult(false);
}
}
void QmitkSlicesInterpolator::On2DInterpolationEnabled(bool status)
{
OnInterpolationActivated(status);
m_Interpolator->Activate2DInterpolation(status);
}
void QmitkSlicesInterpolator::On3DInterpolationEnabled(bool status)
{
On3DInterpolationActivated(status);
}
void QmitkSlicesInterpolator::OnInterpolationDisabled(bool status)
{
if (status)
{
OnInterpolationActivated(!status);
On3DInterpolationActivated(!status);
this->Show3DInterpolationResult(false);
}
}
void QmitkSlicesInterpolator::HideAllInterpolationControls()
{
this->Show2DInterpolationControls(false);
this->Show3DInterpolationControls(false);
}
void QmitkSlicesInterpolator::Show2DInterpolationControls(bool show)
{
m_BtnApply2D->setVisible(show);
m_BtnApplyForAllSlices2D->setVisible(show);
}
void QmitkSlicesInterpolator::Show3DInterpolationControls(bool show)
{
m_BtnApply3D->setVisible(show);
// T28261
// m_BtnSuggestPlane->setVisible(show);
m_ChkShowPositionNodes->setVisible(show);
m_BtnReinit3DInterpolation->setVisible(show);
}
void QmitkSlicesInterpolator::OnInterpolationMethodChanged(int index)
{
switch (index)
{
case 0: // Disabled
m_GroupBoxEnableExclusiveInterpolationMode->setTitle("Interpolation");
this->HideAllInterpolationControls();
this->OnInterpolationActivated(false);
this->On3DInterpolationActivated(false);
this->Show3DInterpolationResult(false);
m_Interpolator->Activate2DInterpolation(false);
break;
case 1: // 2D
m_GroupBoxEnableExclusiveInterpolationMode->setTitle("Interpolation (Enabled)");
this->HideAllInterpolationControls();
this->Show2DInterpolationControls(true);
this->OnInterpolationActivated(true);
this->On3DInterpolationActivated(false);
m_Interpolator->Activate2DInterpolation(true);
break;
case 2: // 3D
m_GroupBoxEnableExclusiveInterpolationMode->setTitle("Interpolation (Enabled)");
this->HideAllInterpolationControls();
this->Show3DInterpolationControls(true);
this->OnInterpolationActivated(false);
this->On3DInterpolationActivated(true);
m_Interpolator->Activate2DInterpolation(false);
break;
default:
MITK_ERROR << "Unknown interpolation method!";
m_CmbInterpolation->setCurrentIndex(0);
break;
}
}
void QmitkSlicesInterpolator::OnShowMarkers(bool state)
{
mitk::DataStorage::SetOfObjects::ConstPointer allContourMarkers =
m_DataStorage->GetSubset(mitk::NodePredicateProperty::New("isContourMarker", mitk::BoolProperty::New(true)));
for (mitk::DataStorage::SetOfObjects::ConstIterator it = allContourMarkers->Begin(); it != allContourMarkers->End();
++it)
{
it->Value()->SetProperty("helper object", mitk::BoolProperty::New(!state));
}
}
void QmitkSlicesInterpolator::OnToolManagerWorkingDataModified()
{
if (m_ToolManager->GetWorkingData(0) != nullptr)
{
m_Segmentation = dynamic_cast<mitk::Image *>(m_ToolManager->GetWorkingData(0)->GetData());
m_BtnReinit3DInterpolation->setEnabled(true);
}
else
{
// If no workingdata is set, remove the interpolation feedback
this->GetDataStorage()->Remove(m_FeedbackNode);
m_FeedbackNode->SetData(nullptr);
this->GetDataStorage()->Remove(m_3DContourNode);
m_3DContourNode->SetData(nullptr);
this->GetDataStorage()->Remove(m_InterpolatedSurfaceNode);
m_InterpolatedSurfaceNode->SetData(nullptr);
m_BtnReinit3DInterpolation->setEnabled(false);
return;
}
// Updating the current selected segmentation for the 3D interpolation
SetCurrentContourListID();
if (m_2DInterpolationEnabled)
{
OnInterpolationActivated(true); // re-initialize if needed
}
this->CheckSupportedImageDimension();
}
void QmitkSlicesInterpolator::OnToolManagerReferenceDataModified()
{
}
void QmitkSlicesInterpolator::OnTimeChanged(itk::Object *sender, const itk::EventObject &e)
{
// Check if we really have a GeometryTimeEvent
if (!dynamic_cast<const mitk::SliceNavigationController::GeometryTimeEvent *>(&e))
return;
mitk::SliceNavigationController *slicer = dynamic_cast<mitk::SliceNavigationController *>(sender);
Q_ASSERT(slicer);
const auto timePoint = slicer->GetSelectedTimePoint();
m_TimePoints[slicer] = timePoint;
m_SurfaceInterpolator->SetCurrentTimePoint(timePoint);
if (m_LastSNC == slicer)
{
slicer->SendSlice(); // will trigger a new interpolation
}
}
void QmitkSlicesInterpolator::OnSliceChanged(itk::Object *sender, const itk::EventObject &e)
{
