diff --git a/Core/Code/Algorithms/mitkExtractSliceFilter.cpp b/Core/Code/Algorithms/mitkExtractSliceFilter.cpp index 1862c4c708..753d8a3cd7 100644 --- a/Core/Code/Algorithms/mitkExtractSliceFilter.cpp +++ b/Core/Code/Algorithms/mitkExtractSliceFilter.cpp @@ -1,482 +1,482 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkExtractSliceFilter.h" #include #include #include #include #include #include #include mitk::ExtractSliceFilter::ExtractSliceFilter(vtkImageReslice* reslicer ){ if(reslicer == NULL){ m_Reslicer = vtkSmartPointer::New(); } else { m_Reslicer = reslicer; } m_TimeStep = 0; m_Reslicer->ReleaseDataFlagOn(); m_InterpolationMode = ExtractSliceFilter::RESLICE_NEAREST; m_ResliceTransform = NULL; m_InPlaneResampleExtentByGeometry = false; m_OutPutSpacing = new mitk::ScalarType[2]; m_OutputDimension = 2; m_ZSpacing = 1.0; m_ZMin = 0; m_ZMax = 0; m_VtkOutputRequested = false; } mitk::ExtractSliceFilter::~ExtractSliceFilter(){ m_ResliceTransform = NULL; m_WorldGeometry = NULL; delete [] m_OutPutSpacing; } void mitk::ExtractSliceFilter::GenerateOutputInformation(){ //TODO try figure out how to set the specs of the slice before it is actually extracted /*Image::Pointer output = this->GetOutput(); Image::ConstPointer input = this->GetInput(); if (input.IsNull()) return; unsigned int dimensions[2]; dimensions[0] = m_WorldGeometry->GetExtent(0); dimensions[1] = m_WorldGeometry->GetExtent(1); output->Initialize(input->GetPixelType(), 2, dimensions, 1);*/ } void mitk::ExtractSliceFilter::GenerateInputRequestedRegion(){ //As we want all pixel information fo the image in our plane, the requested region //is set to the largest possible region in the image. //This is needed because an oblique plane has a larger extent then the image //and the in pipeline it is checked via PropagateResquestedRegion(). But the //extent of the slice is actually fitting because it is oblique within the image. ImageToImageFilter::InputImagePointer input = const_cast< ImageToImageFilter::InputImageType* > ( this->GetInput() ); input->SetRequestedRegionToLargestPossibleRegion(); } mitk::ScalarType* mitk::ExtractSliceFilter::GetOutputSpacing(){ return m_OutPutSpacing; } void mitk::ExtractSliceFilter::GenerateData(){ mitk::Image *input = const_cast< mitk::Image * >( this->GetInput() ); if (!input) { MITK_ERROR << "mitk::ExtractSliceFilter: No input image available. Please set the input!" << std::endl; itkExceptionMacro("mitk::ExtractSliceFilter: No input image available. Please set the input!"); return; } if(!m_WorldGeometry) { MITK_ERROR << "mitk::ExtractSliceFilter: No Geometry for reslicing available." << std::endl; itkExceptionMacro("mitk::ExtractSliceFilter: No Geometry for reslicing available."); return; } const TimeGeometry* inputTimeGeometry = this->GetInput()->GetTimeGeometry(); if ( ( inputTimeGeometry == NULL ) || ( inputTimeGeometry->GetNumberOfTimeSteps() <= 0 ) ) { - itkWarningMacro(<<"Error reading input image TimeSlicedGeometry."); + itkWarningMacro(<<"Error reading input image TimeGeometry."); return; } // is it a valid timeStep? if ( inputTimeGeometry->IsValidTimeStep( m_TimeStep ) == false ) { itkWarningMacro(<<"This is not a valid timestep: "<< m_TimeStep ); return; } // check if there is something to display. if ( ! input->IsVolumeSet( m_TimeStep ) ) { itkWarningMacro(<<"No volume data existent at given timestep "<< m_TimeStep ); return; } /*================#BEGIN setup vtkImageRslice properties================*/ Point3D origin; Vector3D right, bottom, normal; double widthInMM, heightInMM; Vector2D extent; const PlaneGeometry* planeGeometry = dynamic_cast(m_WorldGeometry); if ( planeGeometry != NULL ) { //if the worldGeomatry is a PlaneGeometry everthing is straight forward origin = planeGeometry->GetOrigin(); right = planeGeometry->GetAxisVector( 0 ); bottom = planeGeometry->GetAxisVector( 1 ); normal = planeGeometry->GetNormal(); if ( m_InPlaneResampleExtentByGeometry ) { // Resampling grid corresponds to the current world geometry. This // means that the spacing of the output 2D image depends on the // currently selected world geometry, and *not* on the image itself. extent[0] = m_WorldGeometry->GetExtent( 0 ); extent[1] = m_WorldGeometry->GetExtent( 1 ); } else { // Resampling grid corresponds to the input geometry. This means that // the spacing of the output 2D image is directly derived from the // associated input image, regardless of the currently selected world // geometry. Vector3D rightInIndex, bottomInIndex; inputTimeGeometry->GetGeometryForTimeStep( m_TimeStep )->WorldToIndex( right, rightInIndex ); inputTimeGeometry->GetGeometryForTimeStep( m_TimeStep )->WorldToIndex( bottom, bottomInIndex ); extent[0] = rightInIndex.GetNorm(); extent[1] = bottomInIndex.GetNorm(); } // Get the extent of the current world geometry and calculate resampling // spacing therefrom. widthInMM = m_WorldGeometry->GetExtentInMM( 0 ); heightInMM = m_WorldGeometry->GetExtentInMM( 1 ); m_OutPutSpacing[0] = widthInMM / extent[0]; m_OutPutSpacing[1] = heightInMM / extent[1]; right.Normalize(); bottom.Normalize(); normal.Normalize(); /* * Transform the origin to center based coordinates. * Note: * This is needed besause vtk's origin is center based too (!!!) ( see 'The VTK book' page 88 ) * and the worldGeometry surrouding the image is no imageGeometry. So the worldGeometry * has its origin at the corner of the voxel and needs to be transformed. */ origin += right * ( m_OutPutSpacing[0] * 0.5 ); origin += bottom * ( m_OutPutSpacing[1] * 0.5 ); //set the tranform for reslicing. // Use inverse transform of the input geometry for reslicing the 3D image. // This is needed if the image volume already transformed if(m_ResliceTransform.IsNotNull()) m_Reslicer->SetResliceTransform(m_ResliceTransform->GetVtkTransform()->GetLinearInverse()); // Set background level to TRANSLUCENT (see Geometry2DDataVtkMapper3D), // else the background of the image turns out gray m_Reslicer->SetBackgroundLevel( -32768 ); } else{ //Code for curved planes, mostly taken 1:1 from imageVtkMapper2D and not tested yet. // Do we have an AbstractTransformGeometry? // This is the case for AbstractTransformGeometry's (e.g. a ThinPlateSplineCurvedGeometry ) const mitk::AbstractTransformGeometry* abstractGeometry = dynamic_cast< const AbstractTransformGeometry * >(m_WorldGeometry); if(abstractGeometry != NULL) { m_ResliceTransform = abstractGeometry; extent[0] = abstractGeometry->GetParametricExtent(0); extent[1] = abstractGeometry->GetParametricExtent(1); widthInMM = abstractGeometry->GetParametricExtentInMM(0); heightInMM = abstractGeometry->GetParametricExtentInMM(1); m_OutPutSpacing[0] = widthInMM / extent[0]; m_OutPutSpacing[1] = heightInMM / extent[1]; origin = abstractGeometry->GetPlane()->GetOrigin(); right = abstractGeometry->GetPlane()->GetAxisVector(0); right.Normalize(); bottom = abstractGeometry->GetPlane()->GetAxisVector(1); bottom.Normalize(); normal = abstractGeometry->GetPlane()->GetNormal(); normal.Normalize(); // Use a combination of the InputGeometry *and* the possible non-rigid // AbstractTransformGeometry for reslicing the 3D Image vtkSmartPointer composedResliceTransform = vtkSmartPointer::New(); composedResliceTransform->Identity(); composedResliceTransform->Concatenate( inputTimeGeometry->GetGeometryForTimeStep( m_TimeStep )->GetVtkTransform()->GetLinearInverse() ); composedResliceTransform->Concatenate( abstractGeometry->GetVtkAbstractTransform() ); m_Reslicer->SetResliceTransform( composedResliceTransform ); // Set background level to BLACK instead of translucent, to avoid // boundary artifacts (see Geometry2DDataVtkMapper3D) m_Reslicer->SetBackgroundLevel( -1023 ); } else { itkExceptionMacro("mitk::ExtractSliceFilter: No fitting geometry for reslice axis!"); return; } } if(m_ResliceTransform.IsNotNull()){ //if the resliceTransform is set the reslice axis are recalculated. //Thus the geometry information is not fitting. Therefor a unitSpacingFilter //is used to set up a global spacing of 1 and compensate the transform. vtkSmartPointer unitSpacingImageFilter = vtkSmartPointer::New() ; unitSpacingImageFilter->ReleaseDataFlagOn(); unitSpacingImageFilter->SetOutputSpacing( 1.0, 1.0, 1.0 ); unitSpacingImageFilter->SetInput( input->GetVtkImageData(m_TimeStep) ); m_Reslicer->SetInput(unitSpacingImageFilter->GetOutput() ); } else { //if no tranform is set the image can be used directly m_Reslicer->SetInput(input->GetVtkImageData(m_TimeStep)); } /*setup the plane where vktImageReslice extracts the slice*/ //ResliceAxesOrigin is the ancor point of the plane double originInVtk[3]; itk2vtk(origin, originInVtk); m_Reslicer->SetResliceAxesOrigin(originInVtk); //the cosines define the plane: x and y are the direction vectors, n is the planes normal //this specifies a matrix 3x3 // x1 y1 n1 // x2 y2 n2 // x3 y3 n3 double cosines[9]; vnl2vtk(right.GetVnlVector(), cosines);//x vnl2vtk(bottom.GetVnlVector(), cosines + 3);//y vnl2vtk(normal.GetVnlVector(), cosines + 6);//n m_Reslicer->SetResliceAxesDirectionCosines(cosines); //we only have one slice, not a volume m_Reslicer->SetOutputDimensionality(m_OutputDimension); //set the interpolation mode for slicing switch(this->m_InterpolationMode){ case RESLICE_NEAREST: m_Reslicer->SetInterpolationModeToNearestNeighbor(); break; case RESLICE_LINEAR: m_Reslicer->SetInterpolationModeToLinear(); break; case RESLICE_CUBIC: m_Reslicer->SetInterpolationModeToCubic(); default: //the default interpolation used by mitk m_Reslicer->SetInterpolationModeToNearestNeighbor(); } /*========== BEGIN setup extent of the slice ==========*/ int xMin, xMax, yMin, yMax; xMin = yMin = 0; xMax = static_cast< int >( extent[0]); yMax = static_cast< int >( extent[1]); vtkFloatingPointType sliceBounds[6]; if (m_WorldGeometry->GetReferenceGeometry()) { for ( int i = 0; i < 6; ++i ) { sliceBounds[i] = 0.0; } if (this->GetClippedPlaneBounds( m_WorldGeometry->GetReferenceGeometry(), planeGeometry, sliceBounds )) { // Calculate output extent (integer values) xMin = static_cast< int >( sliceBounds[0] / m_OutPutSpacing[0] + 0.5 ); xMax = static_cast< int >( sliceBounds[1] / m_OutPutSpacing[0] + 0.5 ); yMin = static_cast< int >( sliceBounds[2] / m_OutPutSpacing[1] + 0.5 ); yMax = static_cast< int >( sliceBounds[3] / m_OutPutSpacing[1] + 0.5 ); } // ELSE we use the default values } // Set the output extents! First included pixel index and last included pixel index // xMax and yMax are one after the last pixel. so they have to be decremented by 1. // In case we have a 2D image, xMax or yMax might be 0. in this case, do not decrement, but take 0. m_Reslicer->SetOutputExtent(xMin, std::max(0, xMax-1), yMin, std::max(0, yMax-1), m_ZMin, m_ZMax ); /*========== END setup extent of the slice ==========*/ m_Reslicer->SetOutputOrigin( 0.0, 0.0, 0.0 ); m_Reslicer->SetOutputSpacing( m_OutPutSpacing[0], m_OutPutSpacing[1], m_ZSpacing ); //TODO check the following lines, they are responsible wether vtk error outputs appear or not m_Reslicer->UpdateWholeExtent(); //this produces a bad allocation error for 2D images //m_Reslicer->GetOutput()->UpdateInformation(); //m_Reslicer->GetOutput()->SetUpdateExtentToWholeExtent(); //start the pipeline m_Reslicer->Update(); /*================ #END setup vtkImageRslice properties================*/ if(m_VtkOutputRequested){ return; //no converting to mitk //no mitk geometry will be set, as the output is vtkImageData only!!! } else { /*================ #BEGIN Get the slice from vtkImageReslice and convert it to mit::Image================*/ vtkImageData* reslicedImage; reslicedImage = m_Reslicer->GetOutput(); if(!reslicedImage) { itkWarningMacro(<<"Reslicer returned empty image"); return; } mitk::Image::Pointer resultImage = this->GetOutput(); //initialize resultimage with the specs of the vtkImageData object returned from vtkImageReslice if (reslicedImage->GetDataDimension() == 1) { // If original image was 2D, the slice might have an y extent of 0. // Still i want to ensure here that Image is 2D resultImage->Initialize(reslicedImage,1,-1,-1,1); } else { resultImage->Initialize(reslicedImage); } //transfer the voxel data resultImage->SetVolume(reslicedImage->GetScalarPointer()); //set the geometry from current worldgeometry for the reusultimage //this is needed that the image has the correct mitk geometry //the originalGeometry is the Geometry of the result slice AffineGeometryFrame3D::Pointer originalGeometryAGF = m_WorldGeometry->Clone(); Geometry2D::Pointer originalGeometry = dynamic_cast( originalGeometryAGF.GetPointer() ); originalGeometry->GetIndexToWorldTransform()->SetMatrix(m_WorldGeometry->GetIndexToWorldTransform()->GetMatrix()); //the origin of the worldGeometry is transformed to center based coordinates to be an imageGeometry Point3D sliceOrigin = originalGeometry->GetOrigin(); sliceOrigin += right * ( m_OutPutSpacing[0] * 0.5 ); sliceOrigin += bottom * ( m_OutPutSpacing[1] * 0.5 ); //a worldGeometry is no imageGeometry, thus it is manually set to true originalGeometry->ImageGeometryOn(); /*At this point we have to adjust the geometry because the origin isn't correct. The wrong origin is related to the rotation of the current world geometry plane. This causes errors on transfering world to index coordinates. We just shift the origin in each direction about the amount of the expanding (needed while rotating the plane). */ Vector3D axis0 = originalGeometry->GetAxisVector(0); Vector3D axis1 = originalGeometry->GetAxisVector(1); axis0.Normalize(); axis1.Normalize(); //adapt the origin. Note that for orthogonal planes the minima are '0' and thus the origin stays the same. sliceOrigin += (axis0 * (xMin * m_OutPutSpacing[0])) + (axis1 * (yMin * m_OutPutSpacing[1])); originalGeometry->SetOrigin(sliceOrigin); originalGeometry->Modified(); resultImage->SetGeometry( originalGeometry ); /*the bounds as well as the extent of the worldGeometry are not adapted correctly during crosshair rotation. This is only a quick fix and has to be evaluated. The new bounds are set via the max values of the calcuted slice extent. It will look like [ 0, x, 0, y, 0, 1]. */ mitk::BoundingBox::BoundsArrayType boundsCopy; boundsCopy[0] = boundsCopy[2] = boundsCopy[4] = 0; boundsCopy[5] = 1; boundsCopy[1] = xMax - xMin; boundsCopy[3] = yMax - yMin; resultImage->GetGeometry()->SetBounds(boundsCopy); /*================ #END Get the slice from vtkImageReslice and convert it to mitk Image================*/ } } bool mitk::ExtractSliceFilter::GetClippedPlaneBounds(vtkFloatingPointType bounds[6]){ if(!m_WorldGeometry || !this->GetInput()) return false; return this->GetClippedPlaneBounds(m_WorldGeometry->GetReferenceGeometry(), dynamic_cast< const PlaneGeometry * >( m_WorldGeometry ), bounds); } bool mitk::ExtractSliceFilter::GetClippedPlaneBounds( const Geometry3D *boundingGeometry, const PlaneGeometry *planeGeometry, vtkFloatingPointType *bounds ) { bool b = mitk::PlaneClipping::CalculateClippedPlaneBounds(boundingGeometry, planeGeometry, bounds); return b; } diff --git a/Core/Code/Common/mitkCoreObjectFactory.cpp b/Core/Code/Common/mitkCoreObjectFactory.cpp index 64f7f805dc..fa7bf90a60 100644 --- a/Core/Code/Common/mitkCoreObjectFactory.cpp +++ b/Core/Code/Common/mitkCoreObjectFactory.cpp @@ -1,403 +1,403 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkConfig.h" #include "mitkCoreObjectFactory.h" #include "mitkAffineInteractor.h" #include "mitkColorProperty.h" #include "mitkDataNode.h" #include "mitkEnumerationProperty.h" #include "mitkGeometry2DData.h" #include "mitkGeometry2DDataMapper2D.h" #include "mitkGeometry2DDataVtkMapper3D.h" #include "mitkGeometry3D.h" #include "mitkGeometryData.h" #include "mitkImage.h" #include #include "mitkLevelWindowProperty.h" #include "mitkLookupTable.h" #include "mitkLookupTableProperty.h" #include "mitkPlaneGeometry.h" #include "mitkPointSet.h" #include "mitkPointSetGLMapper2D.h" #include "mitkPointSetVtkMapper3D.h" #include "mitkPolyDataGLMapper2D.h" #include "mitkProperties.h" #include "mitkPropertyList.h" #include "mitkSlicedGeometry3D.h" #include "mitkSmartPointerProperty.h" #include "mitkStringProperty.h" #include "mitkSurface.h" #include "mitkSurface.h" #include "mitkSurfaceGLMapper2D.h" #include "mitkSurfaceVtkMapper3D.h" -#include "mitkTimeSlicedGeometry.h" +#include "mitkTimeGeometry.h" #include "mitkTransferFunctionProperty.h" #include "mitkVolumeDataVtkMapper3D.h" #include "mitkVtkInterpolationProperty.h" #include "mitkVtkRepresentationProperty.h" #include "mitkVtkResliceInterpolationProperty.h" //#include "mitkPicFileIOFactory.h" #include "mitkPointSetIOFactory.h" #include "mitkItkImageFileIOFactory.h" #include "mitkSTLFileIOFactory.h" #include "mitkVtkSurfaceIOFactory.h" #include "mitkVtkImageIOFactory.h" #include "mitkVtiFileIOFactory.h" //#include "mitkPicVolumeTimeSeriesIOFactory.h" #include "mitkImageWriterFactory.h" #include "mitkPointSetWriterFactory.h" #include "mitkSurfaceVtkWriterFactory.h" mitk::CoreObjectFactory::FileWriterList mitk::CoreObjectFactory::m_FileWriters; void mitk::CoreObjectFactory::RegisterExtraFactory(CoreObjectFactoryBase* factory) { MITK_DEBUG << "CoreObjectFactory: registering extra factory of type " << factory->GetNameOfClass(); m_ExtraFactories.insert(CoreObjectFactoryBase::Pointer(factory)); } void mitk::CoreObjectFactory::UnRegisterExtraFactory(CoreObjectFactoryBase *factory) { MITK_DEBUG << "CoreObjectFactory: un-registering extra factory of type " << factory->GetNameOfClass(); try { m_ExtraFactories.erase(factory); } catch( std::exception const& e) { MITK_ERROR << "Caugt exception while unregistering: " << e.what(); } } mitk::CoreObjectFactory::Pointer mitk::CoreObjectFactory::GetInstance() { static mitk::CoreObjectFactory::Pointer instance; if (instance.IsNull()) { instance = mitk::CoreObjectFactory::New(); } return instance; } #include void mitk::CoreObjectFactory::SetDefaultProperties(mitk::DataNode* node) { if(node==NULL) return; mitk::DataNode::Pointer nodePointer = node; mitk::Image::Pointer image = dynamic_cast(node->GetData()); if(image.IsNotNull() && image->IsInitialized()) { mitk::ImageVtkMapper2D::SetDefaultProperties(node); mitk::VolumeDataVtkMapper3D::SetDefaultProperties(node); } mitk::Surface::Pointer surface = dynamic_cast(node->GetData()); if(surface.IsNotNull()) { mitk::SurfaceGLMapper2D::SetDefaultProperties(node); mitk::SurfaceVtkMapper3D::SetDefaultProperties(node); } mitk::PointSet::Pointer pointSet = dynamic_cast(node->GetData()); if(pointSet.IsNotNull()) { mitk::PointSetGLMapper2D::SetDefaultProperties(node); mitk::PointSetVtkMapper3D::SetDefaultProperties(node); } for (ExtraFactoriesContainer::iterator it = m_ExtraFactories.begin(); it != m_ExtraFactories.end() ; it++ ) { (*it)->SetDefaultProperties(node); } } mitk::CoreObjectFactory::CoreObjectFactory() { static bool alreadyDone = false; if (!alreadyDone) { MITK_DEBUG << "CoreObjectFactory c'tor" << std::endl; // FIXME itk::ObjectFactoryBase::RegisterFactory( PicFileIOFactory::New() ); itk::ObjectFactoryBase::RegisterFactory( PointSetIOFactory::New() ); itk::ObjectFactoryBase::RegisterFactory( STLFileIOFactory::New() ); itk::ObjectFactoryBase::RegisterFactory( VtkSurfaceIOFactory::New() ); itk::ObjectFactoryBase::RegisterFactory( VtkImageIOFactory::New() ); itk::ObjectFactoryBase::RegisterFactory( VtiFileIOFactory::New() ); itk::ObjectFactoryBase::RegisterFactory( ItkImageFileIOFactory::New() ); // FIXME itk::ObjectFactoryBase::RegisterFactory( PicVolumeTimeSeriesIOFactory::New() ); mitk::SurfaceVtkWriterFactory::RegisterOneFactory(); mitk::PointSetWriterFactory::RegisterOneFactory(); mitk::ImageWriterFactory::RegisterOneFactory(); CreateFileExtensionsMap(); alreadyDone = true; } } mitk::Mapper::Pointer mitk::CoreObjectFactory::CreateMapper(mitk::DataNode* node, MapperSlotId id) { mitk::Mapper::Pointer newMapper = NULL; mitk::Mapper::Pointer tmpMapper = NULL; // check whether extra factories provide mapper for (ExtraFactoriesContainer::iterator it = m_ExtraFactories.begin(); it != m_ExtraFactories.end() ; it++ ) { tmpMapper = (*it)->CreateMapper(node,id); if(tmpMapper.IsNotNull()) newMapper = tmpMapper; } if (newMapper.IsNull()) { mitk::BaseData *data = node->GetData(); if ( id == mitk::BaseRenderer::Standard2D ) { if((dynamic_cast(data)!=NULL)) { newMapper = mitk::ImageVtkMapper2D::New(); newMapper->SetDataNode(node); } else if((dynamic_cast(data)!=NULL)) { newMapper = mitk::Geometry2DDataMapper2D::New(); newMapper->SetDataNode(node); } else if((dynamic_cast(data)!=NULL)) { newMapper = mitk::SurfaceGLMapper2D::New(); // cast because SetDataNode is not virtual mitk::SurfaceGLMapper2D *castedMapper = dynamic_cast(newMapper.GetPointer()); castedMapper->SetDataNode(node); } else if((dynamic_cast(data)!=NULL)) { newMapper = mitk::PointSetGLMapper2D::New(); newMapper->SetDataNode(node); } } else if ( id == mitk::BaseRenderer::Standard3D ) { if((dynamic_cast(data) != NULL)) { newMapper = mitk::VolumeDataVtkMapper3D::New(); newMapper->SetDataNode(node); } else if((dynamic_cast(data)!=NULL)) { newMapper = mitk::Geometry2DDataVtkMapper3D::New(); newMapper->SetDataNode(node); } else if((dynamic_cast(data)!=NULL)) { newMapper = mitk::SurfaceVtkMapper3D::New(); newMapper->SetDataNode(node); } else if((dynamic_cast(data)!=NULL)) { newMapper = mitk::PointSetVtkMapper3D::New(); newMapper->SetDataNode(node); } } } return newMapper; } /* // @deprecated // #define EXTERNAL_FILE_EXTENSIONS \ "All known formats(*.dcm *.DCM *.dc3 *.DC3 *.gdcm *.ima *.mhd *.mps *.nii *.pic *.pic.gz *.bmp *.png *.jpg *.tiff *.pvtk *.stl *.vtk *.vtp *.vtu *.obj *.vti *.hdr *.nrrd *.nhdr );;" \ "DICOM files(*.dcm *.DCM *.dc3 *.DC3 *.gdcm);;" \ "DKFZ Pic (*.seq *.pic *.pic.gz *.seq.gz);;" \ "NRRD Vector Images (*.nrrd *.nhdr);;" \ "Point sets (*.mps);;" \ "Sets of 2D slices (*.pic *.pic.gz *.bmp *.png *.dcm *.gdcm *.ima *.tiff);;" \ "Surface files (*.stl *.vtk *.vtp *.obj);;" \ "NIfTI format (*.nii)" #define SAVE_FILE_EXTENSIONS "all (*.pic *.mhd *.vtk *.vti *.hdr *.png *.tiff *.jpg *.hdr *.bmp *.dcm *.gipl *.nii *.nrrd *.nhdr *.spr *.lsm *.dwi *.hdwi *.qbi *.hqbi)" */ /** * @brief This method gets the supported (open) file extensions as string. This string is can then used by the QT QFileDialog widget. * @return The c-string that contains the file extensions * */ const char* mitk::CoreObjectFactory::GetFileExtensions() { MultimapType aMap; for (ExtraFactoriesContainer::iterator it = m_ExtraFactories.begin(); it != m_ExtraFactories.end() ; it++ ) { aMap = (*it)->GetFileExtensionsMap(); this->MergeFileExtensions(m_FileExtensionsMap, aMap); } this->CreateFileExtensions(m_FileExtensionsMap, m_FileExtensions); return m_FileExtensions.c_str(); } /** * @brief Merge the input map into the fileExtensionsMap. Duplicate entries are removed * @param fileExtensionsMap the existing map, it contains value pairs like ("*.dcm", "DICOM files"),("*.dc3", "DICOM files"). * This map is extented/merged with the values from the input map. * @param inputMap the input map, it contains value pairs like ("*.dcm", "DICOM files"),("*.dc3", "DICOM files") returned by * the extra factories. * */ void mitk::CoreObjectFactory::MergeFileExtensions(MultimapType& fileExtensionsMap, MultimapType inputMap) { bool duplicateFound = false; std::pair pairOfIter; for (MultimapType::iterator it = inputMap.begin(); it != inputMap.end(); ++it) { duplicateFound = false; pairOfIter = fileExtensionsMap.equal_range((*it).first); for (MultimapType::iterator it2 = pairOfIter.first; it2 != pairOfIter.second; ++it2) { //cout << " [" << (*it).first << ", " << (*it).second << "]" << endl; std::string aString = (*it2).second; if (aString.compare((*it).second) == 0) { //cout << " DUP!! [" << (*it).first << ", " << (*it).second << "]" << endl; duplicateFound = true; break; } } if (!duplicateFound) { fileExtensionsMap.insert(std::pair((*it).first, (*it).second)); } } } /** * @brief get the defined (open) file extension map * @return the defined (open) file extension map */ mitk::CoreObjectFactoryBase::MultimapType mitk::CoreObjectFactory::GetFileExtensionsMap() { return m_FileExtensionsMap; } /** * @brief initialize the file extension entries for open and save */ void mitk::CoreObjectFactory::CreateFileExtensionsMap() { m_FileExtensionsMap.insert(std::pair("*.dcm", "DICOM files")); m_FileExtensionsMap.insert(std::pair("*.DCM", "DICOM files")); m_FileExtensionsMap.insert(std::pair("*.dc3", "DICOM files")); m_FileExtensionsMap.insert(std::pair("*.DC3", "DICOM files")); m_FileExtensionsMap.insert(std::pair("*.gdcm", "DICOM files")); m_FileExtensionsMap.insert(std::pair("*.seq", "DKFZ Pic")); m_FileExtensionsMap.insert(std::pair("*.pic", "DKFZ Pic")); m_FileExtensionsMap.insert(std::pair("*.pic.gz", "DKFZ Pic")); m_FileExtensionsMap.insert(std::pair("*.mhd", "MetaImage")); m_FileExtensionsMap.insert(std::pair("*.seq.gz", "DKFZ Pic")); m_FileExtensionsMap.insert(std::pair("*.hdr", "Analyze Format")); m_FileExtensionsMap.insert(std::pair("*.img", "Analyze Format")); m_FileExtensionsMap.insert(std::pair("*.img.gz", "Analyze Format")); m_FileExtensionsMap.insert(std::pair("*.nrrd", "Nearly Raw Raster Data")); m_FileExtensionsMap.insert(std::pair("*.nhdr", "NRRD with detached header")); m_FileExtensionsMap.insert(std::pair("*.mps", "Point sets")); m_FileExtensionsMap.insert(std::pair("*.pic", "Sets of 2D slices")); m_FileExtensionsMap.insert(std::pair("*.pic.gz", "Sets of 2D slices")); m_FileExtensionsMap.insert(std::pair("*.bmp", "Sets of 2D slices")); m_FileExtensionsMap.insert(std::pair("*.png", "Sets of 2D slices")); m_FileExtensionsMap.insert(std::pair("*.jpg", "Sets of 2D slices")); m_FileExtensionsMap.insert(std::pair("*.jpeg", "Sets of 2D slices")); m_FileExtensionsMap.insert(std::pair("*.dcm", "Sets of 2D slices")); m_FileExtensionsMap.insert(std::pair("*.gdcm", "Sets of 2D slices")); m_FileExtensionsMap.insert(std::pair("*.ima", "Sets of 2D slices")); m_FileExtensionsMap.insert(std::pair("*.tiff", "Sets of 2D slices")); m_FileExtensionsMap.insert(std::pair("*.tif", "Sets of 2D slices")); m_FileExtensionsMap.insert(std::pair("*.stl", "Surface files")); m_FileExtensionsMap.insert(std::pair("*.vtk", "Surface files")); m_FileExtensionsMap.insert(std::pair("*.vtp", "Surface files")); m_FileExtensionsMap.insert(std::pair("*.obj", "Surface files")); m_FileExtensionsMap.insert(std::pair("*.nii", "NIfTI format")); m_FileExtensionsMap.insert(std::pair("*.nii.gz", "NIfTI format")); //m_SaveFileExtensionsMap.insert(std::pair("*.pic", "DKFZ Pic")); m_SaveFileExtensionsMap.insert(std::pair("*.mhd", "MetaImage")); m_SaveFileExtensionsMap.insert(std::pair("*.vtk", "Surface Files")); m_SaveFileExtensionsMap.insert(std::pair("*.vti", "VTK Image Data Files")); m_SaveFileExtensionsMap.insert(std::pair("*.hdr", "Analyze Format")); m_SaveFileExtensionsMap.insert(std::pair("*.png", "Sets of 2D slices")); m_SaveFileExtensionsMap.insert(std::pair("*.tiff", "Sets of 2D slices")); m_SaveFileExtensionsMap.insert(std::pair("*.tif", "Sets of 2D slices")); m_SaveFileExtensionsMap.insert(std::pair("*.jpg", "Sets of 2D slices")); m_SaveFileExtensionsMap.insert(std::pair("*.jpeg", "Sets of 2D slices")); m_SaveFileExtensionsMap.insert(std::pair("*.bmp", "Sets of 2D slices")); m_SaveFileExtensionsMap.insert(std::pair("*.dcm", "Sets of 2D slices")); m_SaveFileExtensionsMap.insert(std::pair("*.gipl", "UMDS GIPL Format Files")); m_SaveFileExtensionsMap.insert(std::pair("*.nii", "NIfTI format")); m_SaveFileExtensionsMap.insert(std::pair("*.nrrd", "Nearly Raw Raster Data")); m_SaveFileExtensionsMap.insert(std::pair("*.nhdr", "NRRD with detached header")); m_SaveFileExtensionsMap.insert(std::pair("*.lsm", "Microscope Images")); m_SaveFileExtensionsMap.insert(std::pair("*.dwi", "Diffusion Weighted Images")); m_SaveFileExtensionsMap.insert(std::pair("*.hdwi", "Diffusion Weighted Images")); m_SaveFileExtensionsMap.insert(std::pair("*.qbi", "Q-Ball Images")); m_SaveFileExtensionsMap.insert(std::pair("*.hqbi", "Q-Ball Images")); } /** * @brief This method gets the supported (save) file extensions as string. This string is can then used by the QT QFileDialog widget. * @return The c-string that contains the (save) file extensions * */ const char* mitk::CoreObjectFactory::GetSaveFileExtensions() { MultimapType aMap; for (ExtraFactoriesContainer::iterator it = m_ExtraFactories.begin(); it != m_ExtraFactories.end() ; it++ ) { aMap = (*it)->GetSaveFileExtensionsMap(); this->MergeFileExtensions(m_SaveFileExtensionsMap, aMap); } this->CreateFileExtensions(m_SaveFileExtensionsMap, m_SaveFileExtensions); return m_SaveFileExtensions.c_str(); }; /** * @brief get the defined (save) file extension map * @return the defined (save) file extension map */ mitk::CoreObjectFactoryBase::MultimapType mitk::CoreObjectFactory::GetSaveFileExtensionsMap() { return m_SaveFileExtensionsMap; } mitk::CoreObjectFactory::FileWriterList mitk::CoreObjectFactory::GetFileWriters() { FileWriterList allWriters = m_FileWriters; for (ExtraFactoriesContainer::iterator it = m_ExtraFactories.begin(); it != m_ExtraFactories.end() ; it++ ) { FileWriterList list2 = (*it)->GetFileWriters(); allWriters.merge(list2); } return allWriters; } void mitk::CoreObjectFactory::MapEvent(const mitk::Event*, const int) { } diff --git a/Core/Code/Controllers/mitkRenderingManager.cpp b/Core/Code/Controllers/mitkRenderingManager.cpp index 2f6a1cb4b5..b5e5f02232 100644 --- a/Core/Code/Controllers/mitkRenderingManager.cpp +++ b/Core/Code/Controllers/mitkRenderingManager.cpp @@ -1,1049 +1,1057 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkRenderingManager.h" #include "mitkRenderingManagerFactory.h" #include "mitkBaseRenderer.h" #include "mitkGlobalInteraction.h" #include #include #include "mitkVector.h" #include #include #include #include namespace mitk { RenderingManager::Pointer RenderingManager::s_Instance = 0; RenderingManagerFactory *RenderingManager::s_RenderingManagerFactory = 0; RenderingManager ::RenderingManager() : m_UpdatePending( false ), m_MaxLOD( 1 ), m_LODIncreaseBlocked( false ), m_LODAbortMechanismEnabled( false ), m_ClippingPlaneEnabled( false ), m_TimeNavigationController( SliceNavigationController::New("dummy") ), m_DataStorage( NULL ), m_ConstrainedPaddingZooming ( true ) { m_ShadingEnabled.assign( 3, false ); m_ShadingValues.assign( 4, 0.0 ); m_GlobalInteraction = mitk::GlobalInteraction::GetInstance(); InitializePropertyList(); } RenderingManager ::~RenderingManager() { // Decrease reference counts of all registered vtkRenderWindows for // proper destruction RenderWindowVector::iterator it; for ( it = m_AllRenderWindows.begin(); it != m_AllRenderWindows.end(); ++it ) { (*it)->UnRegister( NULL ); RenderWindowCallbacksList::iterator callbacks_it = this->m_RenderWindowCallbacksList.find(*it); if (callbacks_it != this->m_RenderWindowCallbacksList.end()) { (*it)->RemoveObserver(callbacks_it->second.commands[0u]); (*it)->RemoveObserver(callbacks_it->second.commands[1u]); (*it)->RemoveObserver(callbacks_it->second.commands[2u]); } } } void RenderingManager ::SetFactory( RenderingManagerFactory *factory ) { s_RenderingManagerFactory = factory; } const RenderingManagerFactory * RenderingManager ::GetFactory() { return s_RenderingManagerFactory; } bool RenderingManager ::HasFactory() { if ( RenderingManager::s_RenderingManagerFactory ) { return true; } else { return false; } } RenderingManager::Pointer RenderingManager ::New() { const RenderingManagerFactory* factory = GetFactory(); if(factory == NULL) return NULL; return factory->CreateRenderingManager(); } RenderingManager * RenderingManager ::GetInstance() { if ( !RenderingManager::s_Instance ) { if ( s_RenderingManagerFactory ) { s_Instance = s_RenderingManagerFactory->CreateRenderingManager(); } } return s_Instance; } bool RenderingManager ::IsInstantiated() { if ( RenderingManager::s_Instance ) return true; else return false; } void RenderingManager ::AddRenderWindow( vtkRenderWindow *renderWindow ) { if ( renderWindow && (m_RenderWindowList.find( renderWindow ) == m_RenderWindowList.end()) ) { m_RenderWindowList[renderWindow] = RENDERING_INACTIVE; m_AllRenderWindows.push_back( renderWindow ); if ( m_DataStorage.IsNotNull() ) mitk::BaseRenderer::GetInstance( renderWindow )->SetDataStorage( m_DataStorage.GetPointer() ); // Register vtkRenderWindow instance renderWindow->Register( NULL ); typedef itk::MemberCommand< RenderingManager > MemberCommandType; // Add callbacks for rendering abort mechanism //BaseRenderer *renderer = BaseRenderer::GetInstance( renderWindow ); vtkCallbackCommand *startCallbackCommand = vtkCallbackCommand::New(); startCallbackCommand->SetCallback( RenderingManager::RenderingStartCallback ); renderWindow->AddObserver( vtkCommand::StartEvent, startCallbackCommand ); vtkCallbackCommand *progressCallbackCommand = vtkCallbackCommand::New(); progressCallbackCommand->SetCallback( RenderingManager::RenderingProgressCallback ); renderWindow->AddObserver( vtkCommand::AbortCheckEvent, progressCallbackCommand ); vtkCallbackCommand *endCallbackCommand = vtkCallbackCommand::New(); endCallbackCommand->SetCallback( RenderingManager::RenderingEndCallback ); renderWindow->AddObserver( vtkCommand::EndEvent, endCallbackCommand ); RenderWindowCallbacks callbacks; callbacks.commands[0u] = startCallbackCommand; callbacks.commands[1u] = progressCallbackCommand; callbacks.commands[2u] = endCallbackCommand; this->m_RenderWindowCallbacksList[renderWindow] = callbacks; //Delete vtk variables correctly startCallbackCommand->Delete(); progressCallbackCommand->Delete(); endCallbackCommand->Delete(); } } void RenderingManager ::RemoveRenderWindow( vtkRenderWindow *renderWindow ) { if (m_RenderWindowList.erase( renderWindow )) { RenderWindowCallbacksList::iterator callbacks_it = this->m_RenderWindowCallbacksList.find(renderWindow); if(callbacks_it != this->m_RenderWindowCallbacksList.end()) { renderWindow->RemoveObserver(callbacks_it->second.commands[0u]); renderWindow->RemoveObserver(callbacks_it->second.commands[1u]); renderWindow->RemoveObserver(callbacks_it->second.commands[2u]); this->m_RenderWindowCallbacksList.erase(callbacks_it); } RenderWindowVector::iterator rw_it = std::find( m_AllRenderWindows.begin(), m_AllRenderWindows.end(), renderWindow ); if(rw_it != m_AllRenderWindows.end()) { // Decrease reference count for proper destruction (*rw_it)->UnRegister(NULL); m_AllRenderWindows.erase( rw_it ); } } } const RenderingManager::RenderWindowVector& RenderingManager ::GetAllRegisteredRenderWindows() { return m_AllRenderWindows; } void RenderingManager ::RequestUpdate( vtkRenderWindow *renderWindow ) { // If the renderWindow is not valid, we do not want to inadvertantly create // an entry in the m_RenderWindowList map. It is possible if the user is // regularly calling AddRenderer and RemoveRenderer for a rendering update // to come into this method with a renderWindow pointer that is valid in the // sense that the window does exist within the application, but that // renderWindow has been temporarily removed from this RenderingManager for // performance reasons. if (m_RenderWindowList.find( renderWindow ) == m_RenderWindowList.end()) { return; } m_RenderWindowList[renderWindow] = RENDERING_REQUESTED; if ( !m_UpdatePending ) { m_UpdatePending = true; this->GenerateRenderingRequestEvent(); } } void RenderingManager ::ForceImmediateUpdate( vtkRenderWindow *renderWindow ) { // If the renderWindow is not valid, we do not want to inadvertantly create // an entry in the m_RenderWindowList map. It is possible if the user is // regularly calling AddRenderer and RemoveRenderer for a rendering update // to come into this method with a renderWindow pointer that is valid in the // sense that the window does exist within the application, but that // renderWindow has been temporarily removed from this RenderingManager for // performance reasons. if (m_RenderWindowList.find( renderWindow ) == m_RenderWindowList.end()) { return; } // Erase potentially pending requests for this window m_RenderWindowList[renderWindow] = RENDERING_INACTIVE; m_UpdatePending = false; // Immediately repaint this window (implementation platform specific) // If the size is 0 it crahses int *size = renderWindow->GetSize(); if ( 0 != size[0] && 0 != size[1] ) { //prepare the camera etc. before rendering //Note: this is a very important step which should be called before the VTK render! //If you modify the camera anywhere else or after the render call, the scene cannot be seen. mitk::VtkPropRenderer *vPR = dynamic_cast(mitk::BaseRenderer::GetInstance( renderWindow )); if(vPR) vPR->PrepareRender(); // Execute rendering renderWindow->Render(); } } void RenderingManager ::RequestUpdateAll( RequestType type ) { RenderWindowList::iterator it; for ( it = m_RenderWindowList.begin(); it != m_RenderWindowList.end(); ++it ) { int id = BaseRenderer::GetInstance(it->first)->GetMapperID(); if ( (type == REQUEST_UPDATE_ALL) || ((type == REQUEST_UPDATE_2DWINDOWS) && (id == 1)) || ((type == REQUEST_UPDATE_3DWINDOWS) && (id == 2)) ) { this->RequestUpdate( it->first ); } } } void RenderingManager ::ForceImmediateUpdateAll( RequestType type ) { RenderWindowList::iterator it; for ( it = m_RenderWindowList.begin(); it != m_RenderWindowList.end(); ++it ) { int id = BaseRenderer::GetInstance(it->first)->GetMapperID(); if ( (type == REQUEST_UPDATE_ALL) || ((type == REQUEST_UPDATE_2DWINDOWS) && (id == 1)) || ((type == REQUEST_UPDATE_3DWINDOWS) && (id == 2)) ) { // Immediately repaint this window (implementation platform specific) // If the size is 0, it crashes this->ForceImmediateUpdate(it->first); // int *size = it->first->GetSize(); // if ( 0 != size[0] && 0 != size[1] ) // { // //prepare the camera before rendering // //Note: this is a very important step which should be called before the VTK render! // //If you modify the camera anywhere else or after the render call, the scene cannot be seen. // mitk::VtkPropRenderer *vPR = // dynamic_cast(mitk::BaseRenderer::GetInstance( it->first )); // if(vPR) // vPR->PrepareRender(); // // Execute rendering // it->first->Render(); // } // it->second = RENDERING_INACTIVE; } } //m_UpdatePending = false; } //bool RenderingManager::InitializeViews( const mitk::DataStorage * storage, const DataNode* node = NULL, RequestType type, bool preserveRoughOrientationInWorldSpace ) //{ // mitk::Geometry3D::Pointer geometry; // if ( storage != NULL ) // { // geometry = storage->ComputeVisibleBoundingGeometry3D(node, "visible", NULL, "includeInBoundingBox" ); // // if ( geometry.IsNotNull() ) // { // // let's see if we have data with a limited live-span ... // mitk::TimeBounds timebounds = geometry->GetTimeBounds(); // if ( timebounds[1] < mitk::ScalarTypeNumericTraits::max() ) // { // mitk::ScalarType duration = timebounds[1]-timebounds[0]; // // mitk::TimeSlicedGeometry::Pointer timegeometry = // mitk::TimeSlicedGeometry::New(); // timegeometry->InitializeEvenlyTimed( // geometry, (unsigned int) duration ); // timegeometry->SetTimeBounds( timebounds ); // // timebounds[1] = timebounds[0] + 1.0; // geometry->SetTimeBounds( timebounds ); // // geometry = timegeometry; // } // } // } // // // Use geometry for initialization // return this->InitializeViews( geometry.GetPointer(), type ); //} //TODO_GOETZ // Remove old function, so only this one is working. bool RenderingManager -::InitializeViews( const TimeGeometry * dataGeometry, RequestType type, bool preserveRoughOrientationInWorldSpace ) +::InitializeViews( const Geometry3D * dataGeometry, RequestType type, bool preserveRoughOrientationInWorldSpace ) { - assert(false); //Function is not working - assert(true); // Function is not working. - - /* - There is the problem in the original function, that geometry is assigned twice - so the first half of the code has no effect. Done on purpose? - */ - return false; + ProportionalTimeGeometry::Pointer propTimeGeometry = ProportionalTimeGeometry::New(); + propTimeGeometry->Initialize(dynamic_cast(dataGeometry->Clone().GetPointer()), 1); + return InitializeViews(propTimeGeometry,type, preserveRoughOrientationInWorldSpace); } bool RenderingManager -::InitializeViews( const Geometry3D * dataGeometry, RequestType type, bool preserveRoughOrientationInWorldSpace ) +::InitializeViews( const TimeGeometry * dataGeometry, RequestType type, bool preserveRoughOrientationInWorldSpace ) { MITK_DEBUG << "initializing views"; bool boundingBoxInitialized = false; - Geometry3D::ConstPointer geometry = dataGeometry; + TimeGeometry::ConstPointer timeGeometry = dataGeometry; + TimeGeometry::Pointer modifiedGeometry = dataGeometry->Clone().GetPointer(); + + // //TODO_GOETZ previously this code section has been disabled by + // a later asignment to geometry (e.g. timeGeometry) + // This has been fixed during Geometry-1-Plattform Project + // Propably this code is not working anymore, test!! + /* if (dataGeometry && preserveRoughOrientationInWorldSpace) { - // clone the input geometry - Geometry3D::Pointer modifiedGeometry = dynamic_cast( dataGeometry->Clone().GetPointer() ); assert(modifiedGeometry.IsNotNull()); // construct an affine transform from it AffineGeometryFrame3D::TransformType::Pointer transform = AffineGeometryFrame3D::TransformType::New(); - assert( modifiedGeometry->GetIndexToWorldTransform() ); - transform->SetMatrix( modifiedGeometry->GetIndexToWorldTransform()->GetMatrix() ); - transform->SetOffset( modifiedGeometry->GetIndexToWorldTransform()->GetOffset() ); + assert( modifiedGeometry->GetGeometryForTimeStep(0)->GetIndexToWorldTransform() ); + transform->SetMatrix( modifiedGeometry->GetGeometryForTimeStep(0)->GetIndexToWorldTransform()->GetMatrix() ); + transform->SetOffset( modifiedGeometry->GetGeometryForTimeStep(0)->GetIndexToWorldTransform()->GetOffset() ); // get transform matrix AffineGeometryFrame3D::TransformType::MatrixType::InternalMatrixType& oldMatrix = const_cast< AffineGeometryFrame3D::TransformType::MatrixType::InternalMatrixType& > ( transform->GetMatrix().GetVnlMatrix() ); AffineGeometryFrame3D::TransformType::MatrixType::InternalMatrixType newMatrix(oldMatrix); // get offset and bound Vector3D offset = modifiedGeometry->GetIndexToWorldTransform()->GetOffset(); Geometry3D::BoundsArrayType oldBounds = modifiedGeometry->GetBounds(); Geometry3D::BoundsArrayType newBounds = modifiedGeometry->GetBounds(); // get rid of rotation other than pi/2 degree for ( unsigned int i = 0; i < 3; ++i ) { // i-th column of the direction matrix Vector3D currentVector; currentVector[0] = oldMatrix(0,i); currentVector[1] = oldMatrix(1,i); currentVector[2] = oldMatrix(2,i); // matchingRow will store the row that holds the biggest // value in the column unsigned int matchingRow = 0; // maximum value in the column float max = std::numeric_limits::min(); // sign of the maximum value (-1 or 1) int sign = 1; // iterate through the column vector for (unsigned int dim = 0; dim < 3; ++dim) { if ( fabs(currentVector[dim]) > max ) { matchingRow = dim; max = fabs(currentVector[dim]); if(currentVector[dim]<0) sign = -1; else sign = 1; } } // in case we found a negative maximum, // we negate the column and adjust the offset // (in order to run through the dimension in the opposite direction) if(sign == -1) { currentVector *= sign; offset += modifiedGeometry->GetAxisVector(i); } // matchingRow is now used as column index to place currentVector // correctly in the new matrix vnl_vector newMatrixColumn(3); newMatrixColumn[0] = currentVector[0]; newMatrixColumn[1] = currentVector[1]; newMatrixColumn[2] = currentVector[2]; newMatrix.set_column( matchingRow, newMatrixColumn ); // if a column is moved, we also have to adjust the bounding // box accordingly, this is done here newBounds[2*matchingRow ] = oldBounds[2*i ]; newBounds[2*matchingRow+1] = oldBounds[2*i+1]; } // set the newly calculated bounds array modifiedGeometry->SetBounds(newBounds); // set new offset and direction matrix AffineGeometryFrame3D::TransformType::MatrixType newMatrixITK( newMatrix ); transform->SetMatrix( newMatrixITK ); transform->SetOffset( offset ); modifiedGeometry->SetIndexToWorldTransform( transform ); geometry = modifiedGeometry; - } + }*/ int warningLevel = vtkObject::GetGlobalWarningDisplay(); vtkObject::GlobalWarningDisplayOff(); - if ( (geometry.IsNotNull() ) && (const_cast< mitk::BoundingBox * >( - geometry->GetBoundingBox())->GetDiagonalLength2() > mitk::eps) ) + if ( (timeGeometry.IsNotNull() ) && (const_cast< mitk::BoundingBox * >( + timeGeometry->GetBoundingBoxInWorld())->GetDiagonalLength2() > mitk::eps) ) { boundingBoxInitialized = true; } - if (geometry.IsNotNull() ) + if (timeGeometry.IsNotNull() ) {// make sure bounding box has an extent bigger than zero in any direction // clone the input geometry - Geometry3D::Pointer modifiedGeometry = dynamic_cast( dataGeometry->Clone().GetPointer() ); + //Old Geometry3D::Pointer modifiedGeometry = dynamic_cast( dataGeometry->Clone().GetPointer() ); assert(modifiedGeometry.IsNotNull()); - Geometry3D::BoundsArrayType newBounds = modifiedGeometry->GetBounds(); - for( unsigned int dimension = 0; ( 2 * dimension ) < newBounds.Size() ; dimension++ ) + for (TimeStepType step = 0; step < modifiedGeometry->GetNumberOfTimeSteps(); ++step) { - //check for equality but for an epsilon - if( Equal( newBounds[ 2 * dimension ], newBounds[ 2 * dimension + 1 ] ) ) + Geometry3D::BoundsArrayType newBounds = modifiedGeometry->GetGeometryForTimeStep(step)->GetBounds(); + for( unsigned int dimension = 0; ( 2 * dimension ) < newBounds.Size() ; dimension++ ) { - newBounds[ 2 * dimension + 1 ] += 1; + //check for equality but for an epsilon + if( Equal( newBounds[ 2 * dimension ], newBounds[ 2 * dimension + 1 ] ) ) + { + newBounds[ 2 * dimension + 1 ] += 1; + } } + modifiedGeometry->GetGeometryForTimeStep(step)->SetBounds(newBounds); } - - // set the newly calculated bounds array - modifiedGeometry->SetBounds(newBounds); - - geometry = modifiedGeometry; } + timeGeometry = modifiedGeometry; RenderWindowList::iterator it; for ( it = m_RenderWindowList.begin(); it != m_RenderWindowList.end(); ++it ) { mitk::BaseRenderer *baseRenderer = mitk::BaseRenderer::GetInstance( it->first ); baseRenderer->GetDisplayGeometry()->SetConstrainZoomingAndPanning(m_ConstrainedPaddingZooming); int id = baseRenderer->GetMapperID(); if ( ((type == REQUEST_UPDATE_ALL) || ((type == REQUEST_UPDATE_2DWINDOWS) && (id == 1)) || ((type == REQUEST_UPDATE_3DWINDOWS) && (id == 2))) ) { - this->InternalViewInitialization( baseRenderer, geometry, + this->InternalViewInitialization( baseRenderer, timeGeometry, boundingBoxInitialized, id ); } } if ( boundingBoxInitialized ) { - m_TimeNavigationController->SetInputWorldGeometry( geometry ); + m_TimeNavigationController->SetInputWorldTimeGeometry( timeGeometry ); } m_TimeNavigationController->Update(); this->RequestUpdateAll( type ); vtkObject::SetGlobalWarningDisplay( warningLevel ); // Inform listeners that views have been initialized this->InvokeEvent( mitk::RenderingManagerViewsInitializedEvent() ); return boundingBoxInitialized; } bool RenderingManager ::InitializeViews( RequestType type ) { RenderWindowList::iterator it; for ( it = m_RenderWindowList.begin(); it != m_RenderWindowList.end(); ++it ) { mitk::BaseRenderer *baseRenderer = mitk::BaseRenderer::GetInstance( it->first ); int id = baseRenderer->GetMapperID(); if ( (type == REQUEST_UPDATE_ALL) || ((type == REQUEST_UPDATE_2DWINDOWS) && (id == 1)) || ((type == REQUEST_UPDATE_3DWINDOWS) && (id == 2)) ) { mitk::SliceNavigationController *nc = baseRenderer->GetSliceNavigationController(); // Re-initialize view direction nc->SetViewDirectionToDefault(); // Update the SNC nc->Update(); } } this->RequestUpdateAll( type ); return true; } //bool RenderingManager::InitializeView( vtkRenderWindow * renderWindow, const DataStorage* ds, const DataNode node = NULL, bool initializeGlobalTimeSNC ) //{ // mitk::Geometry3D::Pointer geometry; // if ( ds != NULL ) // { // geometry = ds->ComputeVisibleBoundingGeometry3D(node, NULL, "includeInBoundingBox" ); // // if ( geometry.IsNotNull() ) // { // // let's see if we have data with a limited live-span ... // mitk::TimeBounds timebounds = geometry->GetTimeBounds(); // if ( timebounds[1] < mitk::ScalarTypeNumericTraits::max() ) // { // mitk::ScalarType duration = timebounds[1]-timebounds[0]; // // mitk::TimeSlicedGeometry::Pointer timegeometry = // mitk::TimeSlicedGeometry::New(); // timegeometry->InitializeEvenlyTimed( // geometry, (unsigned int) duration ); // timegeometry->SetTimeBounds( timebounds ); // // timebounds[1] = timebounds[0] + 1.0; // geometry->SetTimeBounds( timebounds ); // // geometry = timegeometry; // } // } // } // // // Use geometry for initialization // return this->InitializeView( renderWindow, // geometry.GetPointer(), initializeGlobalTimeSNC ); //} + bool RenderingManager::InitializeView( vtkRenderWindow * renderWindow, const Geometry3D * geometry, bool initializeGlobalTimeSNC ) +{ + ProportionalTimeGeometry::Pointer propTimeGeometry = ProportionalTimeGeometry::New(); + propTimeGeometry->Initialize(dynamic_cast(geometry->Clone().GetPointer()), 1); + return InitializeView(renderWindow, propTimeGeometry, initializeGlobalTimeSNC ); +} + +bool RenderingManager::InitializeView( vtkRenderWindow * renderWindow, const TimeGeometry * geometry, bool initializeGlobalTimeSNC ) { bool boundingBoxInitialized = false; int warningLevel = vtkObject::GetGlobalWarningDisplay(); vtkObject::GlobalWarningDisplayOff(); if ( (geometry != NULL ) && (const_cast< mitk::BoundingBox * >( - geometry->GetBoundingBox())->GetDiagonalLength2() > mitk::eps) ) + geometry->GetBoundingBoxInWorld())->GetDiagonalLength2() > mitk::eps) ) { boundingBoxInitialized = true; } mitk::BaseRenderer *baseRenderer = mitk::BaseRenderer::GetInstance( renderWindow ); int id = baseRenderer->GetMapperID(); this->InternalViewInitialization( baseRenderer, geometry, boundingBoxInitialized, id ); if ( boundingBoxInitialized && initializeGlobalTimeSNC ) { - m_TimeNavigationController->SetInputWorldGeometry( geometry ); + m_TimeNavigationController->SetInputWorldTimeGeometry( geometry ); } m_TimeNavigationController->Update(); this->RequestUpdate( renderWindow ); vtkObject::SetGlobalWarningDisplay( warningLevel ); return boundingBoxInitialized; } bool RenderingManager::InitializeView( vtkRenderWindow * renderWindow ) { mitk::BaseRenderer *baseRenderer = mitk::BaseRenderer::GetInstance( renderWindow ); mitk::SliceNavigationController *nc = baseRenderer->GetSliceNavigationController(); // Re-initialize view direction nc->SetViewDirectionToDefault(); // Update the SNC nc->Update(); this->RequestUpdate( renderWindow ); return true; } -void RenderingManager::InternalViewInitialization(mitk::BaseRenderer *baseRenderer, const mitk::Geometry3D *geometry, bool boundingBoxInitialized, int mapperID ) +void RenderingManager::InternalViewInitialization(mitk::BaseRenderer *baseRenderer, const mitk::TimeGeometry *geometry, bool boundingBoxInitialized, int mapperID ) { mitk::SliceNavigationController *nc = baseRenderer->GetSliceNavigationController(); // Re-initialize view direction nc->SetViewDirectionToDefault(); if ( boundingBoxInitialized ) { // Set geometry for NC - nc->SetInputWorldGeometry( geometry ); + nc->SetInputWorldTimeGeometry( geometry ); nc->Update(); if ( mapperID == 1 ) { // For 2D SNCs, steppers are set so that the cross is centered // in the image nc->GetSlice()->SetPos( nc->GetSlice()->GetSteps() / 2 ); } // Fit the render window DisplayGeometry baseRenderer->GetDisplayGeometry()->Fit(); baseRenderer->GetCameraController()->SetViewToAnterior(); } else { nc->Update(); } } const SliceNavigationController* RenderingManager::GetTimeNavigationController() const { return m_TimeNavigationController.GetPointer(); } SliceNavigationController* RenderingManager::GetTimeNavigationController() { return m_TimeNavigationController.GetPointer(); } void RenderingManager::ExecutePendingRequests() { m_UpdatePending = false; // Satisfy all pending update requests RenderWindowList::iterator it; int i = 0; for ( it = m_RenderWindowList.begin(); it != m_RenderWindowList.end(); ++it, ++i ) { if ( it->second == RENDERING_REQUESTED ) { this->ForceImmediateUpdate( it->first ); } } } void RenderingManager::RenderingStartCallback( vtkObject *caller, unsigned long , void *, void * ) { vtkRenderWindow *renderWindow = dynamic_cast< vtkRenderWindow * >( caller ); mitk::RenderingManager* renman = mitk::BaseRenderer::GetInstance(renderWindow)->GetRenderingManager(); RenderWindowList &renderWindowList = renman->m_RenderWindowList; if ( renderWindow ) { renderWindowList[renderWindow] = RENDERING_INPROGRESS; } renman->m_UpdatePending = false; } void RenderingManager ::RenderingProgressCallback( vtkObject *caller, unsigned long , void *, void * ) { vtkRenderWindow *renderWindow = dynamic_cast< vtkRenderWindow * >( caller ); mitk::RenderingManager* renman = mitk::BaseRenderer::GetInstance(renderWindow)->GetRenderingManager(); if ( renman->m_LODAbortMechanismEnabled ) { vtkRenderWindow *renderWindow = dynamic_cast< vtkRenderWindow * >( caller ); if ( renderWindow ) { BaseRenderer *renderer = BaseRenderer::GetInstance( renderWindow ); if ( renderer && (renderer->GetNumberOfVisibleLODEnabledMappers() > 0) ) { renman->DoMonitorRendering(); } } } } void RenderingManager ::RenderingEndCallback( vtkObject *caller, unsigned long , void *, void * ) { vtkRenderWindow *renderWindow = dynamic_cast< vtkRenderWindow * >( caller ); mitk::RenderingManager* renman = mitk::BaseRenderer::GetInstance(renderWindow)->GetRenderingManager(); RenderWindowList &renderWindowList = renman->m_RenderWindowList; RendererIntMap &nextLODMap = renman->m_NextLODMap; if ( renderWindow ) { BaseRenderer *renderer = BaseRenderer::GetInstance( renderWindow ); if ( renderer ) { renderWindowList[renderer->GetRenderWindow()] = RENDERING_INACTIVE; // Level-of-Detail handling if ( renderer->GetNumberOfVisibleLODEnabledMappers() > 0 ) { if(nextLODMap[renderer]==0) renman->StartOrResetTimer(); else nextLODMap[renderer] = 0; } } } } bool RenderingManager ::IsRendering() const { RenderWindowList::const_iterator it; for ( it = m_RenderWindowList.begin(); it != m_RenderWindowList.end(); ++it ) { if ( it->second == RENDERING_INPROGRESS ) { return true; } } return false; } void RenderingManager ::AbortRendering() { RenderWindowList::iterator it; for ( it = m_RenderWindowList.begin(); it != m_RenderWindowList.end(); ++it ) { if ( it->second == RENDERING_INPROGRESS ) { it->first->SetAbortRender( true ); m_RenderingAbortedMap[BaseRenderer::GetInstance(it->first)] = true; } } } int RenderingManager ::GetNextLOD( BaseRenderer *renderer ) { if ( renderer != NULL ) { return m_NextLODMap[renderer]; } else { return 0; } } void RenderingManager ::ExecutePendingHighResRenderingRequest() { RenderWindowList::iterator it; for ( it = m_RenderWindowList.begin(); it != m_RenderWindowList.end(); ++it ) { BaseRenderer *renderer = BaseRenderer::GetInstance( it->first ); if(renderer->GetNumberOfVisibleLODEnabledMappers()>0) { if(m_NextLODMap[renderer]==0) { m_NextLODMap[renderer]=1; RequestUpdate( it->first ); } } } } void RenderingManager ::SetMaximumLOD( unsigned int max ) { m_MaxLOD = max; } //enable/disable shading void RenderingManager ::SetShading(bool state, unsigned int lod) { if(lod>m_MaxLOD) { itkWarningMacro(<<"LOD out of range requested: " << lod << " maxLOD: " << m_MaxLOD); return; } m_ShadingEnabled[lod] = state; } bool RenderingManager ::GetShading(unsigned int lod) { if(lod>m_MaxLOD) { itkWarningMacro(<<"LOD out of range requested: " << lod << " maxLOD: " << m_MaxLOD); return false; } return m_ShadingEnabled[lod]; } //enable/disable the clipping plane void RenderingManager ::SetClippingPlaneStatus(bool status) { m_ClippingPlaneEnabled = status; } bool RenderingManager ::GetClippingPlaneStatus() { return m_ClippingPlaneEnabled; } void RenderingManager ::SetShadingValues(float ambient, float diffuse, float specular, float specpower) { m_ShadingValues[0] = ambient; m_ShadingValues[1] = diffuse; m_ShadingValues[2] = specular; m_ShadingValues[3] = specpower; } RenderingManager::FloatVector & RenderingManager ::GetShadingValues() { return m_ShadingValues; } void RenderingManager::SetDepthPeelingEnabled( bool enabled ) { RenderWindowList::iterator it; for ( it = m_RenderWindowList.begin(); it != m_RenderWindowList.end(); ++it ) { mitk::BaseRenderer *baseRenderer = mitk::BaseRenderer::GetInstance( it->first ); baseRenderer->SetDepthPeelingEnabled(enabled); } } void RenderingManager::SetMaxNumberOfPeels( int maxNumber ) { RenderWindowList::iterator it; for ( it = m_RenderWindowList.begin(); it != m_RenderWindowList.end(); ++it ) { mitk::BaseRenderer *baseRenderer = mitk::BaseRenderer::GetInstance( it->first ); baseRenderer->SetMaxNumberOfPeels(maxNumber); } } void RenderingManager::InitializePropertyList() { if (m_PropertyList.IsNull()) { m_PropertyList = PropertyList::New(); } this->SetProperty("coupled-zoom", BoolProperty::New(false)); this->SetProperty("coupled-plane-rotation", BoolProperty::New(false)); this->SetProperty("MIP-slice-rendering", BoolProperty::New(false)); } PropertyList::Pointer RenderingManager::GetPropertyList() const { return m_PropertyList; } BaseProperty* RenderingManager::GetProperty(const char *propertyKey) const { return m_PropertyList->GetProperty(propertyKey); } void RenderingManager::SetProperty(const char *propertyKey, BaseProperty* propertyValue) { m_PropertyList->SetProperty(propertyKey, propertyValue); } void RenderingManager::SetDataStorage( DataStorage* storage ) { if ( storage != NULL ) { m_DataStorage = storage; RenderingManager::RenderWindowVector::iterator iter; for ( iter = m_AllRenderWindows.begin(); iterSetDataStorage( m_DataStorage.GetPointer() ); } } } mitk::DataStorage* RenderingManager::GetDataStorage() { return m_DataStorage; } void RenderingManager::SetGlobalInteraction( mitk::GlobalInteraction* globalInteraction ) { if ( globalInteraction != NULL ) { m_GlobalInteraction = globalInteraction; } } mitk::GlobalInteraction* RenderingManager::GetGlobalInteraction() { return m_GlobalInteraction; } // Create and register generic RenderingManagerFactory. TestingRenderingManagerFactory renderingManagerFactory; } // namespace diff --git a/Core/Code/Controllers/mitkRenderingManager.h b/Core/Code/Controllers/mitkRenderingManager.h index 4a85387415..0103dbd372 100644 --- a/Core/Code/Controllers/mitkRenderingManager.h +++ b/Core/Code/Controllers/mitkRenderingManager.h @@ -1,417 +1,418 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #ifndef MITKRENDERINGMANAGER_H_HEADER_INCLUDED_C135A197 #define MITKRENDERINGMANAGER_H_HEADER_INCLUDED_C135A197 #include #include #include #include #include #include "mitkPropertyList.h" #include "mitkProperties.h" #include "mitkTimeGeometry.h" class vtkRenderWindow; class vtkObject; namespace mitk { class RenderingManager; class RenderingManagerFactory; class Geometry3D; class SliceNavigationController; class BaseRenderer; class DataStorage; class GlobalInteraction; /** * \brief Manager for coordinating the rendering process. * * RenderingManager is a central instance retrieving and executing * RenderWindow update requests. Its main purpose is to coordinate * distributed requests which cannot be aware of each other - lacking the * knowledge of whether they are really necessary or not. For example, two * objects might determine that a specific RenderWindow needs to be updated. * This would result in one unnecessary update, if both executed the update * on their own. * * The RenderingManager addresses this by letting each such object * request an update, and waiting for other objects to possibly * issue the same request. The actual update will then only be executed at a * well-defined point in the main event loop (this may be each time after * event processing is done). * * Convinience methods for updating all RenderWindows which have been * registered with the RenderingManager exist. If theses methods are not * used, it is not required to register (add) RenderWindows prior to using * the RenderingManager. * * The methods #ForceImmediateUpdate() and #ForceImmediateUpdateAll() can * be used to force the RenderWindow update execution without any delay, * bypassing the request functionality. * * The interface of RenderingManager is platform independent. Platform * specific subclasses have to be implemented, though, to supply an * appropriate event issueing for controlling the update execution process. * See method documentation for a description of how this can be done. * * \sa TestingRenderingManager An "empty" RenderingManager implementation which * can be used in tests etc. * */ class MITK_CORE_EXPORT RenderingManager : public itk::Object { public: mitkClassMacro(RenderingManager,itk::Object); typedef std::vector< vtkRenderWindow* > RenderWindowVector; typedef std::vector< float > FloatVector; typedef std::vector< bool > BoolVector; typedef itk::SmartPointer< DataStorage > DataStoragePointer; typedef itk::SmartPointer< GlobalInteraction > GlobalInteractionPointer; enum RequestType { REQUEST_UPDATE_ALL = 0, REQUEST_UPDATE_2DWINDOWS, REQUEST_UPDATE_3DWINDOWS }; static Pointer New(); /** Set the object factory which produces the desired platform specific * RenderingManager singleton instance. */ static void SetFactory( RenderingManagerFactory *factory ); /** Get the object factory which produces the platform specific * RenderingManager instances. */ static const RenderingManagerFactory *GetFactory(); /** Returns true if a factory has already been set. */ static bool HasFactory(); /** Get the RenderingManager singleton instance. */ static RenderingManager *GetInstance(); /** Returns true if the singleton instance does already exist. */ static bool IsInstantiated(); /** Adds a RenderWindow. This is required if the methods #RequestUpdateAll * or #ForceImmediateUpdate are to be used. */ void AddRenderWindow( vtkRenderWindow *renderWindow ); /** Removes a RenderWindow. */ void RemoveRenderWindow( vtkRenderWindow *renderWindow ); /** Get a list of all registered RenderWindows */ const RenderWindowVector &GetAllRegisteredRenderWindows(); /** Requests an update for the specified RenderWindow, to be executed as * soon as the main loop is ready for rendering. */ void RequestUpdate( vtkRenderWindow *renderWindow ); /** Immediately executes an update of the specified RenderWindow. */ void ForceImmediateUpdate( vtkRenderWindow *renderWindow ); /** Requests all currently registered RenderWindows to be updated. * If only 2D or 3D windows should be updated, this can be specified * via the parameter requestType. */ void RequestUpdateAll( RequestType type = REQUEST_UPDATE_ALL ); /** Immediately executes an update of all registered RenderWindows. * If only 2D or 3D windows should be updated, this can be specified * via the parameter requestType. */ void ForceImmediateUpdateAll( RequestType type = REQUEST_UPDATE_ALL ); /** Initializes the windows specified by requestType to the geometry of the * given DataStorage. */ //virtual bool InitializeViews( const DataStorage *storage, const DataNode* node = NULL, // RequestType type = REQUEST_UPDATE_ALL, bool preserveRoughOrientationInWorldSpace = false ); /** Initializes the windows specified by requestType to the given * geometry. PLATFORM SPECIFIC. TODO: HOW IS THIS PLATFORM SPECIFIC? */ virtual bool InitializeViews( const Geometry3D *geometry, RequestType type = REQUEST_UPDATE_ALL, bool preserveRoughOrientationInWorldSpace = false ); virtual bool InitializeViews( const TimeGeometry *geometry, RequestType type = REQUEST_UPDATE_ALL, bool preserveRoughOrientationInWorldSpace = false ); /** Initializes the windows to the default viewing direction * (geomtry information is NOT changed). PLATFORM SPECIFIC. */ virtual bool InitializeViews( RequestType type = REQUEST_UPDATE_ALL ); /** Initializes the specified window to the geometry of the given * DataNode. Set "initializeGlobalTimeSNC" to true in order to use this - * geometry as global TimeSlicedGeometry. PLATFORM SPECIFIC. */ + * geometry as global TimeGeometry. PLATFORM SPECIFIC. */ //virtual bool InitializeView( vtkRenderWindow *renderWindow, const DataStorage* ds, const DataNode* node = NULL, bool initializeGlobalTimeSNC = false ); /** Initializes the specified window to the given geometry. Set * "initializeGlobalTimeSNC" to true in order to use this geometry as - * global TimeSlicedGeometry. PLATFORM SPECIFIC. */ + * global TimeGeometry. PLATFORM SPECIFIC. */ virtual bool InitializeView( vtkRenderWindow *renderWindow, const Geometry3D *geometry, bool initializeGlobalTimeSNC = false); + virtual bool InitializeView( vtkRenderWindow *renderWindow, const TimeGeometry *geometry, bool initializeGlobalTimeSNC = false); /** Initializes the specified window to the default viewing direction * (geomtry information is NOT changed). PLATFORM SPECIFIC. */ virtual bool InitializeView( vtkRenderWindow *renderWindow ); /** Gets the (global) SliceNavigationController responsible for * time-slicing. */ const SliceNavigationController *GetTimeNavigationController() const; /** Gets the (global) SliceNavigationController responsible for * time-slicing. */ SliceNavigationController *GetTimeNavigationController(); virtual ~RenderingManager(); /** Executes all pending requests. This method has to be called by the * system whenever a RenderingManager induced request event occurs in * the system pipeline (see concrete RenderingManager implementations). */ virtual void ExecutePendingRequests(); bool IsRendering() const; void AbortRendering(); /** En-/Disable LOD increase globally. */ itkSetMacro( LODIncreaseBlocked, bool ); /** En-/Disable LOD increase globally. */ itkGetMacro( LODIncreaseBlocked, bool ); /** En-/Disable LOD increase globally. */ itkBooleanMacro( LODIncreaseBlocked ); /** En-/Disable LOD abort mechanism. */ itkSetMacro( LODAbortMechanismEnabled, bool ); /** En-/Disable LOD abort mechanism. */ itkGetMacro( LODAbortMechanismEnabled, bool ); /** En-/Disable LOD abort mechanism. */ itkBooleanMacro( LODAbortMechanismEnabled ); /** En-/Disable depth peeling for all renderers */ void SetDepthPeelingEnabled(bool enabled); /** Set maximum number of peels for all renderers */ void SetMaxNumberOfPeels(int maxNumber); /** Force a sub-class to start a timer for a pending hires-rendering request */ virtual void StartOrResetTimer() {}; /** To be called by a sub-class from a timer callback */ void ExecutePendingHighResRenderingRequest(); virtual void DoStartRendering() {}; virtual void DoMonitorRendering() {}; virtual void DoFinishAbortRendering() {}; int GetNextLOD( BaseRenderer* renderer ); /** Set current LOD (NULL means all renderers)*/ void SetMaximumLOD( unsigned int max ); void SetShading( bool state, unsigned int lod ); bool GetShading( unsigned int lod ); void SetClippingPlaneStatus( bool status ); bool GetClippingPlaneStatus(); void SetShadingValues( float ambient, float diffuse, float specular, float specpower ); FloatVector &GetShadingValues(); /** Returns a property list */ PropertyList::Pointer GetPropertyList() const; /** Returns a property from m_PropertyList */ BaseProperty* GetProperty(const char *propertyKey) const; /** Sets or adds (if not present) a property in m_PropertyList */ void SetProperty(const char *propertyKey, BaseProperty* propertyValue); /** * \brief Setter / Getter for internal DataStorage * * Sets / returns the mitk::DataStorage that is used internally. This instance holds all mitk::DataNodes that are * rendered by the registered BaseRenderers. * * If this DataStorage is changed at runtime by calling SetDataStorage(), * all currently registered BaseRenderers are automatically given the correct instance. * When a new BaseRenderer is added, it is automatically initialized with the currently active DataStorage. */ void SetDataStorage( mitk::DataStorage* storage ); /** * \brief Setter / Getter for internal DataStorage * * Sets / returns the mitk::DataStorage that is used internally. This instance holds all mitk::DataNodes that are * rendered by the registered BaseRenderers. * * If this DataStorage is changed at runtime by calling SetDataStorage(), * all currently registered BaseRenderers are automatically given the correct instance. * When a new BaseRenderer is added, it is automatically initialized with the currently active DataStorage. */ mitk::DataStorage* GetDataStorage(); /** * \brief Setter / Getter for internal GloabInteraction * * Sets / returns the instance of mitk::GlobalInteraction that is internally held. * It'S not actually used by this class but offers it to all registered BaseRenderers. * These need it for their own internal initialization of the FocusManager and the corresponding EventMappers. */ void SetGlobalInteraction( mitk::GlobalInteraction* globalInteraction ); /** * \brief Setter / Getter for internal GloabInteraction * * Sets / returns the instance of mitk::GlobalInteraction that is internally held. * It'S not actually used by this class but offers it to all registered BaseRenderers. * These need it for their own internal initialization of the FocusManager and the corresponding EventMappers. */ mitk::GlobalInteraction* GetGlobalInteraction(); itkSetMacro(ConstrainedPaddingZooming, bool); protected: enum { RENDERING_INACTIVE = 0, RENDERING_REQUESTED, RENDERING_INPROGRESS }; RenderingManager(); /** Abstract method for generating a system specific event for rendering * request. This method is called whenever an update is requested */ virtual void GenerateRenderingRequestEvent() = 0; virtual void InitializePropertyList(); bool m_UpdatePending; typedef std::map< BaseRenderer *, unsigned int > RendererIntMap; typedef std::map< BaseRenderer *, bool > RendererBoolMap; RendererBoolMap m_RenderingAbortedMap; RendererIntMap m_NextLODMap; unsigned int m_MaxLOD; bool m_LODIncreaseBlocked; bool m_LODAbortMechanismEnabled; BoolVector m_ShadingEnabled; bool m_ClippingPlaneEnabled; FloatVector m_ShadingValues; static void RenderingStartCallback( vtkObject *caller, unsigned long eid, void *clientdata, void *calldata ); static void RenderingProgressCallback( vtkObject *caller, unsigned long eid, void *clientdata, void *calldata ); static void RenderingEndCallback( vtkObject *caller, unsigned long eid, void *clientdata, void *calldata ); typedef std::map< vtkRenderWindow *, int > RenderWindowList; RenderWindowList m_RenderWindowList; RenderWindowVector m_AllRenderWindows; struct RenderWindowCallbacks { vtkCallbackCommand* commands[3u]; }; typedef std::map RenderWindowCallbacksList; RenderWindowCallbacksList m_RenderWindowCallbacksList; itk::SmartPointer m_TimeNavigationController; static RenderingManager::Pointer s_Instance; static RenderingManagerFactory *s_RenderingManagerFactory; PropertyList::Pointer m_PropertyList; DataStoragePointer m_DataStorage; GlobalInteractionPointer m_GlobalInteraction; bool m_ConstrainedPaddingZooming; private: void InternalViewInitialization( - mitk::BaseRenderer *baseRenderer, const mitk::Geometry3D *geometry, + mitk::BaseRenderer *baseRenderer, const mitk::TimeGeometry *geometry, bool boundingBoxInitialized, int mapperID ); }; #pragma GCC visibility push(default) itkEventMacro( RenderingManagerEvent, itk::AnyEvent ); itkEventMacro( RenderingManagerViewsInitializedEvent, RenderingManagerEvent ); #pragma GCC visibility pop /** * Generic RenderingManager implementation for "non-rendering-plattform", * e.g. for tests. Its factory (TestingRenderingManagerFactory) is * automatically on start-up and is used by default if not other * RenderingManagerFactory is instantiated explicitly thereafter. * (see mitkRenderingManager.cpp) */ class MITK_CORE_EXPORT TestingRenderingManager : public RenderingManager { public: mitkClassMacro(TestingRenderingManager,RenderingManager); itkNewMacro(Self); protected: virtual void GenerateRenderingRequestEvent() { // ForceImmediateUpdateAll(); }; }; } // namespace mitk #endif /* MITKRenderingManager_H_HEADER_INCLUDED_C135A197 */ diff --git a/Core/Code/Controllers/mitkSliceNavigationController.cpp b/Core/Code/Controllers/mitkSliceNavigationController.cpp index 2d6219fc19..aa35c2545c 100644 --- a/Core/Code/Controllers/mitkSliceNavigationController.cpp +++ b/Core/Code/Controllers/mitkSliceNavigationController.cpp @@ -1,737 +1,754 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkSliceNavigationController.h" #include "mitkBaseRenderer.h" #include "mitkSlicedGeometry3D.h" #include "mitkPlaneGeometry.h" #include "mitkOperation.h" #include "mitkOperationActor.h" #include "mitkStateEvent.h" #include "mitkCrosshairPositionEvent.h" #include "mitkPositionEvent.h" +#include "mitkProportionalTimeGeometry.h" #include "mitkInteractionConst.h" #include "mitkAction.h" #include "mitkGlobalInteraction.h" #include "mitkEventMapper.h" #include "mitkFocusManager.h" #include "mitkVtkPropRenderer.h" #include "mitkRenderingManager.h" #include "mitkInteractionConst.h" #include "mitkPointOperation.h" #include "mitkPlaneOperation.h" #include "mitkUndoController.h" #include "mitkOperationEvent.h" #include "mitkNodePredicateDataType.h" #include "mitkStatusBar.h" #include "mitkMemoryUtilities.h" #include namespace mitk { SliceNavigationController::SliceNavigationController( const char *type ) : BaseController( type ), - m_InputWorldGeometry( NULL ), + m_InputWorldGeometry3D( NULL ), + m_InputWorldTimeGeometry( NULL ), m_CreatedWorldGeometry( NULL ), m_ViewDirection( Axial ), m_DefaultViewDirection( Axial ), m_RenderingManager( NULL ), m_Renderer( NULL ), m_Top( false ), m_FrontSide( false ), m_Rotated( false ), m_BlockUpdate( false ), m_SliceLocked( false ), m_SliceRotationLocked( false ), m_OldPos(0) { typedef itk::SimpleMemberCommand< SliceNavigationController > SNCCommandType; SNCCommandType::Pointer sliceStepperChangedCommand, timeStepperChangedCommand; sliceStepperChangedCommand = SNCCommandType::New(); timeStepperChangedCommand = SNCCommandType::New(); sliceStepperChangedCommand->SetCallbackFunction( this, &SliceNavigationController::SendSlice ); timeStepperChangedCommand->SetCallbackFunction( this, &SliceNavigationController::SendTime ); m_Slice->AddObserver( itk::ModifiedEvent(), sliceStepperChangedCommand ); m_Time->AddObserver( itk::ModifiedEvent(), timeStepperChangedCommand ); m_Slice->SetUnitName( "mm" ); m_Time->SetUnitName( "ms" ); m_Top = false; m_FrontSide = false; m_Rotated = false; } SliceNavigationController::~SliceNavigationController() { } void -SliceNavigationController::SetInputWorldGeometry( const Geometry3D *geometry ) +SliceNavigationController::SetInputWorldGeometry3D( const Geometry3D *geometry ) { if ( geometry != NULL ) { if ( const_cast< BoundingBox * >( geometry->GetBoundingBox()) ->GetDiagonalLength2() < eps ) { itkWarningMacro( "setting an empty bounding-box" ); geometry = NULL; } } - if ( m_InputWorldGeometry != geometry ) + if ( m_InputWorldGeometry3D != geometry ) { - m_InputWorldGeometry = geometry; + m_InputWorldGeometry3D = geometry; + m_InputWorldTimeGeometry = NULL; + this->Modified(); + } +} + +void +SliceNavigationController::SetInputWorldTimeGeometry( const TimeGeometry *geometry ) +{ + if ( geometry != NULL ) + { + if ( const_cast< BoundingBox * >( geometry->GetBoundingBoxInWorld()) + ->GetDiagonalLength2() < eps ) + { + itkWarningMacro( "setting an empty bounding-box" ); + geometry = NULL; + } + } + if ( m_InputWorldTimeGeometry != geometry ) + { + m_InputWorldTimeGeometry = geometry; + m_InputWorldGeometry3D = NULL; this->Modified(); } } RenderingManager * SliceNavigationController::GetRenderingManager() const { mitk::RenderingManager* renderingManager = m_RenderingManager.GetPointer(); if (renderingManager != NULL) return renderingManager; if ( m_Renderer != NULL ) { renderingManager = m_Renderer->GetRenderingManager(); if (renderingManager != NULL) return renderingManager; } return mitk::RenderingManager::GetInstance(); } void SliceNavigationController::SetViewDirectionToDefault() { m_ViewDirection = m_DefaultViewDirection; } void SliceNavigationController::Update() { if ( !m_BlockUpdate ) { if ( m_ViewDirection == Axial ) { this->Update( Axial, false, false, true ); } else { this->Update( m_ViewDirection ); } } } - void SliceNavigationController::Update( SliceNavigationController::ViewDirection viewDirection, bool top, bool frontside, bool rotated ) { - const TimeSlicedGeometry* worldTimeSlicedGeometry = - dynamic_cast< const TimeSlicedGeometry * >( - m_InputWorldGeometry.GetPointer() ); + const TimeGeometry* worldTimeGeometry = m_InputWorldTimeGeometry.GetPointer(); if( m_BlockUpdate || - m_InputWorldGeometry.IsNull() || - ( (worldTimeSlicedGeometry != NULL) && (worldTimeSlicedGeometry->GetTimeSteps() == 0) ) + ( m_InputWorldTimeGeometry.IsNull() && m_InputWorldGeometry3D.IsNull() ) || + ( (worldTimeGeometry != NULL) && (worldTimeGeometry->GetNumberOfTimeSteps() == 0) ) ) { return; } m_BlockUpdate = true; - if ( m_LastUpdateTime < m_InputWorldGeometry->GetMTime() ) + if ( m_LastUpdateTime < m_InputWorldTimeGeometry->GetMTime() ) { Modified(); } this->SetViewDirection( viewDirection ); this->SetTop( top ); this->SetFrontSide( frontside ); this->SetRotated( rotated ); if ( m_LastUpdateTime < GetMTime() ) { m_LastUpdateTime = GetMTime(); // initialize the viewplane SlicedGeometry3D::Pointer slicedWorldGeometry = NULL; m_CreatedWorldGeometry = NULL; switch ( viewDirection ) { case Original: - if ( worldTimeSlicedGeometry != NULL ) + if ( worldTimeGeometry != NULL ) { - m_CreatedWorldGeometry = static_cast< TimeSlicedGeometry * >( - m_InputWorldGeometry->Clone().GetPointer() ); + m_CreatedWorldGeometry = worldTimeGeometry->Clone().GetPointer(); - worldTimeSlicedGeometry = m_CreatedWorldGeometry.GetPointer(); + worldTimeGeometry = m_CreatedWorldGeometry.GetPointer(); slicedWorldGeometry = dynamic_cast< SlicedGeometry3D * >( - m_CreatedWorldGeometry->GetGeometry3D( this->GetTime()->GetPos() ) ); + m_CreatedWorldGeometry->GetGeometryForTimeStep( this->GetTime()->GetPos() ) ); if ( slicedWorldGeometry.IsNotNull() ) { break; } } else { const SlicedGeometry3D *worldSlicedGeometry = dynamic_cast< const SlicedGeometry3D * >( - m_InputWorldGeometry.GetPointer()); + m_InputWorldGeometry3D.GetPointer()); if ( worldSlicedGeometry != NULL ) { slicedWorldGeometry = static_cast< SlicedGeometry3D * >( - m_InputWorldGeometry->Clone().GetPointer()); + m_InputWorldGeometry3D->Clone().GetPointer()); break; } } //else: use Axial: no "break" here!! case Axial: slicedWorldGeometry = SlicedGeometry3D::New(); slicedWorldGeometry->InitializePlanes( - m_InputWorldGeometry, PlaneGeometry::Axial, + m_InputWorldGeometry3D, PlaneGeometry::Axial, top, frontside, rotated ); slicedWorldGeometry->SetSliceNavigationController( this ); break; case Frontal: slicedWorldGeometry = SlicedGeometry3D::New(); - slicedWorldGeometry->InitializePlanes( m_InputWorldGeometry, + slicedWorldGeometry->InitializePlanes( m_InputWorldGeometry3D, PlaneGeometry::Frontal, top, frontside, rotated ); slicedWorldGeometry->SetSliceNavigationController( this ); break; case Sagittal: slicedWorldGeometry = SlicedGeometry3D::New(); - slicedWorldGeometry->InitializePlanes( m_InputWorldGeometry, + slicedWorldGeometry->InitializePlanes( m_InputWorldGeometry3D, PlaneGeometry::Sagittal, top, frontside, rotated ); slicedWorldGeometry->SetSliceNavigationController( this ); break; default: itkExceptionMacro("unknown ViewDirection"); } m_Slice->SetPos( 0 ); m_Slice->SetSteps( (int)slicedWorldGeometry->GetSlices() ); if ( m_CreatedWorldGeometry.IsNull() ) { - // initialize TimeSlicedGeometry - m_CreatedWorldGeometry = TimeSlicedGeometry::New(); + // initialize TimeGeometry + m_CreatedWorldGeometry = ProportionalTimeGeometry::New(); } - if ( worldTimeSlicedGeometry == NULL ) + if ( worldTimeGeometry == NULL ) { - m_CreatedWorldGeometry->InitializeEvenlyTimed( slicedWorldGeometry, 1 ); + m_CreatedWorldGeometry = ProportionalTimeGeometry::New(); + dynamic_cast(m_CreatedWorldGeometry.GetPointer())->Initialize(slicedWorldGeometry, 1); m_Time->SetSteps( 0 ); m_Time->SetPos( 0 ); m_Time->InvalidateRange(); } else { m_BlockUpdate = true; - m_Time->SetSteps( worldTimeSlicedGeometry->GetTimeSteps() ); + m_Time->SetSteps( worldTimeGeometry->GetNumberOfTimeSteps() ); m_Time->SetPos( 0 ); - const TimeBounds &timeBounds = worldTimeSlicedGeometry->GetTimeBounds(); + const TimeBounds &timeBounds = worldTimeGeometry->GetTimeBounds(); m_Time->SetRange( timeBounds[0], timeBounds[1] ); m_BlockUpdate = false; - assert( worldTimeSlicedGeometry->GetGeometry3D( this->GetTime()->GetPos() ) != NULL ); + assert( worldTimeGeometry->GetGeometryForTimeStep( this->GetTime()->GetPos() ) != NULL ); slicedWorldGeometry->SetTimeBounds( - worldTimeSlicedGeometry->GetGeometry3D( this->GetTime()->GetPos() )->GetTimeBounds() ); + worldTimeGeometry->GetGeometryForTimeStep( this->GetTime()->GetPos() )->GetTimeBounds() ); //@todo implement for non-evenly-timed geometry! - m_CreatedWorldGeometry->InitializeEvenlyTimed( - slicedWorldGeometry, worldTimeSlicedGeometry->GetTimeSteps() ); + m_CreatedWorldGeometry = ProportionalTimeGeometry::New(); + dynamic_cast(m_CreatedWorldGeometry.GetPointer())->Initialize(slicedWorldGeometry, worldTimeGeometry->GetNumberOfTimeSteps()); } } // unblock update; we may do this now, because if m_BlockUpdate was already // true before this method was entered, then we will never come here. m_BlockUpdate = false; // Send the geometry. Do this even if nothing was changed, because maybe // Update() was only called to re-send the old geometry and time/slice data. this->SendCreatedWorldGeometry(); this->SendSlice(); this->SendTime(); // Adjust the stepper range of slice stepper according to geometry this->AdjustSliceStepperRange(); } void SliceNavigationController::SendCreatedWorldGeometry() { // Send the geometry. Do this even if nothing was changed, because maybe // Update() was only called to re-send the old geometry. if ( !m_BlockUpdate ) { this->InvokeEvent( GeometrySendEvent(m_CreatedWorldGeometry, 0) ); } } void SliceNavigationController::SendCreatedWorldGeometryUpdate() { if ( !m_BlockUpdate ) { this->InvokeEvent( GeometryUpdateEvent(m_CreatedWorldGeometry, m_Slice->GetPos()) ); } } void SliceNavigationController::SendSlice() { if ( !m_BlockUpdate ) { if ( m_CreatedWorldGeometry.IsNotNull() ) { this->InvokeEvent( GeometrySliceEvent(m_CreatedWorldGeometry, m_Slice->GetPos()) ); // send crosshair event crosshairPositionEvent.Send(); // Request rendering update for all views this->GetRenderingManager()->RequestUpdateAll(); } } } void SliceNavigationController::SendTime() { if ( !m_BlockUpdate ) { if ( m_CreatedWorldGeometry.IsNotNull() ) { this->InvokeEvent( GeometryTimeEvent(m_CreatedWorldGeometry, m_Time->GetPos()) ); // Request rendering update for all views this->GetRenderingManager()->RequestUpdateAll(); } } } void SliceNavigationController::SetGeometry( const itk::EventObject & ) { } void SliceNavigationController ::SetGeometryTime( const itk::EventObject &geometryTimeEvent ) { const SliceNavigationController::GeometryTimeEvent *timeEvent = dynamic_cast< const SliceNavigationController::GeometryTimeEvent * >( &geometryTimeEvent); assert( timeEvent != NULL ); - TimeSlicedGeometry *timeSlicedGeometry = timeEvent->GetTimeSlicedGeometry(); - assert( timeSlicedGeometry != NULL ); + TimeGeometry *timeGeometry = timeEvent->GetTimeGeometry(); + assert( timeGeometry != NULL ); if ( m_CreatedWorldGeometry.IsNotNull() ) { int timeStep = (int) timeEvent->GetPos(); ScalarType timeInMS; - timeInMS = timeSlicedGeometry->TimeStepToMS( timeStep ); - timeStep = m_CreatedWorldGeometry->MSToTimeStep( timeInMS ); + timeInMS = timeGeometry->TimeStepToTimePoint( timeStep ); + timeStep = m_CreatedWorldGeometry->TimePointToTimeStep( timeInMS ); this->GetTime()->SetPos( timeStep ); } } void SliceNavigationController ::SetGeometrySlice(const itk::EventObject & geometrySliceEvent) { const SliceNavigationController::GeometrySliceEvent* sliceEvent = dynamic_cast( &geometrySliceEvent); assert(sliceEvent!