// Check whether we really have a GeometrySliceEvent
if (!dynamic_cast<const mitk::SliceNavigationController::GeometrySliceEvent *>(&e))
return;
mitk::SliceNavigationController *slicer = dynamic_cast<mitk::SliceNavigationController *>(sender);
if (TranslateAndInterpolateChangedSlice(e, slicer))
{
slicer->GetRenderer()->RequestUpdate();
}
}
bool QmitkSlicesInterpolator::TranslateAndInterpolateChangedSlice(const itk::EventObject &e,
mitk::SliceNavigationController *slicer)
{
if (!m_2DInterpolationEnabled)
return false;
try
{
const mitk::SliceNavigationController::GeometrySliceEvent &event =
dynamic_cast<const mitk::SliceNavigationController::GeometrySliceEvent &>(e);
mitk::TimeGeometry *tsg = event.GetTimeGeometry();
if (tsg && m_TimePoints.contains(slicer) && tsg->IsValidTimePoint(m_TimePoints[slicer]))
{
mitk::SlicedGeometry3D *slicedGeometry =
dynamic_cast<mitk::SlicedGeometry3D *>(tsg->GetGeometryForTimePoint(m_TimePoints[slicer]).GetPointer());
if (slicedGeometry)
{
m_LastSNC = slicer;
mitk::PlaneGeometry *plane =
dynamic_cast<mitk::PlaneGeometry *>(slicedGeometry->GetPlaneGeometry(event.GetPos()));
if (plane)
Interpolate(plane, m_TimePoints[slicer], slicer);
return true;
}
}
}
catch (const std::bad_cast &)
{
return false; // so what
}
return false;
}
void QmitkSlicesInterpolator::Interpolate(mitk::PlaneGeometry *plane,
mitk::TimePointType timePoint,
mitk::SliceNavigationController *slicer)
{
if (m_ToolManager)
{
mitk::DataNode *node = m_ToolManager->GetWorkingData(0);
if (node)
{
m_Segmentation = dynamic_cast<mitk::Image *>(node->GetData());
if (m_Segmentation)
{
if (!m_Segmentation->GetTimeGeometry()->IsValidTimePoint(timePoint))
{
MITK_WARN << "Cannot interpolate segmentation. Passed time point is not within the time bounds of WorkingImage. Time point: " << timePoint;
return;
}
const auto timeStep = m_Segmentation->GetTimeGeometry()->TimePointToTimeStep(timePoint);
int clickedSliceDimension(-1);
int clickedSliceIndex(-1);
// calculate real slice position, i.e. slice of the image and not slice of the TimeSlicedGeometry
mitk::SegTool2D::DetermineAffectedImageSlice(m_Segmentation, plane, clickedSliceDimension, clickedSliceIndex);
mitk::Image::Pointer interpolation =
m_Interpolator->Interpolate(clickedSliceDimension, clickedSliceIndex, plane, timeStep);
m_FeedbackNode->SetData(interpolation);
m_LastSNC = slicer;
m_LastSliceIndex = clickedSliceIndex;
}
}
}
}
void QmitkSlicesInterpolator::OnSurfaceInterpolationFinished()
{
mitk::Surface::Pointer interpolatedSurface = m_SurfaceInterpolator->GetInterpolationResult();
mitk::DataNode *workingNode = m_ToolManager->GetWorkingData(0);
if (interpolatedSurface.IsNotNull() && workingNode &&
workingNode->IsVisible(
mitk::BaseRenderer::GetInstance(mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget2"))))
{
m_BtnApply3D->setEnabled(true);
// T28261
// m_BtnSuggestPlane->setEnabled(true);
m_InterpolatedSurfaceNode->SetData(interpolatedSurface);
m_3DContourNode->SetData(m_SurfaceInterpolator->GetContoursAsSurface());
this->Show3DInterpolationResult(true);
if (!m_DataStorage->Exists(m_InterpolatedSurfaceNode))
{
m_DataStorage->Add(m_InterpolatedSurfaceNode);
}
if (!m_DataStorage->Exists(m_3DContourNode))
{
m_DataStorage->Add(m_3DContourNode, workingNode);
}
}
else if (interpolatedSurface.IsNull())
{
m_BtnApply3D->setEnabled(false);
// T28261
// m_BtnSuggestPlane->setEnabled(false);
if (m_DataStorage->Exists(m_InterpolatedSurfaceNode))
{
this->Show3DInterpolationResult(false);
}
}
m_BtnReinit3DInterpolation->setEnabled(true);
foreach (mitk::SliceNavigationController *slicer, m_ControllerToTimeObserverTag.keys())
{
slicer->GetRenderer()->RequestUpdate();
}
}
void QmitkSlicesInterpolator::OnAcceptInterpolationClicked()
{
if (m_Segmentation && m_FeedbackNode->GetData())
{
// Make sure that for reslicing and overwriting the same alogrithm is used. We can specify the mode of the vtk
// reslicer
vtkSmartPointer<mitkVtkImageOverwrite> reslice = vtkSmartPointer<mitkVtkImageOverwrite>::New();
// Set slice as input
mitk::Image::Pointer slice = dynamic_cast<mitk::Image *>(m_FeedbackNode->GetData());
reslice->SetInputSlice(slice->GetSliceData()->GetVtkImageAccessor(slice)->GetVtkImageData());