=NULL); this->GetSlice()->SetPos(sliceEvent->GetPos()); } void SliceNavigationController::SelectSliceByPoint( const Point3D &point ) { //@todo add time to PositionEvent and use here!! SlicedGeometry3D* slicedWorldGeometry = dynamic_cast< SlicedGeometry3D * >( - m_CreatedWorldGeometry->GetGeometry3D( this->GetTime()->GetPos() ) ); + m_CreatedWorldGeometry->GetGeometryForTimeStep( this->GetTime()->GetPos() ) ); if ( slicedWorldGeometry ) { int bestSlice = -1; double bestDistance = itk::NumericTraits::max(); int s, slices; slices = slicedWorldGeometry->GetSlices(); if ( slicedWorldGeometry->GetEvenlySpaced() ) { mitk::Geometry2D *plane = slicedWorldGeometry->GetGeometry2D( 0 ); const Vector3D &direction = slicedWorldGeometry->GetDirectionVector(); Point3D projectedPoint; plane->Project( point, projectedPoint ); // Check whether the point is somewhere within the slice stack volume; // otherwise, the defualt slice (0) will be selected if ( direction[0] * (point[0] - projectedPoint[0]) + direction[1] * (point[1] - projectedPoint[1]) + direction[2] * (point[2] - projectedPoint[2]) >= 0 ) { bestSlice = (int)(plane->Distance( point ) / slicedWorldGeometry->GetSpacing()[2] + 0.5); } } else { Point3D projectedPoint; for ( s = 0; s < slices; ++s ) { slicedWorldGeometry->GetGeometry2D( s )->Project( point, projectedPoint ); Vector3D distance = projectedPoint - point; ScalarType currentDistance = distance.GetSquaredNorm(); if ( currentDistance < bestDistance ) { bestDistance = currentDistance; bestSlice = s; } } } if ( bestSlice >= 0 ) { this->GetSlice()->SetPos( bestSlice ); } else { this->GetSlice()->SetPos( 0 ); } this->SendCreatedWorldGeometryUpdate(); } } void SliceNavigationController::ReorientSlices( const Point3D &point, const Vector3D &normal ) { PlaneOperation op( OpORIENT, point, normal ); m_CreatedWorldGeometry->ExecuteOperation( &op ); this->SendCreatedWorldGeometryUpdate(); } void SliceNavigationController::ReorientSlices(const mitk::Point3D &point, const mitk::Vector3D &axisVec0, const mitk::Vector3D &axisVec1 ) { PlaneOperation op( OpORIENT, point, axisVec0, axisVec1 ); m_CreatedWorldGeometry->ExecuteOperation( &op ); this->SendCreatedWorldGeometryUpdate(); } - - -const mitk::TimeSlicedGeometry * +mitk::TimeGeometry * SliceNavigationController::GetCreatedWorldGeometry() { return m_CreatedWorldGeometry; } - const mitk::Geometry3D * SliceNavigationController::GetCurrentGeometry3D() { if ( m_CreatedWorldGeometry.IsNotNull() ) { - return m_CreatedWorldGeometry->GetGeometry3D( this->GetTime()->GetPos() ); + return m_CreatedWorldGeometry->GetGeometryForTimeStep( this->GetTime()->GetPos() ); } else { return NULL; } } const mitk::PlaneGeometry * SliceNavigationController::GetCurrentPlaneGeometry() { const mitk::SlicedGeometry3D *slicedGeometry = dynamic_cast< const mitk::SlicedGeometry3D * > ( this->GetCurrentGeometry3D() ); if ( slicedGeometry ) { const mitk::PlaneGeometry *planeGeometry = dynamic_cast< mitk::PlaneGeometry * > ( slicedGeometry->GetGeometry2D(this->GetSlice()->GetPos()) ); return planeGeometry; } else { return NULL; } } void SliceNavigationController::SetRenderer( BaseRenderer *renderer ) { m_Renderer = renderer; } BaseRenderer * SliceNavigationController::GetRenderer() const { return m_Renderer; } void SliceNavigationController::AdjustSliceStepperRange() { const mitk::SlicedGeometry3D *slicedGeometry = dynamic_cast< const mitk::SlicedGeometry3D * > ( this->GetCurrentGeometry3D() ); const Vector3D &direction = slicedGeometry->GetDirectionVector(); int c = 0; int i, k = 0; for ( i = 0; i < 3; ++i ) { if ( fabs( (float) direction[i] ) < 0.000000001 ) { ++c; } else { k = i; } } if ( c == 2 ) { - ScalarType min = m_InputWorldGeometry->GetOrigin()[k]; - ScalarType max = min + m_InputWorldGeometry->GetExtentInMM( k ); + ScalarType min = slicedGeometry->GetOrigin()[k]; + ScalarType max = min + slicedGeometry->GetExtentInMM( k ); m_Slice->SetRange( min, max ); } else { m_Slice->InvalidateRange(); } } void SliceNavigationController::ExecuteOperation( Operation *operation ) { // switch on type // - select best slice for a given point // - rotate created world geometry according to Operation->SomeInfo() if ( !operation ) { return; } switch ( operation->GetOperationType() ) { case OpMOVE: // should be a point operation { if ( !m_SliceLocked ) //do not move the cross position { // select a slice PointOperation *po = dynamic_cast< PointOperation * >( operation ); if ( po && po->GetIndex() == -1 ) { this->SelectSliceByPoint( po->GetPoint() ); } else if ( po && po->GetIndex() != -1 ) // undo case because index != -1, index holds the old position of this slice { this->GetSlice()->SetPos( po->GetIndex() ); } } break; } case OpRESTOREPLANEPOSITION: { m_CreatedWorldGeometry->ExecuteOperation( operation ); this->SendCreatedWorldGeometryUpdate(); break; } default: { // do nothing break; } } } // Relict from the old times, when automous decisions were accepted // behavior. Remains in here, because some RenderWindows do exist outside // of StdMultiWidgets. bool SliceNavigationController ::ExecuteAction( Action* action, StateEvent const* stateEvent ) { bool ok = false; const PositionEvent* posEvent = dynamic_cast< const PositionEvent * >( stateEvent->GetEvent() ); if ( posEvent != NULL ) { if ( m_CreatedWorldGeometry.IsNull() ) { return true; } switch (action->GetActionId()) { case AcMOVE: { BaseRenderer *baseRenderer = posEvent->GetSender(); if ( !baseRenderer ) { baseRenderer = const_cast( GlobalInteraction::GetInstance()->GetFocus() ); } if ( baseRenderer ) if ( baseRenderer->GetMapperID() == 1 ) { PointOperation doOp(OpMOVE, posEvent->GetWorldPosition()); this->ExecuteOperation( &doOp ); // If click was performed in this render window than we have to update the status bar information about position and pixel value. if(baseRenderer == m_Renderer) { { std::string statusText; TNodePredicateDataType::Pointer isImageData = TNodePredicateDataType::New(); mitk::DataStorage::SetOfObjects::ConstPointer nodes = baseRenderer->GetDataStorage()->GetSubset(isImageData).GetPointer(); mitk::Point3D worldposition = posEvent->GetWorldPosition(); int maxlayer = -32768; mitk::Image::Pointer image3D; // find image with largest layer, that is the image shown on top in the render window for (unsigned int x = 0; x < nodes->size(); x++) { //Just consider image data that is no helper object. E.g. do not consider nodes created for the slice interpolation bool isHelper (false); nodes->at(x)->GetBoolProperty("helper object", isHelper); if(nodes->at(x)->GetData()->GetGeometry()->IsInside(worldposition) && isHelper == false) { int layer = 0; if(!(nodes->at(x)->GetIntProperty("layer", layer))) continue; if(layer > maxlayer) { if(static_cast(nodes->at(x))->IsVisible(m_Renderer)) { image3D = dynamic_cast(nodes->at(x)->GetData()); maxlayer = layer; } } } } std::stringstream stream; stream.imbue(std::locale::classic()); // get the position and gray value from the image and build up status bar text if(image3D.IsNotNull()) { Index3D p; image3D->GetGeometry()->WorldToIndex(worldposition, p); stream.precision(2); stream<<"Position: <" << std::fixed < mm"; stream<<"; Index: <"< "; mitk::ScalarType pixelValue = image3D->GetPixelValueByIndex(p, baseRenderer->GetTimeStep()); if (fabs(pixelValue)>1000000 || fabs(pixelValue) < 0.01) { stream<<"; Time: " << baseRenderer->GetTime() << " ms; Pixelvalue: " << std::scientific<< pixelValue <<" "; } else { stream<<"; Time: " << baseRenderer->GetTime() << " ms; Pixelvalue: "<< pixelValue <<" "; } } else { stream << "No image information at this position!"; } statusText = stream.str(); mitk::StatusBar::GetInstance()->DisplayGreyValueText(statusText.c_str()); } } ok = true; break; } } default: ok = true; break; } return ok; } const DisplayPositionEvent *displPosEvent = dynamic_cast< const DisplayPositionEvent * >( stateEvent->GetEvent() ); if ( displPosEvent != NULL ) { return true; } return false; } } // namespace diff --git a/Core/Code/Controllers/mitkSliceNavigationController.h b/Core/Code/Controllers/mitkSliceNavigationController.h index 213cb4119e..cd193cd901 100644 --- a/Core/Code/Controllers/mitkSliceNavigationController.h +++ b/Core/Code/Controllers/mitkSliceNavigationController.h @@ -1,555 +1,560 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #ifndef SLICENAVIGATIONCONTROLLER_H_HEADER_INCLUDED_C1C55A2F #define SLICENAVIGATIONCONTROLLER_H_HEADER_INCLUDED_C1C55A2F #include #include "mitkBaseController.h" #include "mitkRenderingManager.h" -#include "mitkTimeSlicedGeometry.h" +#include "mitkTimeGeometry.h" #include "mitkMessage.h" #pragma GCC visibility push(default) #include #pragma GCC visibility pop #include #include #include "mitkRestorePlanePositionOperation.h" namespace mitk { -#define mitkTimeSlicedGeometryEventMacro( classname , super ) \ +#define mitkTimeGeometryEventMacro( classname , super ) \ class MITK_CORE_EXPORT classname : public super { \ public: \ typedef classname Self; \ typedef super Superclass; \ - classname(TimeSlicedGeometry* aTimeSlicedGeometry, unsigned int aPos) \ - : Superclass(aTimeSlicedGeometry, aPos) {} \ + classname(TimeGeometry* aTimeGeometry, unsigned int aPos) \ + : Superclass(aTimeGeometry, aPos) {} \ virtual ~classname() {} \ virtual const char * GetEventName() const { return #classname; } \ virtual bool CheckEvent(const ::itk::EventObject* e) const \ { return dynamic_cast(e); } \ virtual ::itk::EventObject* MakeObject() const \ - { return new Self(GetTimeSlicedGeometry(), GetPos()); } \ + { return new Self(GetTimeGeometry(), GetPos()); } \ private: \ void operator=(const Self&); \ } class PlaneGeometry; class Geometry3D; class BaseRenderer; /** * \brief Controls the selection of the slice the associated BaseRenderer * will display * - * A SliceNavigationController takes a Geometry3D as input world geometry - * (TODO what are the exact requirements?) and generates a TimeSlicedGeometry - * as output. The TimeSlicedGeometry holds a number of SlicedGeometry3Ds and + * A SliceNavigationController takes a Geometry3D or a TimeGeometry as input world geometry + * (TODO what are the exact requirements?) and generates a TimeGeometry + * as output. The TimeGeometry holds a number of SlicedGeometry3Ds and * these in turn hold a series of Geometry2Ds. One of these Geometry2Ds is * selected as world geometry for the BaseRenderers associated to 2D views. * * The SliceNavigationController holds has Steppers (one for the slice, a * second for the time step), which control the selection of a single - * Geometry2D from the TimeSlicedGeometry. SliceNavigationController generates + * Geometry2D from the TimeGeometry. SliceNavigationController generates * ITK events to tell observers, like a BaseRenderer, when the selected slice * or timestep changes. * * SliceNavigationControllers are registered as listeners to GlobalInteraction * by the QmitkStdMultiWidget. In ExecuteAction, the controllers react to * PositionEvents by setting the steppers to the slice which is nearest to the * point of the PositionEvent. * * Example: * \code * // Initialization * sliceCtrl = mitk::SliceNavigationController::New(); * * // Tell the navigator the geometry to be sliced (with geometry a * // Geometry3D::ConstPointer) * sliceCtrl->SetInputWorldGeometry(geometry.GetPointer()); * * // Tell the navigator in which direction it shall slice the data * sliceCtrl->SetViewDirection(mitk::SliceNavigationController::Axial); * * // Connect one or more BaseRenderer to this navigator, i.e.: events sent * // by the navigator when stepping through the slices (e.g. by * // sliceCtrl->GetSlice()->Next()) will be received by the BaseRenderer * // (in this example only slice-changes, see also ConnectGeometryTimeEvent * // and ConnectGeometryEvents.) * sliceCtrl->ConnectGeometrySliceEvent(renderer.GetPointer()); * * //create a world geometry and send the information to the connected renderer(s) * sliceCtrl->Update(); * \endcode * * * You can connect visible navigators to a SliceNavigationController, e.g., a * QmitkSliderNavigator (for Qt): * * \code * // Create the visible navigator (a slider with a spin-box) * QmitkSliderNavigator* navigator = * new QmitkSliderNavigator(parent, "slidernavigator"); * * // Connect the navigator to the slice-stepper of the * // SliceNavigationController. For initialization (position, mininal and * // maximal values) the values of the SliceNavigationController are used. * // Thus, accessing methods of a navigator is normally not necessary, since * // everything can be set via the (Qt-independent) SliceNavigationController. * // The QmitkStepperAdapter converts the Qt-signals to Qt-independent * // itk-events. * new QmitkStepperAdapter(navigator, sliceCtrl->GetSlice(), "navigatoradaptor"); * \endcode * * If you do not want that all renderwindows are updated when a new slice is * selected, you can use a specific RenderingManager, which updates only those * renderwindows that should be updated. This is sometimes useful when a 3D view * does not need to be updated when the slices in some 2D views are changed. * QmitkSliderNavigator (for Qt): * * \code * // create a specific RenderingManager * mitk::RenderingManager::Pointer myManager = mitk::RenderingManager::New(); * * // tell the RenderingManager to update only renderwindow1 and renderwindow2 * myManager->AddRenderWindow(renderwindow1); * myManager->AddRenderWindow(renderwindow2); * * // tell the SliceNavigationController of renderwindow1 and renderwindow2 * // to use the specific RenderingManager instead of the global one * renderwindow1->GetSliceNavigationController()->SetRenderingManager(myManager); * renderwindow2->GetSliceNavigationController()->SetRenderingManager(myManager); * \endcode * * \todo implement for non-evenly-timed geometry! * \ingroup NavigationControl */ class MITK_CORE_EXPORT SliceNavigationController : public BaseController { public: mitkClassMacro(SliceNavigationController,BaseController); itkNewMacro(Self); mitkNewMacro1Param(Self, const char *); /** * \brief Possible view directions, \a Original will uses * the Geometry2D instances in a SlicedGeometry3D provided * as input world geometry (by SetInputWorldGeometry). */ enum ViewDirection { #ifdef _MSC_VER Transversal, // deprecated #endif Axial = 0, Sagittal, Frontal, Original }; #ifdef __GNUC__ __attribute__ ((deprecated)) static const ViewDirection Transversal = ViewDirection(Axial); #endif /** - * \brief Set the input world geometry out of which the + * \brief Set the input world geometry3D out of which the * geometries for slicing will be created. + * + * Any previous previous set input geometry (3D or Time) will + * be ignored in future. */ - void SetInputWorldGeometry(const mitk::Geometry3D* geometry); - itkGetConstObjectMacro(InputWorldGeometry, mitk::Geometry3D); + void SetInputWorldGeometry3D(const mitk::Geometry3D* geometry); + itkGetConstObjectMacro(InputWorldGeometry3D, mitk::Geometry3D); + + + void SetInputWorldTimeGeometry(const mitk::TimeGeometry* geometry); + itkGetConstObjectMacro(InputWorldTimeGeometry, mitk::TimeGeometry); /** * \brief Access the created geometry */ - itkGetConstObjectMacro(CreatedWorldGeometry, mitk::Geometry3D); + itkGetConstObjectMacro(CreatedWorldGeometry, mitk::TimeGeometry); /** * \brief Set the desired view directions * * \sa ViewDirection * \sa Update(ViewDirection viewDirection, bool top = true, * bool frontside = true, bool rotated = false) */ itkSetEnumMacro(ViewDirection, ViewDirection); itkGetEnumMacro(ViewDirection, ViewDirection); /** * \brief Set the default view direction * * This is used to re-initialize the view direction of the SNC to the * default value with SetViewDirectionToDefault() * * \sa ViewDirection * \sa Update(ViewDirection viewDirection, bool top = true, * bool frontside = true, bool rotated = false) */ itkSetEnumMacro(DefaultViewDirection, ViewDirection); itkGetEnumMacro(DefaultViewDirection, ViewDirection); virtual void SetViewDirectionToDefault(); /** * \brief Do the actual creation and send it to the connected * observers (renderers) * */ virtual void Update(); /** * \brief Extended version of Update, additionally allowing to * specify the direction/orientation of the created geometry. * */ virtual void Update(ViewDirection viewDirection, bool top = true, bool frontside = true, bool rotated = false); /** * \brief Send the created geometry to the connected * observers (renderers) * * Called by Update(). */ virtual void SendCreatedWorldGeometry(); /** * \brief Tell observers to re-read the currently selected 2D geometry * * Called by mitk::SlicesRotator during rotation. */ virtual void SendCreatedWorldGeometryUpdate(); /** * \brief Send the currently selected slice to the connected * observers (renderers) * * Called by Update(). */ virtual void SendSlice(); /** * \brief Send the currently selected time to the connected * observers (renderers) * * Called by Update(). */ virtual void SendTime(); /** * \brief Set the RenderingManager to be used * * If \a NULL, the default RenderingManager will be used. */ itkSetObjectMacro(RenderingManager, RenderingManager); mitk::RenderingManager* GetRenderingManager() const; #pragma GCC visibility push(default) itkEventMacro( UpdateEvent, itk::AnyEvent ); #pragma GCC visibility pop - class MITK_CORE_EXPORT TimeSlicedGeometryEvent : public itk::AnyEvent + class MITK_CORE_EXPORT TimeGeometryEvent : public itk::AnyEvent { public: - typedef TimeSlicedGeometryEvent Self; + typedef TimeGeometryEvent Self; typedef itk::AnyEvent Superclass; - TimeSlicedGeometryEvent( - TimeSlicedGeometry* aTimeSlicedGeometry, unsigned int aPos) - : m_TimeSlicedGeometry(aTimeSlicedGeometry), m_Pos(aPos) + TimeGeometryEvent( + TimeGeometry* aTimeGeometry, unsigned int aPos) + : m_TimeGeometry(aTimeGeometry), m_Pos(aPos) {} - virtual ~TimeSlicedGeometryEvent() + virtual ~TimeGeometryEvent() {} virtual const char * GetEventName() const - { return "TimeSlicedGeometryEvent"; } + { return "TimeGeometryEvent"; } virtual bool CheckEvent(const ::itk::EventObject* e) const { return dynamic_cast(e); } virtual ::itk::EventObject* MakeObject() const - { return new Self(m_TimeSlicedGeometry, m_Pos); } + { return new Self(m_TimeGeometry, m_Pos); } - TimeSlicedGeometry* GetTimeSlicedGeometry() const - { return m_TimeSlicedGeometry; } + TimeGeometry* GetTimeGeometry() const + { return m_TimeGeometry; } unsigned int GetPos() const { return m_Pos; } private: - TimeSlicedGeometry::Pointer m_TimeSlicedGeometry; + TimeGeometry::Pointer m_TimeGeometry; unsigned int m_Pos; - // TimeSlicedGeometryEvent(const Self&); + // TimeGeometryEvent(const Self&); void operator=(const Self&); //just hide }; - mitkTimeSlicedGeometryEventMacro( - GeometrySendEvent,TimeSlicedGeometryEvent ); - mitkTimeSlicedGeometryEventMacro( - GeometryUpdateEvent, TimeSlicedGeometryEvent ); - mitkTimeSlicedGeometryEventMacro( - GeometryTimeEvent, TimeSlicedGeometryEvent ); - mitkTimeSlicedGeometryEventMacro( - GeometrySliceEvent, TimeSlicedGeometryEvent ); + mitkTimeGeometryEventMacro( + GeometrySendEvent,TimeGeometryEvent ); + mitkTimeGeometryEventMacro( + GeometryUpdateEvent, TimeGeometryEvent ); + mitkTimeGeometryEventMacro( + GeometryTimeEvent, TimeGeometryEvent ); + mitkTimeGeometryEventMacro( + GeometrySliceEvent, TimeGeometryEvent ); template void ConnectGeometrySendEvent(T* receiver) { typedef typename itk::ReceptorMemberCommand::Pointer ReceptorMemberCommandPointer; ReceptorMemberCommandPointer eventReceptorCommand = itk::ReceptorMemberCommand::New(); eventReceptorCommand->SetCallbackFunction(receiver, &T::SetGeometry); unsigned long tag = AddObserver(GeometrySendEvent(NULL,0), eventReceptorCommand); m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); } template void ConnectGeometryUpdateEvent(T* receiver) { typedef typename itk::ReceptorMemberCommand::Pointer ReceptorMemberCommandPointer; ReceptorMemberCommandPointer eventReceptorCommand = itk::ReceptorMemberCommand::New(); eventReceptorCommand->SetCallbackFunction(receiver, &T::UpdateGeometry); unsigned long tag = AddObserver(GeometryUpdateEvent(NULL,0), eventReceptorCommand); m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); } template void ConnectGeometrySliceEvent(T* receiver, bool connectSendEvent=true) { typedef typename itk::ReceptorMemberCommand::Pointer ReceptorMemberCommandPointer; ReceptorMemberCommandPointer eventReceptorCommand = itk::ReceptorMemberCommand::New(); eventReceptorCommand->SetCallbackFunction(receiver, &T::SetGeometrySlice); unsigned long tag = AddObserver(GeometrySliceEvent(NULL,0), eventReceptorCommand); m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); if(connectSendEvent) ConnectGeometrySendEvent(receiver); } template void ConnectGeometryTimeEvent(T* receiver, bool connectSendEvent=true) { typedef typename itk::ReceptorMemberCommand::Pointer ReceptorMemberCommandPointer; ReceptorMemberCommandPointer eventReceptorCommand = itk::ReceptorMemberCommand::New(); eventReceptorCommand->SetCallbackFunction(receiver, &T::SetGeometryTime); unsigned long tag = AddObserver(GeometryTimeEvent(NULL,0), eventReceptorCommand); m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); if(connectSendEvent) ConnectGeometrySendEvent(receiver); } template void ConnectGeometryEvents(T* receiver) { //connect sendEvent only once ConnectGeometrySliceEvent(receiver, false); ConnectGeometryTimeEvent(receiver); } // use a templated method to get the right offset when casting to void* template void Disconnect(T* receiver) { ObserverTagsMapType::iterator i = m_ReceiverToObserverTagsMap.find(static_cast(receiver)); if (i == m_ReceiverToObserverTagsMap.end()) return; const std::list& tags = i->second; for (std::list::const_iterator tagIter = tags.begin(); tagIter != tags.end(); ++tagIter) { RemoveObserver(*tagIter); } m_ReceiverToObserverTagsMap.erase(i); } Message<> crosshairPositionEvent; /** * \brief To connect multiple SliceNavigationController, we can * act as an observer ourselves: implemented interface * \warning not implemented */ virtual void SetGeometry(const itk::EventObject & geometrySliceEvent); /** * \brief To connect multiple SliceNavigationController, we can * act as an observer ourselves: implemented interface */ virtual void SetGeometrySlice(const itk::EventObject & geometrySliceEvent); /** * \brief To connect multiple SliceNavigationController, we can * act as an observer ourselves: implemented interface */ virtual void SetGeometryTime(const itk::EventObject & geometryTimeEvent); /** \brief Positions the SNC according to the specified point */ void SelectSliceByPoint( const mitk::Point3D &point ); - - /** \brief Returns the TimeSlicedGeometry created by the SNC. */ - const mitk::TimeSlicedGeometry *GetCreatedWorldGeometry(); - + /** \brief Returns the TimeGeometry created by the SNC. */ + mitk::TimeGeometry *GetCreatedWorldGeometry(); /** \brief Returns the Geometry3D of the currently selected time step. */ const mitk::Geometry3D *GetCurrentGeometry3D(); /** \brief Returns the currently selected Plane in the current * Geometry3D (if existent). */ const mitk::PlaneGeometry *GetCurrentPlaneGeometry(); /** \brief Sets the BaseRenderer associated with this SNC (if any). While * the BaseRenderer is not directly used by SNC, this is a convenience * method to enable BaseRenderer access via the SNC. */ void SetRenderer( BaseRenderer *renderer ); /** \brief Gets the BaseRenderer associated with this SNC (if any). While * the BaseRenderer is not directly used by SNC, this is a convenience * method to enable BaseRenderer access via the SNC. Returns NULL if no * BaseRenderer has been specified*/ BaseRenderer *GetRenderer() const; /** \brief Re-orients the slice stack. All slices will be oriented to the given normal vector. The given point (world coordinates) defines the selected slice. Careful: The resulting axis vectors are not clearly defined this way. If you want to define them clearly, use ReorientSlices (const mitk::Point3D &point, const mitk::Vector3D &axisVec0, const mitk::Vector3D &axisVec1). */ void ReorientSlices( const mitk::Point3D &point, const mitk::Vector3D &normal ); /** \brief Re-orients the slice stack so that all planes are oriented according to the * given axis vectors. The given Point eventually defines selected slice. */ void ReorientSlices( const mitk::Point3D &point, const mitk::Vector3D &axisVec0, const mitk::Vector3D &axisVec1 ); virtual bool ExecuteAction( Action* action, mitk::StateEvent const* stateEvent); void ExecuteOperation(Operation* operation); /** * \brief Feature option to lock planes during mouse interaction. * This option flag disables the mouse event which causes the center * cross to move near by. */ itkSetMacro(SliceLocked, bool); itkGetMacro(SliceLocked, bool); itkBooleanMacro(SliceLocked); /** * \brief Feature option to lock slice rotation. * * This option flag disables separately the rotation of a slice which is * implemented in mitkSliceRotator. */ itkSetMacro(SliceRotationLocked, bool); itkGetMacro(SliceRotationLocked, bool); itkBooleanMacro(SliceRotationLocked); /** * \brief Adjusts the numerical range of the slice stepper according to * the current geometry orientation of this SNC's SlicedGeometry. */ void AdjustSliceStepperRange(); protected: SliceNavigationController(const char * type = NULL); virtual ~SliceNavigationController(); /* template static void buildstring( mitkIpPicDescriptor *pic, itk::Point p, std::string &s, T = 0) { std::string value; std::stringstream stream; stream.imbue(std::locale::classic()); stream<=0 && p[1] >=0 && p[2]>=0) && (unsigned int)p[0] < pic->n[0] && (unsigned int)p[1] < pic->n[1] && (unsigned int)p[2] < pic->n[2] ) { if(pic->bpe!=24) { stream<<(((T*) pic->data)[ p[0] + p[1]*pic->n[0] + p[2]*pic->n[0]*pic->n[1] ]); } else { stream<<(((T*) pic->data)[p[0]*3 + 0 + p[1]*pic->n[0]*3 + p[2]*pic->n[0]*pic->n[1]*3 ]); stream<<(((T*) pic->data)[p[0]*3 + 1 + p[1]*pic->n[0]*3 + p[2]*pic->n[0]*pic->n[1]*3 ]); stream<<(((T*) pic->data)[p[0]*3 + 2 + p[1]*pic->n[0]*3 + p[2]*pic->n[0]*pic->n[1]*3 ]); } s = stream.str(); } else { s+= "point out of data"; } }; */ - mitk::Geometry3D::ConstPointer m_InputWorldGeometry; - mitk::Geometry3D::Pointer m_ExtendedInputWorldGeometry; + mitk::Geometry3D::ConstPointer m_InputWorldGeometry3D; + mitk::TimeGeometry::ConstPointer m_InputWorldTimeGeometry; - mitk::TimeSlicedGeometry::Pointer m_CreatedWorldGeometry; + mitk::TimeGeometry::Pointer m_CreatedWorldGeometry; ViewDirection m_ViewDirection; ViewDirection m_DefaultViewDirection; mitk::RenderingManager::Pointer m_RenderingManager; mitk::BaseRenderer *m_Renderer; itkSetMacro(Top, bool); itkGetMacro(Top, bool); itkBooleanMacro(Top); itkSetMacro(FrontSide, bool); itkGetMacro(FrontSide, bool); itkBooleanMacro(FrontSide); itkSetMacro(Rotated, bool); itkGetMacro(Rotated, bool); itkBooleanMacro(Rotated); bool m_Top; bool m_FrontSide; bool m_Rotated; bool m_BlockUpdate; bool m_SliceLocked; bool m_SliceRotationLocked; unsigned int m_OldPos; typedef std::map > ObserverTagsMapType; ObserverTagsMapType m_ReceiverToObserverTagsMap; }; } // namespace mitk #endif /* SLICENAVIGATIONCONTROLLER_H_HEADER_INCLUDED_C1C55A2F */ diff --git a/Core/Code/Controllers/mitkSlicesRotator.cpp b/Core/Code/Controllers/mitkSlicesRotator.cpp index b2d66aa13a..7c0d8d8abb 100644 --- a/Core/Code/Controllers/mitkSlicesRotator.cpp +++ b/Core/Code/Controllers/mitkSlicesRotator.cpp @@ -1,519 +1,512 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include -#include #include #include #include "rotate_cursor.xpm" namespace mitk { SlicesRotator::Pointer SlicesRotator::New() { return SlicesRotator::New("slices-rotator"); } SlicesRotator::SlicesRotator(const char* machine) : SlicesCoordinator(machine) { // make sure that AcSWITCHON and AcSWITCHOFF are defined int constants somewhere (e.g. mitkInteractionConst.h) CONNECT_ACTION( AcMOVE, DoSelectSlice ); CONNECT_ACTION( AcCHECKPOINT, DoDecideBetweenRotationAndSliceSelection ); CONNECT_ACTION( AcROTATESTART, DoStartRotation ); CONNECT_ACTION( AcROTATE, DoRotationStep ); CONNECT_ACTION( AcROTATEEND, DoEndRotation ); } SlicesRotator::~SlicesRotator() { } void SlicesRotator::OnSliceControllerAdded(SliceNavigationController* snc) { if (!snc) return; snc->ConnectGeometrySendEvent(this); // connects creation of new world geometry to Self::SetGeometry } void SlicesRotator::OnSliceControllerRemoved(SliceNavigationController* snc) { if (!snc) return; // nothing to do, base class does the bookkeeping } /// Is called whenever a SliceNavigationController invokes an event. Will update the list /// of SliceNavigationControllers that can handle rotation void SlicesRotator::SetGeometry(const itk::EventObject& /*EventObject*/) { // there is no way to determine the sender? // ==> update whole list of SNCs UpdateRotatableSNCs(); } void SlicesRotator::RotateToPoint( SliceNavigationController *rotationPlaneSNC, SliceNavigationController *rotatedPlaneSNC, const Point3D &point, bool linked ) { MITK_WARN << "Deprecated function! Use SliceNavigationController::ReorientSlices() instead"; SliceNavigationController *thirdSNC = NULL; SNCVector::iterator iter; for ( iter = m_RotatableSNCs.begin(); iter != m_RotatableSNCs.end(); ++iter ) { if ( ((*iter) != rotationPlaneSNC) && ((*iter) != rotatedPlaneSNC) ) { thirdSNC = *iter; break; } } if ( thirdSNC == NULL ) { return; } const PlaneGeometry *rotationPlane = rotationPlaneSNC->GetCurrentPlaneGeometry(); const PlaneGeometry *rotatedPlane = rotatedPlaneSNC->GetCurrentPlaneGeometry(); const PlaneGeometry *thirdPlane = thirdSNC->GetCurrentPlaneGeometry(); if ( (rotationPlane == NULL) || (rotatedPlane == NULL) || (thirdPlane == NULL) ) { return; } if ( rotatedPlane->DistanceFromPlane( point ) < 0.001 ) { // Skip irrelevant rotations return; } Point3D projectedPoint; Line3D intersection; Point3D rotationCenter; if ( !rotationPlane->Project( point, projectedPoint ) || !rotationPlane->IntersectionLine( rotatedPlane, intersection ) || !thirdPlane->IntersectionPoint( intersection, rotationCenter ) ) { return; } // All pre-requirements are met; execute the rotation Point3D referencePoint = intersection.Project( projectedPoint ); Vector3D toProjected = referencePoint - rotationCenter; Vector3D toCursor = projectedPoint - rotationCenter; // cross product: | A x B | = |A| * |B| * sin(angle) Vector3D axisOfRotation; vnl_vector_fixed< ScalarType, 3 > vnlDirection = vnl_cross_3d( toCursor.GetVnlVector(), toProjected.GetVnlVector() ); axisOfRotation.SetVnlVector( vnlDirection ); // scalar product: A * B = |A| * |B| * cos(angle) // tan = sin / cos ScalarType angle = - atan2( (double)(axisOfRotation.GetNorm()), (double)(toCursor * toProjected) ); angle *= 180.0 / vnl_math::pi; // create RotationOperation and apply to all SNCs that should be rotated RotationOperation op(OpROTATE, rotationCenter, axisOfRotation, angle); if ( !linked ) { BaseRenderer *renderer = rotatedPlaneSNC->GetRenderer(); if ( renderer == NULL ) { return; } DisplayGeometry *displayGeometry = renderer->GetDisplayGeometry(); Point2D point2DWorld, point2DDisplayPre, point2DDisplayPost; displayGeometry->Map( rotationCenter, point2DWorld ); displayGeometry->WorldToDisplay( point2DWorld, point2DDisplayPre ); - const Geometry3D *geometry3D = rotatedPlaneSNC->GetCreatedWorldGeometry(); - const TimeSlicedGeometry *timeSlicedGeometry = - dynamic_cast( geometry3D ); - if ( !timeSlicedGeometry ) + TimeGeometry *timeGeometry= rotatedPlaneSNC->GetCreatedWorldGeometry(); + if ( !timeGeometry ) { return; } - const_cast< TimeSlicedGeometry * >( timeSlicedGeometry )->ExecuteOperation( &op ); + timeGeometry->ExecuteOperation( &op ); displayGeometry->Map( rotationCenter, point2DWorld ); displayGeometry->WorldToDisplay( point2DWorld, point2DDisplayPost ); Vector2D vector2DDisplayDiff = point2DDisplayPost - point2DDisplayPre; //Vector2D origin = displayGeometry->GetOriginInMM(); displayGeometry->MoveBy( vector2DDisplayDiff ); rotatedPlaneSNC->SendCreatedWorldGeometryUpdate(); } else { SNCVector::iterator iter; for ( iter = m_RotatableSNCs.begin(); iter != m_RotatableSNCs.end(); ++iter ) { BaseRenderer *renderer = (*iter)->GetRenderer(); if ( renderer == NULL ) { continue; } DisplayGeometry *displayGeometry = renderer->GetDisplayGeometry(); Point2D point2DWorld, point2DDisplayPre, point2DDisplayPost; displayGeometry->Map( rotationCenter, point2DWorld ); displayGeometry->WorldToDisplay( point2DWorld, point2DDisplayPre ); - const Geometry3D* geometry3D = (*iter)->GetCreatedWorldGeometry(); - const TimeSlicedGeometry *timeSlicedGeometry = - dynamic_cast( geometry3D ); - if ( !timeSlicedGeometry ) + TimeGeometry* timeGeometry = (*iter)->GetCreatedWorldGeometry(); + if ( !timeGeometry ) { continue; } - const_cast< TimeSlicedGeometry * >( timeSlicedGeometry )->ExecuteOperation( &op ); + timeGeometry->ExecuteOperation( &op ); displayGeometry->Map( rotationCenter, point2DWorld ); displayGeometry->WorldToDisplay( point2DWorld, point2DDisplayPost ); Vector2D vector2DDisplayDiff = point2DDisplayPost - point2DDisplayPre; //Vector2D origin = displayGeometry->GetOriginInMM(); displayGeometry->MoveBy( vector2DDisplayDiff ); (*iter)->SendCreatedWorldGeometryUpdate(); } } } // end RotateToPoint /// Updates the list of SliceNavigationControllers that can handle rotation void SlicesRotator::UpdateRotatableSNCs() { m_RotatableSNCs.clear(); for (SNCVector::iterator iter = m_SliceNavigationControllers.begin(); iter != m_SliceNavigationControllers.end(); ++iter) { - const Geometry3D* geometry3D = (*iter)->GetCreatedWorldGeometry(); - const TimeSlicedGeometry* timeSlicedGeometry = dynamic_cast( geometry3D ); - if (!timeSlicedGeometry) continue; + const TimeGeometry* timeGeometry = (*iter)->GetCreatedWorldGeometry(); + if (!timeGeometry) continue; - const SlicedGeometry3D* slicedGeometry = dynamic_cast( timeSlicedGeometry->GetGeometry3D(0) ); + const SlicedGeometry3D* slicedGeometry = dynamic_cast( timeGeometry->GetGeometryForTimeStep(0) ); if (!slicedGeometry) continue; if (slicedGeometry->IsValidSlice(0)) { // there were some lines of additional checks here in previous versions, // all of which would always evaluate to true, so the check was irrelevant. // Since the original intent was not documented, I removed all checks, // i.e. m_RotatableSNCs ends up being a list of all the registered // SliceNavigationControllers which have a SlicedGeometry3D with at least one slice, // which covers most standard cases. m_RotatableSNCs.push_back( *iter ); } } } bool SlicesRotator::DoSelectSlice(Action* a, const StateEvent* e) { // just reach through for (SNCVector::iterator iter = m_RotatableSNCs.begin(); iter != m_RotatableSNCs.end(); ++iter) { if ( !(*iter)->GetSliceLocked() ) { (*iter)->ExecuteAction(a,e); } } return true; } bool SlicesRotator::DoDecideBetweenRotationAndSliceSelection(Action*, const StateEvent* e) { // Decide between moving and rotation slices. // For basic decision logic see class documentation. /* Detail logic: 1. Find the SliceNavigationController that has sent the event: this one defines our rendering plane and will NOT be rotated. Must not even be counted or checked.. 2. Inspect every other SliceNavigationController - calculate the line intersection of this SliceNavigationController's plane with our rendering plane - if there is no interesection, ignore and continue - IF there is an intersection - check the mouse cursor's distance from that line. 0. if the line is NOT near the cursor, remember the plane as "one of the other planes" (which can be rotated in "locked" mode) 1. on first line near the cursor, just remember this intersection line as THE other plane that we want to rotate 2. on every consecutive line near the cursor, check if the line is geometrically identical to the line that we want to rotate - if yes, we just push this line to the "other" lines and rotate it along - if no, then we have a situation where the mouse is near two other lines (e.g. crossing point) and don't want to rotate */ const DisplayPositionEvent* posEvent = dynamic_cast(e->GetEvent()); if (!posEvent) return false; BaseRenderer* clickedRenderer = e->GetEvent()->GetSender(); const PlaneGeometry* ourViewportGeometry = dynamic_cast( clickedRenderer->GetCurrentWorldGeometry2D() ); if (!ourViewportGeometry) return false; DisplayGeometry* clickedDisplayGeometry = clickedRenderer->GetDisplayGeometry(); if (!clickedDisplayGeometry) return false; MITK_DEBUG << "============================================="; MITK_DEBUG << "Renderer under cursor is " << clickedRenderer->GetName(); Point3D cursorPosition = posEvent->GetWorldPosition(); const PlaneGeometry* geometryToBeRotated = NULL; // this one is under the mouse cursor const PlaneGeometry* anyOtherGeometry = NULL; // this is also visible (for calculation of intersection ONLY) Line3D intersectionLineWithGeometryToBeRotated; bool hitMultipleLines(false); m_SNCsToBeRotated.clear(); const double threshholdDistancePixels = 12.0; for (SNCVector::iterator iter = m_RotatableSNCs.begin(); iter != m_RotatableSNCs.end(); ++iter) { // If the mouse cursor is in 3D Renderwindow, do not check for intersecting planes. if (clickedRenderer->GetMapperID() == BaseRenderer::Standard3D) break; const PlaneGeometry* otherRenderersRenderPlane = (*iter)->GetCurrentPlaneGeometry(); if (otherRenderersRenderPlane == NULL) continue; // ignore, we don't see a plane MITK_DEBUG << " Checking plane of renderer " << (*iter)->GetRenderer()->GetName(); // check if there is an intersection Line3D intersectionLine; // between rendered/clicked geometry and the one being analyzed if (!ourViewportGeometry->IntersectionLine( otherRenderersRenderPlane, intersectionLine )) { continue; // we ignore this plane, it's parallel to our plane } // check distance from intersection line double distanceFromIntersectionLine = intersectionLine.Distance( cursorPosition ); ScalarType distancePixels = distanceFromIntersectionLine / clickedDisplayGeometry->GetScaleFactorMMPerDisplayUnit(); MITK_DEBUG << " Distance of plane from cursor " << distanceFromIntersectionLine << " mm, which is around " << distancePixels << " px" ; // far away line, only remember for linked rotation if necessary if (distanceFromIntersectionLine > threshholdDistancePixels) { MITK_DEBUG << " Plane is too far away --> remember as otherRenderersRenderPlane"; anyOtherGeometry = otherRenderersRenderPlane; // we just take the last one, so overwrite each iteration (we just need some crossing point) // TODO what about multiple crossings? NOW we have undefined behavior / random crossing point is used if (m_LinkPlanes) { m_SNCsToBeRotated.push_back(*iter); } } else // close to cursor { MITK_DEBUG << " Plane is close enough to cursor..."; if ( geometryToBeRotated == NULL ) // first one close to the cursor { MITK_DEBUG << " It is the first close enough geometry, remember as geometryToBeRotated"; geometryToBeRotated = otherRenderersRenderPlane; intersectionLineWithGeometryToBeRotated = intersectionLine; m_SNCsToBeRotated.push_back(*iter); } else { MITK_DEBUG << " Second or later close enough geometry"; // compare to the line defined by geometryToBeRotated: if identical, just rotate this otherRenderersRenderPlane together with the primary one // if different, DON'T rotate if ( intersectionLine.IsParallel( intersectionLineWithGeometryToBeRotated ) && intersectionLine.Distance( intersectionLineWithGeometryToBeRotated.GetPoint1() ) < mitk::eps ) { MITK_DEBUG << " This line is the same as intersectionLineWithGeometryToBeRotated which we already know"; m_SNCsToBeRotated.push_back(*iter); } else { MITK_DEBUG << " This line is NOT the same as intersectionLineWithGeometryToBeRotated which we already know"; hitMultipleLines = true; } } } } bool moveSlices(true); if ( geometryToBeRotated && anyOtherGeometry && ourViewportGeometry && !hitMultipleLines ) { // assure all three are valid, so calculation of center of rotation can be done moveSlices = false; } MITK_DEBUG << "geometryToBeRotated: " << (void*)geometryToBeRotated; MITK_DEBUG << "anyOtherGeometry: " << (void*)anyOtherGeometry; MITK_DEBUG << "ourViewportGeometry: " << (void*)ourViewportGeometry; MITK_DEBUG << "hitMultipleLines? " << hitMultipleLines; MITK_DEBUG << "moveSlices? " << moveSlices; std::auto_ptr decidedEvent; // question in state machine is: "rotate?" if (moveSlices) // i.e. NOT rotate { // move all planes to posEvent->GetWorldPosition() decidedEvent.reset( new StateEvent(EIDNO, e->GetEvent()) ); MITK_DEBUG << "Rotation not possible, not enough information (other planes crossing rendering plane) "; } else { // we DO have enough information for rotation m_LastCursorPosition = intersectionLineWithGeometryToBeRotated.Project(cursorPosition); // remember where the last cursor position ON THE LINE has been observed if (anyOtherGeometry->IntersectionPoint(intersectionLineWithGeometryToBeRotated, m_CenterOfRotation)) // find center of rotation by intersection with any of the OTHER lines { decidedEvent.reset( new StateEvent(EIDYES, e->GetEvent()) ); MITK_DEBUG << "Rotation possible"; } else { MITK_DEBUG << "Rotation not possible, cannot determine the center of rotation!?"; decidedEvent.reset( new StateEvent(EIDNO, e->GetEvent()) ); } } this->HandleEvent( decidedEvent.get() ); return true; } bool SlicesRotator::DoStartRotation(Action*, const StateEvent*) { this->SetMouseCursor( rotate_cursor_xpm, 0, 0 ); this->InvokeEvent( SliceRotationEvent() ); // notify listeners return true; } bool SlicesRotator::DoEndRotation(Action*, const StateEvent*) { this->ResetMouseCursor(); this->InvokeEvent( SliceRotationEvent() ); // notify listeners return true; } bool SlicesRotator::DoRotationStep(Action*, const StateEvent* e) { const DisplayPositionEvent* posEvent = dynamic_cast(e->GetEvent()); if (!posEvent) return false; Point3D cursor = posEvent->GetWorldPosition(); Vector3D toProjected = m_LastCursorPosition - m_CenterOfRotation; Vector3D toCursor = cursor - m_CenterOfRotation; // cross product: | A x B | = |A| * |B| * sin(angle) Vector3D axisOfRotation; vnl_vector_fixed< ScalarType, 3 > vnlDirection = vnl_cross_3d( toCursor.GetVnlVector(), toProjected.GetVnlVector() ); axisOfRotation.SetVnlVector(vnlDirection); // scalar product: A * B = |A| * |B| * cos(angle) // tan = sin / cos ScalarType angle = - atan2( (double)(axisOfRotation.GetNorm()), (double)(toCursor * toProjected) ); angle *= 180.0 / vnl_math::pi; m_LastCursorPosition = cursor; // create RotationOperation and apply to all SNCs that should be rotated RotationOperation rotationOperation(OpROTATE, m_CenterOfRotation, axisOfRotation, angle); // iterate the OTHER slice navigation controllers: these are filled in DoDecideBetweenRotationAndSliceSelection for (SNCVector::iterator iter = m_SNCsToBeRotated.begin(); iter != m_SNCsToBeRotated.end(); ++iter) { // - remember the center of rotation on the 2D display BEFORE rotation // - execute rotation // - calculate new center of rotation on 2D display // - move display IF the center of rotation has moved slightly before and after rotation // DM 2012-10: this must probably be due to rounding errors only, right? // We don't have documentation on if/why this code is needed BaseRenderer *renderer = (*iter)->GetRenderer(); if ( !renderer ) continue; DisplayGeometry *displayGeometry = renderer->GetDisplayGeometry(); Point2D rotationCenter2DWorld, point2DDisplayPreRotation, point2DDisplayPostRotation; displayGeometry->Map( m_CenterOfRotation, rotationCenter2DWorld ); displayGeometry->WorldToDisplay( rotationCenter2DWorld, point2DDisplayPreRotation ); - const Geometry3D* geometry3D = (*iter)->GetCreatedWorldGeometry(); - const TimeSlicedGeometry* timeSlicedGeometry = dynamic_cast(geometry3D); - if (!timeSlicedGeometry) continue; + TimeGeometry* timeGeometry = (*iter)->GetCreatedWorldGeometry(); + if (!timeGeometry) continue; - const_cast(timeSlicedGeometry)->ExecuteOperation(&rotationOperation); + timeGeometry->ExecuteOperation(&rotationOperation); displayGeometry->Map( m_CenterOfRotation, rotationCenter2DWorld ); displayGeometry->WorldToDisplay( rotationCenter2DWorld, point2DDisplayPostRotation ); Vector2D vector2DDisplayDiff = point2DDisplayPostRotation - point2DDisplayPreRotation; displayGeometry->MoveBy( vector2DDisplayDiff ); (*iter)->SendCreatedWorldGeometryUpdate(); } RenderingManager::GetInstance()->RequestUpdateAll(); this->InvokeEvent( SliceRotationEvent() ); // notify listeners return true; } } // namespace diff --git a/Core/Code/Controllers/mitkSlicesRotator.h b/Core/Code/Controllers/mitkSlicesRotator.h index 780e78117b..7e815e1c70 100644 --- a/Core/Code/Controllers/mitkSlicesRotator.h +++ b/Core/Code/Controllers/mitkSlicesRotator.h @@ -1,165 +1,165 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #ifndef SLICESROTATOR_H_HEADER_INCLUDED_C1C55A2F #define SLICESROTATOR_H_HEADER_INCLUDED_C1C55A2F #include #pragma GCC visibility push(default) #include #pragma GCC visibility pop #include namespace mitk { /** \brief Coordinates rotation of multiple visible rendering planes (represented as lines in other render windows). \ingroup NavigationControl This class takes care of several SliceNavigationControllers and handles slice selection / slice rotation. It is added as listener to GlobalInteraction by QmitkStdMultiWidget. The SlicesRotator class adds the possibility of slice rotation to the "normal" behaviour of SliceNavigationControllers (which is picking one plane from a stack of planes). This additional class SlicesRotator is needed, because one has to be aware of multiple "visible slices" (selected Geometry2Ds of some SliceNavigationControllers) in order to choose between rotation and slice selection. Such functionality could not be implemented by a single SliceNavigationController. - Rotation is achieved by modifying (rotating) the generated TimeSlicedGeometry of the + Rotation is achieved by modifying (rotating) the generated TimeGeometry of the corresponding SliceNavigationControllers. \section mitkSlicesRotator_StandardCase The standard case: three orthogonal views (MPR) With SlicesRotator, the rule to choose between slice rotation and selection is simple: For a mouse down event, count the number of visible planes, which are "near" the cursor. If this number is 2 (one for the window, which currently holds the cursor, one for the intersection line of another visible slice), then initiate rotation, else select slices near the cursor. If the "LinkPlanes" flag is set, the rotation is applied to the planes of all registered SNCs, not only of the one associated with the directly selected plane. In contrast to the situation without the SlicesRotator, the SliceNavigationControllers are now NOT directly registered as listeners to GlobalInteraction. SlicesRotator is registered as a listener and decides whether something should be rotated or whether another slice should be selected. In the latter case, a PositionEvent is just forwarded to the SliceNavigationController. \section mitkSlicesRotator_GeneralizedCase The generalized case: any number of views Above section as well as the original implementation of this class assumes that we have exactly three 2D vies in our scene. This used to be the standard setup of the MITK associated application for a long time. With custom applications based on MITK it is easy to create different situations. One usual use case would be to have one extra render window display the contents of any of the other ones and behave exactly like it (could e.g. be used on a second screen). In this situation the above assumption "we rotate when there are exactly 2 slices close to the cursor" will not hold: since we always have two render windows displaying the exact same slice, the number of 2 is the minimum we get. Whenever the user clicks in one of those windows and the cursor is close to one of the orthogonal planes, we will get a count of 3 or more planes that are "close to the cursor". For the class to behave correctly, we actually need to distinguish three separate cases: 1. the cursor is not close to any orthogonal planes. This should result in slice selection. 2. the cursor is close to just one orthogonal plane OR multiple which are not distinguishable visually. This should result in rotation. 3. the cursor is close to multiple orthogonal planes which are rendered as distinguishable lines on the render window. This is the case when we hit the crosshair-center of the view. In this case, we need to also just select slices. \section mitkSlicesRotator_Solution Deciding between slice selection and rotation The "counting nearby lines in the renderwindow" can also work for the general case described above. Only one details needs to be accounted for: we must not count a line when it is identical to another line. I.e. we just count how many visible lines on the screen are very close to the cursor. When this number is 1, we rotate, otherwise we let the SliceNavigationControllers do their slice selection job. \sa SlicesSwiveller */ class MITK_CORE_EXPORT SlicesRotator : public SlicesCoordinator { public: mitkClassMacro(SlicesRotator, SlicesCoordinator); static Pointer New(); /** \brief New Macro with one parameter for creating this object with static New(..) method. Needs to be the "slices-rotator" pattern of StateMachine.xml to work as expected. **/ mitkNewMacro1Param(Self, const char*); /** \brief Callback for modifications in observed SliceNavigationControllers -- forwards to UpdateRotatableSNCs(). This method is called when an observed SliceNavigationController changes its world geometry. The connection is established by calling the other SliceNavigationController's method ConnectGeometrySendEvent (or similar). */ virtual void SetGeometry(const itk::EventObject& EventObject); /** \brief NOT USED by anything open-source. Deprecated. Highly obfuscated code. Use SliceNavigationController::ReorientSlices() instead! #Deprecated */ virtual void RotateToPoint( SliceNavigationController *rotationPlaneSNC, SliceNavigationController *rotatedPlaneSNC, const Point3D &point, bool linked = false ); protected: SlicesRotator(const char* machine); virtual ~SlicesRotator(); /** \brief Called from SlicesCoordinator after a new controller is added (to internal list m_SliceNavigationControllers). */ virtual void OnSliceControllerAdded(SliceNavigationController* snc); /* \brief Called from SlicesCoordinator after a new controller is being removed (to internal list m_SliceNavigationControllers). */ virtual void OnSliceControllerRemoved(SliceNavigationController* snc); /** \brief Check all observed SliceNavigationControllers: remember those that are rotatable in m_RotatableSNCs. */ virtual void UpdateRotatableSNCs(); // following methods called from superclass ExecuteAction bool DoSelectSlice(Action*, const StateEvent*); bool DoDecideBetweenRotationAndSliceSelection(Action*, const StateEvent*); bool DoStartRotation(Action*, const StateEvent*); bool DoEndRotation(Action*, const StateEvent*); bool DoRotationStep(Action*, const StateEvent*); SNCVector m_RotatableSNCs; /// all SNCs that currently have CreatedWorldGeometries, that can be rotated. SNCVector m_SNCsToBeRotated; /// all SNCs that will be rotated (exceptions are the ones parallel to the one being clicked) Point3D m_LastCursorPosition; /// used for calculation of the rotation angle Point3D m_CenterOfRotation; /// used for calculation of the rotation angle }; } // namespace #endif diff --git a/Core/Code/Controllers/mitkSlicesSwiveller.cpp b/Core/Code/Controllers/mitkSlicesSwiveller.cpp index a3e5230b57..a8eb2f57d1 100644 --- a/Core/Code/Controllers/mitkSlicesSwiveller.cpp +++ b/Core/Code/Controllers/mitkSlicesSwiveller.cpp @@ -1,405 +1,395 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkSlicesSwiveller.h" #include "mitkSliceNavigationController.h" #include "mitkStateEvent.h" #include "mitkAction.h" #include "mitkInteractionConst.h" #include "mitkDisplayPositionEvent.h" #include "mitkRotationOperation.h" #include "mitkBaseRenderer.h" #include "mitkRenderingManager.h" #include "mitkLine.h" #include "mitkGeometry3D.h" #include "mitkGeometry2D.h" #include "mitkPlaneGeometry.h" #include "mitkDisplayGeometry.h" #include "mitkSlicedGeometry3D.h" -#include "mitkTimeSlicedGeometry.h" #include namespace mitk { SlicesSwiveller::Pointer SlicesSwiveller::New() { return SlicesSwiveller::New("slices-rotator"); } SlicesSwiveller::SlicesSwiveller(const char* machine) : SlicesCoordinator(machine), m_PreviousRotationAngle( 0.0 ) { } SlicesSwiveller::~SlicesSwiveller() { } // check if the slices of this SliceNavigationController can be rotated (???) Possible void SlicesSwiveller::OnSliceControllerAdded(SliceNavigationController* snc) { if (!snc) return; // connects creation of new world geometry to Self::SetGeometry snc->ConnectGeometrySendEvent(this); } void SlicesSwiveller::OnSliceControllerRemoved(SliceNavigationController* snc) { if (!snc) return; // nothing to do } /// Is called whenever a SliceNavigationController invokes an event. Will // update the list of SliceNavigationControllers that can handle rotation void SlicesSwiveller::SetGeometry(const itk::EventObject& /*EventObject*/) { // there is no way to determine the sender? // ==> update whole list of SNCs UpdateRelevantSNCs(); } /// Updates the list of SliceNavigationControllers that can handle rotation void SlicesSwiveller::UpdateRelevantSNCs() { m_RelevantSNCs.clear(); SNCVector::iterator iter; for ( iter = m_SliceNavigationControllers.begin(); iter != m_SliceNavigationControllers.end(); ++iter) { - const Geometry3D* geometry3D = (*iter)->GetCreatedWorldGeometry(); - const TimeSlicedGeometry* timeSlicedGeometry = - dynamic_cast( geometry3D ); + const TimeGeometry* timeGeometry = (*iter)->GetCreatedWorldGeometry(); - if (!timeSlicedGeometry) continue; + if (!timeGeometry) continue; const SlicedGeometry3D* slicedGeometry = dynamic_cast( - timeSlicedGeometry->GetGeometry3D(0) ); + timeGeometry->GetGeometryForTimeStep(0) ); if (!slicedGeometry) continue; Geometry2D *firstSlice( NULL ); //Geometry2D *secondSlice( NULL ); if (slicedGeometry->IsValidSlice(0)) { firstSlice = slicedGeometry->GetGeometry2D(0); } // if (slicedGeometry->IsValidSlice(1)) // { // secondSlice = slicedGeometry->GetGeometry2D(1); // } // If the direction vector of these two slices is the same, then accept // this slice stack as rotatable Vector3D right1 = firstSlice->GetAxisVector(0); Vector3D up1 = firstSlice->GetAxisVector(1); vnl_vector_fixed< ScalarType, 3 > vnlDirection1 = vnl_cross_3d(right1.GetVnlVector(), up1.GetVnlVector()); Vector3D direction1; direction1.SetVnlVector(vnlDirection1); Vector3D right2 = firstSlice->GetAxisVector(0); Vector3D up2 = firstSlice->GetAxisVector(1); vnl_vector_fixed< ScalarType, 3 > vnlDirection2 = vnl_cross_3d(right2.GetVnlVector(), up2.GetVnlVector()); Vector3D direction2; direction2.SetVnlVector(vnlDirection2); bool equal = true; const ScalarType eps = 0.0001; for (int i = 0; i < 3; ++i) { if ( fabs(direction1[i] - direction2[i]) > eps ) { equal = false; } } if (equal) // equal direction vectors { m_RelevantSNCs.push_back( *iter ); } } } bool SlicesSwiveller ::ExecuteAction(Action* action, StateEvent const* stateEvent) { const ScalarType ThresholdDistancePixels = 6.0; bool ok = false; switch ( action->GetActionId() ) { case AcMOVE: { // just reach through SNCVector::iterator iter; for ( iter = m_RelevantSNCs.begin(); iter != m_RelevantSNCs.end(); ++iter ) { if ( !(*iter)->GetSliceRotationLocked() ) { (*iter)->ExecuteAction(action, stateEvent); } } ok = true; break; } case AcROTATE: { const DisplayPositionEvent *posEvent = dynamic_cast(stateEvent->GetEvent()); if (!posEvent) break; // Determine relative mouse movement projected onto world space Point2D cursor = posEvent->GetDisplayPosition(); Vector2D relativeCursor = cursor - m_ReferenceCursor; Vector3D relativeCursorAxis = m_RotationPlaneXVector * relativeCursor[0] + m_RotationPlaneYVector * relativeCursor[1]; // Determine rotation axis (perpendicular to rotation plane and cursor // movement) Vector3D rotationAxis = itk::CrossProduct( m_RotationPlaneNormal, relativeCursorAxis ); ScalarType rotationAngle = relativeCursor.GetNorm() / 2.0; // Restore the initial plane pose by undoing the previous rotation // operation RotationOperation op( OpROTATE, m_CenterOfRotation, m_PreviousRotationAxis, -m_PreviousRotationAngle ); SNCVector::iterator iter; for ( iter = m_SNCsToBeRotated.begin(); iter != m_SNCsToBeRotated.end(); ++iter ) { if ( !(*iter)->GetSliceRotationLocked() ) { - const Geometry3D* geometry3D = (*iter)->GetCreatedWorldGeometry(); - const TimeSlicedGeometry* timeSlicedGeometry = - dynamic_cast(geometry3D); - if (!timeSlicedGeometry) continue; - - const_cast(timeSlicedGeometry) - ->ExecuteOperation(&op); + TimeGeometry* timeGeometry = (*iter)->GetCreatedWorldGeometry(); + if (!timeGeometry) continue; + timeGeometry->ExecuteOperation(&op); (*iter)->SendCreatedWorldGeometryUpdate(); } } // Apply new rotation operation to all relevant SNCs RotationOperation op2( OpROTATE, m_CenterOfRotation, rotationAxis, rotationAngle ); for ( iter = m_SNCsToBeRotated.begin(); iter != m_SNCsToBeRotated.end(); ++iter) { if ( !(*iter)->GetSliceRotationLocked() ) { //// Map rotation center onto display geometry (will be used as //// pre-rotation vector for compensating a visual shift of the //// rotation center) //BaseRenderer *renderer = (*iter)->GetRenderer(); //DisplayGeometry *displayGeometry = renderer->GetDisplayGeometry(); //Point2D point2DWorld, point2DDisplayPre, point2DDisplayPost; //displayGeometry->Map( m_CenterOfRotation, point2DWorld ); //displayGeometry->WorldToDisplay( point2DWorld, point2DDisplayPre ); - // Retrieve the TimeSlicedGeometry of this SliceNavigationController - const Geometry3D* geometry3D = (*iter)->GetCreatedWorldGeometry(); - const TimeSlicedGeometry* timeSlicedGeometry = - dynamic_cast(geometry3D); - if (!timeSlicedGeometry) continue; + // Retrieve the TimeGeometry of this SliceNavigationController + TimeGeometry* timeGeometry = (*iter)->GetCreatedWorldGeometry(); + if (!timeGeometry) continue; // Execute the new rotation - const_cast(timeSlicedGeometry) - ->ExecuteOperation(&op2); + timeGeometry->ExecuteOperation(&op2); //// After rotation: map rotation center onto new display geometry... //displayGeometry->Map( m_CenterOfRotation, point2DWorld ); //displayGeometry->WorldToDisplay( point2DWorld, point2DDisplayPost ); //Vector2D vector2DDisplayDiff = point2DDisplayPost - point2DDisplayPre; //// And use the difference between pre- and post-rotation vectors to //// compensate for display geometry shift: //Vector2D origin = displayGeometry->GetOriginInMM(); //displayGeometry->MoveBy( vector2DDisplayDiff ); // Notify listeners (*iter)->SendCreatedWorldGeometryUpdate(); } } m_PreviousRotationAxis = rotationAxis; m_PreviousRotationAngle = rotationAngle; RenderingManager::GetInstance()->RequestUpdateAll(); this->InvokeEvent( SliceRotationEvent() ); // notify listeners ok = true; break; } case AcCHECKPOINT: { // Decide between moving and rotation: if we're close to the crossing // point of the planes, moving mode is entered, otherwise // rotation/swivel mode const DisplayPositionEvent *posEvent = dynamic_cast(stateEvent->GetEvent()); BaseRenderer *renderer = stateEvent->GetEvent()->GetSender(); if ( !posEvent || !renderer ) { break; } const Point3D &cursor = posEvent->GetWorldPosition(); m_SNCsToBeRotated.clear(); const PlaneGeometry *clickedGeometry( NULL ); const PlaneGeometry *otherGeometry1( NULL ); const PlaneGeometry *otherGeometry2( NULL ); SNCVector::iterator iter; for ( iter = m_RelevantSNCs.begin(); iter != m_RelevantSNCs.end(); ++iter ) { //unsigned int slice = (*iter)->GetSlice()->GetPos(); //unsigned int time = (*iter)->GetTime()->GetPos(); const PlaneGeometry *planeGeometry = (*iter)->GetCurrentPlaneGeometry(); if ( !planeGeometry ) continue; if ( *iter == renderer->GetSliceNavigationController() ) { clickedGeometry = planeGeometry; m_SNCsToBeRotated.push_back(*iter); } else { if ( otherGeometry1 == NULL ) { otherGeometry1 = planeGeometry; } else { otherGeometry2 = planeGeometry; } if ( m_LinkPlanes ) { // If planes are linked, apply rotation to all planes m_SNCsToBeRotated.push_back(*iter); } } } std::auto_ptr newStateEvent; mitk::Line3D line; mitk::Point3D point; if ( (clickedGeometry != NULL) && (otherGeometry1 != NULL) && (otherGeometry2 != NULL) && clickedGeometry->IntersectionLine( otherGeometry1, line ) && otherGeometry2->IntersectionPoint( line, point )) { m_CenterOfRotation = point; if ( m_CenterOfRotation.EuclideanDistanceTo( cursor ) < ThresholdDistancePixels ) { newStateEvent.reset(new StateEvent(EIDNO, stateEvent->GetEvent())); } else { m_ReferenceCursor = posEvent->GetDisplayPosition(); // Get main axes of rotation plane and store it for rotation step m_RotationPlaneNormal = clickedGeometry->GetNormal(); ScalarType xVector[] = { 1.0, 0.0, 0.0 }; ScalarType yVector[] = { 0.0, 1.0, 0.0 }; clickedGeometry->Geometry3D::IndexToWorld( Vector3D( xVector), m_RotationPlaneXVector ); clickedGeometry->Geometry3D::IndexToWorld( Vector3D( yVector), m_RotationPlaneYVector ); m_RotationPlaneNormal.Normalize(); m_RotationPlaneXVector.Normalize(); m_RotationPlaneYVector.Normalize(); m_PreviousRotationAxis.Fill( 0.0 ); m_PreviousRotationAxis[2] = 1.0; m_PreviousRotationAngle = 0.0; newStateEvent.reset(new StateEvent(EIDYES, stateEvent->GetEvent())); } } else { newStateEvent.reset(new StateEvent(EIDNO, stateEvent->GetEvent())); } this->HandleEvent( newStateEvent.get() ); ok = true; break; } case AcROTATESTART: { this->InvokeEvent( SliceRotationEvent() ); // notify listeners break; } case AcROTATEEND: { this->InvokeEvent( SliceRotationEvent() ); // notify listeners break; } default: { break; } } return ok; } } // namespace diff --git a/Core/Code/DataManagement/mitkDataStorage.cpp b/Core/Code/DataManagement/mitkDataStorage.cpp index 920a2f8cf4..43a8a0c1b9 100644 --- a/Core/Code/DataManagement/mitkDataStorage.cpp +++ b/Core/Code/DataManagement/mitkDataStorage.cpp @@ -1,498 +1,498 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkDataStorage.h" #include "mitkDataNode.h" #include "mitkProperties.h" #include "mitkNodePredicateBase.h" #include "mitkNodePredicateProperty.h" #include "mitkGroupTagProperty.h" #include "itkMutexLockHolder.h" #include "itkCommand.h" mitk::DataStorage::DataStorage() : itk::Object() , m_BlockNodeModifiedEvents(false) { } mitk::DataStorage::~DataStorage() { ///// we can not call GetAll() in destructor, because it is implemented in a subclass //SetOfObjects::ConstPointer all = this->GetAll(); //for (SetOfObjects::ConstIterator it = all->Begin(); it != all->End(); ++it) // this->RemoveListeners(it->Value()); //m_NodeModifiedObserverTags.clear(); //m_NodeDeleteObserverTags.clear(); } void mitk::DataStorage::Add(mitk::DataNode* node, mitk::DataNode* parent) { mitk::DataStorage::SetOfObjects::Pointer parents = mitk::DataStorage::SetOfObjects::New(); parents->InsertElement(0, parent); this->Add(node, parents); } void mitk::DataStorage::Remove(const mitk::DataStorage::SetOfObjects* nodes) { if (nodes == NULL) return; for (mitk::DataStorage::SetOfObjects::ConstIterator it = nodes->Begin(); it != nodes->End(); it++) this->Remove(it.Value()); } mitk::DataStorage::SetOfObjects::ConstPointer mitk::DataStorage::GetSubset(const NodePredicateBase* condition) const { mitk::DataStorage::SetOfObjects::ConstPointer result = this->FilterSetOfObjects(this->GetAll(), condition); return result; } mitk::DataNode* mitk::DataStorage::GetNamedNode(const char* name) const { if (name == NULL) return NULL; mitk::StringProperty::Pointer s(mitk::StringProperty::New(name)); mitk::NodePredicateProperty::Pointer p = mitk::NodePredicateProperty::New("name", s); mitk::DataStorage::SetOfObjects::ConstPointer rs = this->GetSubset(p); if (rs->Size() >= 1) return rs->GetElement(0); else return NULL; } mitk::DataNode* mitk::DataStorage::GetNode(const NodePredicateBase* condition) const { if (condition == NULL) return NULL; mitk::DataStorage::SetOfObjects::ConstPointer rs = this->GetSubset(condition); if (rs->Size() >= 1) return rs->GetElement(0); else return NULL; } mitk::DataNode* mitk::DataStorage::GetNamedDerivedNode(const char* name, const mitk::DataNode* sourceNode, bool onlyDirectDerivations) const { if (name == NULL) return NULL; mitk::StringProperty::Pointer s(mitk::StringProperty::New(name)); mitk::NodePredicateProperty::Pointer p = mitk::NodePredicateProperty::New("name", s); mitk::DataStorage::SetOfObjects::ConstPointer rs = this->GetDerivations(sourceNode, p, onlyDirectDerivations); if (rs->Size() >= 1) return rs->GetElement(0); else return NULL; } void mitk::DataStorage::PrintSelf(std::ostream& os, itk::Indent indent) const { //Superclass::PrintSelf(os, indent); mitk::DataStorage::SetOfObjects::ConstPointer all = this->GetAll(); os << indent << "DataStorage " << this << " is managing " << all->Size() << " objects. List of objects:" << std::endl; for (mitk::DataStorage::SetOfObjects::ConstIterator allIt = all->Begin(); allIt != all->End(); allIt++) { std::string name; allIt.Value()->GetName(name); std::string datatype; if (allIt.Value()->GetData() != NULL) datatype = allIt.Value()->GetData()->GetNameOfClass(); os << indent << " " << allIt.Value().GetPointer() << "<" << datatype << ">: " << name << std::endl; mitk::DataStorage::SetOfObjects::ConstPointer parents = this->GetSources(allIt.Value()); if (parents->Size() > 0) { os << indent << " Direct sources: "; for (mitk::DataStorage::SetOfObjects::ConstIterator parentIt = parents->Begin(); parentIt != parents->End(); parentIt++) os << parentIt.Value().GetPointer() << ", "; os << std::endl; } mitk::DataStorage::SetOfObjects::ConstPointer derivations = this->GetDerivations(allIt.Value()); if (derivations->Size() > 0) { os << indent << " Direct derivations: "; for (mitk::DataStorage::SetOfObjects::ConstIterator derivationIt = derivations->Begin(); derivationIt != derivations->End(); derivationIt++) os << derivationIt.Value().GetPointer() << ", "; os << std::endl; } } os << std::endl; } mitk::DataStorage::SetOfObjects::ConstPointer mitk::DataStorage::FilterSetOfObjects(const SetOfObjects* set, const NodePredicateBase* condition) const { if (set == NULL) return NULL; mitk::DataStorage::SetOfObjects::Pointer result = mitk::DataStorage::SetOfObjects::New(); for (mitk::DataStorage::SetOfObjects::ConstIterator it = set->Begin(); it != set->End(); it++) if (condition == NULL || condition->CheckNode(it.Value()) == true) //alway copy the set, otherwise the iterator in mitk::DataStorage::Remove() will crash result->InsertElement(result->Size(), it.Value()); return mitk::DataStorage::SetOfObjects::ConstPointer(result); } const mitk::DataNode::GroupTagList mitk::DataStorage::GetGroupTags() const { DataNode::GroupTagList result; SetOfObjects::ConstPointer all = this->GetAll(); if (all.IsNull()) return result; for (mitk::DataStorage::SetOfObjects::ConstIterator nodeIt = all->Begin(); nodeIt != all->End(); nodeIt++) // for each node { mitk::PropertyList* pl = nodeIt.Value()->GetPropertyList(); for (mitk::PropertyList::PropertyMap::const_iterator propIt = pl->GetMap()->begin(); propIt != pl->GetMap()->end(); propIt++) if (dynamic_cast(propIt->second.GetPointer()) != NULL) result.insert(propIt->first); } return result; } void mitk::DataStorage::EmitAddNodeEvent(const mitk::DataNode* node) { AddNodeEvent.Send(node); } void mitk::DataStorage::EmitRemoveNodeEvent(const mitk::DataNode* node) { RemoveNodeEvent.Send(node); } void mitk::DataStorage::OnNodeModifiedOrDeleted( const itk::Object *caller, const itk::EventObject &event ) { if(m_BlockNodeModifiedEvents) return; const mitk::DataNode* _Node = dynamic_cast(caller); if(_Node) { const itk::ModifiedEvent* modEvent = dynamic_cast(&event); if(modEvent) ChangedNodeEvent.Send(_Node); else DeleteNodeEvent.Send(_Node); } } void mitk::DataStorage::AddListeners( const mitk::DataNode* _Node ) { itk::MutexLockHolder locked(m_MutexOne); // node must not be 0 and must not be yet registered mitk::DataNode* NonConstNode = const_cast(_Node); if(_Node && m_NodeModifiedObserverTags .find(NonConstNode) == m_NodeModifiedObserverTags.end()) { itk::MemberCommand::Pointer nodeModifiedCommand = itk::MemberCommand::New(); nodeModifiedCommand->SetCallbackFunction(this , &mitk::DataStorage::OnNodeModifiedOrDeleted); m_NodeModifiedObserverTags[NonConstNode] = NonConstNode->AddObserver(itk::ModifiedEvent(), nodeModifiedCommand); // add itk delete listener on datastorage itk::MemberCommand::Pointer deleteCommand = itk::MemberCommand::New(); deleteCommand->SetCallbackFunction(this, &mitk::DataStorage::OnNodeModifiedOrDeleted); // add observer m_NodeDeleteObserverTags[NonConstNode] = NonConstNode->AddObserver(itk::DeleteEvent(), deleteCommand); } } void mitk::DataStorage::RemoveListeners( const mitk::DataNode* _Node ) { itk::MutexLockHolder locked(m_MutexOne) ; // node must not be 0 and must be registered mitk::DataNode* NonConstNode = const_cast(_Node); if(_Node && m_NodeModifiedObserverTags .find(NonConstNode) != m_NodeModifiedObserverTags.end()) { // const cast is bad! but sometimes it is necessary. removing an observer does not really // touch the internal state NonConstNode->RemoveObserver(m_NodeModifiedObserverTags .find(NonConstNode)->second); NonConstNode->RemoveObserver(m_NodeDeleteObserverTags .find(NonConstNode)->second); m_NodeModifiedObserverTags.erase(NonConstNode); m_NodeDeleteObserverTags.erase(NonConstNode); } } -mitk::TimeSlicedGeometry::Pointer mitk::DataStorage::ComputeBoundingGeometry3D( const SetOfObjects* input, const char* boolPropertyKey, mitk::BaseRenderer* renderer, const char* boolPropertyKey2) +mitk::TimeGeometry::Pointer mitk::DataStorage::ComputeBoundingGeometry3D( const SetOfObjects* input, const char* boolPropertyKey, mitk::BaseRenderer* renderer, const char* boolPropertyKey2) { if (input == NULL) throw std::invalid_argument("DataStorage: input is invalid"); BoundingBox::PointsContainer::Pointer pointscontainer=BoundingBox::PointsContainer::New(); BoundingBox::PointIdentifier pointid=0; Point3D point; Vector3D minSpacing; minSpacing.Fill(ScalarTypeNumericTraits::max()); ScalarType stmin, stmax; stmin= ScalarTypeNumericTraits::NonpositiveMin(); stmax= ScalarTypeNumericTraits::max(); ScalarType minimalIntervallSize = stmax; ScalarType minimalTime = stmax; ScalarType maximalTime = 0; // Needed for check of zero bounding boxes mitk::ScalarType nullpoint[]={0,0,0,0,0,0}; BoundingBox::BoundsArrayType itkBoundsZero(nullpoint); for (SetOfObjects::ConstIterator it = input->Begin(); it != input->End(); ++it) { DataNode::Pointer node = it->Value(); if((node.IsNotNull()) && (node->GetData() != NULL) && (node->GetData()->IsEmpty()==false) && node->IsOn(boolPropertyKey, renderer) && node->IsOn(boolPropertyKey2, renderer) ) { const TimeGeometry* timeGeometry = node->GetData()->GetUpdatedTimeGeometry(); if (timeGeometry != NULL ) { // bounding box (only if non-zero) BoundingBox::BoundsArrayType itkBounds = timeGeometry->GetBoundingBoxInWorld()->GetBounds(); if (itkBounds == itkBoundsZero) { continue; } unsigned char i; for(i=0; i<8; ++i) { point = timeGeometry->GetCornerPointInWorld(i); if(point[0]*point[0]+point[1]*point[1]+point[2]*point[2] < large) pointscontainer->InsertElement( pointid++, point); else { itkGenericOutputMacro( << "Unrealistically distant corner point encountered. Ignored. Node: " << node ); } } try { // time bounds // iterate over all time steps // Attention: Objects with zero bounding box are not respected in time bound calculation for (TimeStepType i=0; iGetNumberOfTimeSteps(); i++) { Vector3D spacing = node->GetData()->GetGeometry(i)->GetSpacing(); for (int axis = 0; axis < 3; ++ axis) { if (spacing[axis] < minSpacing[axis]) minSpacing[axis] = spacing[axis]; } const TimeBounds & curTimeBounds = node->GetData()->GetGeometry(i)->GetTimeBounds(); // get the minimal time of all objects in the DataStorage if ((curTimeBounds[0]stmin)) { minimalTime=curTimeBounds[0]; } // get the maximal time of all objects in the DataStorage if ((curTimeBounds[1]>maximalTime)&&(curTimeBounds[1]SetPoints(pointscontainer); result->ComputeBoundingBox(); // minimal time bounds of a single time step for all geometries TimeBounds minTimeBounds; minTimeBounds[0] = 0; minTimeBounds[1] = 1; // compute the number of time steps unsigned int numberOfTimeSteps = 1; if (maximalTime!=0) // make sure that there is at least one time sliced geometry in the data storage { minTimeBounds[0] = minimalTime; minTimeBounds[1] = minimalTime + minimalIntervallSize; numberOfTimeSteps = static_cast((maximalTime-minimalTime)/minimalIntervallSize); } - TimeSlicedGeometry::Pointer timeSlicedGeometry = NULL; + TimeGeometry::Pointer timeGeometry = NULL; if ( result->GetPoints()->Size()>0 ) { // Initialize a geometry of a single time step Geometry3D::Pointer geometry = Geometry3D::New(); geometry->Initialize(); // correct bounding-box (is now in mm, should be in index-coordinates) // according to spacing BoundingBox::BoundsArrayType bounds = result->GetBounds(); int i; for(i = 0; i < 6; ++i) { bounds[i] /= minSpacing[i/2]; } geometry->SetBounds(bounds); geometry->SetSpacing(minSpacing); geometry->SetTimeBounds(minTimeBounds); // Initialize the time sliced geometry - timeSlicedGeometry = TimeSlicedGeometry::New(); - timeSlicedGeometry->InitializeEvenlyTimed(geometry,numberOfTimeSteps); + timeGeometry = ProportionalTimeGeometry::New(); + dynamic_cast(timeGeometry.GetPointer())->Initialize(geometry,numberOfTimeSteps); } - return timeSlicedGeometry; + return timeGeometry; } -mitk::TimeSlicedGeometry::Pointer mitk::DataStorage::ComputeBoundingGeometry3D( const char* boolPropertyKey, mitk::BaseRenderer* renderer, const char* boolPropertyKey2) +mitk::TimeGeometry::Pointer mitk::DataStorage::ComputeBoundingGeometry3D( const char* boolPropertyKey, mitk::BaseRenderer* renderer, const char* boolPropertyKey2) { return this->ComputeBoundingGeometry3D(this->GetAll(), boolPropertyKey, renderer, boolPropertyKey2); } -mitk::TimeSlicedGeometry::Pointer mitk::DataStorage::ComputeVisibleBoundingGeometry3D( mitk::BaseRenderer* renderer, const char* boolPropertyKey ) +mitk::TimeGeometry::Pointer mitk::DataStorage::ComputeVisibleBoundingGeometry3D( mitk::BaseRenderer* renderer, const char* boolPropertyKey ) { return ComputeBoundingGeometry3D( "visible", renderer, boolPropertyKey ); } mitk::BoundingBox::Pointer mitk::DataStorage::ComputeBoundingBox( const char* boolPropertyKey, mitk::BaseRenderer* renderer, const char* boolPropertyKey2) { BoundingBox::PointsContainer::Pointer pointscontainer=BoundingBox::PointsContainer::New(); BoundingBox::PointIdentifier pointid=0; Point3D point; // Needed for check of zero bounding boxes mitk::ScalarType nullpoint[]={0,0,0,0,0,0}; BoundingBox::BoundsArrayType itkBoundsZero(nullpoint); SetOfObjects::ConstPointer all = this->GetAll(); for (SetOfObjects::ConstIterator it = all->Begin(); it != all->End(); ++it) { DataNode::Pointer node = it->Value(); if((node.IsNotNull()) && (node->GetData() != NULL) && (node->GetData()->IsEmpty()==false) && node->IsOn(boolPropertyKey, renderer) && node->IsOn(boolPropertyKey2, renderer) ) { const TimeGeometry* geometry = node->GetData()->GetUpdatedTimeGeometry(); if (geometry != NULL ) { // bounding box (only if non-zero) BoundingBox::BoundsArrayType itkBounds = geometry->GetBoundingBoxInWorld()->GetBounds(); if (itkBounds == itkBoundsZero) { continue; } unsigned char i; for(i=0; i<8; ++i) { point = geometry->GetCornerPointInWorld(i); if(point[0]*point[0]+point[1]*point[1]+point[2]*point[2] < large) pointscontainer->InsertElement( pointid++, point); else { itkGenericOutputMacro( << "Unrealistically distant corner point encountered. Ignored. Node: " << node ); } } } } } BoundingBox::Pointer result = BoundingBox::New(); result->SetPoints(pointscontainer); result->ComputeBoundingBox(); return result; } mitk::TimeBounds mitk::DataStorage::ComputeTimeBounds( const char* boolPropertyKey, mitk::BaseRenderer* renderer, const char* boolPropertyKey2) { TimeBounds timeBounds; ScalarType stmin, stmax, cur; stmin= ScalarTypeNumericTraits::NonpositiveMin(); stmax= ScalarTypeNumericTraits::max(); timeBounds[0]=stmax; timeBounds[1]=stmin; SetOfObjects::ConstPointer all = this->GetAll(); for (SetOfObjects::ConstIterator it = all->Begin(); it != all->End(); ++it) { DataNode::Pointer node = it->Value(); if((node.IsNotNull()) && (node->GetData() != NULL) && (node->GetData()->IsEmpty()==false) && node->IsOn(boolPropertyKey, renderer) && node->IsOn(boolPropertyKey2, renderer) ) { const TimeGeometry* geometry = node->GetData()->GetUpdatedTimeGeometry(); if (geometry != NULL ) { const TimeBounds & curTimeBounds = geometry->GetTimeBounds(); cur=curTimeBounds[0]; //is it after -infinity, but before everything else that we found until now? if((cur > stmin) && (cur < timeBounds[0])) timeBounds[0] = cur; cur=curTimeBounds[1]; //is it before infinity, but after everything else that we found until now? if((cur < stmax) && (cur > timeBounds[1])) timeBounds[1] = cur; } } } if(!(timeBounds[0] < stmax)) { timeBounds[0] = stmin; timeBounds[1] = stmax; } return timeBounds; } diff --git a/Core/Code/DataManagement/mitkDataStorage.h b/Core/Code/DataManagement/mitkDataStorage.h index fc61b3c54e..7143612c28 100644 --- a/Core/Code/DataManagement/mitkDataStorage.h +++ b/Core/Code/DataManagement/mitkDataStorage.h @@ -1,394 +1,394 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #ifndef MITKDATASTORAGE_H_HEADER_INCLUDED_ #define MITKDATASTORAGE_H_HEADER_INCLUDED_ #include "itkObject.h" #include #include "mitkMessage.h" #include "itkVectorContainer.h" #include "mitkDataNode.h" #include "mitkGeometry3D.h" #include "itkSimpleFastMutexLock.h" #include namespace mitk { class NodePredicateBase; class DataNode; class BaseRenderer; //##Documentation //## @brief Data management class that handles 'was created by' relations //## //## The DataStorage provides data storage and management functionality. //## It handles a 'was created by' relation by associating each data object with a //## set of source objects, that this object was created from. //## Thus, nodes are stored in a noncyclical directed graph data structure. //## If a new node is added to the DataStorage, AddNodeEvent is emitted. //## If a node is removed, RemoveNodeEvent is emitted. //## //## //## \ingroup DataStorage class MITK_CORE_EXPORT DataStorage : public itk::Object { public: mitkClassMacro(DataStorage, itk::Object); //##Documentation //## @brief A Container of objects that is used as a result set of GetSubset() query operations (Set of SmartPointers to DataNodes). typedef itk::VectorContainer SetOfObjects; //##Documentation //## @brief Adds a DataNode containing a data object to its internal storage //## //## This Method adds a new data object to the DataStorage. The new object is //## passed in the first parameter. The second parameter is a set //## of source objects, that were used to create this object. The new object will have //## a 'was created from' relation to its source objects. //## the addition of a new object will fire the notification mechanism. //## If the node parameter is NULL or if the DataNode has already been added, //## an exception will be thrown. virtual void Add(mitk::DataNode* node, const mitk::DataStorage::SetOfObjects* parents = NULL) = 0; //##Documentation //## @brief Convenience method to add a node that has one parent //## void Add(mitk::DataNode* node, mitk::DataNode* parent); //##Documentation //## @brief Removes node from the DataStorage //## virtual void Remove(const mitk::DataNode* node) = 0; //##Documentation //## @brief Checks if a node exists in the DataStorage //## virtual bool Exists(const mitk::DataNode* node) const = 0; //##Documentation //## @brief Removes a set of nodes from the DataStorage //## void Remove(const mitk::DataStorage::SetOfObjects* nodes); //##Documentation //## @brief returns a set of data objects that meet the given condition(s) //## //## GetSubset returns a set of objects with a specific data type that meet the condition(s) //## specified in the condition parameter. Conditions can be //## - data type of the data object //## - is source object of specific object (e.g. all source objects of node x) //## - has property with specific value (e.g. OrganType is Liver) //## - negation of any condition //## - conjunction of a set of conditions //## - disjunction of a set of conditions //## Conditions are implemented as predicates using the Composite Design Pattern //## (see definition of NodePredicateBase for details). //## The method returns a set of SmartPointers to the DataNodes that fulfill the //## conditions. A set of all objects can be retrieved with the GetAll() method; SetOfObjects::ConstPointer GetSubset(const NodePredicateBase* condition) const; //##Documentation //## @brief returns a set of source objects for a given node that meet the given condition(s). //## virtual SetOfObjects::ConstPointer GetSources(const mitk::DataNode* node, const NodePredicateBase* condition = NULL, bool onlyDirectSources = true) const = 0; //##Documentation //## @brief returns a set of derived objects for a given node. //## //## GetDerivations() returns a set of objects that are derived from the DataNode node. //## This means, that node was used to create the returned objects. If the parameter //## onlyDirectDerivations is set to true (default value), only objects that directly have //## node as one of their source objects will be returned. Otherwise, objects that are //## derived from derivations of node are returned too. //## The derived objects can be filtered with a predicate object as described in the GetSubset() //## method by providing a predicate as the condition parameter. virtual SetOfObjects::ConstPointer GetDerivations(const mitk::DataNode* node, const NodePredicateBase* condition = NULL, bool onlyDirectDerivations = true) const = 0; //##Documentation //## @brief returns a set of all data objects that are stored in the data storage //## virtual SetOfObjects::ConstPointer GetAll() const = 0; //##Documentation //## @brief Convenience method to get the first node that matches the predicate condition //## mitk::DataNode* GetNode(const NodePredicateBase* condition = NULL) const; //##Documentation //## @brief Convenience method to get the first node with a given name //## mitk::DataNode* GetNamedNode(const char* name) const; //##Documentation //## @brief Convenience method to get the first node with a given name //## mitk::DataNode* GetNamedNode(const std::string name) const { return this->GetNamedNode(name.c_str()); } //##Documentation //## @brief Convenience method to get the first node with a given name that is derived from sourceNode //## mitk::DataNode* GetNamedDerivedNode(const char* name, const mitk::DataNode* sourceNode, bool onlyDirectDerivations = true) const; //##Documentation //## @brief Convenience method to get the first data object of a given data type with a given name //## template DataType* GetNamedObject(const char* name) const { if (name == NULL) return NULL; mitk::DataNode* n = this->GetNamedNode(name); if (n == NULL) return NULL; else return dynamic_cast(n->GetData()); } //##Documentation //## @brief Convenience method to get the first data object of a given data type with a given name //## template DataType* GetNamedObject(const std::string name) const { return this->GetNamedObject(name.c_str()); } //##Documentation //## @brief Convenience method to get the first data object of a given data type with a given name that is derived from a specific node //## template DataType* GetNamedDerivedObject(const char* name, const mitk::DataNode* sourceNode, bool onlyDirectDerivations = true) const { if (name == NULL) return NULL; mitk::DataNode* n = this->GetNamedDerivedNode(name, sourceNode, onlyDirectDerivations); if (n == NULL) return NULL; else return dynamic_cast(n->GetData()); } //##Documentation //## @brief Returns a list of used grouptags //## const DataNode::GroupTagList GetGroupTags() const; /*ITK Mutex */ mutable itk::SimpleFastMutexLock m_MutexOne; /* Public Events */ typedef Message1 DataStorageEvent; //##Documentation //## @brief AddEvent is emitted whenever a new node has been added to the DataStorage. //## //## Observers should register to this event by calling myDataStorage->AddNodeEvent.AddListener(myObject, MyObject::MyMethod). //## After registering, myObject->MyMethod() will be called every time a new node has been added to the DataStorage. //## Observers should unregister by calling myDataStorage->AddNodeEvent.RemoveListener(myObject, MyObject::MyMethod). //## Note: AddEvents are _not_ emitted if a node is added to DataStorage by adding it to the the underlying DataTree! // member variable is not needed to be