// set overwrite mode to true to write back to the image volume
reslice->SetOverwriteMode(true);
reslice->Modified();
const auto timePoint = m_LastSNC->GetSelectedTimePoint();
if (!m_Segmentation->GetTimeGeometry()->IsValidTimePoint(timePoint))
{
MITK_WARN << "Cannot accept interpolation. Time point selected by SliceNavigationController is not within the time bounds of segmentation. Time point: " << timePoint;
return;
}
mitk::ExtractSliceFilter::Pointer extractor = mitk::ExtractSliceFilter::New(reslice);
extractor->SetInput(m_Segmentation);
const auto timeStep = m_Segmentation->GetTimeGeometry()->TimePointToTimeStep(timePoint);
extractor->SetTimeStep(timeStep);
extractor->SetWorldGeometry(m_LastSNC->GetCurrentPlaneGeometry());
extractor->SetVtkOutputRequest(true);
extractor->SetResliceTransformByGeometry(m_Segmentation->GetTimeGeometry()->GetGeometryForTimeStep(timeStep));
extractor->Modified();
extractor->Update();
// the image was modified within the pipeline, but not marked so
m_Segmentation->Modified();
m_Segmentation->GetVtkImageData()->Modified();
m_FeedbackNode->SetData(nullptr);
mitk::RenderingManager::GetInstance()->RequestUpdateAll();
}
}
void QmitkSlicesInterpolator::AcceptAllInterpolations(mitk::SliceNavigationController *slicer)
{
/*
* What exactly is done here:
* 1. We create an empty diff image for the current segmentation
* 2. All interpolated slices are written into the diff image
* 3. Then the diffimage is applied to the original segmentation
*/
if (m_Segmentation)
{
mitk::Image::Pointer image3D = m_Segmentation;
unsigned int timeStep(0);
const auto timePoint = slicer->GetSelectedTimePoint();
if (m_Segmentation->GetDimension() == 4)
{
if (!m_Segmentation->GetTimeGeometry()->IsValidTimePoint(timePoint))
{
MITK_WARN << "Cannot accept all interpolations. Time point selected by passed SliceNavigationController is not within the time bounds of segmentation. Time point: " << timePoint;
return;
}
timeStep = m_Segmentation->GetTimeGeometry()->TimePointToTimeStep(timePoint);
mitk::ImageTimeSelector::Pointer timeSelector = mitk::ImageTimeSelector::New();
timeSelector->SetInput(m_Segmentation);
timeSelector->SetTimeNr(timeStep);
timeSelector->Update();
image3D = timeSelector->GetOutput();
}
// create a empty diff image for the undo operation
mitk::Image::Pointer diffImage = mitk::Image::New();
diffImage->Initialize(image3D);
// Create scope for ImageWriteAccessor so that the accessor is destroyed
// after the image is initialized. Otherwise later image access will lead to an error
{
mitk::ImageWriteAccessor imAccess(diffImage);
// Set all pixels to zero
mitk::PixelType pixelType(mitk::MakeScalarPixelType<mitk::Tool::DefaultSegmentationDataType>());
// For legacy purpose support former pixel type of segmentations (before multilabel)
if (m_Segmentation->GetImageDescriptor()->GetChannelDescriptor().GetPixelType().GetComponentType() ==
itk::ImageIOBase::UCHAR)
{
pixelType = mitk::MakeScalarPixelType<unsigned char>();
}
memset(imAccess.GetData(),
0,
(pixelType.GetBpe() >> 3) * diffImage->GetDimension(0) * diffImage->GetDimension(1) *
diffImage->GetDimension(2));
}
// Since we need to shift the plane it must be clone so that the original plane isn't altered
mitk::PlaneGeometry::Pointer reslicePlane = slicer->GetCurrentPlaneGeometry()->Clone();
int sliceDimension(-1);
int sliceIndex(-1);
mitk::SegTool2D::DetermineAffectedImageSlice(m_Segmentation, reslicePlane, sliceDimension, sliceIndex);
unsigned int zslices = m_Segmentation->GetDimension(sliceDimension);
mitk::ProgressBar::GetInstance()->AddStepsToDo(zslices);
mitk::Point3D origin = reslicePlane->GetOrigin();
unsigned int totalChangedSlices(0);
for (unsigned int sliceIndex = 0; sliceIndex < zslices; ++sliceIndex)
{
// Transforming the current origin of the reslice plane
// so that it matches the one of the next slice
m_Segmentation->GetSlicedGeometry()->WorldToIndex(origin, origin);
origin[sliceDimension] = sliceIndex;
m_Segmentation->GetSlicedGeometry()->IndexToWorld(origin, origin);
reslicePlane->SetOrigin(origin);
// Set the slice as 'input'
mitk::Image::Pointer interpolation =
m_Interpolator->Interpolate(sliceDimension, sliceIndex, reslicePlane, timeStep);
if (interpolation.IsNotNull()) // we don't check if interpolation is necessary/sensible - but m_Interpolator does
{
// Setting up the reslicing pipeline which allows us to write the interpolation results back into
// the image volume
vtkSmartPointer<mitkVtkImageOverwrite> reslice = vtkSmartPointer<mitkVtkImageOverwrite>::New();
// set overwrite mode to true to write back to the image volume
reslice->SetInputSlice(interpolation->GetSliceData()->GetVtkImageAccessor(interpolation)->GetVtkImageData());
reslice->SetOverwriteMode(true);
reslice->Modified();
mitk::ExtractSliceFilter::Pointer diffslicewriter = mitk::ExtractSliceFilter::New(reslice);
diffslicewriter->SetInput(diffImage);
diffslicewriter->SetTimeStep(0);
diffslicewriter->SetWorldGeometry(reslicePlane);
diffslicewriter->SetVtkOutputRequest(true);
diffslicewriter->SetResliceTransformByGeometry(diffImage->GetTimeGeometry()->GetGeometryForTimeStep(0));
diffslicewriter->Modified();
diffslicewriter->Update();
++totalChangedSlices;
}
mitk::ProgressBar::GetInstance()->Progress();
}
mitk::RenderingManager::GetInstance()->RequestUpdateAll();
if (totalChangedSlices > 0)
{
// store undo stack items
if (true)
{
// create do/undo operations
mitk::ApplyDiffImageOperation *doOp =
new mitk::ApplyDiffImageOperation(mitk::OpTEST, m_Segmentation, diffImage, timeStep);
mitk::ApplyDiffImageOperation *undoOp =
new mitk::ApplyDiffImageOperation(mitk::OpTEST, m_Segmentation, diffImage, timeStep);
undoOp->SetFactor(-1.0);
std::stringstream comment;
comment << "Confirm all interpolations (" << totalChangedSlices << ")";
mitk::OperationEvent *undoStackItem =
new mitk::OperationEvent(mitk::DiffImageApplier::GetInstanceForUndo(), doOp, undoOp, comment.str());
mitk::OperationEvent::IncCurrGroupEventId();
mitk::OperationEvent::IncCurrObjectEventId();
mitk::UndoController::GetCurrentUndoModel()->SetOperationEvent(undoStackItem);
// acutally apply the changes here to the original image
mitk::DiffImageApplier::GetInstanceForUndo()->ExecuteOperation(doOp);
}
}
m_FeedbackNode->SetData(nullptr);
mitk::RenderingManager::GetInstance()->RequestUpdateAll();
}
}
void QmitkSlicesInterpolator::FinishInterpolation(mitk::SliceNavigationController *slicer)
{
// this redirect is for calling from outside
if (slicer == nullptr)
OnAcceptAllInterpolationsClicked();
else
AcceptAllInterpolations(slicer);
}
void QmitkSlicesInterpolator::OnAcceptAllInterpolationsClicked()
{
QMenu orientationPopup(this);
std::map<QAction *, mitk::SliceNavigationController *>::const_iterator it;
for (it = ACTION_TO_SLICEDIMENSION.begin(); it != ACTION_TO_SLICEDIMENSION.end(); it++)
orientationPopup.addAction(it->first);
connect(&orientationPopup, SIGNAL(triggered(QAction *)), this, SLOT(OnAcceptAllPopupActivated(QAction *)));
orientationPopup.exec(QCursor::pos());
}
void QmitkSlicesInterpolator::OnAccept3DInterpolationClicked()
{
- if (m_InterpolatedSurfaceNode.IsNotNull() && m_InterpolatedSurfaceNode->GetData())
+ auto referenceImage = GetData<mitk::Image>(m_ToolManager->GetReferenceData(0));
+
+ auto segmentationDataNode = m_ToolManager->GetWorkingData(0);
+ auto segmentation = GetData<mitk::Image>(segmentationDataNode);
+
+ if (referenceImage.IsNull() || segmentation.IsNull())
+ return;
+
+ const auto timePoint = m_LastSNC->GetSelectedTimePoint();
+
+ if (!referenceImage->GetTimeGeometry()->IsValidTimePoint(timePoint) ||
+ !segmentation->GetTimeGeometry()->IsValidTimePoint(timePoint))
{
- mitk::DataNode *segmentationNode = m_ToolManager->GetWorkingData(0);
- mitk::Image *currSeg = dynamic_cast<mitk::Image *>(segmentationNode->GetData());
+ MITK_WARN << "Cannot accept interpolation. Current time point is not within the time bounds of the patient image and segmentation.";
+ return;
+ }
- mitk::SurfaceToImageFilter::Pointer s2iFilter = mitk::SurfaceToImageFilter::New();
- s2iFilter->MakeOutputBinaryOn();
- if (currSeg->GetPixelType().GetComponentType() == itk::ImageIOBase::USHORT)
- s2iFilter->SetUShortBinaryPixelType(true);
- s2iFilter->SetInput(dynamic_cast<mitk::Surface *>(m_InterpolatedSurfaceNode->GetData()));
+ auto interpolatedSurface = GetData<mitk::Surface>(m_InterpolatedSurfaceNode);
- // check if ToolManager holds valid ReferenceData
- if (m_ToolManager->GetReferenceData(0) == nullptr || m_ToolManager->GetWorkingData(0) == nullptr)