locked in multi threaded scenarios since the DataStorageEvent is a typedef for // a Message1 object which is thread safe DataStorageEvent AddNodeEvent; //##Documentation //## @brief RemoveEvent is emitted directly before a node is removed from the DataStorage. //## //## Observers should register to this event by calling myDataStorage->RemoveNodeEvent.AddListener(myObject, MyObject::MyMethod). //## After registering, myObject->MyMethod() will be called every time a new node has been added to the DataStorage. //## Observers should unregister by calling myDataStorage->RemoveNodeEvent.RemoveListener(myObject, MyObject::MyMethod). //## Note: RemoveEvents are also emitted if a node was removed from the DataStorage by deleting it from the underlying DataTree // member variable is not needed to be locked in multi threaded scenarios since the DataStorageEvent is a typedef for // a Message1 object which is thread safe DataStorageEvent RemoveNodeEvent; //##Documentation //## @brief ChangedEvent is emitted directly after a node was changed. //## //## Observers should register to this event by calling myDataStorage->ChangedNodeEvent.AddListener(myObject, MyObject::MyMethod). //## After registering, myObject->MyMethod() will be called every time a new node has been changed. //## Observers should unregister by calling myDataStorage->ChangedNodeEvent.RemoveListener(myObject, MyObject::MyMethod). //## Internally the DataStorage listens to itk::ModifiedEvents on the nodes and forwards them //## to the listeners of this event. // member variable is not needed to be locked in multi threaded scenarios since the DataStorageEvent is a typedef for // a Message1 object which is thread safe DataStorageEvent ChangedNodeEvent; //##Documentation //## @brief DeleteNodeEvent is emitted directly before a node is deleted. //## //## Observers should register to this event by calling myDataStorage->DeleteNodeEvent.AddListener(myObject, MyObject::MyMethod). //## After registering, myObject->MyMethod() will be called when a node is deleted. //## Observers should unregister by calling myDataStorage->DeleteNodeEvent.RemoveListener(myObject, MyObject::MyMethod). //## Internally the DataStorage listens to itk::DeleteEvents on the nodes and forwards them //## to the listeners of this event. // member variable is not needed to be locked in multi threaded scenarios since the DataStorageEvent is a typedef for // a Message1 object which is thread safe DataStorageEvent DeleteNodeEvent; //##Documentation //## @brief Compute the axis-parallel bounding geometry of the input objects //## //## Throws std::invalid_argument exception if input is NULL //## @param input set of objects of the DataStorage to be included in the bounding geometry //## @param boolPropertyKey if a BoolProperty with this boolPropertyKey exists for a node (for @a renderer) //## and is set to @a false, the node is ignored for the bounding-box calculation. //## @param renderer see @a boolPropertyKey //## @param boolPropertyKey2 a second condition that is applied additionally to @a boolPropertyKey - mitk::TimeSlicedGeometry::Pointer ComputeBoundingGeometry3D( const SetOfObjects* input, const char* boolPropertyKey = NULL, mitk::BaseRenderer* renderer = NULL, const char* boolPropertyKey2 = NULL); + mitk::TimeGeometry::Pointer ComputeBoundingGeometry3D( const SetOfObjects* input, const char* boolPropertyKey = NULL, mitk::BaseRenderer* renderer = NULL, const char* boolPropertyKey2 = NULL); //##Documentation //## @brief Compute the axis-parallel bounding geometry of the data tree //## (bounding box, minimal spacing of the considered nodes, live-span) //## //## it -> an iterator to a data tree structure //## @param boolPropertyKey if a BoolProperty with this boolPropertyKey exists for a node (for @a renderer) //## and is set to @a false, the node is ignored for the bounding-box calculation. //## @param renderer see @a boolPropertyKey //## @param boolPropertyKey2 a second condition that is applied additionally to @a boolPropertyKey - mitk::TimeSlicedGeometry::Pointer ComputeBoundingGeometry3D( const char* boolPropertyKey = NULL, mitk::BaseRenderer* renderer = NULL, const char* boolPropertyKey2 = NULL); + mitk::TimeGeometry::Pointer ComputeBoundingGeometry3D( const char* boolPropertyKey = NULL, mitk::BaseRenderer* renderer = NULL, const char* boolPropertyKey2 = NULL); //##Documentation //## @brief Compute the axis-parallel bounding geometry of all visible parts of the //## data tree bounding box, minimal spacing of the considered nodes, live-span) //## //## Simply calls ComputeBoundingGeometry3D(it, "visible", renderer, boolPropertyKey). //## it -> an iterator of a data tree structure //## @param renderer the reference to the renderer //## @param boolPropertyKey if a BoolProperty with this boolPropertyKey exists for a node (for @a renderer) //## and is set to @a false, the node is ignored for the bounding-box calculation. - mitk::TimeSlicedGeometry::Pointer ComputeVisibleBoundingGeometry3D( mitk::BaseRenderer* renderer = NULL, const char* boolPropertyKey = NULL); + mitk::TimeGeometry::Pointer ComputeVisibleBoundingGeometry3D( mitk::BaseRenderer* renderer = NULL, const char* boolPropertyKey = NULL); //##Documentation //## @brief Compute the bounding box of data tree structure //## it -> an iterator to a data tree structure //## @param boolPropertyKey if a BoolProperty with this boolPropertyKey exists for a node (for @a renderer) //## and is set to @a false, the node is ignored for the bounding-box calculation. //## @param renderer see @a boolPropertyKey //## @param boolPropertyKey2 a second condition that is applied additionally to @a boolPropertyKey mitk::BoundingBox::Pointer ComputeBoundingBox( const char* boolPropertyKey = NULL, mitk::BaseRenderer* renderer = NULL, const char* boolPropertyKey2 = NULL); //##Documentation //## \brief Compute the bounding box of all visible parts of the data tree structure, for general //## rendering or renderer specific visibility property checking //## //## Simply calls ComputeBoundingBox(it, "visible", renderer, boolPropertyKey). //## it -> an iterator of a data tree structure //## @param renderer the reference to the renderer //## @param boolPropertyKey if a BoolProperty with this boolPropertyKey exists for a node (for @a renderer) //## and is set to @a false, the node is ignored for the bounding-box calculation. mitk::BoundingBox::Pointer ComputeVisibleBoundingBox( mitk::BaseRenderer* renderer = NULL, const char* boolPropertyKey = NULL) { return ComputeBoundingBox( "visible", renderer, boolPropertyKey); } //##Documentation //## @brief Compute the time-bounds of the contents of a data tree structure //## //## The methods returns only [-infinity, +infinity], if all data-objects have an infinite live-span. Otherwise, //## all data-objects with infinite live-span are ignored. //## it -> an iterator to a data tree structure //## @param boolPropertyKey if a BoolProperty with this boolPropertyKey exists for a node (for @a renderer) //## and is set to @a false, the node is ignored for the time-bounds calculation. //## @param renderer see @a boolPropertyKey //## @param boolPropertyKey2 a second condition that is applied additionally to @a boolPropertyKey mitk::TimeBounds ComputeTimeBounds( const char* boolPropertyKey, mitk::BaseRenderer* renderer, const char* boolPropertyKey2); //##Documentation //## @brief Compute the time-bounds of all visible parts of the data tree structure, for general //## rendering or renderer specific visibility property checking //## //## The methods returns only [-infinity, +infinity], if all data-objects have an infinite live-span. Otherwise, //## all data-objects with infinite live-span are ignored. //## Simply calls ComputeTimeBounds(it, "visible", renderer, boolPropertyKey). //## @param it an iterator to a data tree structure //## @param boolPropertyKey if a BoolProperty with this boolPropertyKey exists for a node (for @a renderer) //## and is set to @a false, the node is ignored for the time-bounds calculation. //## @param renderer see @a boolPropertyKey mitk::TimeBounds ComputeTimeBounds( mitk::BaseRenderer* renderer, const char* boolPropertyKey) { return ComputeTimeBounds( "visible", renderer, boolPropertyKey); } protected: //##Documentation //## @brief EmitAddNodeEvent emits the AddNodeEvent //## //## This method should be called by subclasses to emit the AddNodeEvent void EmitAddNodeEvent(const mitk::DataNode* node); //##Documentation //## @brief EmitRemoveNodeEvent emits the RemoveNodeEvent //## //## This method should be called by subclasses to emit the RemoveNodeEvent void EmitRemoveNodeEvent(const mitk::DataNode* node); //##Documentation //## @brief OnNodeModified listens to modified events of DataNodes. //## //## The node is hidden behind the caller parameter, which has to be casted first. //## If the cast succeeds the ChangedNodeEvent is emitted with this node. void OnNodeModifiedOrDeleted( const itk::Object *caller, const itk::EventObject &event ); //##Documentation //## @brief Adds a Modified-Listener to the given Node. void AddListeners(const mitk::DataNode* _Node); //##Documentation //## @brief Removes a Modified-Listener from the given Node. void RemoveListeners(const mitk::DataNode* _Node); //##Documentation //## @brief Saves Modified-Observer Tags for each node in order to remove the event listeners again. std::map m_NodeModifiedObserverTags; //##Documentation //## @brief Saves Delete-Observer Tags for each node in order to remove the event listeners again. std::map m_NodeDeleteObserverTags; //##Documentation //## @brief If this class changes nodes itself, set this to TRUE in order //## to suppress NodeChangedEvent to be emitted. bool m_BlockNodeModifiedEvents; //##Documentation //## @brief Standard Constructor for ::New() instantiation DataStorage(); //##Documentation //## @brief Standard Destructor virtual ~DataStorage(); //##Documentation //## @brief Filters a SetOfObjects by the condition. If no condition is provided, the original set is returned SetOfObjects::ConstPointer FilterSetOfObjects(const SetOfObjects* set, const NodePredicateBase* condition) const; //##Documentation //## @brief Prints the contents of the DataStorage to os. Do not call directly, call ->Print() instead virtual void PrintSelf(std::ostream& os, itk::Indent indent) const; }; } // namespace mitk #endif /* MITKDATASTORAGE_H_HEADER_INCLUDED_ */ diff --git a/Core/Code/DataManagement/mitkImage.cpp b/Core/Code/DataManagement/mitkImage.cpp index fb544eb306..fe8373bbab 100644 --- a/Core/Code/DataManagement/mitkImage.cpp +++ b/Core/Code/DataManagement/mitkImage.cpp @@ -1,1336 +1,1338 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkImage.h" #include "mitkImageStatisticsHolder.h" #include "mitkPixelTypeMultiplex.h" #include #include #include #define FILL_C_ARRAY( _arr, _size, _value) for(unsigned int i=0u; i<_size; i++) \ { _arr[i] = _value; } mitk::Image::Image() : m_Dimension(0), m_Dimensions(NULL), m_ImageDescriptor(NULL), m_OffsetTable(NULL), m_CompleteData(NULL), m_ImageStatistics(NULL) { m_Dimensions = new unsigned int[MAX_IMAGE_DIMENSIONS]; FILL_C_ARRAY( m_Dimensions, MAX_IMAGE_DIMENSIONS, 0u); m_Initialized = false; } mitk::Image::Image(const Image &other) : SlicedData(other), m_Dimension(0), m_Dimensions(NULL), m_ImageDescriptor(NULL), m_OffsetTable(NULL), m_CompleteData(NULL), m_ImageStatistics(NULL) { m_Dimensions = new unsigned int[MAX_IMAGE_DIMENSIONS]; FILL_C_ARRAY( m_Dimensions, MAX_IMAGE_DIMENSIONS, 0u); this->Initialize( other.GetPixelType(), other.GetDimension(), other.GetDimensions()); //Since the above called "Initialize" method doesn't take the geometry into account we need to set it //here manually this->SetTimeGeometry(other.GetTimeGeometry()->Clone().GetPointer()); if (this->GetDimension() > 3) { const unsigned int time_steps = this->GetDimension(3); for (unsigned int i = 0u; i < time_steps; ++i) { ImageDataItemPointer volume = const_cast(other).GetVolumeData(i); this->SetVolume(volume->GetData(), i); } } else { ImageDataItemPointer volume = const_cast(other).GetVolumeData(0); this->SetVolume(volume->GetData(), 0); } } mitk::Image::~Image() { Clear(); m_ReferenceCountLock.Lock(); m_ReferenceCount = 3; m_ReferenceCountLock.Unlock(); m_ReferenceCountLock.Lock(); m_ReferenceCount = 0; m_ReferenceCountLock.Unlock(); if(m_OffsetTable != NULL) delete [] m_OffsetTable; if(m_ImageStatistics != NULL) delete m_ImageStatistics; } const mitk::PixelType mitk::Image::GetPixelType(int n) const { return this->m_ImageDescriptor->GetChannelTypeById(n); } unsigned int mitk::Image::GetDimension() const { return m_Dimension; } unsigned int mitk::Image::GetDimension(int i) const { if((i>=0) && (i<(int)m_Dimension)) return m_Dimensions[i]; return 1; } void* mitk::Image::GetData() { if(m_Initialized==false) { if(GetSource().IsNull()) return NULL; if(GetSource()->Updating()==false) GetSource()->UpdateOutputInformation(); } m_CompleteData=GetChannelData(); // update channel's data // if data was not available at creation point, the m_Data of channel descriptor is NULL // if data present, it won't be overwritten m_ImageDescriptor->GetChannelDescriptor(0).SetData(m_CompleteData->GetData()); return m_CompleteData->GetData(); } template void AccessPixel( const mitk::PixelType ptype, void* data, const unsigned int offset, double& value ) { value = 0.0; if( data == NULL ) return; if(ptype.GetBpe() != 24) { value = (double) (((T*) data)[ offset ]); } else { const unsigned int rgboffset = 3 * offset; double returnvalue = (((T*) data)[rgboffset ]); returnvalue += (((T*) data)[rgboffset + 1]); returnvalue += (((T*) data)[rgboffset + 2]); value = returnvalue; } } double mitk::Image::GetPixelValueByIndex(const mitk::Index3D &position, unsigned int timestep) { double value = 0; if (this->GetTimeSteps() < timestep) { timestep = this->GetTimeSteps(); } value = 0.0; const unsigned int* imageDims = this->m_ImageDescriptor->GetDimensions(); const mitk::PixelType ptype = this->m_ImageDescriptor->GetChannelTypeById(0); // Comparison ?>=0 not needed since all position[i] and timestep are unsigned int // (position[0]>=0 && position[1] >=0 && position[2]>=0 && timestep>=0) // bug-11978 : we still need to catch index with negative values if ( position[0] < 0 || position[1] < 0 || position[2] < 0 ) { MITK_WARN << "Given position ("<< position << ") is out of image range, returning 0." ; } // check if the given position is inside the index range of the image, the 3rd dimension needs to be compared only if the dimension is not 0 else if ( (unsigned int)position[0] >= imageDims[0] || (unsigned int)position[1] >= imageDims[1] || ( imageDims[2] && (unsigned int)position[2] >= imageDims[2] )) { MITK_WARN << "Given position ("<< position << ") is out of image range, returning 0." ; } else { const unsigned int offset = position[0] + position[1]*imageDims[0] + position[2]*imageDims[0]*imageDims[1] + timestep*imageDims[0]*imageDims[1]*imageDims[2]; mitkPixelTypeMultiplex3( AccessPixel, ptype, this->GetData(), offset, value ); } return value; } double mitk::Image::GetPixelValueByWorldCoordinate(const mitk::Point3D& position, unsigned int timestep) { double value = 0.0; if (this->GetTimeSteps() < timestep) { timestep = this->GetTimeSteps(); } Index3D itkIndex; this->GetGeometry()->WorldToIndex(position, itkIndex); value = this->GetPixelValueByIndex( itkIndex, timestep); return value; } mitk::ImageVtkAccessor* mitk::Image::GetVtkImageData(int t, int n) { if(m_Initialized==false) { if(GetSource().IsNull()) return NULL; if(GetSource()->Updating()==false) GetSource()->UpdateOutputInformation(); } ImageDataItemPointer volume=GetVolumeData(t, n); if(volume.GetPointer()==NULL || volume->GetVtkImageData(this) == NULL) return NULL; float *fspacing = const_cast(GetSlicedGeometry(t)->GetFloatSpacing()); double dspacing[3] = {fspacing[0],fspacing[1],fspacing[2]}; volume->GetVtkImageData(this)->SetSpacing( dspacing ); return volume->GetVtkImageData(this); } mitk::Image::ImageDataItemPointer mitk::Image::GetSliceData(int s, int t, int n, void *data, ImportMemoryManagementType importMemoryManagement) { if(IsValidSlice(s,t,n)==false) return NULL; const size_t ptypeSize = this->m_ImageDescriptor->GetChannelTypeById(n).GetSize(); // slice directly available? int pos=GetSliceIndex(s,t,n); if(m_Slices[pos].GetPointer()!=NULL) return m_Slices[pos]; // is slice available as part of a volume that is available? ImageDataItemPointer sl, ch, vol; vol=m_Volumes[GetVolumeIndex(t,n)]; if((vol.GetPointer()!=NULL) && (vol->IsComplete())) { sl=new ImageDataItem(*vol, m_ImageDescriptor, 2, data, importMemoryManagement == ManageMemory, ((size_t) s)*m_OffsetTable[2]*(ptypeSize)); sl->SetComplete(true); return m_Slices[pos]=sl; } // is slice available as part of a channel that is available? ch=m_Channels[n]; if((ch.GetPointer()!=NULL) && (ch->IsComplete())) { sl=new ImageDataItem(*ch, m_ImageDescriptor, 2, data, importMemoryManagement == ManageMemory, (((size_t) s)*m_OffsetTable[2]+((size_t) t)*m_OffsetTable[3])*(ptypeSize)); sl->SetComplete(true); return m_Slices[pos]=sl; } // slice is unavailable. Can we calculate it? if((GetSource().IsNotNull()) && (GetSource()->Updating()==false)) { // ... wir mussen rechnen!!! .... m_RequestedRegion.SetIndex(0, 0); m_RequestedRegion.SetIndex(1, 0); m_RequestedRegion.SetIndex(2, s); m_RequestedRegion.SetIndex(3, t); m_RequestedRegion.SetIndex(4, n); m_RequestedRegion.SetSize(0, m_Dimensions[0]); m_RequestedRegion.SetSize(1, m_Dimensions[1]); m_RequestedRegion.SetSize(2, 1); m_RequestedRegion.SetSize(3, 1); m_RequestedRegion.SetSize(4, 1); m_RequestedRegionInitialized=true; GetSource()->Update(); if(IsSliceSet(s,t,n)) //yes: now we can call ourselves without the risk of a endless loop (see "if" above) return GetSliceData(s,t,n,data,importMemoryManagement); else return NULL; } else { ImageDataItemPointer item = AllocateSliceData(s,t,n,data,importMemoryManagement); item->SetComplete(true); return item; } } mitk::Image::ImageDataItemPointer mitk::Image::GetVolumeData(int t, int n, void *data, ImportMemoryManagementType importMemoryManagement) { if(IsValidVolume(t,n)==false) return NULL; ImageDataItemPointer ch, vol; // volume directly available? int pos=GetVolumeIndex(t,n); vol=m_Volumes[pos]; if((vol.GetPointer()!=NULL) && (vol->IsComplete())) return vol; const size_t ptypeSize = this->m_ImageDescriptor->GetChannelTypeById(n).GetSize(); // is volume available as part of a channel that is available? ch=m_Channels[n]; if((ch.GetPointer()!=NULL) && (ch->IsComplete())) { vol=new ImageDataItem(*ch, m_ImageDescriptor, 3, data, importMemoryManagement == ManageMemory, (((size_t) t)*m_OffsetTable[3])*(ptypeSize)); vol->SetComplete(true); return m_Volumes[pos]=vol; } // let's see if all slices of the volume are set, so that we can (could) combine them to a volume bool complete=true; unsigned int s; for(s=0;sSetComplete(true); } else { mitk::PixelType chPixelType = this->m_ImageDescriptor->GetChannelTypeById(n); vol=m_Volumes[pos]; // ok, let's combine the slices! if(vol.GetPointer()==NULL) vol=new ImageDataItem( chPixelType, 3, m_Dimensions, NULL, true); vol->SetComplete(true); size_t size=m_OffsetTable[2]*(ptypeSize); for(s=0;sGetParent()!=vol) { // copy data of slices in volume size_t offset = ((size_t) s)*size; std::memcpy(static_cast(vol->GetData())+offset, sl->GetData(), size); // FIXME mitkIpPicDescriptor * pic = sl->GetPicDescriptor(); // replace old slice with reference to volume sl=new ImageDataItem(*vol, m_ImageDescriptor, 2, data, importMemoryManagement == ManageMemory, ((size_t) s)*size); sl->SetComplete(true); //mitkIpFuncCopyTags(sl->GetPicDescriptor(), pic); m_Slices[posSl]=sl; } } //if(vol->GetPicDescriptor()->info->tags_head==NULL) // mitkIpFuncCopyTags(vol->GetPicDescriptor(), m_Slices[GetSliceIndex(0,t,n)]->GetPicDescriptor()); } return m_Volumes[pos]=vol; } // volume is unavailable. Can we calculate it? if((GetSource().IsNotNull()) && (GetSource()->Updating()==false)) { // ... wir muessen rechnen!!! .... m_RequestedRegion.SetIndex(0, 0); m_RequestedRegion.SetIndex(1, 0); m_RequestedRegion.SetIndex(2, 0); m_RequestedRegion.SetIndex(3, t); m_RequestedRegion.SetIndex(4, n); m_RequestedRegion.SetSize(0, m_Dimensions[0]); m_RequestedRegion.SetSize(1, m_Dimensions[1]); m_RequestedRegion.SetSize(2, m_Dimensions[2]); m_RequestedRegion.SetSize(3, 1); m_RequestedRegion.SetSize(4, 1); m_RequestedRegionInitialized=true; GetSource()->Update(); if(IsVolumeSet(t,n)) //yes: now we can call ourselves without the risk of a endless loop (see "if" above) return GetVolumeData(t,n,data,importMemoryManagement); else return NULL; } else { ImageDataItemPointer item = AllocateVolumeData(t,n,data,importMemoryManagement); item->SetComplete(true); return item; } } mitk::Image::ImageDataItemPointer mitk::Image::GetChannelData(int n, void *data, ImportMemoryManagementType importMemoryManagement) { if(IsValidChannel(n)==false) return NULL; ImageDataItemPointer ch, vol; ch=m_Channels[n]; if((ch.GetPointer()!=NULL) && (ch->IsComplete())) return ch; // let's see if all volumes are set, so that we can (could) combine them to a channel if(IsChannelSet(n)) { // if there is only one time frame we do not need to combine anything if(m_Dimensions[3]<=1) { vol=GetVolumeData(0,n,data,importMemoryManagement); ch=new ImageDataItem(*vol, m_ImageDescriptor, m_ImageDescriptor->GetNumberOfDimensions(), data, importMemoryManagement == ManageMemory); ch->SetComplete(true); } else { const size_t ptypeSize = this->m_ImageDescriptor->GetChannelTypeById(n).GetSize(); ch=m_Channels[n]; // ok, let's combine the volumes! if(ch.GetPointer()==NULL) ch=new ImageDataItem(this->m_ImageDescriptor, NULL, true); ch->SetComplete(true); size_t size=m_OffsetTable[m_Dimension-1]*(ptypeSize); unsigned int t; ImageDataItemPointerArray::iterator slicesIt = m_Slices.begin()+n*m_Dimensions[2]*m_Dimensions[3]; for(t=0;tGetParent()!=ch) { // copy data of volume in channel size_t offset = ((size_t) t)*m_OffsetTable[3]*(ptypeSize); std::memcpy(static_cast(ch->GetData())+offset, vol->GetData(), size); // REVEIW FIX mitkIpPicDescriptor * pic = vol->GetPicDescriptor(); // replace old volume with reference to channel vol=new ImageDataItem(*ch, m_ImageDescriptor, 3, data, importMemoryManagement == ManageMemory, offset); vol->SetComplete(true); //mitkIpFuncCopyTags(vol->GetPicDescriptor(), pic); m_Volumes[posVol]=vol; // get rid of slices - they may point to old volume ImageDataItemPointer dnull=NULL; for(unsigned int i = 0; i < m_Dimensions[2]; ++i, ++slicesIt) { assert(slicesIt != m_Slices.end()); *slicesIt = dnull; } } } // REVIEW FIX // if(ch->GetPicDescriptor()->info->tags_head==NULL) // mitkIpFuncCopyTags(ch->GetPicDescriptor(), m_Volumes[GetVolumeIndex(0,n)]->GetPicDescriptor()); } return m_Channels[n]=ch; } // channel is unavailable. Can we calculate it? if((GetSource().IsNotNull()) && (GetSource()->Updating()==false)) { // ... wir muessen rechnen!!! .... m_RequestedRegion.SetIndex(0, 0); m_RequestedRegion.SetIndex(1, 0); m_RequestedRegion.SetIndex(2, 0); m_RequestedRegion.SetIndex(3, 0); m_RequestedRegion.SetIndex(4, n); m_RequestedRegion.SetSize(0, m_Dimensions[0]); m_RequestedRegion.SetSize(1, m_Dimensions[1]); m_RequestedRegion.SetSize(2, m_Dimensions[2]); m_RequestedRegion.SetSize(3, m_Dimensions[3]); m_RequestedRegion.SetSize(4, 1); m_RequestedRegionInitialized=true; GetSource()->Update(); // did it work? if(IsChannelSet(n)) //yes: now we can call ourselves without the risk of a endless loop (see "if" above) return GetChannelData(n,data,importMemoryManagement); else return NULL; } else { ImageDataItemPointer item = AllocateChannelData(n,data,importMemoryManagement); item->SetComplete(true); return item; } } bool mitk::Image::IsSliceSet(int s, int t, int n) const { if(IsValidSlice(s,t,n)==false) return false; if(m_Slices[GetSliceIndex(s,t,n)].GetPointer()!=NULL) return true; ImageDataItemPointer ch, vol; vol=m_Volumes[GetVolumeIndex(t,n)]; if((vol.GetPointer()!=NULL) && (vol->IsComplete())) return true; ch=m_Channels[n]; if((ch.GetPointer()!=NULL) && (ch->IsComplete())) return true; return false; } bool mitk::Image::IsVolumeSet(int t, int n) const { if(IsValidVolume(t,n)==false) return false; ImageDataItemPointer ch, vol; // volume directly available? vol=m_Volumes[GetVolumeIndex(t,n)]; if((vol.GetPointer()!=NULL) && (vol->IsComplete())) return true; // is volume available as part of a channel that is available? ch=m_Channels[n]; if((ch.GetPointer()!=NULL) && (ch->IsComplete())) return true; // let's see if all slices of the volume are set, so that we can (could) combine them to a volume unsigned int s; for(s=0;sIsComplete())) return true; // let's see if all volumes are set, so that we can (could) combine them to a channel unsigned int t; for(t=0;t(data), s, t, n, CopyMemory); } bool mitk::Image::SetVolume(const void *data, int t, int n) { // const_cast is no risk for ImportMemoryManagementType == CopyMemory return SetImportVolume(const_cast(data), t, n, CopyMemory); } bool mitk::Image::SetChannel(const void *data, int n) { // const_cast is no risk for ImportMemoryManagementType == CopyMemory return SetImportChannel(const_cast(data), n, CopyMemory); } bool mitk::Image::SetImportSlice(void *data, int s, int t, int n, ImportMemoryManagementType importMemoryManagement) { if(IsValidSlice(s,t,n)==false) return false; ImageDataItemPointer sl; const size_t ptypeSize = this->m_ImageDescriptor->GetChannelTypeById(n).GetSize(); if(IsSliceSet(s,t,n)) { sl=GetSliceData(s,t,n,data,importMemoryManagement); if(sl->GetManageMemory()==false) { sl=AllocateSliceData(s,t,n,data,importMemoryManagement); if(sl.GetPointer()==NULL) return false; } if ( sl->GetData() != data ) std::memcpy(sl->GetData(), data, m_OffsetTable[2]*(ptypeSize)); sl->Modified(); //we have changed the data: call Modified()! Modified(); } else { sl=AllocateSliceData(s,t,n,data,importMemoryManagement); if(sl.GetPointer()==NULL) return false; if ( sl->GetData() != data ) std::memcpy(sl->GetData(), data, m_OffsetTable[2]*(ptypeSize)); //we just added a missing slice, which is not regarded as modification. //Therefore, we do not call Modified()! } return true; } bool mitk::Image::SetImportVolume(void *data, int t, int n, ImportMemoryManagementType importMemoryManagement) { if(IsValidVolume(t,n)==false) return false; const size_t ptypeSize = this->m_ImageDescriptor->GetChannelTypeById(n).GetSize(); ImageDataItemPointer vol; if(IsVolumeSet(t,n)) { vol=GetVolumeData(t,n,data,importMemoryManagement); if(vol->GetManageMemory()==false) { vol=AllocateVolumeData(t,n,data,importMemoryManagement); if(vol.GetPointer()==NULL) return false; } if ( vol->GetData() != data ) std::memcpy(vol->GetData(), data, m_OffsetTable[3]*(ptypeSize)); vol->Modified(); vol->SetComplete(true); //we have changed the data: call Modified()! Modified(); } else { vol=AllocateVolumeData(t,n,data,importMemoryManagement); if(vol.GetPointer()==NULL) return false; if ( vol->GetData() != data ) { std::memcpy(vol->GetData(), data, m_OffsetTable[3]*(ptypeSize)); } vol->SetComplete(true); this->m_ImageDescriptor->GetChannelDescriptor(n).SetData( vol->GetData() ); //we just added a missing Volume, which is not regarded as modification. //Therefore, we do not call Modified()! } return true; } bool mitk::Image::SetImportChannel(void *data, int n, ImportMemoryManagementType importMemoryManagement) { if(IsValidChannel(n)==false) return false; // channel descriptor const size_t ptypeSize = this->m_ImageDescriptor->GetChannelTypeById(n).GetSize(); ImageDataItemPointer ch; if(IsChannelSet(n)) { ch=GetChannelData(n,data,importMemoryManagement); if(ch->GetManageMemory()==false) { ch=AllocateChannelData(n,data,importMemoryManagement); if(ch.GetPointer()==NULL) return false; } if ( ch->GetData() != data ) std::memcpy(ch->GetData(), data, m_OffsetTable[4]*(ptypeSize)); ch->Modified(); ch->SetComplete(true); //we have changed the data: call Modified()! Modified(); } else { ch=AllocateChannelData(n,data,importMemoryManagement); if(ch.GetPointer()==NULL) return false; if ( ch->GetData() != data ) std::memcpy(ch->GetData(), data, m_OffsetTable[4]*(ptypeSize)); ch->SetComplete(true); this->m_ImageDescriptor->GetChannelDescriptor(n).SetData( ch->GetData() ); //we just added a missing Channel, which is not regarded as modification. //Therefore, we do not call Modified()! } return true; } void mitk::Image::Initialize() { ImageDataItemPointerArray::iterator it, end; for( it=m_Slices.begin(), end=m_Slices.end(); it!=end; ++it ) { (*it)=NULL; } for( it=m_Volumes.begin(), end=m_Volumes.end(); it!=end; ++it ) { (*it)=NULL; } for( it=m_Channels.begin(), end=m_Channels.end(); it!=end; ++it ) { (*it)=NULL; } m_CompleteData = NULL; if( m_ImageStatistics == NULL) { m_ImageStatistics = new mitk::ImageStatisticsHolder( this ); } SetRequestedRegionToLargestPossibleRegion(); } void mitk::Image::Initialize(const mitk::ImageDescriptor::Pointer inDesc) { // store the descriptor this->m_ImageDescriptor = inDesc; // initialize image this->Initialize( inDesc->GetChannelDescriptor(0).GetPixelType(), inDesc->GetNumberOfDimensions(), inDesc->GetDimensions(), 1 ); } void mitk::Image::Initialize(const mitk::PixelType& type, unsigned int dimension, const unsigned int *dimensions, unsigned int channels) { Clear(); m_Dimension=dimension; if(!dimensions) itkExceptionMacro(<< "invalid zero dimension image"); unsigned int i; for(i=0;im_ImageDescriptor = mitk::ImageDescriptor::New(); this->m_ImageDescriptor->Initialize( this->m_Dimensions, this->m_Dimension ); for(i=0;i<4;++i) { m_LargestPossibleRegion.SetIndex(i, 0); m_LargestPossibleRegion.SetSize (i, m_Dimensions[i]); } m_LargestPossibleRegion.SetIndex(i, 0); m_LargestPossibleRegion.SetSize(i, channels); if(m_LargestPossibleRegion.GetNumberOfPixels()==0) { delete [] m_Dimensions; m_Dimensions = NULL; return; } for( unsigned int i=0u; im_ImageDescriptor->AddNewChannel( type ); } PlaneGeometry::Pointer planegeometry = PlaneGeometry::New(); planegeometry->InitializeStandardPlane(m_Dimensions[0], m_Dimensions[1]); SlicedGeometry3D::Pointer slicedGeometry = SlicedGeometry3D::New(); slicedGeometry->InitializeEvenlySpaced(planegeometry, m_Dimensions[2]); if(dimension>=4) { TimeBounds timebounds; timebounds[0] = 0.0; timebounds[1] = 1.0; slicedGeometry->SetTimeBounds(timebounds); } - TimeSlicedGeometry::Pointer timeSliceGeometry = TimeSlicedGeometry::New(); - timeSliceGeometry->InitializeEvenlyTimed(slicedGeometry, m_Dimensions[3]); - timeSliceGeometry->ImageGeometryOn(); - - SetGeometry(timeSliceGeometry); + ProportionalTimeGeometry::Pointer timeGeometry = ProportionalTimeGeometry::New(); + timeGeometry->Initialize(slicedGeometry, m_Dimensions[3]); + for (TimeStepType step = 0; step < timeGeometry->GetNumberOfTimeSteps(); ++step) + { + timeGeometry->GetGeometryForTimeStep(step)->ImageGeometryOn(); + } + SetTimeGeometry(timeGeometry); ImageDataItemPointer dnull=NULL; m_Channels.assign(GetNumberOfChannels(), dnull); m_Volumes.assign(GetNumberOfChannels()*m_Dimensions[3], dnull); m_Slices.assign(GetNumberOfChannels()*m_Dimensions[3]*m_Dimensions[2], dnull); ComputeOffsetTable(); Initialize(); m_Initialized = true; } void mitk::Image::Initialize(const mitk::PixelType& type, const mitk::TimeGeometry& geometry, unsigned int channels, int tDim ) { unsigned int dimensions[5]; dimensions[0] = (unsigned int)(geometry.GetExtendInWorld(0)+0.5); dimensions[1] = (unsigned int)(geometry.GetExtendInWorld(1)+0.5); dimensions[2] = (unsigned int)(geometry.GetExtendInWorld(2)+0.5); dimensions[3] = (tDim > 0) ? tDim : geometry.GetNumberOfTimeSteps(); dimensions[4] = 0; unsigned int dimension = 2; if ( dimensions[2] > 1 ) dimension = 3; if ( dimensions[3] > 1 ) dimension = 4; Initialize( type, dimension, dimensions, channels ); SetTimeGeometry(geometry.Clone().GetPointer()); //Old // Checks if the bounding box is inverted. Makes no sense for // a TimeGeometry, since bounding box is always in World Coordinate // and they are calculated from the Geometrie3D Points. // Check /* mitk::BoundingBox::BoundsArrayType bounds = geometry.GetBoundingBox()->GetBounds(); if( (bounds[0] != 0.0) || (bounds[2] != 0.0) || (bounds[4] != 0.0) ) { SlicedGeometry3D* slicedGeometry = GetSlicedGeometry(0); mitk::Point3D origin; origin.Fill(0.0); slicedGeometry->IndexToWorld(origin, origin); bounds[1]-=bounds[0]; bounds[3]-=bounds[2]; bounds[5]-=bounds[4]; bounds[0] = 0.0; bounds[2] = 0.0; bounds[4] = 0.0; this->m_ImageDescriptor->Initialize( this->m_Dimensions, this->m_Dimension ); slicedGeometry->SetBounds(bounds); slicedGeometry->GetIndexToWorldTransform()->SetOffset(origin.Get_vnl_vector().data_block()); GetTimeSlicedGeometry()->InitializeEvenlyTimed(slicedGeometry, m_Dimensions[3]); } */ } void mitk::Image::Initialize(const mitk::PixelType& type, const mitk::Geometry3D& geometry, unsigned int channels, int tDim ) { unsigned int dimensions[5]; dimensions[0] = (unsigned int)(geometry.GetExtent(0)+0.5); dimensions[1] = (unsigned int)(geometry.GetExtent(1)+0.5); dimensions[2] = (unsigned int)(geometry.GetExtent(2)+0.5); dimensions[3] = 0; dimensions[4] = 0; unsigned int dimension = 2; if ( dimensions[2] > 1 ) dimension = 3; if ( tDim > 0) { dimensions[3] = tDim; } else { const mitk::TimeSlicedGeometry* timeGeometry = dynamic_cast(&geometry); if ( timeGeometry != NULL ) { dimensions[3] = timeGeometry->GetTimeSteps(); } } if ( dimensions[3] > 1 ) dimension = 4; Initialize( type, dimension, dimensions, channels ); SetGeometry(static_cast(geometry.Clone().GetPointer())); mitk::BoundingBox::BoundsArrayType bounds = geometry.GetBoundingBox()->GetBounds(); if( (bounds[0] != 0.0) || (bounds[2] != 0.0) || (bounds[4] != 0.0) ) { SlicedGeometry3D* slicedGeometry = GetSlicedGeometry(0); mitk::Point3D origin; origin.Fill(0.0); slicedGeometry->IndexToWorld(origin, origin); bounds[1]-=bounds[0]; bounds[3]-=bounds[2]; bounds[5]-=bounds[4]; bounds[0] = 0.0; bounds[2] = 0.0; bounds[4] = 0.0; this->m_ImageDescriptor->Initialize( this->m_Dimensions, this->m_Dimension ); slicedGeometry->SetBounds(bounds); slicedGeometry->GetIndexToWorldTransform()->SetOffset(origin.Get_vnl_vector().data_block()); ProportionalTimeGeometry::Pointer timeGeometry = ProportionalTimeGeometry::New(); timeGeometry->Initialize(slicedGeometry, m_Dimensions[3]); SetTimeGeometry(timeGeometry); } } void mitk::Image::Initialize(const mitk::PixelType& type, int sDim, const mitk::Geometry2D& geometry2d, bool flipped, unsigned int channels, int tDim ) { SlicedGeometry3D::Pointer slicedGeometry = SlicedGeometry3D::New(); slicedGeometry->InitializeEvenlySpaced(static_cast(geometry2d.Clone().GetPointer()), sDim, flipped); Initialize(type, *slicedGeometry, channels, tDim); } void mitk::Image::Initialize(const mitk::Image* image) { Initialize(image->GetPixelType(), *image->GetTimeGeometry()); } void mitk::Image::Initialize(vtkImageData* vtkimagedata, int channels, int tDim, int sDim, int pDim) { if(vtkimagedata==NULL) return; m_Dimension=vtkimagedata->GetDataDimension(); unsigned int i, *tmpDimensions=new unsigned int[m_Dimension>4?m_Dimension:4]; for(i=0;iGetDimensions()[i]; if(m_Dimension<4) { unsigned int *p; for(i=0,p=tmpDimensions+m_Dimension;i<4-m_Dimension;++i, ++p) *p=1; } if(pDim>=0) { tmpDimensions[1]=pDim; if(m_Dimension < 2) m_Dimension = 2; } if(sDim>=0) { tmpDimensions[2]=sDim; if(m_Dimension < 3) m_Dimension = 3; } if(tDim>=0) { tmpDimensions[3]=tDim; if(m_Dimension < 4) m_Dimension = 4; } switch ( vtkimagedata->GetScalarType() ) { case VTK_BIT: case VTK_CHAR: //pixelType.Initialize(typeid(char), vtkimagedata->GetNumberOfScalarComponents()); Initialize(mitk::MakeScalarPixelType(), m_Dimension, tmpDimensions, channels); break; case VTK_UNSIGNED_CHAR: //pixelType.Initialize(typeid(unsigned char), vtkimagedata->GetNumberOfScalarComponents()); Initialize(mitk::MakeScalarPixelType(), m_Dimension, tmpDimensions, channels); break; case VTK_SHORT: //pixelType.Initialize(typeid(short), vtkimagedata->GetNumberOfScalarComponents()); Initialize(mitk::MakeScalarPixelType(), m_Dimension, tmpDimensions, channels); break; case VTK_UNSIGNED_SHORT: //pixelType.Initialize(typeid(unsigned short), vtkimagedata->GetNumberOfScalarComponents()); Initialize(mitk::MakeScalarPixelType(), m_Dimension, tmpDimensions, channels); break; case VTK_INT: //pixelType.Initialize(typeid(int), vtkimagedata->GetNumberOfScalarComponents()); Initialize(mitk::MakeScalarPixelType(), m_Dimension, tmpDimensions, channels); break; case VTK_UNSIGNED_INT: //pixelType.Initialize(typeid(unsigned int), vtkimagedata->GetNumberOfScalarComponents()); Initialize(mitk::MakeScalarPixelType(), m_Dimension, tmpDimensions, channels); break; case VTK_LONG: //pixelType.Initialize(typeid(long), vtkimagedata->GetNumberOfScalarComponents()); Initialize(mitk::MakeScalarPixelType(), m_Dimension, tmpDimensions, channels); break; case VTK_UNSIGNED_LONG: //pixelType.Initialize(typeid(unsigned long), vtkimagedata->GetNumberOfScalarComponents()); Initialize(mitk::MakeScalarPixelType(), m_Dimension, tmpDimensions, channels); break; case VTK_FLOAT: //pixelType.Initialize(typeid(float), vtkimagedata->GetNumberOfScalarComponents()); Initialize(mitk::MakeScalarPixelType(), m_Dimension, tmpDimensions, channels); break; case VTK_DOUBLE: //pixelType.Initialize(typeid(double), vtkimagedata->GetNumberOfScalarComponents()); Initialize(mitk::MakeScalarPixelType(), m_Dimension, tmpDimensions, channels); break; default: break; } /* Initialize(pixelType, m_Dimension, tmpDimensions, channels); */ const double *spacinglist = vtkimagedata->GetSpacing(); Vector3D spacing; FillVector3D(spacing, spacinglist[0], 1.0, 1.0); if(m_Dimension>=2) spacing[1]=spacinglist[1]; if(m_Dimension>=3) spacing[2]=spacinglist[2]; // access origin of vtkImage Point3D origin; vtkFloatingPointType vtkorigin[3]; vtkimagedata->GetOrigin(vtkorigin); FillVector3D(origin, vtkorigin[0], 0.0, 0.0); if(m_Dimension>=2) origin[1]=vtkorigin[1]; if(m_Dimension>=3) origin[2]=vtkorigin[2]; SlicedGeometry3D* slicedGeometry = GetSlicedGeometry(0); // re-initialize PlaneGeometry with origin and direction PlaneGeometry* planeGeometry = static_cast(slicedGeometry->GetGeometry2D(0)); planeGeometry->SetOrigin(origin); // re-initialize SlicedGeometry3D slicedGeometry->SetOrigin(origin); slicedGeometry->SetSpacing(spacing); ProportionalTimeGeometry::Pointer timeGeometry = ProportionalTimeGeometry::New(); timeGeometry->Initialize(slicedGeometry, m_Dimensions[3]); SetTimeGeometry(timeGeometry); delete [] tmpDimensions; } bool mitk::Image::IsValidSlice(int s, int t, int n) const { if(m_Initialized) return ((s>=0) && (s<(int)m_Dimensions[2]) && (t>=0) && (t< (int) m_Dimensions[3]) && (n>=0) && (n< (int)GetNumberOfChannels())); else return false; } bool mitk::Image::IsValidVolume(int t, int n) const { if(m_Initialized) return IsValidSlice(0, t, n); else return false; } bool mitk::Image::IsValidChannel(int n) const { if(m_Initialized) return IsValidSlice(0, 0, n); else return false; } void mitk::Image::ComputeOffsetTable() { if(m_OffsetTable!=NULL) delete [] m_OffsetTable; m_OffsetTable=new size_t[m_Dimension>4 ? m_Dimension+1 : 4+1]; unsigned int i; size_t num=1; m_OffsetTable[0] = 1; for (i=0; i < m_Dimension; ++i) { num *= m_Dimensions[i]; m_OffsetTable[i+1] = num; } for (;i < 4; ++i) m_OffsetTable[i+1] = num; } bool mitk::Image::IsValidTimeStep(int t) const { return ( ( m_Dimension >= 4 && t <= (int)m_Dimensions[3] && t > 0 ) || (t == 0) ); } void mitk::Image::Expand(unsigned int timeSteps) { if(timeSteps < 1) itkExceptionMacro(<< "Invalid timestep in Image!"); Superclass::Expand(timeSteps); } int mitk::Image::GetSliceIndex(int s, int t, int n) const { if(IsValidSlice(s,t,n)==false) return false; return ((size_t)s)+((size_t) t)*m_Dimensions[2]+((size_t) n)*m_Dimensions[3]*m_Dimensions[2]; //?? } int mitk::Image::GetVolumeIndex(int t, int n) const { if(IsValidVolume(t,n)==false) return false; return ((size_t)t)+((size_t) n)*m_Dimensions[3]; //?? } mitk::Image::ImageDataItemPointer mitk::Image::AllocateSliceData(int s, int t, int n, void *data, ImportMemoryManagementType importMemoryManagement) { int pos; pos=GetSliceIndex(s,t,n); const size_t ptypeSize = this->m_ImageDescriptor->GetChannelTypeById(n).GetSize(); // is slice available as part of a volume that is available? ImageDataItemPointer sl, ch, vol; vol=m_Volumes[GetVolumeIndex(t,n)]; if(vol.GetPointer()!=NULL) { sl=new ImageDataItem(*vol, m_ImageDescriptor, 2, data, importMemoryManagement == ManageMemory, ((size_t) s)*m_OffsetTable[2]*(ptypeSize)); sl->SetComplete(true); return m_Slices[pos]=sl; } // is slice available as part of a channel that is available? ch=m_Channels[n]; if(ch.GetPointer()!=NULL) { sl=new ImageDataItem(*ch, m_ImageDescriptor, 2, data, importMemoryManagement == ManageMemory, (((size_t) s)*m_OffsetTable[2]+((size_t) t)*m_OffsetTable[3])*(ptypeSize)); sl->SetComplete(true); return m_Slices[pos]=sl; } // allocate new volume (instead of a single slice to keep data together!) m_Volumes[GetVolumeIndex(t,n)]=vol=AllocateVolumeData(t,n,NULL,importMemoryManagement); sl=new ImageDataItem(*vol, m_ImageDescriptor, 2, data, importMemoryManagement == ManageMemory, ((size_t) s)*m_OffsetTable[2]*(ptypeSize)); sl->SetComplete(true); return m_Slices[pos]=sl; ////ALTERNATIVE: //// allocate new slice //sl=new ImageDataItem(*m_PixelType, 2, m_Dimensions); //m_Slices[pos]=sl; //return vol; } mitk::Image::ImageDataItemPointer mitk::Image::AllocateVolumeData(int t, int n, void *data, ImportMemoryManagementType importMemoryManagement) { int pos; pos=GetVolumeIndex(t,n); const size_t ptypeSize = this->m_ImageDescriptor->GetChannelTypeById(n).GetSize(); // is volume available as part of a channel that is available? ImageDataItemPointer ch, vol; ch=m_Channels[n]; if(ch.GetPointer()!