- {
- return;
- }
- s2iFilter->SetImage(dynamic_cast<mitk::Image *>(m_ToolManager->GetReferenceData(0)->GetData()));
- s2iFilter->Update();
+ if (interpolatedSurface.IsNull())
+ return;
- mitk::Image::Pointer newSeg = s2iFilter->GetOutput();
+ auto surfaceToImageFilter = mitk::SurfaceToImageFilter::New();
- const auto timePoint = m_LastSNC->GetSelectedTimePoint();
- if (!m_ToolManager->GetReferenceData(0)->GetData()->GetTimeGeometry()->IsValidTimePoint(timePoint) ||
- !m_ToolManager->GetWorkingData(0)->GetData()->GetTimeGeometry()->IsValidTimePoint(timePoint))
- {
- MITK_WARN << "Cannot accept interpolation. Time point selected by SliceNavigationController is not within the time bounds of reference or working image. Time point: " << timePoint;
- return;
- }
+ surfaceToImageFilter->SetImage(referenceImage);
+ surfaceToImageFilter->SetMakeOutputBinary(true);
+ surfaceToImageFilter->SetUShortBinaryPixelType(itk::ImageIOBase::USHORT == segmentation->GetPixelType().GetComponentType());
+ surfaceToImageFilter->SetInput(interpolatedSurface);
+ surfaceToImageFilter->Update();
- const auto newTimeStep = newSeg->GetTimeGeometry()->TimePointToTimeStep(timePoint);
- mitk::ImageReadAccessor readAccess(newSeg, newSeg->GetVolumeData(newTimeStep));
- const void *cPointer = readAccess.GetData();
+ mitk::Image::Pointer interpolatedSegmentation = surfaceToImageFilter->GetOutput();
- if (currSeg && cPointer)
- {
- const auto curTimeStep = currSeg->GetTimeGeometry()->TimePointToTimeStep(timePoint);
- currSeg->SetVolume(cPointer, curTimeStep, 0);
- }
- else
- {
- return;
- }
+ auto timeStep = interpolatedSegmentation->GetTimeGeometry()->TimePointToTimeStep(timePoint);
+ mitk::ImageReadAccessor readAccessor(interpolatedSegmentation, interpolatedSegmentation->GetVolumeData(timeStep));
+ const auto* dataPointer = readAccessor.GetData();
- m_CmbInterpolation->setCurrentIndex(0);
- mitk::RenderingManager::GetInstance()->RequestUpdateAll();
- mitk::DataNode::Pointer segSurface = mitk::DataNode::New();
- float rgb[3];
- segmentationNode->GetColor(rgb);
- segSurface->SetColor(rgb);
- segSurface->SetData(m_InterpolatedSurfaceNode->GetData());
- std::stringstream stream;
- stream << segmentationNode->GetName();
- stream << "_";
- stream << "3D-interpolation";
- segSurface->SetName(stream.str());
- segSurface->SetProperty("opacity", mitk::FloatProperty::New(0.7));
- segSurface->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(true));
- segSurface->SetProperty("3DInterpolationResult", mitk::BoolProperty::New(true));
- segSurface->SetVisibility(false);
- m_DataStorage->Add(segSurface, segmentationNode);
- this->Show3DInterpolationResult(false);
- }
+ if (nullptr == dataPointer)
+ return;
+
+ timeStep = segmentation->GetTimeGeometry()->TimePointToTimeStep(timePoint);
+ segmentation->SetVolume(dataPointer, timeStep, 0);
+
+ m_CmbInterpolation->setCurrentIndex(0);
+ this->Show3DInterpolationResult(false);
+
+ auto interpolatedSurfaceDataNode = mitk::DataNode::New();
+
+ interpolatedSurfaceDataNode->SetData(interpolatedSurface);
+ interpolatedSurfaceDataNode->SetName(segmentationDataNode->GetName() + "_3D-interpolation");
+ interpolatedSurfaceDataNode->SetBoolProperty("3DInterpolationResult", true);
+ interpolatedSurfaceDataNode->SetOpacity(0.7f);
+
+ std::array<float, 3> rgb;
+ segmentationDataNode->GetColor(rgb.data());
+ interpolatedSurfaceDataNode->SetColor(rgb.data());
+
+ m_DataStorage->Add(interpolatedSurfaceDataNode, segmentationDataNode);
}
void ::QmitkSlicesInterpolator::OnSuggestPlaneClicked()
{
if (m_PlaneWatcher.isRunning())
m_PlaneWatcher.waitForFinished();
m_PlaneFuture = QtConcurrent::run(this, &QmitkSlicesInterpolator::RunPlaneSuggestion);
m_PlaneWatcher.setFuture(m_PlaneFuture);
}
void ::QmitkSlicesInterpolator::RunPlaneSuggestion()
{
if (m_FirstRun)
mitk::ProgressBar::GetInstance()->AddStepsToDo(7);
else
mitk::ProgressBar::GetInstance()->AddStepsToDo(3);
m_EdgeDetector->SetSegmentationMask(m_Segmentation);
m_EdgeDetector->SetInput(dynamic_cast<mitk::Image *>(m_ToolManager->GetReferenceData(0)->GetData()));
m_EdgeDetector->Update();
mitk::UnstructuredGrid::Pointer uGrid = mitk::UnstructuredGrid::New();