=NULL) { vol=new ImageDataItem(*ch, m_ImageDescriptor, 3, data,importMemoryManagement == ManageMemory, (((size_t) t)*m_OffsetTable[3])*(ptypeSize)); return m_Volumes[pos]=vol; } mitk::PixelType chPixelType = this->m_ImageDescriptor->GetChannelTypeById(n); // allocate new volume if(importMemoryManagement == CopyMemory) { vol=new ImageDataItem( chPixelType, 3, m_Dimensions, NULL, true); if(data != NULL) std::memcpy(vol->GetData(), data, m_OffsetTable[3]*(ptypeSize)); } else { vol=new ImageDataItem( chPixelType, 3, m_Dimensions, data, importMemoryManagement == ManageMemory); } m_Volumes[pos]=vol; return vol; } mitk::Image::ImageDataItemPointer mitk::Image::AllocateChannelData(int n, void *data, ImportMemoryManagementType importMemoryManagement) { ImageDataItemPointer ch; // allocate new channel if(importMemoryManagement == CopyMemory) { const size_t ptypeSize = this->m_ImageDescriptor->GetChannelTypeById(n).GetSize(); ch=new ImageDataItem(this->m_ImageDescriptor, NULL, true); if(data != NULL) std::memcpy(ch->GetData(), data, m_OffsetTable[4]*(ptypeSize)); } else { ch=new ImageDataItem(this->m_ImageDescriptor, data, importMemoryManagement == ManageMemory); } m_Channels[n]=ch; return ch; } unsigned int* mitk::Image::GetDimensions() const { return m_Dimensions; } void mitk::Image::Clear() { Superclass::Clear(); delete [] m_Dimensions; m_Dimensions = NULL; } void mitk::Image::SetGeometry(Geometry3D* aGeometry3D) { // Please be aware of the 0.5 offset/pixel-center issue! See Geometry documentation for further information if(aGeometry3D->GetImageGeometry()==false) { MITK_INFO << "WARNING: Applied a non-image geometry onto an image. Please be SURE that this geometry is pixel-center-based! If it is not, you need to call Geometry3D->ChangeImageGeometryConsideringOriginOffset(true) before calling image->setGeometry(..)\n"; } Superclass::SetGeometry(aGeometry3D); for (TimeStepType step = 0; step < GetTimeGeometry()->GetNumberOfTimeSteps(); ++step) GetTimeGeometry()->GetGeometryForTimeStep(step)->ImageGeometryOn(); } void mitk::Image::PrintSelf(std::ostream& os, itk::Indent indent) const { unsigned char i; if(m_Initialized) { os << indent << " Dimension: " << m_Dimension << std::endl; os << indent << " Dimensions: "; for(i=0; i < m_Dimension; ++i) os << GetDimension(i) << " "; os << std::endl; for(unsigned int ch=0; ch < this->m_ImageDescriptor->GetNumberOfChannels(); ch++) { mitk::PixelType chPixelType = this->m_ImageDescriptor->GetChannelTypeById(ch); os << indent << " Channel: " << this->m_ImageDescriptor->GetChannelName(ch) << std::endl; os << indent << " PixelType: " << chPixelType.GetTypeId().name() << std::endl; os << indent << " BitsPerElement: " << chPixelType.GetSize() << std::endl; os << indent << " NumberOfComponents: " << chPixelType.GetNumberOfComponents() << std::endl; os << indent << " BitsPerComponent: " << chPixelType.GetBitsPerComponent() << std::endl; } } else { os << indent << " Image not initialized: m_Initialized: false" << std::endl; } Superclass::PrintSelf(os,indent); } bool mitk::Image::IsRotated() const { const mitk::Geometry3D* geo = this->GetGeometry(); bool ret = false; if(geo) { const vnl_matrix_fixed & mx = geo->GetIndexToWorldTransform()->GetMatrix().GetVnlMatrix(); float ref = 0; for(short k = 0; k < 3; ++k) ref += mx[k][k]; ref/=1000; // Arbitrary value; if a non-diagonal (nd) element is bigger then this, matrix is considered nd. for(short i = 0; i < 3; ++i) { for(short j = 0; j < 3; ++j) { if(i != j) { if(std::abs(mx[i][j]) > ref) // matrix is nd ret = true; } } } } return ret; } #include "mitkImageStatisticsHolder.h" //##Documentation mitk::ScalarType mitk::Image::GetScalarValueMin(int t) const { return m_ImageStatistics->GetScalarValueMin(t); } //##Documentation //## \brief Get the maximum for scalar images mitk::ScalarType mitk::Image::GetScalarValueMax(int t) const { return m_ImageStatistics->GetScalarValueMax(t); } //##Documentation //## \brief Get the second smallest value for scalar images mitk::ScalarType mitk::Image::GetScalarValue2ndMin(int t) const { return m_ImageStatistics->GetScalarValue2ndMin(t); } mitk::ScalarType mitk::Image::GetScalarValueMinNoRecompute( unsigned int t ) const { return m_ImageStatistics->GetScalarValueMinNoRecompute(t); } mitk::ScalarType mitk::Image::GetScalarValue2ndMinNoRecompute( unsigned int t ) const { return m_ImageStatistics->GetScalarValue2ndMinNoRecompute(t); } mitk::ScalarType mitk::Image::GetScalarValue2ndMax(int t) const { return m_ImageStatistics->GetScalarValue2ndMax(t); } mitk::ScalarType mitk::Image::GetScalarValueMaxNoRecompute( unsigned int t) const { return m_ImageStatistics->GetScalarValueMaxNoRecompute(t); } mitk::ScalarType mitk::Image::GetScalarValue2ndMaxNoRecompute( unsigned int t ) const { return m_ImageStatistics->GetScalarValue2ndMaxNoRecompute(t); } mitk::ScalarType mitk::Image::GetCountOfMinValuedVoxels(int t ) const { return m_ImageStatistics->GetCountOfMinValuedVoxels(t); } mitk::ScalarType mitk::Image::GetCountOfMaxValuedVoxels(int t) const { return m_ImageStatistics->GetCountOfMaxValuedVoxels(t); } unsigned int mitk::Image::GetCountOfMaxValuedVoxelsNoRecompute( unsigned int t ) const { return m_ImageStatistics->GetCountOfMaxValuedVoxelsNoRecompute(t); } unsigned int mitk::Image::GetCountOfMinValuedVoxelsNoRecompute( unsigned int t ) const { return m_ImageStatistics->GetCountOfMinValuedVoxelsNoRecompute(t); } diff --git a/Core/Code/DataManagement/mitkImage.h b/Core/Code/DataManagement/mitkImage.h index 0b02d819e5..b923bb1c5f 100644 --- a/Core/Code/DataManagement/mitkImage.h +++ b/Core/Code/DataManagement/mitkImage.h @@ -1,681 +1,681 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #ifndef MITKIMAGE_H_HEADER_INCLUDED_C1C2FCD2 #define MITKIMAGE_H_HEADER_INCLUDED_C1C2FCD2 #include #include "mitkSlicedData.h" #include "mitkBaseData.h" #include "mitkLevelWindow.h" #include "mitkPlaneGeometry.h" #include #include "mitkImageDataItem.h" #include "mitkImageDescriptor.h" #include "mitkImageAccessorBase.h" #include "mitkImageVtkAccessor.h" #ifndef __itkHistogram_h #include #endif class vtkImageData; namespace mitk { class SubImageSelector; class ImageTimeSelector; class ImageStatisticsHolder; //##Documentation //## @brief Image class for storing images //## //## Can be asked for header information, the data vector, //## the mitkIpPicDescriptor struct or vtkImageData objects. If not the complete //## data is required, the appropriate SubImageSelector class should be used //## for access. //## Image organizes sets of slices (s x 2D), volumes (t x 3D) and channels (n //## x ND). Channels are for different kind of data, e.g., morphology in //## channel 0, velocities in channel 1. All channels must have the same Geometry! In //## particular, the dimensions of all channels are the same, only the pixel-type //## may differ between channels. //## //## For importing ITK images use of mitk::ITKImageImport is recommended, see //## \ref Adaptor. //## //## For ITK v3.8 and older: Converting coordinates from the ITK physical //## coordinate system (which does not support rotated images) to the MITK world //## coordinate system should be performed via the Geometry3D of the Image, see //## Geometry3D::WorldToItkPhysicalPoint. //## @ingroup Data class MITK_CORE_EXPORT Image : public SlicedData { friend class SubImageSelector; friend class ImageAccessorBase; friend class ImageVtkAccessor; friend class ImageReadAccessor; friend class ImageWriteAccessor; public: mitkClassMacro(Image, SlicedData); itkNewMacro(Self); mitkCloneMacro(Image); /** Smart Pointer type to a ImageDataItem. */ typedef itk::SmartPointer ImageDataItemPointer; typedef itk::Statistics::Histogram HistogramType; typedef mitk::ImageStatisticsHolder* StatisticsHolderPointer; //## @param ImportMemoryManagementType This parameter is evaluated when setting new data to an image. //## The different options are: //## CopyMemory: Data to be set is copied and assigned to a new memory block. Data memory block will be freed on deletion of mitk::Image. //## MamageMemory: Data to be set will be referenced, and Data memory block will be freed on deletion of mitk::Image. //## Reference Memory: Data to be set will be referenced, but Data memory block will not be freed on deletion of mitk::Image. //## DontManageMemory = ReferenceMemory. enum ImportMemoryManagementType { CopyMemory, ManageMemory, ReferenceMemory, DontManageMemory = ReferenceMemory }; //##Documentation //## @brief Vector container of SmartPointers to ImageDataItems; //## Class is only for internal usage to allow convenient access to all slices over iterators; //## See documentation of ImageDataItem for details. typedef std::vector ImageDataItemPointerArray; public: //##Documentation //## @brief Returns the PixelType of channel @a n. const mitk::PixelType GetPixelType(int n = 0) const; //##Documentation //## @brief Get dimension of the image //## unsigned int GetDimension() const; //##Documentation //## @brief Get the size of dimension @a i (e.g., i=0 results in the number of pixels in x-direction). //## //## @sa GetDimensions() unsigned int GetDimension(int i) const; /** @brief Get the data vector of the complete image, i.e., of all channels linked together. If you only want to access a slice, volume at a specific time or single channel use one of the SubImageSelector classes. \deprecatedSince{2012_09} Please use image accessors instead: See Doxygen/Related-Pages/Concepts/Image. This method can be replaced by ImageWriteAccessor::GetData() or ImageReadAccessor::GetData() */ DEPRECATED(virtual void* GetData()); public: /** @brief Get the pixel value at one specific index position. The pixel type is always being converted to double. \deprecatedSince{2012_09} Please use image accessors instead: See Doxygen/Related-Pages/Concepts/Image. This method can be replaced by a method from ImagePixelWriteAccessor or ImagePixelReadAccessor */ DEPRECATED(double GetPixelValueByIndex(const mitk::Index3D& position, unsigned int timestep = 0)); /** @brief Get the pixel value at one specific world position. The pixel type is always being converted to double. \deprecatedSince{2012_09} Please use image accessors instead: See Doxygen/Related-Pages/Concepts/Image. This method can be replaced by a method from ImagePixelWriteAccessor or ImagePixelReadAccessor */ DEPRECATED(double GetPixelValueByWorldCoordinate(const mitk::Point3D& position, unsigned int timestep = 0)); //##Documentation //## @brief Get a volume at a specific time @a t of channel @a n as a vtkImageData. virtual ImageVtkAccessor* GetVtkImageData(int t = 0, int n = 0); //##Documentation //## @brief Get the complete image, i.e., all channels linked together, as a @a mitkIpPicDescriptor. //## //## If you only want to access a slice, volume at a specific time or single channel //## use one of the SubImageSelector classes. //virtual mitkIpPicDescriptor* GetPic(); //##Documentation //## @brief Check whether slice @a s at time @a t in channel @a n is set virtual bool IsSliceSet(int s = 0, int t = 0, int n = 0) const; //##Documentation //## @brief Check whether volume at time @a t in channel @a n is set virtual bool IsVolumeSet(int t = 0, int n = 0) const; //##Documentation //## @brief Check whether the channel @a n is set virtual bool IsChannelSet(int n = 0) const; //##Documentation //## @brief Set @a data as slice @a s at time @a t in channel @a n. It is in //## the responsibility of the caller to ensure that the data vector @a data //## is really a slice (at least is not smaller than a slice), since there is //## no chance to check this. //## //## The data is copied to an array managed by the image. If the image shall //## reference the data, use SetImportSlice with ImportMemoryManagementType //## set to ReferenceMemory. For importing ITK images use of mitk:: //## ITKImageImport is recommended. //## @sa SetPicSlice, SetImportSlice, SetImportVolume virtual bool SetSlice(const void *data, int s = 0, int t = 0, int n = 0); //##Documentation //## @brief Set @a data as volume at time @a t in channel @a n. It is in //## the responsibility of the caller to ensure that the data vector @a data //## is really a volume (at least is not smaller than a volume), since there is //## no chance to check this. //## //## The data is copied to an array managed by the image. If the image shall //## reference the data, use SetImportVolume with ImportMemoryManagementType //## set to ReferenceMemory. For importing ITK images use of mitk:: //## ITKImageImport is recommended. //## @sa SetPicVolume, SetImportVolume virtual bool SetVolume(const void *data, int t = 0, int n = 0); //##Documentation //## @brief Set @a data in channel @a n. It is in //## the responsibility of the caller to ensure that the data vector @a data //## is really a channel (at least is not smaller than a channel), since there is //## no chance to check this. //## //## The data is copied to an array managed by the image. If the image shall //## reference the data, use SetImportChannel with ImportMemoryManagementType //## set to ReferenceMemory. For importing ITK images use of mitk:: //## ITKImageImport is recommended. //## @sa SetPicChannel, SetImportChannel virtual bool SetChannel(const void *data, int n = 0); //##Documentation //## @brief Set @a data as slice @a s at time @a t in channel @a n. It is in //## the responsibility of the caller to ensure that the data vector @a data //## is really a slice (at least is not smaller than a slice), since there is //## no chance to check this. //## //## The data is managed according to the parameter \a importMemoryManagement. //## @sa SetPicSlice virtual bool SetImportSlice(void *data, int s = 0, int t = 0, int n = 0, ImportMemoryManagementType importMemoryManagement = CopyMemory ); //##Documentation //## @brief Set @a data as volume at time @a t in channel @a n. It is in //## the responsibility of the caller to ensure that the data vector @a data //## is really a volume (at least is not smaller than a volume), since there is //## no chance to check this. //## //## The data is managed according to the parameter \a importMemoryManagement. //## @sa SetPicVolume virtual bool SetImportVolume(void *data, int t = 0, int n = 0, ImportMemoryManagementType importMemoryManagement = CopyMemory ); //##Documentation //## @brief Set @a data in channel @a n. It is in //## the responsibility of the caller to ensure that the data vector @a data //## is really a channel (at least is not smaller than a channel), since there is //## no chance to check this. //## //## The data is managed according to the parameter \a importMemoryManagement. //## @sa SetPicChannel virtual bool SetImportChannel(void *data, int n = 0, ImportMemoryManagementType importMemoryManagement = CopyMemory ); //##Documentation //## initialize new (or re-initialize) image information //## @warning Initialize() by pic assumes a plane, evenly spaced geometry starting at (0,0,0). virtual void Initialize(const mitk::PixelType& type, unsigned int dimension, const unsigned int *dimensions, unsigned int channels = 1); //##Documentation //## initialize new (or re-initialize) image information by a Geometry3D //## //## @param tDim override time dimension (@a n[3]) if @a geometry is a TimeSlicedGeometry (if >0) virtual void Initialize(const mitk::PixelType& type, const mitk::Geometry3D& geometry, unsigned int channels = 1, int tDim=-1); /** * \brief Initialize new (or re-initialize) image information by a TimeGeometry * * \param tDim override time dimension if the value is bigger than 0 (Default -1) */ virtual void Initialize(const mitk::PixelType& type, const mitk::TimeGeometry& geometry, unsigned int channels = 1, int tDim=-1 ); //##Documentation //## initialize new (or re-initialize) image information by a Geometry2D and number of slices //## //## Initializes the bounding box according to the width/height of the //## Geometry2D and @a sDim via SlicedGeometry3D::InitializeEvenlySpaced. //## The spacing is calculated from the Geometry2D. //## @param tDim override time dimension (@a n[3]) if @a geometry is a TimeSlicedGeometry (if >0) //## \sa SlicedGeometry3D::InitializeEvenlySpaced virtual void Initialize(const mitk::PixelType& type, int sDim, const mitk::Geometry2D& geometry2d, bool flipped = false, unsigned int channels = 1, int tDim=-1); //##Documentation //## initialize new (or re-initialize) image information by another //## mitk-image. //## Only the header is used, not the data vector! //## virtual void Initialize(const mitk::Image* image); virtual void Initialize(const mitk::ImageDescriptor::Pointer inDesc); //##Documentation //## initialize new (or re-initialize) image information by @a pic. //## Dimensions and @a Geometry3D /@a Geometry2D are set according //## to the tags in @a pic. //## Only the header is used, not the data vector! Use SetPicVolume(pic) //## to set the data vector. //## //## @param tDim override time dimension (@a n[3]) in @a pic (if >0) //## @param sDim override z-space dimension (@a n[2]) in @a pic (if >0) //## @warning Initialize() by pic assumes a plane, evenly spaced geometry starting at (0,0,0). //virtual void Initialize(const mitkIpPicDescriptor* pic, int channels = 1, int tDim = -1, int sDim = -1); //##Documentation //## initialize new (or re-initialize) image information by @a vtkimagedata, //## a vtk-image. //## Only the header is used, not the data vector! Use //## SetVolume(vtkimage->GetScalarPointer()) to set the data vector. //## //## @param tDim override time dimension in @a vtkimagedata (if >0 and <) //## @param sDim override z-space dimension in @a vtkimagedata (if >0 and <) //## @param pDim override y-space dimension in @a vtkimagedata (if >0 and <) virtual void Initialize(vtkImageData* vtkimagedata, int channels = 1, int tDim = -1, int sDim = -1, int pDim = -1); //##Documentation //## initialize new (or re-initialize) image information by @a itkimage, //## a templated itk-image. //## Only the header is used, not the data vector! Use //## SetVolume(itkimage->GetBufferPointer()) to set the data vector. //## //## @param tDim override time dimension in @a itkimage (if >0 and <) //## @param sDim override z-space dimension in @a itkimage (if >0 and <) template void InitializeByItk(const itkImageType* itkimage, int channels = 1, int tDim = -1, int sDim=-1) { if(itkimage==NULL) return; MITK_DEBUG << "Initializing MITK image from ITK image."; // build array with dimensions in each direction with at least 4 entries m_Dimension=itkimage->GetImageDimension(); unsigned int i, *tmpDimensions=new unsigned int[m_Dimension>4?m_Dimension:4]; for(i=0;iGetLargestPossibleRegion().GetSize().GetSize()[i]; if(m_Dimension<4) { unsigned int *p; for(i=0,p=tmpDimensions+m_Dimension;i<4-m_Dimension;++i, ++p) *p=1; } // overwrite number of slices if sDim is set if((m_Dimension>2) && (sDim>=0)) tmpDimensions[2]=sDim; // overwrite number of time points if tDim is set if((m_Dimension>3) && (tDim>=0)) tmpDimensions[3]=tDim; // rough initialization of Image // mitk::PixelType importType = ImportItkPixelType( itkimage::PixelType ); Initialize(MakePixelType(), m_Dimension, tmpDimensions, channels); const typename itkImageType::SpacingType & itkspacing = itkimage->GetSpacing(); MITK_DEBUG << "ITK spacing " << itkspacing; // access spacing of itk::Image Vector3D spacing; FillVector3D(spacing, itkspacing[0], 1.0, 1.0); if(m_Dimension >= 2) spacing[1]=itkspacing[1]; if(m_Dimension >= 3) spacing[2]=itkspacing[2]; // access origin of itk::Image Point3D origin; const typename itkImageType::PointType & itkorigin = itkimage->GetOrigin(); MITK_DEBUG << "ITK origin " << itkorigin; FillVector3D(origin, itkorigin[0], 0.0, 0.0); if(m_Dimension>=2) origin[1]=itkorigin[1]; if(m_Dimension>=3) origin[2]=itkorigin[2]; // access direction of itk::Imagm_PixelType = new mitk::PixelType(type);e and include spacing const typename itkImageType::DirectionType & itkdirection = itkimage->GetDirection(); MITK_DEBUG << "ITK direction " << itkdirection; mitk::Matrix3D matrix; matrix.SetIdentity(); unsigned int j, itkDimMax3 = (m_Dimension >= 3? 3 : m_Dimension); // check if spacing has no zero entry and itkdirection has no zero columns bool itkdirectionOk = true; mitk::ScalarType columnSum; for( j=0; j < itkDimMax3; ++j ) { columnSum = 0.0; for ( i=0; i < itkDimMax3; ++i) { columnSum += fabs(itkdirection[i][j]); } if(columnSum < mitk::eps) { itkdirectionOk = false; } if ( (spacing[j] < - mitk::eps) // (normally sized) negative value && (j==2) && (m_Dimensions[2] == 1) ) { // Negative spacings can occur when reading single DICOM slices with ITK via GDCMIO // In these cases spacing is not determind by ITK correctly (because it distinguishes correctly // between slice thickness and inter slice distance -- slice distance is meaningless for // single slices). // I experienced that ITK produced something meaningful nonetheless because is is // evaluating the tag "(0018,0088) Spacing between slices" as a fallback. This tag is not // reliable (http://www.itk.org/pipermail/insight-users/2005-September/014711.html) // but gives at least a hint. // In real world cases I experienced that this tag contained the correct inter slice distance // with a negative sign, so we just invert such negative spacings. MITK_WARN << "Illegal value of itk::Image::GetSpacing()[" << j <<"]=" << spacing[j] << ". Using inverted value " << -spacing[j]; spacing[j] = -spacing[j]; } else if (spacing[j] < mitk::eps) // value near zero { MITK_ERROR << "Illegal value of itk::Image::GetSpacing()[" << j <<"]=" << spacing[j] << ". Using 1.0 instead."; spacing[j] = 1.0; } } if(itkdirectionOk == false) { MITK_ERROR << "Illegal matrix returned by itk::Image::GetDirection():" << itkdirection << " Using identity instead."; for ( i=0; i < itkDimMax3; ++i) for( j=0; j < itkDimMax3; ++j ) if ( i == j ) matrix[i][j] = spacing[j]; else matrix[i][j] = 0.0; } else { for ( i=0; i < itkDimMax3; ++i) for( j=0; j < itkDimMax3; ++j ) matrix[i][j] = itkdirection[i][j]*spacing[j]; } // re-initialize PlaneGeometry with origin and direction PlaneGeometry* planeGeometry = static_cast(GetSlicedGeometry(0)->GetGeometry2D(0)); planeGeometry->SetOrigin(origin); planeGeometry->GetIndexToWorldTransform()->SetMatrix(matrix); // re-initialize SlicedGeometry3D SlicedGeometry3D* slicedGeometry = GetSlicedGeometry(0); slicedGeometry->InitializeEvenlySpaced(planeGeometry, m_Dimensions[2]); slicedGeometry->SetSpacing(spacing); - // re-initialize TimeSlicedGeometry + // re-initialize TimeGeometry ProportionalTimeGeometry::Pointer timeGeometry = ProportionalTimeGeometry::New(); timeGeometry->Initialize(slicedGeometry, m_Dimensions[3]); SetTimeGeometry(timeGeometry); // clean-up delete [] tmpDimensions; this->Initialize(); }; //##Documentation //## @brief Check whether slice @a s at time @a t in channel @a n is valid, i.e., //## is (or can be) inside of the image virtual bool IsValidSlice(int s = 0, int t = 0, int n = 0) const; //##Documentation //## @brief Check whether volume at time @a t in channel @a n is valid, i.e., //## is (or can be) inside of the image virtual bool IsValidVolume(int t = 0, int n = 0) const; //##Documentation //## @brief Check whether the channel @a n is valid, i.e., //## is (or can be) inside of the image virtual bool IsValidChannel(int n = 0) const; //##Documentation //## @brief Returns true if an image is rotated, i.e. its geometry's //## transformation matrix has nonzero elements besides the diagonal. //## Non-diagonal elements are checked if larger then 1/1000 of the matrix' trace. bool IsRotated() const; //##Documentation //## @brief Get the sizes of all dimensions as an integer-array. //## //## @sa GetDimension(int i); unsigned int* GetDimensions() const; ImageDescriptor::Pointer GetImageDescriptor() const { return m_ImageDescriptor; } ChannelDescriptor GetChannelDescriptor( int id = 0 ) const { return m_ImageDescriptor->GetChannelDescriptor(id); } /** \brief Sets a geometry to an image. */ virtual void SetGeometry(Geometry3D* aGeometry3D); /** * @warning for internal use only */ virtual ImageDataItemPointer GetSliceData(int s = 0, int t = 0, int n = 0, void *data = NULL, ImportMemoryManagementType importMemoryManagement = CopyMemory); /** * @warning for internal use only */ virtual ImageDataItemPointer GetVolumeData(int t = 0, int n = 0, void *data = NULL, ImportMemoryManagementType importMemoryManagement = CopyMemory); /** * @warning for internal use only */ virtual ImageDataItemPointer GetChannelData(int n = 0, void *data = NULL, ImportMemoryManagementType importMemoryManagement = CopyMemory); /** \brief (DEPRECATED) Get the minimum for scalar images */ DEPRECATED (ScalarType GetScalarValueMin(int t=0) const); /** \brief (DEPRECATED) Get the maximum for scalar images \warning This method is deprecated and will not be available in the future. Use the \a GetStatistics instead */ DEPRECATED (ScalarType GetScalarValueMax(int t=0) const); /** \brief (DEPRECATED) Get the second smallest value for scalar images \warning This method is deprecated and will not be available in the future. Use the \a GetStatistics instead */ DEPRECATED (ScalarType GetScalarValue2ndMin(int t=0) const); /** \brief (DEPRECATED) Get the smallest value for scalar images, but do not recompute it first \warning This method is deprecated and will not be available in the future. Use the \a GetStatistics instead */ DEPRECATED (ScalarType GetScalarValueMinNoRecompute( unsigned int t = 0 ) const); /** \brief (DEPRECATED) Get the second smallest value for scalar images, but do not recompute it first \warning This method is deprecated and will not be available in the future. Use the \a GetStatistics instead */ DEPRECATED (ScalarType GetScalarValue2ndMinNoRecompute( unsigned int t = 0 ) const); /** \brief (DEPRECATED) Get the second largest value for scalar images \warning This method is deprecated and will not be available in the future. Use the \a GetStatistics instead */ DEPRECATED (ScalarType GetScalarValue2ndMax(int t=0) const); /** \brief (DEPRECATED) Get the largest value for scalar images, but do not recompute it first \warning This method is deprecated and will not be available in the future. Use the \a GetStatistics instead */ DEPRECATED (ScalarType GetScalarValueMaxNoRecompute( unsigned int t = 0 ) const ); /** \brief (DEPRECATED) Get the second largest value for scalar images, but do not recompute it first \warning This method is deprecated and will not be available in the future. Use the \a GetStatistics instead */ DEPRECATED (ScalarType GetScalarValue2ndMaxNoRecompute( unsigned int t = 0 ) const); /** \brief (DEPRECATED) Get the count of voxels with the smallest scalar value in the dataset \warning This method is deprecated and will not be available in the future. Use the \a GetStatistics instead */ DEPRECATED (ScalarType GetCountOfMinValuedVoxels(int t = 0) const); /** \brief (DEPRECATED) Get the count of voxels with the largest scalar value in the dataset \warning This method is deprecated and will not be available in the future. Use the \a GetStatistics instead */ DEPRECATED (ScalarType GetCountOfMaxValuedVoxels(int t = 0) const); /** \brief (DEPRECATED) Get the count of voxels with the largest scalar value in the dataset \warning This method is deprecated and will not be available in the future. Use the \a GetStatistics instead */ DEPRECATED (unsigned int GetCountOfMaxValuedVoxelsNoRecompute( unsigned int t = 0 ) const); /** \brief (DEPRECATED) Get the count of voxels with the smallest scalar value in the dataset \warning This method is deprecated and will not be available in the future. Use the \a GetStatistics instead */ DEPRECATED (unsigned int GetCountOfMinValuedVoxelsNoRecompute( unsigned int t = 0 ) const); /** \brief Returns a pointer to the ImageStatisticsHolder object that holds all statistics information for the image. All Get-methods for statistics properties formerly accessible directly from an Image object are now moved to the new \a ImageStatisticsHolder object. */ StatisticsHolderPointer GetStatistics() const { return m_ImageStatistics; } protected: int GetSliceIndex(int s = 0, int t = 0, int n = 0) const; int GetVolumeIndex(int t = 0, int n = 0) const; void ComputeOffsetTable(); virtual bool IsValidTimeStep(int t) const; virtual void Expand( unsigned int timeSteps ); virtual ImageDataItemPointer AllocateSliceData(int s = 0, int t = 0, int n = 0, void *data = NULL, ImportMemoryManagementType importMemoryManagement = CopyMemory); virtual ImageDataItemPointer AllocateVolumeData(int t = 0, int n = 0, void *data = NULL, ImportMemoryManagementType importMemoryManagement = CopyMemory); virtual ImageDataItemPointer AllocateChannelData(int n = 0, void *data = NULL, ImportMemoryManagementType importMemoryManagement = CopyMemory); Image(); Image(const Image &other); virtual ~Image(); virtual void Clear(); //## @warning Has to be called by every Initialize method! virtual void Initialize(); virtual void PrintSelf(std::ostream& os, itk::Indent indent) const; mutable ImageDataItemPointerArray m_Channels; mutable ImageDataItemPointerArray m_Volumes; mutable ImageDataItemPointerArray m_Slices; unsigned int m_Dimension; unsigned int* m_Dimensions; ImageDescriptor::Pointer m_ImageDescriptor; size_t *m_OffsetTable; ImageDataItemPointer m_CompleteData; // Image statistics Holder replaces the former implementation directly inside this class friend class ImageStatisticsHolder; StatisticsHolderPointer m_ImageStatistics; private: /** Stores all existing ImageReadAccessors */ std::vector m_Readers; /** Stores all existing ImageWriteAccessors */ std::vector m_Writers; /** Stores all existing ImageVtkAccessors */ std::vector m_VtkReaders; /** A mutex, which needs to be locked to manage m_Readers and m_Writers */ itk::SimpleFastMutexLock m_ReadWriteLock; /** A mutex, which needs to be locked to manage m_VtkReaders */ itk::SimpleFastMutexLock m_VtkReadersLock; }; //##Documentation //## @brief Cast an itk::Image (with a specific type) to an mitk::Image. //## //## CastToMitkImage does not cast pixel types etc., just image data //## Needs "mitkImage.h" header included. //## If you get a compile error, try image.GetPointer(); //## @ingroup Adaptor //## \sa mitkITKImageImport template void CastToMitkImage(const itk::SmartPointer& itkimage, itk::SmartPointer& mitkoutputimage) { if(mitkoutputimage.IsNull()) { mitkoutputimage = mitk::Image::New(); } mitkoutputimage->InitializeByItk(itkimage.GetPointer()); mitkoutputimage->SetChannel(itkimage->GetBufferPointer()); } //##Documentation //## @brief Cast an itk::Image (with a specific type) to an mitk::Image. //## //## CastToMitkImage does not cast pixel types etc., just image data //## Needs "mitkImage.h" header included. //## If you get a compile error, try image.GetPointer(); //## @ingroup Adaptor //## \sa mitkITKImageImport template void CastToMitkImage(const ItkOutputImageType* itkimage, itk::SmartPointer& mitkoutputimage) { if(mitkoutputimage.IsNull()) { mitkoutputimage = mitk::Image::New(); } mitkoutputimage->InitializeByItk(itkimage); mitkoutputimage->SetChannel(itkimage->GetBufferPointer()); } } // namespace mitk #endif /* MITKIMAGE_H_HEADER_INCLUDED_C1C2FCD2 */ diff --git a/Core/Code/IO/mitkImageWriter.cpp b/Core/Code/IO/mitkImageWriter.cpp index 1ed1ace48e..3312bb4891 100644 --- a/Core/Code/IO/mitkImageWriter.cpp +++ b/Core/Code/IO/mitkImageWriter.cpp @@ -1,379 +1,379 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkImageWriter.h" #include "mitkItkPictureWrite.h" #include "mitkImage.h" #include "mitkImageTimeSelector.h" #include "mitkImageAccessByItk.h" #include "mitkImageReadAccessor.h" #include #include mitk::ImageWriter::ImageWriter() { this->SetNumberOfRequiredInputs( 1 ); m_MimeType = ""; SetDefaultExtension(); } mitk::ImageWriter::~ImageWriter() { } void mitk::ImageWriter::SetDefaultExtension() { m_Extension = ".mhd"; } #include #include #include static void writeVti(const char * filename, mitk::Image* image, int t=0) { vtkXMLImageDataWriter * vtkwriter = vtkXMLImageDataWriter::New(); vtkwriter->SetFileName( filename ); vtkwriter->SetInput(image->GetVtkImageData(t)); vtkwriter->Write(); vtkwriter->Delete(); } #include void mitk::ImageWriter::WriteByITK(mitk::Image* image, const std::string& fileName) { // Pictures and picture series like .png are written via a different mechanism then volume images. // So, they are still multiplexed and thus not support vector images. if (fileName.find(".png") != std::string::npos || fileName.find(".tif") != std::string::npos || fileName.find(".jpg") != std::string::npos) { try { // switch processing of single/multi-component images if( image->GetPixelType(0).GetNumberOfComponents() == 1) { AccessByItk_1( image, _mitkItkPictureWrite, fileName ); } else { AccessFixedPixelTypeByItk_1( image, _mitkItkPictureWriteComposite, MITK_ACCESSBYITK_PIXEL_TYPES_SEQ MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES_SEQ , fileName); } } catch(itk::ExceptionObject &e) { std::cerr << "Caught " << e.what() << std::endl; } catch(std::exception &e) { std::cerr << "Caught std::exception " << e.what() << std::endl; } return; } // Implementation of writer using itkImageIO directly. This skips the use // of templated itkImageFileWriter, which saves the multiplexing on MITK side. unsigned int dimension = image->GetDimension(); unsigned int* dimensions = image->GetDimensions(); mitk::PixelType pixelType = image->GetPixelType(); mitk::Vector3D spacing = image->GetGeometry()->GetSpacing(); mitk::Point3D origin = image->GetGeometry()->GetOrigin(); itk::ImageIOBase::Pointer imageIO = itk::ImageIOFactory::CreateImageIO( fileName.c_str(), itk::ImageIOFactory::WriteMode ); if(imageIO.IsNull()) { itkExceptionMacro(<< "Error: Could not create itkImageIO via factory for file " << fileName); } // Set the necessary information for imageIO imageIO->SetNumberOfDimensions(dimension); imageIO->SetPixelTypeInfo( pixelType.GetTypeId() ); // Set also the PixelTypeIO information since it is available after // the changes in PixelType for Bug #12838 imageIO->SetPixelType( pixelType.GetPixelTypeId() ); if(pixelType.GetNumberOfComponents() > 1) imageIO->SetNumberOfComponents( pixelType.GetNumberOfComponents() ); itk::ImageIORegion ioRegion( dimension ); for(unsigned int i=0; iSetDimensions(i,dimensions[i]); imageIO->SetSpacing(i,spacing[i]); imageIO->SetOrigin(i,origin[i]); mitk::Vector3D direction; direction.Set_vnl_vector(image->GetGeometry()->GetIndexToWorldTransform()->GetMatrix().GetVnlMatrix().get_column(i)); vnl_vector< double > axisDirection(dimension); for(unsigned int j=0; jSetDirection( i, axisDirection ); ioRegion.SetSize(i, image->GetLargestPossibleRegion().GetSize(i) ); ioRegion.SetIndex(i, image->GetLargestPossibleRegion().GetIndex(i) ); } //use compression if available imageIO->UseCompressionOn(); imageIO->SetIORegion(ioRegion); imageIO->SetFileName(fileName); ImageReadAccessor imageAccess(image); imageIO->Write(imageAccess.GetData()); } void mitk::ImageWriter::GenerateData() { const std::string& locale = "C"; const std::string& currLocale = setlocale( LC_ALL, NULL ); if ( locale.compare(currLocale)!=0 ) { try { setlocale(LC_ALL, locale.c_str()); } catch(...) { MITK_INFO << "Could not set locale " << locale; } } if ( m_FileName == "" ) { itkWarningMacro( << "Sorry, filename has not been set!" ); return ; } FILE* tempFile = fopen(m_FileName.c_str(),"w"); if (tempFile==NULL) { itkExceptionMacro(<<"File location not writeable"); return; } fclose(tempFile); remove(m_FileName.c_str()); // Creating clone of input image, since i might change the geometry mitk::Image::Pointer input = const_cast(this->GetInput())->Clone(); // Check if geometry information will be lost if (input->GetDimension() == 2) { if (!input->GetGeometry()->Is2DConvertable()) { MITK_WARN << "Saving a 2D image with 3D geometry information. Geometry information will be lost! You might consider using Convert2Dto3DImageFilter before saving."; // set matrix to identity mitk::AffineTransform3D::Pointer affTrans = mitk::AffineTransform3D::New(); affTrans->SetIdentity(); mitk::Vector3D spacing = input->GetGeometry()->GetSpacing(); mitk::Point3D origin = input->GetGeometry()->GetOrigin(); input->GetGeometry()->SetIndexToWorldTransform(affTrans); input->GetGeometry()->SetSpacing(spacing); input->GetGeometry()->SetOrigin(origin); } } bool vti = (m_Extension.find(".vti") != std::string::npos); // If the extension is NOT .pic and NOT .nrrd and NOT .nii and NOT .nii.gz the following block is entered if ( m_Extension.find(".pic") == std::string::npos && m_Extension.find(".nrrd") == std::string::npos && m_Extension.find(".nii") == std::string::npos && m_Extension.find(".nii.gz") == std::string::npos ) { if(input->GetDimension() > 3) { int t, timesteps; timesteps = input->GetDimension(3); ImageTimeSelector::Pointer timeSelector = ImageTimeSelector::New(); timeSelector->SetInput(input); mitk::Image::Pointer image = timeSelector->GetOutput(); for(t = 0; t < timesteps; ++t) { ::itk::OStringStream filename; timeSelector->SetTimeNr(t); timeSelector->Update(); if(input->GetTimeGeometry()->IsValidTimeStep(t)) { const mitk::TimeBounds& timebounds = input->GetTimeGeometry()->GetGeometryForTimeStep(t)->GetTimeBounds(); filename << m_FileName.c_str() << "_S" << std::setprecision(0) << timebounds[0] << "_E" << std::setprecision(0) << timebounds[1] << "_T" << t << m_Extension; } else { - itkWarningMacro(<<"Error on write: TimeSlicedGeometry invalid of image " << filename << "."); + itkWarningMacro(<<"Error on write: TimeGeometry invalid of image " << filename << "."); filename << m_FileName.c_str() << "_T" << t << m_Extension; } if ( vti ) { writeVti(filename.str().c_str(), input, t); } else { WriteByITK(image, filename.str()); } } } else if ( vti ) { ::itk::OStringStream filename; filename << m_FileName.c_str() << m_Extension; writeVti(filename.str().c_str(), input); } else { ::itk::OStringStream filename; filename << m_FileName.c_str() << m_Extension; WriteByITK(input, filename.str()); } } else { // use the PicFileWriter for the .pic data type if( m_Extension.find(".pic") != std::string::npos ) { /* PicFileWriter::Pointer picWriter = PicFileWriter::New(); size_t found; found = m_FileName.find( m_Extension ); // !!! HAS to be at the very end of the filename (not somewhere in the middle) if( m_FileName.length() > 3 && found != m_FileName.length() - 4 ) { //if Extension not in Filename ::itk::OStringStream filename; filename << m_FileName.c_str() << m_Extension; picWriter->SetFileName( filename.str().c_str() ); } else { picWriter->SetFileName( m_FileName.c_str() ); } picWriter->SetInputImage( input ); picWriter->Write(); */ } // use the ITK .nrrd Image writer if( m_Extension.find(".nrrd") != std::string::npos || m_Extension.find(".nii") != std::string::npos || m_Extension.find(".nii.gz") != std::string::npos ) { ::itk::OStringStream filename; filename << this->m_FileName.c_str() << this->m_Extension; WriteByITK(input, filename.str()); } } m_MimeType = "application/MITK.Pic"; try { setlocale(LC_ALL, currLocale.c_str()); } catch(...) { MITK_INFO << "Could not reset locale " << currLocale; } } bool mitk::ImageWriter::CanWriteDataType( DataNode* input ) { if ( input ) { mitk::BaseData* data = input->GetData(); if ( data ) { mitk::Image::Pointer image = dynamic_cast( data ); if( image.IsNotNull() ) { //"SetDefaultExtension()" set m_Extension to ".mhd" ????? m_Extension = ".pic"; return true; } } } return false; } void mitk::ImageWriter::SetInput( DataNode* input ) { if( input && CanWriteDataType( input ) ) this->ProcessObject::SetNthInput( 0, dynamic_cast( input->GetData() ) ); } std::string mitk::ImageWriter::GetWritenMIMEType() { return m_MimeType; } std::vector mitk::ImageWriter::GetPossibleFileExtensions() { std::vector possibleFileExtensions; possibleFileExtensions.push_back(".pic"); possibleFileExtensions.push_back(".bmp"); possibleFileExtensions.push_back(".dcm"); possibleFileExtensions.push_back(".DCM"); possibleFileExtensions.push_back(".dicom"); possibleFileExtensions.push_back(".DICOM"); possibleFileExtensions.push_back(".gipl"); possibleFileExtensions.push_back(".gipl.gz"); possibleFileExtensions.push_back(".mha"); possibleFileExtensions.push_back(".nii"); possibleFileExtensions.push_back(".nrrd"); possibleFileExtensions.push_back(".nhdr"); possibleFileExtensions.push_back(".png"); possibleFileExtensions.push_back(".PNG"); possibleFileExtensions.push_back(".spr"); possibleFileExtensions.push_back(".mhd"); possibleFileExtensions.push_back(".vtk"); possibleFileExtensions.push_back(".vti"); possibleFileExtensions.push_back(".hdr"); possibleFileExtensions.push_back(".png"); possibleFileExtensions.push_back(".tif"); possibleFileExtensions.push_back(".jpg"); return possibleFileExtensions; } std::string mitk::ImageWriter::GetFileExtension() { return m_Extension; } void mitk::ImageWriter::SetInput( mitk::Image* image ) { this->ProcessObject::SetNthInput( 0, image ); } const mitk::Image* mitk::ImageWriter::GetInput() { if ( this->GetNumberOfInputs() < 1 ) { return NULL; } else { return static_cast< const mitk::Image * >( this->ProcessObject::GetInput( 0 ) ); } } diff --git a/Core/Code/IO/mitkItkImageFileReader.cpp b/Core/Code/IO/mitkItkImageFileReader.cpp index 6a0ed0cc8b..d4f22b537b 100644 --- a/Core/Code/IO/mitkItkImageFileReader.cpp +++ b/Core/Code/IO/mitkItkImageFileReader.cpp @@ -1,212 +1,212 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkItkImageFileReader.h" #include "mitkConfig.h" #include "mitkException.h" #include #include #include #include #include //#include #include #include #include //#include //#include //#include //#include //#include //#include void mitk::ItkImageFileReader::GenerateData() { const std::string& locale = "C"; const std::string& currLocale = setlocale( LC_ALL, NULL ); if ( locale.compare(currLocale)!