uGrid->SetVtkUnstructuredGrid(m_EdgeDetector->GetOutput()->GetVtkUnstructuredGrid());
mitk::ProgressBar::GetInstance()->Progress();
mitk::Surface::Pointer surface = dynamic_cast<mitk::Surface *>(m_InterpolatedSurfaceNode->GetData());
vtkSmartPointer<vtkPolyData> vtkpoly = surface->GetVtkPolyData();
vtkSmartPointer<vtkPoints> vtkpoints = vtkpoly->GetPoints();
vtkSmartPointer<vtkUnstructuredGrid> vGrid = vtkSmartPointer<vtkUnstructuredGrid>::New();
vtkSmartPointer<vtkPolyVertex> verts = vtkSmartPointer<vtkPolyVertex>::New();
verts->GetPointIds()->SetNumberOfIds(vtkpoints->GetNumberOfPoints());
for (int i = 0; i < vtkpoints->GetNumberOfPoints(); i++)
{
verts->GetPointIds()->SetId(i, i);
}
vGrid->Allocate(1);
vGrid->InsertNextCell(verts->GetCellType(), verts->GetPointIds());
vGrid->SetPoints(vtkpoints);
mitk::UnstructuredGrid::Pointer interpolationGrid = mitk::UnstructuredGrid::New();
interpolationGrid->SetVtkUnstructuredGrid(vGrid);
m_PointScorer->SetInput(0, uGrid);
m_PointScorer->SetInput(1, interpolationGrid);
m_PointScorer->Update();
mitk::UnstructuredGrid::Pointer scoredGrid = mitk::UnstructuredGrid::New();
scoredGrid = m_PointScorer->GetOutput();
mitk::ProgressBar::GetInstance()->Progress();
double spacing = mitk::SurfaceInterpolationController::GetInstance()->GetDistanceImageSpacing();
mitk::UnstructuredGridClusteringFilter::Pointer clusterFilter = mitk::UnstructuredGridClusteringFilter::New();
clusterFilter->SetInput(scoredGrid);
clusterFilter->SetMeshing(false);
clusterFilter->SetMinPts(4);
clusterFilter->Seteps(spacing);
clusterFilter->Update();
mitk::ProgressBar::GetInstance()->Progress();
// Create plane suggestion
mitk::BaseRenderer::Pointer br =
mitk::BaseRenderer::GetInstance(mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget0"));
mitk::PlaneProposer planeProposer;
std::vector<mitk::UnstructuredGrid::Pointer> grids = clusterFilter->GetAllClusters();
planeProposer.SetUnstructuredGrids(grids);
mitk::SliceNavigationController::Pointer snc = br->GetSliceNavigationController();
planeProposer.SetSliceNavigationController(snc);
planeProposer.SetUseDistances(true);
try
{
planeProposer.CreatePlaneInfo();
}
catch (const mitk::Exception &e)
{
MITK_ERROR << e.what();
}
mitk::RenderingManager::GetInstance()->RequestUpdateAll();
m_FirstRun = false;
}
void QmitkSlicesInterpolator::OnReinit3DInterpolation()
{
mitk::NodePredicateProperty::Pointer pred =
mitk::NodePredicateProperty::New("3DContourContainer", mitk::BoolProperty::New(true));
mitk::DataStorage::SetOfObjects::ConstPointer contourNodes =
m_DataStorage->GetDerivations(m_ToolManager->GetWorkingData(0), pred);
if (contourNodes->Size() != 0)
{
m_BtnApply3D->setEnabled(true);
m_3DContourNode = contourNodes->at(0);
mitk::Surface::Pointer contours = dynamic_cast<mitk::Surface *>(m_3DContourNode->GetData());
if (contours)
mitk::SurfaceInterpolationController::GetInstance()->ReinitializeInterpolation(contours);
m_BtnReinit3DInterpolation->setEnabled(false);
}
else
{
m_BtnApply3D->setEnabled(false);
QMessageBox errorInfo;
errorInfo.setWindowTitle("Reinitialize surface interpolation");
errorInfo.setIcon(QMessageBox::Information);
errorInfo.setText("No contours available for the selected segmentation!");
errorInfo.exec();
}
}
void QmitkSlicesInterpolator::OnAcceptAllPopupActivated(QAction *action)
{
try
{
std::map<QAction *, mitk::SliceNavigationController *>::const_iterator iter = ACTION_TO_SLICEDIMENSION.find(action);
if (iter != ACTION_TO_SLICEDIMENSION.end())
{
mitk::SliceNavigationController *slicer = iter->second;
AcceptAllInterpolations(slicer);
}
}
catch (...)
{
/* Showing message box with possible memory error */
QMessageBox errorInfo;
errorInfo.setWindowTitle("Interpolation Process");
errorInfo.setIcon(QMessageBox::Critical);
errorInfo.setText("An error occurred during interpolation. Possible cause: Not enough memory!");
errorInfo.exec();
// additional error message on std::cerr
std::cerr << "Ill construction in " __FILE__ " l. " << __LINE__ << std::endl;
}
}
void QmitkSlicesInterpolator::OnInterpolationActivated(bool on)
{
m_2DInterpolationEnabled = on;
try
{
if (m_DataStorage.IsNotNull())
{
if (on && !m_DataStorage->Exists(m_FeedbackNode))
{
m_DataStorage->Add(m_FeedbackNode);
}
}
}
catch (...)
{
// don't care (double add/remove)
}
if (m_ToolManager)
{
mitk::DataNode *workingNode = m_ToolManager->GetWorkingData(0);
mitk::DataNode *referenceNode = m_ToolManager->GetReferenceData(0);
QWidget::setEnabled(workingNode != nullptr);
m_BtnApply2D->setEnabled(on);
m_FeedbackNode->SetVisibility(on);
if (!on)
{
mitk::RenderingManager::GetInstance()->RequestUpdateAll();
return;
}
if (workingNode)
{
mitk::Image *segmentation = dynamic_cast<mitk::Image *>(workingNode->GetData());
if (segmentation)
{
m_Interpolator->SetSegmentationVolume(segmentation);
if (referenceNode)
{
mitk::Image *referenceImage = dynamic_cast<mitk::Image *>(referenceNode->GetData());
m_Interpolator->SetReferenceVolume(referenceImage); // may be nullptr
}
}
}
}
UpdateVisibleSuggestion();
}
void QmitkSlicesInterpolator::Run3DInterpolation()
{
m_SurfaceInterpolator->Interpolate();
}
void QmitkSlicesInterpolator::StartUpdateInterpolationTimer()
{
m_Timer->start(500);
}
void QmitkSlicesInterpolator::StopUpdateInterpolationTimer()
{
m_Timer->stop();
m_InterpolatedSurfaceNode->SetProperty("color", mitk::ColorProperty::New(SURFACE_COLOR_RGB));
mitk::RenderingManager::GetInstance()->RequestUpdate(
mitk::BaseRenderer::GetInstance(mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget3"))->GetRenderWindow());
}
void QmitkSlicesInterpolator::ChangeSurfaceColor()
{
float currentColor[3];
m_InterpolatedSurfaceNode->GetColor(currentColor);
if (currentColor[2] == SURFACE_COLOR_RGB[2])
{
m_InterpolatedSurfaceNode->SetProperty("color", mitk::ColorProperty::New(1.0f, 1.0f, 1.0f));
}
else
{
m_InterpolatedSurfaceNode->SetProperty("color", mitk::ColorProperty::New(SURFACE_COLOR_RGB));
}
m_InterpolatedSurfaceNode->Update();
mitk::RenderingManager::GetInstance()->RequestUpdate(
mitk::BaseRenderer::GetInstance(mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget3"))->GetRenderWindow());
}
void QmitkSlicesInterpolator::On3DInterpolationActivated(bool on)
{
m_3DInterpolationEnabled = on;
this->CheckSupportedImageDimension();
try
{
if (m_DataStorage.IsNotNull() && m_ToolManager && m_3DInterpolationEnabled)
{
mitk::DataNode *workingNode = m_ToolManager->GetWorkingData(0);
if (workingNode)
{
bool isInterpolationResult(false);
workingNode->GetBoolProperty("3DInterpolationResult", isInterpolationResult);
mitk::NodePredicateAnd::Pointer pred = mitk::NodePredicateAnd::New(
mitk::NodePredicateProperty::New("3DInterpolationResult", mitk::BoolProperty::New(true)),
mitk::NodePredicateDataType::New("Surface"));
mitk::DataStorage::SetOfObjects::ConstPointer interpolationResults =
m_DataStorage->GetDerivations(workingNode, pred);
for (unsigned int i = 0; i < interpolationResults->Size(); ++i)
{
mitk::DataNode::Pointer currNode = interpolationResults->at(i);
if (currNode.IsNotNull())
m_DataStorage->Remove(currNode);
}
if ((workingNode->IsVisible(
mitk::BaseRenderer::GetInstance(mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget2")))) &&
!isInterpolationResult && m_3DInterpolationEnabled)
{
int ret = QMessageBox::Yes;
if (m_SurfaceInterpolator->EstimatePortionOfNeededMemory() > 0.5)
{
QMessageBox msgBox;
msgBox.setText("Due to short handed system memory the 3D interpolation may be very slow!");
msgBox.setInformativeText("Are you sure you want to activate the 3D interpolation?");
msgBox.setStandardButtons(QMessageBox::No | QMessageBox::Yes);
ret = msgBox.exec();
}
if (m_Watcher.isRunning())
m_Watcher.waitForFinished();
if (ret == QMessageBox::Yes)
{
m_Future = QtConcurrent::run(this, &QmitkSlicesInterpolator::Run3DInterpolation);
m_Watcher.setFuture(m_Future);
}
else
{
m_CmbInterpolation->setCurrentIndex(0);
}
}
else if (!m_3DInterpolationEnabled)
{
this->Show3DInterpolationResult(false);
m_BtnApply3D->setEnabled(m_3DInterpolationEnabled);
// T28261
// m_BtnSuggestPlane->setEnabled(m_3DInterpolationEnabled);
}
}
else
{
QWidget::setEnabled(false);
m_ChkShowPositionNodes->setEnabled(m_3DInterpolationEnabled);
}
}
if (!m_3DInterpolationEnabled)
{
this->Show3DInterpolationResult(false);
m_BtnApply3D->setEnabled(m_3DInterpolationEnabled);
// T28261
// m_BtnSuggestPlane->setEnabled(m_3DInterpolationEnabled);
}
}
catch (...)
{
MITK_ERROR << "Error with 3D surface interpolation!";
}
mitk::RenderingManager::GetInstance()->RequestUpdateAll();
}
void QmitkSlicesInterpolator::EnableInterpolation(bool on)
{
// only to be called from the outside world
// just a redirection to OnInterpolationActivated
OnInterpolationActivated(on);
}
void QmitkSlicesInterpolator::Enable3DInterpolation(bool on)
{
// only to be called from the outside world
// just a redirection to OnInterpolationActivated
On3DInterpolationActivated(on);
}
void QmitkSlicesInterpolator::UpdateVisibleSuggestion()
{
mitk::RenderingManager::GetInstance()->RequestUpdateAll();
}
void QmitkSlicesInterpolator::OnInterpolationInfoChanged(const itk::EventObject & /*e*/)
{
// something (e.g. undo) changed the interpolation info, we should refresh our display
UpdateVisibleSuggestion();
}
void QmitkSlicesInterpolator::OnSurfaceInterpolationInfoChanged(const itk::EventObject & /*e*/)
{
if (m_3DInterpolationEnabled)
{
if (m_Watcher.isRunning())
m_Watcher.waitForFinished();
m_Future = QtConcurrent::run(this, &QmitkSlicesInterpolator::Run3DInterpolation);
m_Watcher.setFuture(m_Future);
}
}
void QmitkSlicesInterpolator::SetCurrentContourListID()
{
// New ContourList = hide current interpolation
Show3DInterpolationResult(false);
if (m_DataStorage.IsNotNull() && m_ToolManager && m_LastSNC)
{
mitk::DataNode *workingNode = m_ToolManager->GetWorkingData(0);
if (workingNode)
{
bool isInterpolationResult(false);
workingNode->GetBoolProperty("3DInterpolationResult", isInterpolationResult);
if (!isInterpolationResult)
{
QWidget::setEnabled(true);
const auto timePoint = m_LastSNC->GetSelectedTimePoint();
// In case the time is not valid use 0 to access the time geometry of the working node
unsigned int time_position = 0;
if (!workingNode->GetData()->GetTimeGeometry()->IsValidTimePoint(timePoint))
{
MITK_WARN << "Cannot accept interpolation. Time point selected by SliceNavigationController is not within the time bounds of WorkingImage. Time point: " << timePoint;
return;
}
time_position = workingNode->GetData()->GetTimeGeometry()->TimePointToTimeStep(timePoint);
mitk::Vector3D spacing = workingNode->GetData()->GetGeometry(time_position)->GetSpacing();
double minSpacing(100);
double maxSpacing(0);
for (int i = 0; i < 3; i++)
{
if (spacing[i] < minSpacing)
{
minSpacing = spacing[i];
}
if (spacing[i] > maxSpacing)
{
maxSpacing = spacing[i];
}
}
m_SurfaceInterpolator->SetMaxSpacing(maxSpacing);
m_SurfaceInterpolator->SetMinSpacing(minSpacing);
m_SurfaceInterpolator->SetDistanceImageVolume(50000);
mitk::Image *segmentationImage = dynamic_cast<mitk::Image *>(workingNode->GetData());
m_SurfaceInterpolator->SetCurrentInterpolationSession(segmentationImage);
m_SurfaceInterpolator->SetCurrentTimePoint(timePoint);
if (m_3DInterpolationEnabled)
{
if (m_Watcher.isRunning())
m_Watcher.waitForFinished();
m_Future = QtConcurrent::run(this, &QmitkSlicesInterpolator::Run3DInterpolation);
m_Watcher.setFuture(m_Future);
}
}
}
else
{
QWidget::setEnabled(false);
}
}
}
void QmitkSlicesInterpolator::Show3DInterpolationResult(bool status)
{
if (m_InterpolatedSurfaceNode.IsNotNull())
m_InterpolatedSurfaceNode->SetVisibility(status);
if (m_3DContourNode.IsNotNull())
m_3DContourNode->SetVisibility(
status, mitk::BaseRenderer::GetInstance(mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget3")));
mitk::RenderingManager::GetInstance()->RequestUpdateAll();
}
void QmitkSlicesInterpolator::CheckSupportedImageDimension()
{
if (m_ToolManager->GetWorkingData(0))
m_Segmentation = dynamic_cast<mitk::Image *>(m_ToolManager->GetWorkingData(0)->GetData());
/*if (m_3DInterpolationEnabled && m_Segmentation && m_Segmentation->GetDimension() != 3)
{
QMessageBox info;
info.setWindowTitle("3D Interpolation Process");
info.setIcon(QMessageBox::Information);
info.setText("3D Interpolation is only supported for 3D images at the moment!");
info.exec();
m_CmbInterpolation->setCurrentIndex(0);
}*/
}
void QmitkSlicesInterpolator::OnSliceNavigationControllerDeleted(const itk::Object *sender,
const itk::EventObject & /*e*/)
{
// Don't know how to avoid const_cast here?!
mitk::SliceNavigationController *slicer =
dynamic_cast<mitk::SliceNavigationController *>(const_cast<itk::Object *>(sender));
if (slicer)
{
m_ControllerToTimeObserverTag.remove(slicer);
m_ControllerToSliceObserverTag.remove(slicer);
m_ControllerToDeleteObserverTag.remove(slicer);
}
}
void QmitkSlicesInterpolator::WaitForFutures()
{
if (m_Watcher.isRunning())
{
m_Watcher.waitForFinished();
}
if (m_PlaneWatcher.isRunning())
{
m_PlaneWatcher.waitForFinished();
}
}
void QmitkSlicesInterpolator::NodeRemoved(const mitk::DataNode* node)
{
if ((m_ToolManager && m_ToolManager->GetWorkingData(0) == node) ||
node == m_3DContourNode ||
node == m_FeedbackNode ||
node == m_InterpolatedSurfaceNode)
{
WaitForFutures();
}
}