=0 ) { try { setlocale(LC_ALL, locale.c_str()); } catch(...) { MITK_INFO << "Could not set locale " << locale; } } mitk::Image::Pointer image = this->GetOutput(); const unsigned int MINDIM = 2; const unsigned int MAXDIM = 4; MITK_INFO << "loading " << m_FileName << " via itk::ImageIOFactory... " << std::endl; // Check to see if we can read the file given the name or prefix if ( m_FileName == "" ) { mitkThrow() << "Empty filename in mitk::ItkImageFileReader "; return ; } itk::ImageIOBase::Pointer imageIO = itk::ImageIOFactory::CreateImageIO( m_FileName.c_str(), itk::ImageIOFactory::ReadMode ); if ( imageIO.IsNull() ) { //itkWarningMacro( << "File Type not supported!" ); mitkThrow() << "Could not create itk::ImageIOBase object for filename " << m_FileName; return ; } // Got to allocate space for the image. Determine the characteristics of // the image. imageIO->SetFileName( m_FileName.c_str() ); imageIO->ReadImageInformation(); unsigned int ndim = imageIO->GetNumberOfDimensions(); if ( ndim < MINDIM || ndim > MAXDIM ) { itkWarningMacro( << "Sorry, only dimensions 2, 3 and 4 are supported. The given file has " << ndim << " dimensions! Reading as 4D." ); ndim = MAXDIM; } itk::ImageIORegion ioRegion( ndim ); itk::ImageIORegion::SizeType ioSize = ioRegion.GetSize(); itk::ImageIORegion::IndexType ioStart = ioRegion.GetIndex(); unsigned int dimensions[ MAXDIM ]; dimensions[ 0 ] = 0; dimensions[ 1 ] = 0; dimensions[ 2 ] = 0; dimensions[ 3 ] = 0; float spacing[ MAXDIM ]; spacing[ 0 ] = 1.0f; spacing[ 1 ] = 1.0f; spacing[ 2 ] = 1.0f; spacing[ 3 ] = 1.0f; Point3D origin; origin.Fill(0); unsigned int i; for ( i = 0; i < ndim ; ++i ) { ioStart[ i ] = 0; ioSize[ i ] = imageIO->GetDimensions( i ); if(iGetDimensions( i ); spacing[ i ] = imageIO->GetSpacing( i ); if(spacing[ i ] <= 0) spacing[ i ] = 1.0f; } if(i<3) { origin[ i ] = imageIO->GetOrigin( i ); } } ioRegion.SetSize( ioSize ); ioRegion.SetIndex( ioStart ); MITK_INFO << "ioRegion: " << ioRegion << std::endl; imageIO->SetIORegion( ioRegion ); void* buffer = new unsigned char[imageIO->GetImageSizeInBytes()]; imageIO->Read( buffer ); mitk::PixelType pixelType = mitk::PixelType(imageIO->GetComponentTypeInfo(), imageIO->GetPixelType(), imageIO->GetComponentSize(), imageIO->GetNumberOfComponents(), imageIO->GetComponentTypeAsString( imageIO->GetComponentType() ).c_str(), imageIO->GetPixelTypeAsString( imageIO->GetPixelType() ).c_str() ); image->Initialize( pixelType, ndim, dimensions ); image->SetImportChannel( buffer, 0, Image::ManageMemory ); // access direction of itk::Image and include spacing mitk::Matrix3D matrix; matrix.SetIdentity(); unsigned int j, itkDimMax3 = (ndim >= 3? 3 : ndim); for ( i=0; i < itkDimMax3; ++i) for( j=0; j < itkDimMax3; ++j ) matrix[i][j] = imageIO->GetDirection(j)[i]; // re-initialize PlaneGeometry with origin and direction PlaneGeometry* planeGeometry = static_cast(image->GetSlicedGeometry(0)->GetGeometry2D(0)); planeGeometry->SetOrigin(origin); planeGeometry->GetIndexToWorldTransform()->SetMatrix(matrix); // re-initialize SlicedGeometry3D SlicedGeometry3D* slicedGeometry = image->GetSlicedGeometry(0); slicedGeometry->InitializeEvenlySpaced(planeGeometry, image->GetDimension(2)); slicedGeometry->SetSpacing(spacing); - // re-initialize TimeSlicedGeometry + // re-initialize TimeGeometry ProportionalTimeGeometry::Pointer timeGeometry = ProportionalTimeGeometry::New(); timeGeometry->Initialize(slicedGeometry, image->GetDimension(3)); image->SetTimeGeometry(timeGeometry); buffer = NULL; MITK_INFO << "number of image components: "<< image->GetPixelType().GetNumberOfComponents() << std::endl; // mitk::DataNode::Pointer node = this->GetOutput(); // node->SetData( image ); // add level-window property //if ( image->GetPixelType().GetNumberOfComponents() == 1 ) //{ // SetDefaultImageProperties( node ); //} MITK_INFO << "...finished!" << std::endl; try { setlocale(LC_ALL, currLocale.c_str()); } catch(...) { MITK_INFO << "Could not reset locale " << currLocale; } } bool mitk::ItkImageFileReader::CanReadFile(const std::string filename, const std::string filePrefix, const std::string filePattern) { // First check the extension if( filename == "" ) return false; // check if image is serie if( filePattern != "" && filePrefix != "" ) return false; itk::ImageIOBase::Pointer imageIO = itk::ImageIOFactory::CreateImageIO( filename.c_str(), itk::ImageIOFactory::ReadMode ); if ( imageIO.IsNull() ) return false; return true; } mitk::ItkImageFileReader::ItkImageFileReader() : m_FileName(""), m_FilePrefix(""), m_FilePattern("") { } mitk::ItkImageFileReader::~ItkImageFileReader() { } diff --git a/Core/Code/IO/mitkSurfaceVtkWriter.txx b/Core/Code/IO/mitkSurfaceVtkWriter.txx index 16b0678914..5849c4782f 100644 --- a/Core/Code/IO/mitkSurfaceVtkWriter.txx +++ b/Core/Code/IO/mitkSurfaceVtkWriter.txx @@ -1,174 +1,174 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkSurfaceVtkWriter.h" #include #include #include #include #include #include #include #include #include template mitk::SurfaceVtkWriter::SurfaceVtkWriter() : m_WriterWriteHasReturnValue( false ) { this->SetNumberOfRequiredInputs( 1 ); m_VtkWriter = vtkSmartPointer::New(); //enable to write ascii-formatted-file //m_VtkWriter->SetFileTypeToASCII(); SetDefaultExtension(); // and information about the Writer's Write() method } template mitk::SurfaceVtkWriter::~SurfaceVtkWriter() { } template void mitk::SurfaceVtkWriter::SetDefaultExtension() { m_Extension = ".vtk"; } template void mitk::SurfaceVtkWriter::ExecuteWrite( VtkWriterType* vtkWriter ) { if ( vtkWriter->Write() == 0 || vtkWriter->GetErrorCode() != 0 ) { itkExceptionMacro(<<"Error during surface writing: " << vtkErrorCode::GetStringFromErrorCode(vtkWriter->GetErrorCode()) ); } } template void mitk::SurfaceVtkWriter::GenerateData() { if ( m_FileName == "" ) { itkWarningMacro( << "Sorry, filename has not been set!" ); return ; } mitk::Surface::Pointer input = const_cast(this->GetInput()); vtkSmartPointer transformPolyData = vtkSmartPointer::New(); vtkPolyData * polyData; Geometry3D* geometry; unsigned int t, timesteps = input->GetTimeGeometry()->GetNumberOfTimeSteps(); for(t = 0; t < timesteps; ++t) { // surfaces do not have to exist in all timeteps; therefor, only write valid surfaces if( input->GetVtkPolyData(t) == NULL ) continue; ::itk::OStringStream filename; filename.imbue(::std::locale::classic()); geometry = input->GetGeometry(t); if ( timesteps > 1 ) { if(input->GetTimeGeometry()->IsValidTimeStep(t)) { const TimeBounds& timebounds = geometry->GetTimeBounds(); filename << m_FileName.c_str() << "_S" << std::setprecision(0) << timebounds[0] << "_E" << std::setprecision(0) << timebounds[1] << "_T" << t << m_Extension; } else { - itkWarningMacro(<<"Error on write: TimeSlicedGeometry invalid of surface " << filename << "."); + itkWarningMacro(<<"Error on write: TimeGeometry invalid of surface " << filename << "."); filename << m_FileName.c_str() << "_T" << t << m_Extension; } m_VtkWriter->SetFileName(filename.str().c_str()); } else m_VtkWriter->SetFileName(m_FileName.c_str()); geometry->TransferItkToVtkTransform(); transformPolyData->SetInput(input->GetVtkPolyData(t)); transformPolyData->SetTransform(geometry->GetVtkTransform()); transformPolyData->UpdateWholeExtent(); polyData = transformPolyData->GetOutput(); m_VtkWriter->SetInput(polyData); ExecuteWrite( m_VtkWriter ); } m_MimeType = "application/MITK.Surface"; } template void mitk::SurfaceVtkWriter::SetInput( mitk::Surface* surface ) { this->ProcessObject::SetNthInput( 0, surface ); } template const mitk::Surface* mitk::SurfaceVtkWriter::GetInput() { if ( this->GetNumberOfInputs() < 1 ) { return NULL; } else { return static_cast< const Surface * >( this->ProcessObject::GetInput( 0 ) ); } } template bool mitk::SurfaceVtkWriter::CanWriteDataType( DataNode* input ) { if ( input ) { BaseData* data = input->GetData(); if ( data ) { Surface::Pointer surface = dynamic_cast( data ); if( surface.IsNotNull() ) { SetDefaultExtension(); return true; } } } return false; } template void mitk::SurfaceVtkWriter::SetInput( DataNode* input ) { if( input && CanWriteDataType( input ) ) SetInput( dynamic_cast( input->GetData() ) ); } template std::string mitk::SurfaceVtkWriter::GetWritenMIMEType() { return m_MimeType; } template std::string mitk::SurfaceVtkWriter::GetFileExtension() { return m_Extension; } diff --git a/Core/Code/Rendering/mitkBaseRenderer.cpp b/Core/Code/Rendering/mitkBaseRenderer.cpp index 1cf310ccc1..bfee58e066 100644 --- a/Core/Code/Rendering/mitkBaseRenderer.cpp +++ b/Core/Code/Rendering/mitkBaseRenderer.cpp @@ -1,836 +1,848 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkBaseRenderer.h" #include "mitkMapper.h" #include "mitkResliceMethodProperty.h" #include "mitkKeyEvent.h" // Geometries #include "mitkPlaneGeometry.h" #include "mitkSlicedGeometry3D.h" // Controllers #include "mitkCameraController.h" #include "mitkSliceNavigationController.h" #include "mitkCameraRotationController.h" #include "mitkVtkInteractorCameraController.h" #ifdef MITK_USE_TD_MOUSE #include "mitkTDMouseVtkCameraController.h" #else #include "mitkCameraController.h" #endif #include "mitkVtkLayerController.h" // Events // TODO: INTERACTION_LEGACY #include "mitkEventMapper.h" #include "mitkGlobalInteraction.h" #include "mitkPositionEvent.h" #include "mitkDisplayPositionEvent.h" #include "mitkProperties.h" #include "mitkWeakPointerProperty.h" #include "mitkInteractionConst.h" // VTK #include #include #include #include #include #include #include mitk::BaseRenderer::BaseRendererMapType mitk::BaseRenderer::baseRendererMap; mitk::BaseRenderer* mitk::BaseRenderer::GetInstance(vtkRenderWindow * renWin) { for (BaseRendererMapType::iterator mapit = baseRendererMap.begin(); mapit != baseRendererMap.end(); mapit++) { if ((*mapit).first == renWin) return (*mapit).second; } return NULL; } void mitk::BaseRenderer::AddInstance(vtkRenderWindow* renWin, BaseRenderer* baseRenderer) { if (renWin == NULL || baseRenderer == NULL) return; // ensure that no BaseRenderer is managed twice mitk::BaseRenderer::RemoveInstance(renWin); baseRendererMap.insert(BaseRendererMapType::value_type(renWin, baseRenderer)); } void mitk::BaseRenderer::RemoveInstance(vtkRenderWindow* renWin) { BaseRendererMapType::iterator mapit = baseRendererMap.find(renWin); if (mapit != baseRendererMap.end()) baseRendererMap.erase(mapit); } mitk::BaseRenderer* mitk::BaseRenderer::GetByName(const std::string& name) { for (BaseRendererMapType::iterator mapit = baseRendererMap.begin(); mapit != baseRendererMap.end(); mapit++) { if ((*mapit).second->m_Name == name) return (*mapit).second; } return NULL; } vtkRenderWindow* mitk::BaseRenderer::GetRenderWindowByName(const std::string& name) { for (BaseRendererMapType::iterator mapit = baseRendererMap.begin(); mapit != baseRendererMap.end(); mapit++) { if ((*mapit).second->m_Name == name) return (*mapit).first; } return NULL; } mitk::BaseRenderer::BaseRenderer(const char* name, vtkRenderWindow * renWin, mitk::RenderingManager* rm) : m_RenderWindow(NULL), m_VtkRenderer(NULL), m_MapperID(defaultMapper), m_DataStorage(NULL), m_RenderingManager(rm), m_LastUpdateTime(0), m_CameraController( NULL), m_SliceNavigationController(NULL), m_CameraRotationController(NULL), /*m_Size(),*/ - m_Focused(false), m_WorldGeometry(NULL), m_TimeSlicedWorldGeometry(NULL), m_CurrentWorldGeometry(NULL), m_CurrentWorldGeometry2D(NULL), m_DisplayGeometry( + m_Focused(false), m_WorldGeometry(NULL), m_TimeWorldGeometry(NULL), m_CurrentWorldGeometry(NULL), m_CurrentWorldGeometry2D(NULL), m_DisplayGeometry( NULL), m_Slice(0), m_TimeStep(), m_CurrentWorldGeometry2DUpdateTime(), m_DisplayGeometryUpdateTime(), m_TimeStepUpdateTime(), m_WorldGeometryData( NULL), m_DisplayGeometryData(NULL), m_CurrentWorldGeometry2DData(NULL), m_WorldGeometryNode(NULL), m_DisplayGeometryNode(NULL), m_CurrentWorldGeometry2DNode( NULL), m_DisplayGeometryTransformTime(0), m_CurrentWorldGeometry2DTransformTime(0), m_Name(name), /*m_Bounds(),*/m_EmptyWorldGeometry( true), m_DepthPeelingEnabled(true), m_MaxNumberOfPeels(100), m_NumberOfVisibleLODEnabledMappers(0) { m_Bounds[0] = 0; m_Bounds[1] = 0; m_Bounds[2] = 0; m_Bounds[3] = 0; m_Bounds[4] = 0; m_Bounds[5] = 0; if (name != NULL) { m_Name = name; } else { m_Name = "unnamed renderer"; itkWarningMacro(<< "Created unnamed renderer. Bad for serialization. Please choose a name."); } if (renWin != NULL) { m_RenderWindow = renWin; m_RenderWindow->Register(NULL); } else { itkWarningMacro(<< "Created mitkBaseRenderer without vtkRenderWindow present."); } m_Size[0] = 0; m_Size[1] = 0; //instances.insert( this ); //adding this BaseRenderer to the List of all BaseRenderer // TODO: INTERACTION_LEGACY m_RenderingManager->GetGlobalInteraction()->AddFocusElement(this); m_BindDispatcherInteractor = new mitk::BindDispatcherInteractor(); WeakPointerProperty::Pointer rendererProp = WeakPointerProperty::New((itk::Object*) this); m_CurrentWorldGeometry2D = mitk::PlaneGeometry::New(); m_CurrentWorldGeometry2DData = mitk::Geometry2DData::New(); m_CurrentWorldGeometry2DData->SetGeometry2D(m_CurrentWorldGeometry2D); m_CurrentWorldGeometry2DNode = mitk::DataNode::New(); m_CurrentWorldGeometry2DNode->SetData(m_CurrentWorldGeometry2DData); m_CurrentWorldGeometry2DNode->GetPropertyList()->SetProperty("renderer", rendererProp); m_CurrentWorldGeometry2DNode->GetPropertyList()->SetProperty("layer", IntProperty::New(1000)); m_CurrentWorldGeometry2DNode->SetProperty("reslice.thickslices", mitk::ResliceMethodProperty::New()); m_CurrentWorldGeometry2DNode->SetProperty("reslice.thickslices.num", mitk::IntProperty::New(1)); m_CurrentWorldGeometry2DTransformTime = m_CurrentWorldGeometry2DNode->GetVtkTransform()->GetMTime(); m_DisplayGeometry = mitk::DisplayGeometry::New(); m_DisplayGeometry->SetWorldGeometry(m_CurrentWorldGeometry2D); m_DisplayGeometryData = mitk::Geometry2DData::New(); m_DisplayGeometryData->SetGeometry2D(m_DisplayGeometry); m_DisplayGeometryNode = mitk::DataNode::New(); m_DisplayGeometryNode->SetData(m_DisplayGeometryData); m_DisplayGeometryNode->GetPropertyList()->SetProperty("renderer", rendererProp); m_DisplayGeometryTransformTime = m_DisplayGeometryNode->GetVtkTransform()->GetMTime(); mitk::SliceNavigationController::Pointer sliceNavigationController = mitk::SliceNavigationController::New("navigation"); sliceNavigationController->SetRenderer(this); sliceNavigationController->ConnectGeometrySliceEvent(this); sliceNavigationController->ConnectGeometryUpdateEvent(this); sliceNavigationController->ConnectGeometryTimeEvent(this, false); m_SliceNavigationController = sliceNavigationController; m_CameraRotationController = mitk::CameraRotationController::New(); m_CameraRotationController->SetRenderWindow(m_RenderWindow); m_CameraRotationController->AcquireCamera(); //if TD Mouse Interaction is activated, then call TDMouseVtkCameraController instead of VtkInteractorCameraController #ifdef MITK_USE_TD_MOUSE m_CameraController = mitk::TDMouseVtkCameraController::New(); #else m_CameraController = mitk::CameraController::New(NULL); #endif m_VtkRenderer = vtkRenderer::New(); if (mitk::VtkLayerController::GetInstance(m_RenderWindow) == NULL) { mitk::VtkLayerController::AddInstance(m_RenderWindow, m_VtkRenderer); mitk::VtkLayerController::GetInstance(m_RenderWindow)->InsertSceneRenderer(m_VtkRenderer); } else mitk::VtkLayerController::GetInstance(m_RenderWindow)->InsertSceneRenderer(m_VtkRenderer); } mitk::BaseRenderer::~BaseRenderer() { if (m_VtkRenderer != NULL) { m_VtkRenderer->Delete(); m_VtkRenderer = NULL; } if (m_CameraController.IsNotNull()) m_CameraController->SetRenderer(NULL); m_RenderingManager->GetGlobalInteraction()->RemoveFocusElement(this); mitk::VtkLayerController::RemoveInstance(m_RenderWindow); RemoveAllLocalStorages(); m_DataStorage = NULL; if (m_BindDispatcherInteractor != NULL) { delete m_BindDispatcherInteractor; } if (m_RenderWindow != NULL) { m_RenderWindow->Delete(); m_RenderWindow = NULL; } } void mitk::BaseRenderer::RemoveAllLocalStorages() { this->InvokeEvent(mitk::BaseRenderer::RendererResetEvent()); std::list::iterator it; for (it = m_RegisteredLocalStorageHandlers.begin(); it != m_RegisteredLocalStorageHandlers.end(); it++) (*it)->ClearLocalStorage(this, false); m_RegisteredLocalStorageHandlers.clear(); } void mitk::BaseRenderer::RegisterLocalStorageHandler(mitk::BaseLocalStorageHandler *lsh) { m_RegisteredLocalStorageHandlers.push_back(lsh); } mitk::Dispatcher::Pointer mitk::BaseRenderer::GetDispatcher() const { return m_BindDispatcherInteractor->GetDispatcher(); } mitk::Point3D mitk::BaseRenderer::Map2DRendererPositionTo3DWorldPosition(Point2D* mousePosition) const { Point2D p_mm; Point3D position; if (m_MapperID == 1) { GetDisplayGeometry()->ULDisplayToDisplay(*mousePosition, *mousePosition); GetDisplayGeometry()->DisplayToWorld(*mousePosition, p_mm); GetDisplayGeometry()->Map(p_mm, position); } else if (m_MapperID == 2) { GetDisplayGeometry()->ULDisplayToDisplay(*mousePosition, *mousePosition); PickWorldPoint(*mousePosition, position); } return position; } void mitk::BaseRenderer::UnregisterLocalStorageHandler(mitk::BaseLocalStorageHandler *lsh) { m_RegisteredLocalStorageHandlers.remove(lsh); } void mitk::BaseRenderer::SetDataStorage(DataStorage* storage) { if (storage != NULL) { m_DataStorage = storage; m_BindDispatcherInteractor->SetDataStorage(m_DataStorage); this->Modified(); } } const mitk::BaseRenderer::MapperSlotId mitk::BaseRenderer::defaultMapper = 1; void mitk::BaseRenderer::Paint() { } void mitk::BaseRenderer::Initialize() { } void mitk::BaseRenderer::Resize(int w, int h) { m_Size[0] = w; m_Size[1] = h; if (m_CameraController) m_CameraController->Resize(w, h); //(formerly problematic on windows: vtkSizeBug) GetDisplayGeometry()->SetSizeInDisplayUnits(w, h); } void mitk::BaseRenderer::InitRenderer(vtkRenderWindow* renderwindow) { if (m_RenderWindow != NULL) { m_RenderWindow->Delete(); } m_RenderWindow = renderwindow; if (m_RenderWindow != NULL) { m_RenderWindow->Register(NULL); } RemoveAllLocalStorages(); if (m_CameraController.IsNotNull()) { m_CameraController->SetRenderer(this); } //BUG (#1551) added settings for depth peeling m_RenderWindow->SetAlphaBitPlanes(1); m_VtkRenderer->SetUseDepthPeeling(m_DepthPeelingEnabled); m_VtkRenderer->SetMaximumNumberOfPeels(m_MaxNumberOfPeels); m_VtkRenderer->SetOcclusionRatio(0.1); } void mitk::BaseRenderer::InitSize(int w, int h) { m_Size[0] = w; m_Size[1] = h; GetDisplayGeometry()->SetSizeInDisplayUnits(w, h, false); GetDisplayGeometry()->Fit(); } void mitk::BaseRenderer::SetSlice(unsigned int slice) { if (m_Slice != slice) { m_Slice = slice; - if (m_TimeSlicedWorldGeometry.IsNotNull()) + if (m_TimeWorldGeometry.IsNotNull()) { - SlicedGeometry3D* slicedWorldGeometry = dynamic_cast(m_TimeSlicedWorldGeometry->GetGeometry3D(m_TimeStep)); + SlicedGeometry3D* slicedWorldGeometry = dynamic_cast(m_TimeWorldGeometry->GetGeometryForTimeStep(m_TimeStep)); if (slicedWorldGeometry != NULL) { if (m_Slice >= slicedWorldGeometry->GetSlices()) m_Slice = slicedWorldGeometry->GetSlices() - 1; SetCurrentWorldGeometry2D(slicedWorldGeometry->GetGeometry2D(m_Slice)); SetCurrentWorldGeometry(slicedWorldGeometry); } } else Modified(); } } void mitk::BaseRenderer::SetTimeStep(unsigned int timeStep) { if (m_TimeStep != timeStep) { m_TimeStep = timeStep; m_TimeStepUpdateTime.Modified(); - if (m_TimeSlicedWorldGeometry.IsNotNull()) + if (m_TimeWorldGeometry.IsNotNull()) { - if (m_TimeStep >= m_TimeSlicedWorldGeometry->GetTimeSteps()) - m_TimeStep = m_TimeSlicedWorldGeometry->GetTimeSteps() - 1; - SlicedGeometry3D* slicedWorldGeometry = dynamic_cast(m_TimeSlicedWorldGeometry->GetGeometry3D(m_TimeStep)); + if (m_TimeStep >= m_TimeWorldGeometry->GetNumberOfTimeSteps()) + m_TimeStep = m_TimeWorldGeometry->GetNumberOfTimeSteps() - 1; + SlicedGeometry3D* slicedWorldGeometry = dynamic_cast(m_TimeWorldGeometry->GetGeometryForTimeStep(m_TimeStep)); if (slicedWorldGeometry != NULL) { SetCurrentWorldGeometry2D(slicedWorldGeometry->GetGeometry2D(m_Slice)); SetCurrentWorldGeometry(slicedWorldGeometry); } } else Modified(); } } int mitk::BaseRenderer::GetTimeStep(const mitk::BaseData* data) const { if ((data == NULL) || (data->IsInitialized() == false)) { return -1; } return data->GetTimeGeometry()->TimePointToTimeStep(GetTime()); } mitk::ScalarType mitk::BaseRenderer::GetTime() const { - if (m_TimeSlicedWorldGeometry.IsNull()) + if (m_TimeWorldGeometry.IsNull()) { return 0; } else { - ScalarType timeInMS = m_TimeSlicedWorldGeometry->TimeStepToMS(GetTimeStep()); + ScalarType timeInMS = m_TimeWorldGeometry->TimeStepToTimePoint(GetTimeStep()); if (timeInMS == ScalarTypeNumericTraits::NonpositiveMin()) return 0; else return timeInMS; } } -void mitk::BaseRenderer::SetWorldGeometry(mitk::Geometry3D* geometry) +void mitk::BaseRenderer::SetWorldTimeGeometry(mitk::TimeGeometry* geometry) { - itkDebugMacro("setting WorldGeometry to " << geometry); + assert(geometry != NULL); + + itkDebugMacro("setting WorldTimeGeometry to " << geometry); + if (m_TimeWorldGeometry != geometry) + { + if (geometry->GetBoundingBoxInWorld()->GetDiagonalLength2() == 0) + return; + + m_TimeWorldGeometry = geometry; + itkDebugMacro("setting TimeWorldGeometry to " << m_TimeWorldGeometry); + + if (m_TimeStep >= m_TimeWorldGeometry->GetNumberOfTimeSteps()) + m_TimeStep = m_TimeWorldGeometry->GetNumberOfTimeSteps() - 1; + + Geometry3D* geometry3d; + geometry3d = m_TimeWorldGeometry->GetGeometryForTimeStep(m_TimeStep); + SetWorldGeometry3D(geometry3d); + } +} + +void mitk::BaseRenderer::SetWorldGeometry3D(mitk::Geometry3D* geometry) +{ + itkDebugMacro("setting WorldGeometry3D to " << geometry); if (m_WorldGeometry != geometry) { if (geometry->GetBoundingBox()->GetDiagonalLength2() == 0) return; m_WorldGeometry = geometry; - m_TimeSlicedWorldGeometry = dynamic_cast(geometry); SlicedGeometry3D* slicedWorldGeometry; - if (m_TimeSlicedWorldGeometry.IsNotNull()) - { - itkDebugMacro("setting TimeSlicedWorldGeometry to " << m_TimeSlicedWorldGeometry); - if (m_TimeStep >= m_TimeSlicedWorldGeometry->GetTimeSteps()) - m_TimeStep = m_TimeSlicedWorldGeometry->GetTimeSteps() - 1; - slicedWorldGeometry = dynamic_cast(m_TimeSlicedWorldGeometry->GetGeometry3D(m_TimeStep)); - } - else - { - slicedWorldGeometry = dynamic_cast(geometry); - } + slicedWorldGeometry = dynamic_cast(geometry); + Geometry2D::Pointer geometry2d; if (slicedWorldGeometry != NULL) { if (m_Slice >= slicedWorldGeometry->GetSlices() && (m_Slice != 0)) m_Slice = slicedWorldGeometry->GetSlices() - 1; geometry2d = slicedWorldGeometry->GetGeometry2D(m_Slice); if (geometry2d.IsNull()) { PlaneGeometry::Pointer plane = mitk::PlaneGeometry::New(); plane->InitializeStandardPlane(slicedWorldGeometry); geometry2d = plane; } SetCurrentWorldGeometry(slicedWorldGeometry); } else { geometry2d = dynamic_cast(geometry); if (geometry2d.IsNull()) { PlaneGeometry::Pointer plane = PlaneGeometry::New(); plane->InitializeStandardPlane(geometry); geometry2d = plane; } SetCurrentWorldGeometry(geometry); } SetCurrentWorldGeometry2D(geometry2d); // calls Modified() } if (m_CurrentWorldGeometry2D.IsNull()) itkWarningMacro("m_CurrentWorldGeometry2D is NULL"); } void mitk::BaseRenderer::SetDisplayGeometry(mitk::DisplayGeometry* geometry2d) { itkDebugMacro("setting DisplayGeometry to " << geometry2d); if (m_DisplayGeometry != geometry2d) { m_DisplayGeometry = geometry2d; m_DisplayGeometryData->SetGeometry2D(m_DisplayGeometry); m_DisplayGeometryUpdateTime.Modified(); Modified(); } } void mitk::BaseRenderer::SetCurrentWorldGeometry2D(mitk::Geometry2D* geometry2d) { if (m_CurrentWorldGeometry2D != geometry2d) { m_CurrentWorldGeometry2D = geometry2d; m_CurrentWorldGeometry2DData->SetGeometry2D(m_CurrentWorldGeometry2D); m_DisplayGeometry->SetWorldGeometry(m_CurrentWorldGeometry2D); m_CurrentWorldGeometry2DUpdateTime.Modified(); Modified(); } } void mitk::BaseRenderer::SendUpdateSlice() { m_DisplayGeometryUpdateTime.Modified(); m_CurrentWorldGeometry2DUpdateTime.Modified(); } void mitk::BaseRenderer::SetCurrentWorldGeometry(mitk::Geometry3D* geometry) { m_CurrentWorldGeometry = geometry; if (geometry == NULL) { m_Bounds[0] = 0; m_Bounds[1] = 0; m_Bounds[2] = 0; m_Bounds[3] = 0; m_Bounds[4] = 0; m_Bounds[5] = 0; m_EmptyWorldGeometry = true; return; } BoundingBox::Pointer boundingBox = m_CurrentWorldGeometry->CalculateBoundingBoxRelativeToTransform(NULL); const BoundingBox::BoundsArrayType& worldBounds = boundingBox->GetBounds(); m_Bounds[0] = worldBounds[0]; m_Bounds[1] = worldBounds[1]; m_Bounds[2] = worldBounds[2]; m_Bounds[3] = worldBounds[3]; m_Bounds[4] = worldBounds[4]; m_Bounds[5] = worldBounds[5]; if (boundingBox->GetDiagonalLength2() <= mitk::eps) m_EmptyWorldGeometry = true; else m_EmptyWorldGeometry = false; } void mitk::BaseRenderer::SetGeometry(const itk::EventObject & geometrySendEvent) { const SliceNavigationController::GeometrySendEvent* sendEvent = dynamic_cast(&geometrySendEvent); assert(sendEvent!=NULL); - SetWorldGeometry(sendEvent->GetTimeSlicedGeometry()); + SetWorldTimeGeometry(sendEvent->GetTimeGeometry()); } void mitk::BaseRenderer::UpdateGeometry(const itk::EventObject & geometryUpdateEvent) { const SliceNavigationController::GeometryUpdateEvent* updateEvent = dynamic_cast(&geometryUpdateEvent); if (updateEvent == NULL) return; if (m_CurrentWorldGeometry.IsNotNull()) { SlicedGeometry3D* slicedWorldGeometry = dynamic_cast(m_CurrentWorldGeometry.GetPointer()); if (slicedWorldGeometry) { Geometry2D* geometry2D = slicedWorldGeometry->GetGeometry2D(m_Slice); SetCurrentWorldGeometry2D(geometry2D); // calls Modified() } } } void mitk::BaseRenderer::SetGeometrySlice(const itk::EventObject & geometrySliceEvent) { const SliceNavigationController::GeometrySliceEvent* sliceEvent = dynamic_cast(&geometrySliceEvent); assert(sliceEvent!=NULL); SetSlice(sliceEvent->GetPos()); } void mitk::BaseRenderer::SetGeometryTime(const itk::EventObject & geometryTimeEvent) { const SliceNavigationController::GeometryTimeEvent * timeEvent = dynamic_cast(&geometryTimeEvent); assert(timeEvent!=NULL); SetTimeStep(timeEvent->GetPos()); } const double* mitk::BaseRenderer::GetBounds() const { return m_Bounds; } void mitk::BaseRenderer::MousePressEvent(mitk::MouseEvent *me) { //set the Focus on the renderer /*bool success =*/m_RenderingManager->GetGlobalInteraction()->SetFocus(this); /* if (! success) mitk::StatusBar::GetInstance()->DisplayText("Warning! from mitkBaseRenderer.cpp: Couldn't focus this BaseRenderer!"); */ //if (m_CameraController) //{ // if(me->GetButtonState()!=512) // provisorisch: Ctrl nicht durchlassen. Bald wird aus m_CameraController eine StateMachine // m_CameraController->MousePressEvent(me); //} if (m_MapperID == 1) { Point2D p(me->GetDisplayPosition()); Point2D p_mm; Point3D position; GetDisplayGeometry()->ULDisplayToDisplay(p, p); GetDisplayGeometry()->DisplayToWorld(p, p_mm); GetDisplayGeometry()->Map(p_mm, position); mitk::PositionEvent event(this, me->GetType(), me->GetButton(), me->GetButtonState(), mitk::Key_unknown, p, position); mitk::EventMapper::MapEvent(&event, m_RenderingManager->GetGlobalInteraction()); } else if (m_MapperID > 1) //==2 for 3D and ==5 for stencil { Point2D p(me->GetDisplayPosition()); GetDisplayGeometry()->ULDisplayToDisplay(p, p); me->SetDisplayPosition(p); mitk::EventMapper::MapEvent(me, m_RenderingManager->GetGlobalInteraction()); } } void mitk::BaseRenderer::MouseReleaseEvent(mitk::MouseEvent *me) { //if (m_CameraController) //{ // if(me->GetButtonState()!=512) // provisorisch: Ctrl nicht durchlassen. Bald wird aus m_CameraController eine StateMachine // m_CameraController->MouseReleaseEvent(me); //} if (m_MapperID == 1) { Point2D p(me->GetDisplayPosition()); Point2D p_mm; Point3D position; GetDisplayGeometry()->ULDisplayToDisplay(p, p); GetDisplayGeometry()->DisplayToWorld(p, p_mm); GetDisplayGeometry()->Map(p_mm, position); mitk::PositionEvent event(this, me->GetType(), me->GetButton(), me->GetButtonState(), mitk::Key_unknown, p, position); mitk::EventMapper::MapEvent(&event, m_RenderingManager->GetGlobalInteraction()); } else if (m_MapperID == 2) { Point2D p(me->GetDisplayPosition()); GetDisplayGeometry()->ULDisplayToDisplay(p, p); me->SetDisplayPosition(p); mitk::EventMapper::MapEvent(me, m_RenderingManager->GetGlobalInteraction()); } } void mitk::BaseRenderer::MouseMoveEvent(mitk::MouseEvent *me) { //if (m_CameraController) //{ // if((me->GetButtonState()<=512) || (me->GetButtonState()>=516))// provisorisch: Ctrl nicht durchlassen. Bald wird aus m_CameraController eine StateMachine // m_CameraController->MouseMoveEvent(me); //} if (m_MapperID == 1) { Point2D p(me->GetDisplayPosition()); Point2D p_mm; Point3D position; GetDisplayGeometry()->ULDisplayToDisplay(p, p); GetDisplayGeometry()->DisplayToWorld(p, p_mm); GetDisplayGeometry()->Map(p_mm, position); mitk::PositionEvent event(this, me->GetType(), me->GetButton(), me->GetButtonState(), mitk::Key_unknown, p, position); mitk::EventMapper::MapEvent(&event, m_RenderingManager->GetGlobalInteraction()); } else if (m_MapperID == 2) { Point2D p(me->GetDisplayPosition()); GetDisplayGeometry()->ULDisplayToDisplay(p, p); me->SetDisplayPosition(p); mitk::EventMapper::MapEvent(me, m_RenderingManager->GetGlobalInteraction()); } } void mitk::BaseRenderer::PickWorldPoint(const mitk::Point2D& displayPoint, mitk::Point3D& worldPoint) const { mitk::Point2D worldPoint2D; GetDisplayGeometry()->DisplayToWorld(displayPoint, worldPoint2D); GetDisplayGeometry()->Map(worldPoint2D, worldPoint); } void mitk::BaseRenderer::WheelEvent(mitk::WheelEvent * we) { if (m_MapperID == 1) { Point2D p(we->GetDisplayPosition()); Point2D p_mm; Point3D position; GetDisplayGeometry()->ULDisplayToDisplay(p, p); GetDisplayGeometry()->DisplayToWorld(p, p_mm); GetDisplayGeometry()->Map(p_mm, position); mitk::PositionEvent event(this, we->GetType(), we->GetButton(), we->GetButtonState(), mitk::Key_unknown, p, position); mitk::EventMapper::MapEvent(we, m_RenderingManager->GetGlobalInteraction()); mitk::EventMapper::MapEvent(&event, m_RenderingManager->GetGlobalInteraction()); } else if (m_MapperID == 2) { Point2D p(we->GetDisplayPosition()); GetDisplayGeometry()->ULDisplayToDisplay(p, p); we->SetDisplayPosition(p); mitk::EventMapper::MapEvent(we, m_RenderingManager->GetGlobalInteraction()); } } void mitk::BaseRenderer::KeyPressEvent(mitk::KeyEvent *ke) { if (m_MapperID == 1) { Point2D p(ke->GetDisplayPosition()); Point2D p_mm; Point3D position; GetDisplayGeometry()->ULDisplayToDisplay(p, p); GetDisplayGeometry()->DisplayToWorld(p, p_mm); GetDisplayGeometry()->Map(p_mm, position); mitk::KeyEvent event(this, ke->GetType(), ke->GetButton(), ke->GetButtonState(), ke->GetKey(), ke->GetText(), p); mitk::EventMapper::MapEvent(&event, m_RenderingManager->GetGlobalInteraction()); } else if (m_MapperID == 2) { Point2D p(ke->GetDisplayPosition()); GetDisplayGeometry()->ULDisplayToDisplay(p, p); ke->SetDisplayPosition(p); mitk::EventMapper::MapEvent(ke, m_RenderingManager->GetGlobalInteraction()); } } void mitk::BaseRenderer::DrawOverlayMouse(mitk::Point2D& itkNotUsed(p2d)) { MITK_INFO<<"BaseRenderer::DrawOverlayMouse()- should be inconcret implementation OpenGLRenderer."<RequestUpdate(this->m_RenderWindow); } void mitk::BaseRenderer::ForceImmediateUpdate() { m_RenderingManager->ForceImmediateUpdate(this->m_RenderWindow); } unsigned int mitk::BaseRenderer::GetNumberOfVisibleLODEnabledMappers() const { return m_NumberOfVisibleLODEnabledMappers; } mitk::RenderingManager* mitk::BaseRenderer::GetRenderingManager() const { return m_RenderingManager.GetPointer(); } /*! Sets the new Navigation controller */ void mitk::BaseRenderer::SetSliceNavigationController(mitk::SliceNavigationController *SlicenavigationController) { if (SlicenavigationController == NULL) return; //disconnect old from globalinteraction m_RenderingManager->GetGlobalInteraction()->RemoveListener(SlicenavigationController); //copy worldgeometry - SlicenavigationController->SetInputWorldGeometry(SlicenavigationController->GetCreatedWorldGeometry()); + SlicenavigationController->SetInputWorldTimeGeometry(SlicenavigationController->GetCreatedWorldGeometry()); SlicenavigationController->Update(); //set new m_SliceNavigationController = SlicenavigationController; m_SliceNavigationController->SetRenderer(this); if (m_SliceNavigationController.IsNotNull()) { m_SliceNavigationController->ConnectGeometrySliceEvent(this); m_SliceNavigationController->ConnectGeometryUpdateEvent(this); m_SliceNavigationController->ConnectGeometryTimeEvent(this, false); } } /*! Sets the new camera controller and deletes the vtkRenderWindowInteractor in case of the VTKInteractorCameraController */ void mitk::BaseRenderer::SetCameraController(CameraController* cameraController) { mitk::VtkInteractorCameraController::Pointer vtkInteractorCameraController = dynamic_cast(cameraController); if (vtkInteractorCameraController.IsNotNull()) MITK_INFO<<"!!!WARNING!!!: RenderWindow interaction events are no longer handled via CameraController (See Bug #954)."<SetRenderer(NULL); m_CameraController = NULL; m_CameraController = cameraController; m_CameraController->SetRenderer(this); } void mitk::BaseRenderer::PrintSelf(std::ostream& os, itk::Indent indent) const { os << indent << " MapperID: " << m_MapperID << std::endl; os << indent << " Slice: " << m_Slice << std::endl; os << indent << " TimeStep: " << m_TimeStep << std::endl; os << indent << " WorldGeometry: "; if (m_WorldGeometry.IsNull()) os << "NULL" << std::endl; else m_WorldGeometry->Print(os, indent); os << indent << " CurrentWorldGeometry2D: "; if (m_CurrentWorldGeometry2D.IsNull()) os << "NULL" << std::endl; else m_CurrentWorldGeometry2D->Print(os, indent); os << indent << " CurrentWorldGeometry2DUpdateTime: " << m_CurrentWorldGeometry2DUpdateTime << std::endl; os << indent << " CurrentWorldGeometry2DTransformTime: " << m_CurrentWorldGeometry2DTransformTime << std::endl; os << indent << " DisplayGeometry: "; if (m_DisplayGeometry.IsNull()) os << "NULL" << std::endl; else m_DisplayGeometry->Print(os, indent); os << indent << " DisplayGeometryTransformTime: " << m_DisplayGeometryTransformTime << std::endl; Superclass::PrintSelf(os, indent); } void mitk::BaseRenderer::SetDepthPeelingEnabled(bool enabled) { m_DepthPeelingEnabled = enabled; m_VtkRenderer->SetUseDepthPeeling(enabled); } void mitk::BaseRenderer::SetMaxNumberOfPeels(int maxNumber) { m_MaxNumberOfPeels = maxNumber; m_VtkRenderer->SetMaximumNumberOfPeels(maxNumber); } diff --git a/Core/Code/Rendering/mitkBaseRenderer.h b/Core/Code/Rendering/mitkBaseRenderer.h index be2274f90e..4d057245e2 100644 --- a/Core/Code/Rendering/mitkBaseRenderer.h +++ b/Core/Code/Rendering/mitkBaseRenderer.h @@ -1,611 +1,615 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #ifndef BASERENDERER_H_HEADER_INCLUDED_C1CCA0F4 #define BASERENDERER_H_HEADER_INCLUDED_C1CCA0F4 #include "mitkDataStorage.h" #include "mitkGeometry2D.h" -#include "mitkTimeSlicedGeometry.h" +#include "mitkTimeGeometry.h" #include "mitkDisplayGeometry.h" #include "mitkGeometry2DData.h" #include "mitkCameraController.h" #include "mitkDisplayPositionEvent.h" #include "mitkWheelEvent.h" //#include "mitkMapper.h" #include "mitkSliceNavigationController.h" #include "mitkCameraController.h" #include "mitkCameraRotationController.h" #include "mitkBindDispatcherInteractor.h" #include "mitkDispatcher.h" #include #include #include #include namespace mitk { class NavigationController; class SliceNavigationController; class CameraRotationController; class CameraController; class DataStorage; class Mapper; class BaseLocalStorageHandler; //##Documentation //## @brief Organizes the rendering process //## //## Organizes the rendering process. A Renderer contains a reference to a //## DataStorage and asks the mappers of the data objects to render //## the data into the renderwindow it is associated to. //## //## \#Render() checks if rendering is currently allowed by calling //## RenderWindow::PrepareRendering(). Initialization of a rendering context //## can also be performed in this method. //## //## The actual rendering code has been moved to \#Repaint() //## Both \#Repaint() and \#Update() are declared protected now. //## //## Note: Separation of the Repaint and Update processes (rendering vs //## creating a vtk prop tree) still needs to be worked on. The whole //## rendering process also should be reworked to use VTK based classes for //## both 2D and 3D rendering. //## @ingroup Renderer class MITK_CORE_EXPORT BaseRenderer: public itk::Object { public: typedef std::map BaseRendererMapType; static BaseRendererMapType baseRendererMap; static BaseRenderer* GetInstance(vtkRenderWindow * renWin); static void AddInstance(vtkRenderWindow* renWin, BaseRenderer* baseRenderer); static void RemoveInstance(vtkRenderWindow* renWin); static BaseRenderer* GetByName(const std::string& name); static vtkRenderWindow* GetRenderWindowByName(const std::string& name); #pragma GCC visibility push(default) itkEventMacro( RendererResetEvent, itk::AnyEvent ); #pragma GCC visibility pop /** Standard class typedefs. */ mitkClassMacro(BaseRenderer, itk::Object); BaseRenderer(const char* name = NULL, vtkRenderWindow * renWin = NULL, mitk::RenderingManager* rm = NULL); //##Documentation //## @brief MapperSlotId defines which kind of mapper (e.g., 2D or 3D) shoud be used. typedef int MapperSlotId; enum StandardMapperSlot { Standard2D = 1, Standard3D = 2 }; virtual void SetDataStorage(DataStorage* storage); ///< set the datastorage that will be used for rendering //##Documentation //## return the DataStorage that is used for rendering virtual DataStorage::Pointer GetDataStorage() const { return m_DataStorage.GetPointer(); } //##Documentation //## @brief Access the RenderWindow into which this renderer renders. vtkRenderWindow* GetRenderWindow() const { return m_RenderWindow; } vtkRenderer* GetVtkRenderer() const { return m_VtkRenderer; } //##Documentation //## @brief Returns the Dispatcher which handles Events for this BaseRenderer Dispatcher::Pointer GetDispatcher() const; //##Documentation //## @brief Default mapper id to use. static const MapperSlotId defaultMapper; //##Documentation //## @brief Do the rendering and flush the result. virtual void Paint(); //##Documentation //## @brief Initialize the RenderWindow. Should only be called from RenderWindow. virtual void Initialize(); //##Documentation //## @brief Called to inform the renderer that the RenderWindow has been resized. virtual void Resize(int w, int h); //##Documentation //## @brief Initialize the renderer with a RenderWindow (@a renderwindow). virtual void InitRenderer(vtkRenderWindow* renderwindow); //##Documentation //## @brief Set the initial size. Called by RenderWindow after it has become //## visible for the first time. virtual void InitSize(int w, int h); //##Documentation //## @brief Draws a point on the widget. //## Should be used during conferences to show the position of the remote mouse virtual void DrawOverlayMouse(Point2D& p2d); //##Documentation //## @brief Set/Get the WorldGeometry (m_WorldGeometry) for 3D and 2D rendering, that describing the //## (maximal) area to be rendered. //## //## Depending of the type of the passed Geometry3D more or less information can be extracted: //## \li if it is a Geometry2D (which is a sub-class of Geometry3D), m_CurrentWorldGeometry2D is - //## also set to point to it. m_TimeSlicedWorldGeometry is set to NULL. - //## \li if it is a TimeSlicedGeometry, m_TimeSlicedWorldGeometry is also set to point to it. - //## If m_TimeSlicedWorldGeometry contains instances of SlicedGeometry3D, m_CurrentWorldGeometry2D is set to + //## also set to point to it. m_TimeWorldGeometry is set to NULL. + //## \li if it is a TimeGeometry, m_TimeWorldGeometry is also set to point to it. + //## If m_TimeWorldGeometry contains instances of SlicedGeometry3D, m_CurrentWorldGeometry2D is set to //## one of geometries stored in the SlicedGeometry3D according to the value of m_Slice; otherwise //## a PlaneGeometry describing the top of the bounding-box of the Geometry3D is set as the //## m_CurrentWorldGeometry2D. //## \li otherwise a PlaneGeometry describing the top of the bounding-box of the Geometry3D - //## is set as the m_CurrentWorldGeometry2D. m_TimeSlicedWorldGeometry is set to NULL. + //## is set as the m_CurrentWorldGeometry2D. m_TimeWorldGeometry is set to NULL. //## @todo add calculation of PlaneGeometry describing the top of the bounding-box of the Geometry3D //## when the passed Geometry3D is not sliced. //## \sa m_WorldGeometry - //## \sa m_TimeSlicedWorldGeometry + //## \sa m_TimeWorldGeometry //## \sa m_CurrentWorldGeometry2D - virtual void SetWorldGeometry(Geometry3D* geometry); + + //TODO_GOETZ Comment on both methods what they actually doing and rename them to the same again + virtual void SetWorldGeometry3D(Geometry3D* geometry); + virtual void SetWorldTimeGeometry(mitk::TimeGeometry* geometry); + itkGetConstObjectMacro(WorldGeometry, Geometry3D) //##Documentation //## @brief Get the current 3D-worldgeometry (m_CurrentWorldGeometry) used for 3D-rendering itkGetConstObjectMacro(CurrentWorldGeometry, Geometry3D) //##Documentation //## @brief Get the current 2D-worldgeometry (m_CurrentWorldGeometry2D) used for 2D-rendering itkGetConstObjectMacro(CurrentWorldGeometry2D, Geometry2D) //##Documentation //## Calculates the bounds of the DataStorage (if it contains any valid data), //## creates a geometry from these bounds and sets it as world geometry of the renderer. //## //## Call this method to re-initialize the renderer to the current DataStorage //## (e.g. after loading an additional dataset), to ensure that the view is //## aligned correctly. //## \warn This is not implemented yet. virtual bool SetWorldGeometryToDataStorageBounds() { return false; } //##Documentation //## @brief Set/Get the DisplayGeometry (for 2D rendering) //## //## The DisplayGeometry describes which part of the Geometry2D m_CurrentWorldGeometry2D //## is displayed. virtual void SetDisplayGeometry(DisplayGeometry* geometry2d); itkGetConstObjectMacro(DisplayGeometry, DisplayGeometry) itkGetObjectMacro(DisplayGeometry, DisplayGeometry) //##Documentation //## @brief Set/Get m_Slice which defines together with m_TimeStep the 2D geometry - //## stored in m_TimeSlicedWorldGeometry used as m_CurrentWorldGeometry2D + //## stored in m_TimeWorldGeometry used as m_CurrentWorldGeometry2D //## //## \sa m_Slice virtual void SetSlice(unsigned int slice); itkGetConstMacro(Slice, unsigned int) //##Documentation //## @brief Set/Get m_TimeStep which defines together with m_Slice the 2D geometry - //## stored in m_TimeSlicedWorldGeometry used as m_CurrentWorldGeometry2D + //## stored in m_TimeWorldGeometry used as m_CurrentWorldGeometry2D //## //## \sa m_TimeStep virtual void SetTimeStep(unsigned int timeStep); itkGetConstMacro(TimeStep, unsigned int) //##Documentation //## @brief Get the time-step of a BaseData object which //## exists at the time of the currently displayed content //## //## Returns -1 or mitk::BaseData::m_TimeSteps if there //## is no data at the current time. //## \sa GetTimeStep, m_TimeStep int GetTimeStep(const BaseData* data) const; //##Documentation //## @brief Get the time in ms of the currently displayed content //## //## \sa GetTimeStep, m_TimeStep ScalarType GetTime() const; //##Documentation //## @brief SetWorldGeometry is called according to the geometrySliceEvent, //## which is supposed to be a SliceNavigationController::GeometrySendEvent virtual void SetGeometry(const itk::EventObject & geometrySliceEvent); //##Documentation //## @brief UpdateWorldGeometry is called to re-read the 2D geometry from the //## slice navigation controller virtual void UpdateGeometry(const itk::EventObject & geometrySliceEvent); //##Documentation //## @brief SetSlice is called according to the geometrySliceEvent, //## which is supposed to be a SliceNavigationController::GeometrySliceEvent virtual void SetGeometrySlice(const itk::EventObject & geometrySliceEvent); //##Documentation //## @brief SetTimeStep is called according to the geometrySliceEvent, //## which is supposed to be a SliceNavigationController::GeometryTimeEvent virtual void SetGeometryTime(const itk::EventObject & geometryTimeEvent); //##Documentation //## @brief Get a data object containing the DisplayGeometry (for 2D rendering) itkGetObjectMacro(DisplayGeometryData, Geometry2DData) //##Documentation //## @brief Get a data object containing the WorldGeometry (for 2D rendering) itkGetObjectMacro(WorldGeometryData, Geometry2DData) //##Documentation //## @brief Get a DataNode pointing to a data object containing the WorldGeometry (3D and 2D rendering) itkGetObjectMacro(WorldGeometryNode, DataNode) //##Documentation //## @brief Get a DataNode pointing to a data object containing the DisplayGeometry (for 2D rendering) itkGetObjectMacro(DisplayGeometryNode, DataNode) //##Documentation //## @brief Get a DataNode pointing to a data object containing the current 2D-worldgeometry m_CurrentWorldGeometry2D (for 2D rendering) itkGetObjectMacro(CurrentWorldGeometry2DNode, DataNode) //##Documentation //## @brief Sets timestamp of CurrentWorldGeometry2D and DisplayGeometry and forces so reslicing in that renderwindow void SendUpdateSlice(); //##Documentation //## @brief Get timestamp of last call of SetCurrentWorldGeometry2D unsigned long GetCurrentWorldGeometry2DUpdateTime() { return m_CurrentWorldGeometry2DUpdateTime; } //##Documentation //## @brief Get timestamp of last call of SetDisplayGeometry unsigned long GetDisplayGeometryUpdateTime() { return m_CurrentWorldGeometry2DUpdateTime; } //##Documentation //## @brief Get timestamp of last change of current TimeStep unsigned long GetTimeStepUpdateTime() { return m_TimeStepUpdateTime; } //##Documentation //## @brief Perform a picking: find the x,y,z world coordinate of a //## display x,y coordinate. //## @warning Has to be overwritten in subclasses for the 3D-case. //## //## Implemented here only for 2D-rendering by using //## m_DisplayGeometry virtual void PickWorldPoint(const Point2D& diplayPosition, Point3D& worldPosition) const; /** \brief Determines the object (mitk::DataNode) closest to the current * position by means of picking * * \warning Implementation currently empty for 2D rendering; intended to be * implemented for 3D renderers */ virtual DataNode* PickObject(const Point2D& /*displayPosition*/, Point3D& /*worldPosition*/) const { return NULL; } //##Documentation //## @brief Get the MapperSlotId to use. itkGetMacro(MapperID, MapperSlotId) itkGetConstMacro(MapperID, MapperSlotId) //##Documentation //## @brief Set the MapperSlotId to use. itkSetMacro(MapperID, MapperSlotId) //##Documentation //## @brief Has the renderer the focus? itkGetMacro(Focused, bool) //##Documentation //## @brief Tell the renderer that it is focused. The caller is responsible for focus management, //## not the renderer itself. itkSetMacro(Focused, bool) //##Documentation //## @brief Sets whether depth peeling is enabled or not void SetDepthPeelingEnabled(bool enabled); //##Documentation //## @brief Sets maximal number of peels void SetMaxNumberOfPeels(int maxNumber); itkGetMacro(Size, int*) void SetSliceNavigationController(SliceNavigationController* SlicenavigationController); void SetCameraController(CameraController* cameraController); itkGetObjectMacro(CameraController, CameraController) itkGetObjectMacro(SliceNavigationController, SliceNavigationController) itkGetObjectMacro(CameraRotationController, CameraRotationController) itkGetMacro(EmptyWorldGeometry, bool) //##Documentation //## @brief Mouse event dispatchers //## @note for internal use only. preliminary. virtual void MousePressEvent(MouseEvent*); //##Documentation //## @brief Mouse event dispatchers //## @note for internal use only. preliminary. virtual void MouseReleaseEvent(MouseEvent*); //##Documentation //## @brief Mouse event dispatchers //## @note for internal use only. preliminary. virtual void MouseMoveEvent(MouseEvent*); //##Documentation //## @brief Wheel event dispatcher //## @note for internal use only. preliminary. virtual void WheelEvent(mitk::WheelEvent* we); //##Documentation //## @brief Key event dispatcher //## @note for internal use only. preliminary. virtual void KeyPressEvent(KeyEvent*); //##Documentation //## @brief get the name of the Renderer //## @note const char * GetName() const { return m_Name.c_str(); } //##Documentation //## @brief get the x_size of the RendererWindow //## @note int GetSizeX() const { return m_Size[0]; } //##Documentation //## @brief get the y_size of the RendererWindow //## @note int GetSizeY() const { return m_Size[1]; } const double* GetBounds() const; void RequestUpdate(); void ForceImmediateUpdate(); /** Returns number of mappers which are visible and have level-of-detail * rendering enabled */ unsigned int GetNumberOfVisibleLODEnabledMappers() const; ///** //* \brief Setter for the RenderingManager that handles this instance of BaseRenderer //*/ //void SetRenderingManager( mitk::RenderingManager* ); /** * \brief Getter for the RenderingManager that handles this instance of BaseRenderer */ virtual mitk::RenderingManager* GetRenderingManager() const; /** * \brief Provides (1) world coordinates for a given mouse position and (2) * translates mousePosition to Display coordinates */ virtual Point3D Map2DRendererPositionTo3DWorldPosition(Point2D* mousePosition) const; protected: virtual ~BaseRenderer(); //##Documentation //## @brief Call update of all mappers. To be implemented in subclasses. virtual void Update() = 0; vtkRenderWindow* m_RenderWindow; vtkRenderer* m_VtkRenderer; //##Documentation //## @brief MapperSlotId to use. Defines which kind of mapper (e.g., 2D or 3D) shoud be used. MapperSlotId m_MapperID; //##Documentation //## @brief The DataStorage that is used for rendering. DataStorage::Pointer m_DataStorage; //##Documentation //## @brief The RenderingManager that manages this instance RenderingManager::Pointer m_RenderingManager; //##Documentation //## @brief Timestamp of last call of Update(). unsigned long m_LastUpdateTime; //##Documentation //## @brief CameraController for 3D rendering //## @note preliminary. CameraController::Pointer m_CameraController; SliceNavigationController::Pointer m_SliceNavigationController; CameraRotationController::Pointer m_CameraRotationController; //##Documentation //## @brief Size of the RenderWindow. int m_Size[2]; //##Documentation //## @brief Contains whether the renderer that it is focused. The caller of //## SetFocused is responsible for focus management, not the renderer itself. //## is doubled because of mitk::FocusManager in GlobalInteraction!!! (ingmar) bool m_Focused; //##Documentation //## @brief Sets m_CurrentWorldGeometry2D virtual void SetCurrentWorldGeometry2D(Geometry2D* geometry2d); //##Documentation //## @brief Sets m_CurrentWorldGeometry virtual void SetCurrentWorldGeometry(Geometry3D* geometry); private: //##Documentation //## Pointer to the worldgeometry, describing the maximal area to be rendered //## (3D as well as 2D). //## It is const, since we are not allowed to change it (it may be taken //## directly from the geometry of an image-slice and thus it would be //## very strange when suddenly the image-slice changes its geometry). //## \sa SetWorldGeometry Geometry3D::Pointer m_WorldGeometry; //##Documentation - //## m_TimeSlicedWorldGeometry is set by SetWorldGeometry if the passed Geometry3D is a - //## TimeSlicedGeometry (or a sub-class of it). If it contains instances of SlicedGeometry3D, + //## m_TimeWorldGeometry is set by SetWorldGeometry if the passed Geometry3D is a + //## TimeGeometry (or a sub-class of it). If it contains instances of SlicedGeometry3D, //## m_Slice and m_TimeStep (set via SetSlice and SetTimeStep, respectively) define - //## which 2D geometry stored in m_TimeSlicedWorldGeometry (if available) + //## which 2D geometry stored in m_TimeWorldGeometry (if available) //## is used as m_CurrentWorldGeometry2D. //## \sa m_CurrentWorldGeometry2D - TimeSlicedGeometry::Pointer m_TimeSlicedWorldGeometry; + TimeGeometry::Pointer m_TimeWorldGeometry; //##Documentation //## Pointer to the current 3D-worldgeometry. Geometry3D::Pointer m_CurrentWorldGeometry; //##Documentation //## Pointer to the current 2D-worldgeometry. The 2D-worldgeometry //## describes the maximal area (2D manifold) to be rendered in case we //## are doing 2D-rendering. More precisely, a subpart of this according //## to m_DisplayGeometry is displayed. //## It is const, since we are not allowed to change it (it may be taken //## directly from the geometry of an image-slice and thus it would be //## very strange when suddenly the image-slice changes its geometry). Geometry2D::Pointer m_CurrentWorldGeometry2D; //##Documentation //## Pointer to the displaygeometry. The displaygeometry describes the //## geometry of the \em visible area in the window controlled by the renderer //## in case we are doing 2D-rendering. //## It is const, since we are not allowed to change it. DisplayGeometry::Pointer m_DisplayGeometry; //##Documentation - //## Defines together with m_Slice which 2D geometry stored in m_TimeSlicedWorldGeometry - //## is used as m_CurrentWorldGeometry2D: m_TimeSlicedWorldGeometry->GetGeometry2D(m_Slice, m_TimeStep). - //## \sa m_TimeSlicedWorldGeometry + //## Defines together with m_Slice which 2D geometry stored in m_TimeWorldGeometry + //## is used as m_CurrentWorldGeometry2D: m_TimeWorldGeometry->GetGeometry2D(m_Slice, m_TimeStep). + //## \sa m_TimeWorldGeometry unsigned int m_Slice; //##Documentation - //## Defines together with m_TimeStep which 2D geometry stored in m_TimeSlicedWorldGeometry - //## is used as m_CurrentWorldGeometry2D: m_TimeSlicedWorldGeometry->GetGeometry2D(m_Slice, m_TimeStep). - //## \sa m_TimeSlicedWorldGeometry + //## Defines together with m_TimeStep which 2D geometry stored in m_TimeWorldGeometry + //## is used as m_CurrentWorldGeometry2D: m_TimeWorldGeometry->GetGeometry2D(m_Slice, m_TimeStep). + //## \sa m_TimeWorldGeometry unsigned int m_TimeStep; //##Documentation //## @brief timestamp of last call of SetWorldGeometry itk::TimeStamp m_CurrentWorldGeometry2DUpdateTime; //##Documentation //## @brief timestamp of last call of SetDisplayGeometry itk::TimeStamp m_DisplayGeometryUpdateTime; //##Documentation //## @brief timestamp of last change of the current time step itk::TimeStamp m_TimeStepUpdateTime; //##Documentation //## @brief Helper class which establishes connection between Interactors and Dispatcher via a common DataStorage. BindDispatcherInteractor* m_BindDispatcherInteractor; protected: virtual void PrintSelf(std::ostream& os, itk::Indent indent) const; //##Documentation //## Data object containing the m_WorldGeometry defined above. Geometry2DData::Pointer m_WorldGeometryData; //##Documentation //## Data object containing the m_DisplayGeometry defined above. Geometry2DData::Pointer m_DisplayGeometryData; //##Documentation //## Data object containing the m_CurrentWorldGeometry2D defined above. Geometry2DData::Pointer m_CurrentWorldGeometry2DData; //##Documentation //## DataNode objects containing the m_WorldGeometryData defined above. DataNode::Pointer m_WorldGeometryNode; //##Documentation //## DataNode objects containing the m_DisplayGeometryData defined above. DataNode::Pointer m_DisplayGeometryNode; //##Documentation //## DataNode objects containing the m_CurrentWorldGeometry2DData defined above. DataNode::Pointer m_CurrentWorldGeometry2DNode; //##Documentation //## @brief test only unsigned long m_DisplayGeometryTransformTime; //##Documentation //## @brief test only unsigned long m_CurrentWorldGeometry2DTransformTime; std::string m_Name; double m_Bounds[6]; bool m_EmptyWorldGeometry; bool m_DepthPeelingEnabled; int m_MaxNumberOfPeels; typedef std::set LODEnabledMappersType; /** Number of mappers which are visible and have level-of-detail * rendering enabled */ unsigned int m_NumberOfVisibleLODEnabledMappers; // Local Storage Handling for mappers protected: std::list m_RegisteredLocalStorageHandlers; public: void RemoveAllLocalStorages(); void RegisterLocalStorageHandler(mitk::BaseLocalStorageHandler *lsh); void UnregisterLocalStorageHandler(mitk::BaseLocalStorageHandler *lsh); }; } // namespace mitk #endif /* BASERENDERER_H_HEADER_INCLUDED_C1CCA0F4 */ diff --git a/Core/Code/Rendering/mitkImageVtkMapper2D.cpp b/Core/Code/Rendering/mitkImageVtkMapper2D.cpp index d8d44c3405..2d63640157 100644 --- a/Core/Code/Rendering/mitkImageVtkMapper2D.cpp +++ b/Core/Code/Rendering/mitkImageVtkMapper2D.cpp @@ -1,1077 +1,1076 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ //MITK #include #include #include #include #include #include #include #include #include -#include #include #include //#include #include #include "mitkImageStatisticsHolder.h" #include "mitkPlaneClipping.h" //MITK Rendering #include "mitkImageVtkMapper2D.h" #include "vtkMitkThickSlicesFilter.h" #include "vtkMitkLevelWindowFilter.h" #include "vtkNeverTranslucentTexture.h" //VTK #include #include #include #include #include #include #include #include #include #include #include #include #include #include //ITK #include #include mitk::ImageVtkMapper2D::ImageVtkMapper2D() { } mitk::ImageVtkMapper2D::~ImageVtkMapper2D() { //The 3D RW Mapper (Geometry2DDataVtkMapper3D) is listening to this event, //in order to delete the images from the 3D RW. this->InvokeEvent( itk::DeleteEvent() ); } //set the two points defining the textured plane according to the dimension and spacing void mitk::ImageVtkMapper2D::GeneratePlane(mitk::BaseRenderer* renderer, vtkFloatingPointType planeBounds[6]) { LocalStorage *localStorage = m_LSH.GetLocalStorage(renderer); float depth = this->CalculateLayerDepth(renderer); //Set the origin to (xMin; yMin; depth) of the plane. This is necessary for obtaining the correct //plane size in crosshair rotation and swivel mode. localStorage->m_Plane->SetOrigin(planeBounds[0], planeBounds[2], depth); //These two points define the axes of the plane in combination with the origin. //Point 1 is the x-axis and point 2 the y-axis. //Each plane is transformed according to the view (axial, coronal and saggital) afterwards. localStorage->m_Plane->SetPoint1(planeBounds[1] , planeBounds[2], depth); //P1: (xMax, yMin, depth) localStorage->m_Plane->SetPoint2(planeBounds[0], planeBounds[3], depth); //P2: (xMin, yMax, depth) } float mitk::ImageVtkMapper2D::CalculateLayerDepth(mitk::BaseRenderer* renderer) { //get the clipping range to check how deep into z direction we can render images double maxRange = renderer->GetVtkRenderer()->GetActiveCamera()->GetClippingRange()[1]; //Due to a VTK bug, we cannot use the whole clipping range. /100 is empirically determined float depth = -maxRange*0.01; // divide by 100 int layer = 0; GetDataNode()->GetIntProperty( "layer", layer, renderer); //add the layer property for each image to render images with a higher layer on top of the others depth += layer*10; //*10: keep some room for each image (e.g. for QBalls in between) if(depth > 0.0f) { depth = 0.0f; MITK_WARN << "Layer value exceeds clipping range. Set to minimum instead."; } return depth; } const mitk::Image* mitk::ImageVtkMapper2D::GetInput( void ) { return static_cast< const mitk::Image * >( GetDataNode()->GetData() ); } vtkProp* mitk::ImageVtkMapper2D::GetVtkProp(mitk::BaseRenderer* renderer) { //return the actor corresponding to the renderer return m_LSH.GetLocalStorage(renderer)->m_Actors; } void mitk::ImageVtkMapper2D::GenerateDataForRenderer( mitk::BaseRenderer *renderer ) { LocalStorage *localStorage = m_LSH.GetLocalStorage(renderer); mitk::Image *input = const_cast< mitk::Image * >( this->GetInput() ); mitk::DataNode* datanode = this->GetDataNode(); if ( input == NULL || input->IsInitialized() == false ) { return; } //check if there is a valid worldGeometry const Geometry2D *worldGeometry = renderer->GetCurrentWorldGeometry2D(); if( ( worldGeometry == NULL ) || ( !worldGeometry->IsValid() ) || ( !worldGeometry->HasReferenceGeometry() )) { return; } input->Update(); // early out if there is no intersection of the current rendering geometry // and the geometry of the image that is to be rendered. if ( !RenderingGeometryIntersectsImage( worldGeometry, input->GetSlicedGeometry() ) ) { // set image to NULL, to clear the texture in 3D, because // the latest image is used there if the plane is out of the geometry // see bug-13275 localStorage->m_ReslicedImage = NULL; localStorage->m_Mapper->SetInput( localStorage->m_EmptyPolyData ); return; } //set main input for ExtractSliceFilter localStorage->m_Reslicer->SetInput(input); localStorage->m_Reslicer->SetWorldGeometry(worldGeometry); localStorage->m_Reslicer->SetTimeStep( this->GetTimestep() ); //set the transformation of the image to adapt reslice axis localStorage->m_Reslicer->SetResliceTransformByGeometry( input->GetTimeGeometry()->GetGeometryForTimeStep( this->GetTimestep() ) ); //is the geometry of the slice based on the input image or the worldgeometry? bool inPlaneResampleExtentByGeometry = false; datanode->GetBoolProperty("in plane resample extent by geometry", inPlaneResampleExtentByGeometry, renderer); localStorage->m_Reslicer->SetInPlaneResampleExtentByGeometry(inPlaneResampleExtentByGeometry); // Initialize the interpolation mode for resampling; switch to nearest // neighbor if the input image is too small. if ( (input->GetDimension() >= 3) && (input->GetDimension(2) > 1) ) { VtkResliceInterpolationProperty *resliceInterpolationProperty; datanode->GetProperty( resliceInterpolationProperty, "reslice interpolation" ); int interpolationMode = VTK_RESLICE_NEAREST; if ( resliceInterpolationProperty != NULL ) { interpolationMode = resliceInterpolationProperty->GetInterpolation(); } switch ( interpolationMode ) { case VTK_RESLICE_NEAREST: localStorage->m_Reslicer->SetInterpolationMode(ExtractSliceFilter::RESLICE_NEAREST); break; case VTK_RESLICE_LINEAR: localStorage->m_Reslicer->SetInterpolationMode(ExtractSliceFilter::RESLICE_LINEAR); break; case VTK_RESLICE_CUBIC: localStorage->m_Reslicer->SetInterpolationMode(ExtractSliceFilter::RESLICE_CUBIC); break; } } else { localStorage->m_Reslicer->SetInterpolationMode(ExtractSliceFilter::RESLICE_NEAREST); } //set the vtk output property to true, makes sure that no unneeded mitk image convertion //is done. localStorage->m_Reslicer->SetVtkOutputRequest(true); //Thickslicing int thickSlicesMode = 0; int thickSlicesNum = 1; // Thick slices parameters if( input->GetPixelType().GetNumberOfComponents() == 1 ) // for now only single component are allowed { DataNode *dn=renderer->GetCurrentWorldGeometry2DNode(); if(dn) { ResliceMethodProperty *resliceMethodEnumProperty=0; if( dn->GetProperty( resliceMethodEnumProperty, "reslice.thickslices" ) && resliceMethodEnumProperty ) thickSlicesMode = resliceMethodEnumProperty->GetValueAsId(); IntProperty *intProperty=0; if( dn->GetProperty( intProperty, "reslice.thickslices.num" ) && intProperty ) { thickSlicesNum = intProperty->GetValue(); if(thickSlicesNum < 1) thickSlicesNum=1; if(thickSlicesNum > 10) thickSlicesNum=10; } } else { MITK_WARN << "no associated widget plane data tree node found"; } } const PlaneGeometry *planeGeometry = dynamic_cast< const PlaneGeometry * >( worldGeometry ); if(thickSlicesMode > 0) { double dataZSpacing = 1.0; Vector3D normInIndex, normal; if ( planeGeometry != NULL ){ normal = planeGeometry->GetNormal(); }else{ const mitk::AbstractTransformGeometry* abstractGeometry = dynamic_cast< const AbstractTransformGeometry * >(worldGeometry); if(abstractGeometry != NULL) normal = abstractGeometry->GetPlane()->GetNormal(); else return; //no fitting geometry set } normal.Normalize(); input->GetTimeGeometry()->GetGeometryForTimeStep( this->GetTimestep() )->WorldToIndex( normal, normInIndex ); dataZSpacing = 1.0 / normInIndex.GetNorm(); localStorage->m_Reslicer->SetOutputDimensionality( 3 ); localStorage->m_Reslicer->SetOutputSpacingZDirection(dataZSpacing); localStorage->m_Reslicer->SetOutputExtentZDirection( -thickSlicesNum, 0+thickSlicesNum ); // Do the reslicing. Modified() is called to make sure that the reslicer is // executed even though the input geometry information did not change; this // is necessary when the input /em data, but not the /em geometry changes. localStorage->m_TSFilter->SetThickSliceMode( thickSlicesMode-1 ); localStorage->m_TSFilter->SetInput( localStorage->m_Reslicer->GetVtkOutput() ); //vtkFilter=>mitkFilter=>vtkFilter update mechanism will fail without calling manually localStorage->m_Reslicer->Modified(); localStorage->m_Reslicer->Update(); localStorage->m_TSFilter->Modified(); localStorage->m_TSFilter->Update(); localStorage->m_ReslicedImage = localStorage->m_TSFilter->GetOutput(); } else { //this is needed when thick mode was enable bevore. These variable have to be reset to default values localStorage->m_Reslicer->SetOutputDimensionality( 2 ); localStorage->m_Reslicer->SetOutputSpacingZDirection(1.0); localStorage->m_Reslicer->SetOutputExtentZDirection( 0, 0 ); localStorage->m_Reslicer->Modified(); //start the pipeline with updating the largest possible, needed if the geometry of the input has changed localStorage->m_Reslicer->UpdateLargestPossibleRegion(); localStorage->m_ReslicedImage = localStorage->m_Reslicer->GetVtkOutput(); } // Bounds information for reslicing (only reuqired if reference geometry // is present) //this used for generating a vtkPLaneSource with the right size vtkFloatingPointType sliceBounds[6]; for ( int i = 0; i < 6; ++i ) { sliceBounds[i] = 0.0; } localStorage->m_Reslicer->GetClippedPlaneBounds(sliceBounds); //get the spacing of the slice localStorage->m_mmPerPixel = localStorage->m_Reslicer->GetOutputSpacing(); // calculate minimum bounding rect of IMAGE in texture { vtkFloatingPointType textureClippingBounds[6]; for ( int i = 0; i < 6; ++i ) { textureClippingBounds[i] = 0.0; } // Calculate the actual bounds of the transformed plane clipped by the // dataset bounding box; this is required for drawing the texture at the // correct position during 3D mapping. mitk::PlaneClipping::CalculateClippedPlaneBounds( input->GetGeometry(), planeGeometry, textureClippingBounds ); textureClippingBounds[0] = static_cast< int >( textureClippingBounds[0] / localStorage->m_mmPerPixel[0] + 0.5 ); textureClippingBounds[1] = static_cast< int >( textureClippingBounds[1] / localStorage->m_mmPerPixel[0] + 0.5 ); textureClippingBounds[2] = static_cast< int >( textureClippingBounds[2] / localStorage->m_mmPerPixel[1] + 0.5 ); textureClippingBounds[3] = static_cast< int >( textureClippingBounds[3] / localStorage->m_mmPerPixel[1] + 0.5 ); //clipping bounds for cutting the image localStorage->m_LevelWindowFilter->SetClippingBounds(textureClippingBounds); } //get the number of scalar components to distinguish between different image types int numberOfComponents = localStorage->m_ReslicedImage->GetNumberOfScalarComponents(); //get the binary property bool binary = false; bool binaryOutline = false; datanode->GetBoolProperty( "binary", binary, renderer ); if(binary) //binary image { datanode->GetBoolProperty( "outline binary", binaryOutline, renderer ); if(binaryOutline) //contour rendering { if ( input->GetPixelType().GetBpe() <= 8 ) { //generate contours/outlines localStorage->m_OutlinePolyData = CreateOutlinePolyData(renderer); float binaryOutlineWidth(1.0); if ( datanode->GetFloatProperty( "outline width", binaryOutlineWidth, renderer ) ) { if ( localStorage->m_Actors->GetNumberOfPaths() > 1 ) { float binaryOutlineShadowWidth(1.5); datanode->GetFloatProperty( "outline shadow width", binaryOutlineShadowWidth, renderer ); dynamic_cast(localStorage->m_Actors->GetParts()->GetItemAsObject(0)) ->GetProperty()->SetLineWidth( binaryOutlineWidth * binaryOutlineShadowWidth ); } localStorage->m_Actor->GetProperty()->SetLineWidth( binaryOutlineWidth ); } } else { binaryOutline = false; this->ApplyLookuptable(renderer); MITK_WARN << "Type of all binary images should be (un)signed char. Outline does not work on other pixel types!"; } } else //standard binary image { if(numberOfComponents != 1) { MITK_ERROR << "Rendering Error: Binary Images with more then 1 component are not supported!"; } } } if (!(numberOfComponents == 1 || numberOfComponents == 3 || numberOfComponents == 4)) { MITK_WARN << "Unknown number of components!"; } this->ApplyOpacity( renderer ); this->ApplyRenderingMode(renderer); // do not use a VTK lookup table (we do that ourselves in m_LevelWindowFilter) localStorage->m_Texture->MapColorScalarsThroughLookupTableOff(); //connect the input with the levelwindow filter localStorage->m_LevelWindowFilter->SetInput(localStorage->m_ReslicedImage); //connect the texture with the output of the levelwindow filter // check for texture interpolation property bool textureInterpolation = false; GetDataNode()->GetBoolProperty( "texture interpolation", textureInterpolation, renderer ); //set the interpolation modus according to the property localStorage->m_Texture->SetInterpolate(textureInterpolation); localStorage->m_Texture->SetInputConnection(localStorage->m_LevelWindowFilter->GetOutputPort()); this->TransformActor( renderer ); vtkActor* contourShadowActor = dynamic_cast (localStorage->m_Actors->GetParts()->GetItemAsObject(0)); if(binary && binaryOutline) //connect the mapper with the polyData which contains the lines { //We need the contour for the binary outline property as actor localStorage->m_Mapper->SetInput(localStorage->m_OutlinePolyData); localStorage->m_Actor->SetTexture(NULL); //no texture for contours bool binaryOutlineShadow( false ); datanode->GetBoolProperty( "outline binary shadow", binaryOutlineShadow, renderer ); if ( binaryOutlineShadow ) contourShadowActor->SetVisibility( true ); else contourShadowActor->SetVisibility( false ); } else { //Connect the mapper with the input texture. This is the standard case. //setup the textured plane this->GeneratePlane( renderer, sliceBounds ); //set the plane as input for the mapper localStorage->m_Mapper->SetInputConnection(localStorage->m_Plane->GetOutputPort()); //set the texture for the actor localStorage->m_Actor->SetTexture(localStorage->m_Texture); contourShadowActor->SetVisibility( false ); } // We have been modified => save this for next Update() localStorage->m_LastUpdateTime.Modified(); } void mitk::ImageVtkMapper2D::ApplyLevelWindow(mitk::BaseRenderer *renderer) { LocalStorage *localStorage = this->GetLocalStorage( renderer ); LevelWindow levelWindow; this->GetDataNode()->GetLevelWindow( levelWindow, renderer, "levelwindow" ); localStorage->m_LevelWindowFilter->GetLookupTable()->SetRange( levelWindow.GetLowerWindowBound(), levelWindow.GetUpperWindowBound() ); mitk::LevelWindow opacLevelWindow; if( this->GetDataNode()->GetLevelWindow( opacLevelWindow, renderer, "opaclevelwindow" ) ) { //pass the opaque level window to the filter localStorage->m_LevelWindowFilter->SetMinOpacity(opacLevelWindow.GetLowerWindowBound()); localStorage->m_LevelWindowFilter->SetMaxOpacity(opacLevelWindow.GetUpperWindowBound()); } else { //no opaque level window localStorage->m_LevelWindowFilter->SetMinOpacity(0.0); localStorage->m_LevelWindowFilter->SetMaxOpacity(255.0); } } void mitk::ImageVtkMapper2D::ApplyColor( mitk::BaseRenderer* renderer ) { LocalStorage *localStorage = this->GetLocalStorage( renderer ); float rgb[3]= { 1.0f, 1.0f, 1.0f }; // check for color prop and use it for rendering if it exists // binary image hovering & binary image selection bool hover = false; bool selected = false; GetDataNode()->GetBoolProperty("binaryimage.ishovering", hover, renderer); GetDataNode()->GetBoolProperty("selected", selected, renderer); if(hover && !selected) { mitk::ColorProperty::Pointer colorprop = dynamic_cast(GetDataNode()->GetProperty ("binaryimage.hoveringcolor", renderer)); if(colorprop.IsNotNull()) { memcpy(rgb, colorprop->GetColor().GetDataPointer(), 3*sizeof(float)); } else { GetDataNode()->GetColor( rgb, renderer, "color" ); } } if(selected) { mitk::ColorProperty::Pointer colorprop = dynamic_cast(GetDataNode()->GetProperty ("binaryimage.selectedcolor", renderer)); if(colorprop.IsNotNull()) { memcpy(rgb, colorprop->GetColor().GetDataPointer(), 3*sizeof(float)); } else { GetDataNode()->GetColor(rgb, renderer, "color"); } } if(!hover && !selected) { GetDataNode()->GetColor( rgb, renderer, "color" ); } double rgbConv[3] = {(double)rgb[0], (double)rgb[1], (double)rgb[2]}; //conversion to double for VTK dynamic_cast (localStorage->m_Actors->GetParts()->GetItemAsObject(0))->GetProperty()->SetColor(rgbConv); localStorage->m_Actor->GetProperty()->SetColor(rgbConv); if ( localStorage->m_Actors->GetParts()->GetNumberOfItems() > 1 ) { float rgb[3]= { 1.0f, 1.0f, 1.0f }; mitk::ColorProperty::Pointer colorprop = dynamic_cast(GetDataNode()->GetProperty ("outline binary shadow color", renderer)); if(colorprop.IsNotNull()) { memcpy(rgb, colorprop->GetColor().GetDataPointer(), 3*sizeof(float)); } double rgbConv[3] = {(double)rgb[0], (double)rgb[1], (double)rgb[2]}; //conversion to double for VTK dynamic_cast( localStorage->m_Actors->GetParts()->GetItemAsObject(0) )->GetProperty()->SetColor(rgbConv); } } void mitk::ImageVtkMapper2D::ApplyOpacity( mitk::BaseRenderer* renderer ) { LocalStorage* localStorage = this->GetLocalStorage( renderer ); float opacity = 1.0f; // check for opacity prop and use it for rendering if it exists GetDataNode()->GetOpacity( opacity, renderer, "opacity" ); //set the opacity according to the properties localStorage->m_Actor->GetProperty()->SetOpacity(opacity); if ( localStorage->m_Actors->GetParts()->GetNumberOfItems() > 1 ) { dynamic_cast( localStorage->m_Actors->GetParts()->GetItemAsObject(0) )->GetProperty()->SetOpacity(opacity); } } void mitk::ImageVtkMapper2D::ApplyRenderingMode( mitk::BaseRenderer* renderer ) { LocalStorage* localStorage = m_LSH.GetLocalStorage(renderer); bool binary = false; this->GetDataNode()->GetBoolProperty( "binary", binary, renderer ); if(binary) // is it a binary image? { //for binary images, we always use our default LuT and map every value to (0,1) //the opacity of 0 will always be 0.0. We never a apply a LuT/TfF nor a level window. localStorage->m_LevelWindowFilter->SetLookupTable(localStorage->m_BinaryLookupTable); } else { //all other image types can make use of the rendering mode int renderingMode = mitk::RenderingModeProperty::LEVELWINDOW_COLOR; mitk::RenderingModeProperty::Pointer mode = dynamic_cast(this->GetDataNode()->GetProperty( "Image Rendering.Mode", renderer )); if(mode.IsNotNull()) { renderingMode = mode->GetRenderingMode(); } switch(renderingMode) { case mitk::RenderingModeProperty::LEVELWINDOW_COLOR: MITK_DEBUG << "'Image Rendering.Mode' = LevelWindow_Color"; localStorage->m_LevelWindowFilter->SetLookupTable( localStorage->m_DefaultLookupTable ); this->ApplyLevelWindow( renderer ); break; case mitk::RenderingModeProperty::LOOKUPTABLE_LEVELWINDOW_COLOR: MITK_DEBUG << "'Image Rendering.Mode' = LevelWindow_LookupTable_Color"; this->ApplyLookuptable( renderer ); this->ApplyLevelWindow( renderer ); break; case mitk::RenderingModeProperty::COLORTRANSFERFUNCTION_LEVELWINDOW_COLOR: MITK_DEBUG << "'Image Rendering.Mode' = LevelWindow_ColorTransferFunction_Color"; this->ApplyColorTransferFunction( renderer ); this->ApplyLevelWindow( renderer ); break; case mitk::RenderingModeProperty::LOOKUPTABLE_COLOR: MITK_DEBUG << "'Image Rendering.Mode' = LookupTable_Color"; this->ApplyLookuptable( renderer ); break; case mitk::RenderingModeProperty::COLORTRANSFERFUNCTION_COLOR: MITK_DEBUG << "'Image Rendering.Mode' = ColorTransferFunction_Color"; this->ApplyColorTransferFunction( renderer ); break; default: MITK_ERROR << "No valid 'Image Rendering.Mode' set"; break; } } //we apply color for all images (including binaries). this->ApplyColor( renderer ); } void mitk::ImageVtkMapper2D::ApplyLookuptable( mitk::BaseRenderer* renderer ) { LocalStorage* localStorage = m_LSH.GetLocalStorage(renderer); vtkLookupTable* usedLookupTable = localStorage->m_ColorLookupTable; // If lookup table or transferfunction use is requested... mitk::LookupTableProperty::Pointer lookupTableProp = dynamic_cast(this->GetDataNode()->GetProperty("LookupTable")); if( lookupTableProp.IsNotNull() ) // is a lookuptable set? { usedLookupTable = lookupTableProp->GetLookupTable()->GetVtkLookupTable(); } else { MITK_WARN << "Image Rendering.Mode was set to use a lookup table but there is no property 'LookupTable'. A default (rainbow) lookup table will be used."; } localStorage->m_LevelWindowFilter->SetLookupTable(usedLookupTable); } void mitk::ImageVtkMapper2D::ApplyColorTransferFunction(mitk::BaseRenderer *renderer) { mitk::TransferFunctionProperty::Pointer transferFunctionProp = dynamic_cast(this->GetDataNode()->GetProperty("Image Rendering.Transfer Function",renderer )); if( transferFunctionProp.IsNull() ) { MITK_ERROR << "'Image Rendering.Mode'' was set to use a color transfer function but there is no property 'Image Rendering.Transfer Function'. Nothing will be done."; return; } LocalStorage* localStorage = m_LSH.GetLocalStorage(renderer); //pass the transfer function to our level window filter localStorage->m_LevelWindowFilter->SetLookupTable(transferFunctionProp->GetValue()->GetColorTransferFunction()); } void mitk::ImageVtkMapper2D::Update(mitk::BaseRenderer* renderer) { bool visible = true; GetDataNode()->GetVisibility(visible, renderer, "visible"); if ( !visible ) { return; } mitk::Image* data = const_cast( this->GetInput() ); if ( data == NULL ) { return; } // Calculate time step of the input data for the specified renderer (integer value) this->CalculateTimeStep( renderer ); // Check if time step is valid const TimeGeometry *dataTimeGeometry = data->GetTimeGeometry(); if ( ( dataTimeGeometry == NULL ) || ( dataTimeGeometry->GetNumberOfTimeSteps() == 0 ) || ( !dataTimeGeometry->IsValidTimeStep( this->GetTimestep() ) ) ) { return; } const DataNode *node = this->GetDataNode(); data->UpdateOutputInformation(); LocalStorage *localStorage = m_LSH.GetLocalStorage(renderer); //check if something important has changed and we need to rerender if ( (localStorage->m_LastUpdateTime < node->GetMTime()) //was the node modified? || (localStorage->m_LastUpdateTime < data->GetPipelineMTime()) //Was the data modified? || (localStorage->m_LastUpdateTime < renderer->GetCurrentWorldGeometry2DUpdateTime()) //was the geometry modified? || (localStorage->m_LastUpdateTime < renderer->GetCurrentWorldGeometry2D()->GetMTime()) || (localStorage->m_LastUpdateTime < node->GetPropertyList()->GetMTime()) //was a property modified? || (localStorage->m_LastUpdateTime < node->GetPropertyList(renderer)->GetMTime()) ) { this->GenerateDataForRenderer( renderer ); } // since we have checked that nothing important has changed, we can set // m_LastUpdateTime to the current time localStorage->m_LastUpdateTime.Modified(); } void mitk::ImageVtkMapper2D::SetDefaultProperties(mitk::DataNode* node, mitk::BaseRenderer* renderer, bool overwrite) { mitk::Image::Pointer image = dynamic_cast(node->GetData()); // Properties common for both images and segmentations node->AddProperty( "depthOffset", mitk::FloatProperty::New( 0.0 ), renderer, overwrite ); node->AddProperty( "outline binary", mitk::BoolProperty::New( false ), renderer, overwrite ); node->AddProperty( "outline width", mitk::FloatProperty::New( 1.0 ), renderer, overwrite ); node->AddProperty( "outline binary shadow", mitk::BoolProperty::New( false ), renderer, overwrite ); node->AddProperty( "outline binary shadow color", ColorProperty::New(0.0,0.0,0.0), renderer, overwrite ); node->AddProperty( "outline shadow width", mitk::FloatProperty::New( 1.5 ), renderer, overwrite ); if(image->IsRotated()) node->AddProperty( "reslice interpolation", mitk::VtkResliceInterpolationProperty::New(VTK_RESLICE_CUBIC) ); else node->AddProperty( "reslice interpolation", mitk::VtkResliceInterpolationProperty::New() ); node->AddProperty( "texture interpolation", mitk::BoolProperty::New( mitk::DataNodeFactory::m_TextureInterpolationActive ) ); // set to user configurable default value (see global options) node->AddProperty( "in plane resample extent by geometry", mitk::BoolProperty::New( false ) ); node->AddProperty( "bounding box", mitk::BoolProperty::New( false ) ); mitk::RenderingModeProperty::Pointer renderingModeProperty = mitk::RenderingModeProperty::New(); node->AddProperty( "Image Rendering.Mode", renderingModeProperty); std::string photometricInterpretation; // DICOM tag telling us how pixel values should be displayed if ( node->GetStringProperty( "dicom.pixel.PhotometricInterpretation", photometricInterpretation ) ) { // modality provided by DICOM or other reader if ( photometricInterpretation.find("MONOCHROME1") != std::string::npos ) // meaning: display MINIMUM pixels as WHITE { // generate LUT (white to black) mitk::LookupTable::Pointer mitkLut = mitk::LookupTable::New(); vtkLookupTable* bwLut = mitkLut->GetVtkLookupTable(); bwLut->SetTableRange (0, 1); bwLut->SetSaturationRange (0, 0); bwLut->SetHueRange (0, 0); bwLut->SetValueRange (1, 0); bwLut->SetAlphaRange (1, 1); bwLut->SetRampToLinear(); bwLut->Build(); mitk::LookupTableProperty::Pointer mitkLutProp = mitk::LookupTableProperty::New(); mitkLutProp->SetLookupTable(mitkLut); node->SetProperty( "LookupTable", mitkLutProp ); } else if ( photometricInterpretation.find("MONOCHROME2") != std::string::npos ) // meaning: display MINIMUM pixels as BLACK { // apply default LUT (black to white) node->SetProperty( "color", mitk::ColorProperty::New( 1,1,1 ), renderer ); } // PALETTE interpretation should be handled ok by RGB loading } bool isBinaryImage(false); if ( ! node->GetBoolProperty("binary", isBinaryImage) ) { // ok, property is not set, use heuristic to determine if this // is a binary image mitk::Image::Pointer centralSliceImage; ScalarType minValue = 0.0; ScalarType maxValue = 0.0; ScalarType min2ndValue = 0.0; ScalarType max2ndValue = 0.0; mitk::ImageSliceSelector::Pointer sliceSelector = mitk::ImageSliceSelector::New(); sliceSelector->SetInput(image); sliceSelector->SetSliceNr(image->GetDimension(2)/2); sliceSelector->SetTimeNr(image->GetDimension(3)/2); sliceSelector->SetChannelNr(image->GetDimension(4)/2); sliceSelector->Update(); centralSliceImage = sliceSelector->GetOutput(); if ( centralSliceImage.IsNotNull() && centralSliceImage->IsInitialized() ) { minValue = centralSliceImage->GetStatistics()->GetScalarValueMin(); maxValue = centralSliceImage->GetStatistics()->GetScalarValueMax(); min2ndValue = centralSliceImage->GetStatistics()->GetScalarValue2ndMin(); max2ndValue = centralSliceImage->GetStatistics()->GetScalarValue2ndMax(); } if ((maxValue == min2ndValue && minValue == max2ndValue) || minValue == maxValue) { // centralSlice is strange, lets look at all data minValue = image->GetStatistics()->GetScalarValueMin(); maxValue = image->GetStatistics()->GetScalarValueMaxNoRecompute(); min2ndValue = image->GetStatistics()->GetScalarValue2ndMinNoRecompute(); max2ndValue = image->GetStatistics()->GetScalarValue2ndMaxNoRecompute(); } isBinaryImage = ( maxValue == min2ndValue && minValue == max2ndValue ); } // some more properties specific for a binary... if (isBinaryImage) { node->AddProperty( "opacity", mitk::FloatProperty::New(0.3f), renderer, overwrite ); node->AddProperty( "color", ColorProperty::New(1.0,0.0,0.0), renderer, overwrite ); node->AddProperty( "binaryimage.selectedcolor", ColorProperty::New(1.0,0.0,0.0), renderer, overwrite ); node->AddProperty( "binaryimage.selectedannotationcolor", ColorProperty::New(1.0,0.0,0.0), renderer, overwrite ); node->AddProperty( "binaryimage.hoveringcolor", ColorProperty::New(1.0,0.0,0.0), renderer, overwrite ); node->AddProperty( "binaryimage.hoveringannotationcolor", ColorProperty::New(1.0,0.0,0.0), renderer, overwrite ); node->AddProperty( "binary", mitk::BoolProperty::New( true ), renderer, overwrite ); node->AddProperty("layer", mitk::IntProperty::New(10), renderer, overwrite); } else //...or image type object { node->AddProperty( "opacity", mitk::FloatProperty::New(1.0f), renderer, overwrite ); node->AddProperty( "color", ColorProperty::New(1.0,1.0,1.0), renderer, overwrite ); node->AddProperty( "binary", mitk::BoolProperty::New( false ), renderer, overwrite ); node->AddProperty("layer", mitk::IntProperty::New(0), renderer, overwrite); } if(image.IsNotNull() && image->IsInitialized()) { if((overwrite) || (node->GetProperty("levelwindow", renderer)==NULL)) { /* initialize level/window from DICOM tags */ std::string sLevel; std::string sWindow; if ( image->GetPropertyList()->GetStringProperty( "dicom.voilut.WindowCenter", sLevel ) && image->GetPropertyList()->GetStringProperty( "dicom.voilut.WindowWidth", sWindow ) ) { float level = atof( sLevel.c_str() ); float window = atof( sWindow.c_str() ); mitk::LevelWindow contrast; std::string sSmallestPixelValueInSeries; std::string sLargestPixelValueInSeries; if ( image->GetPropertyList()->GetStringProperty( "dicom.series.SmallestPixelValueInSeries", sSmallestPixelValueInSeries ) && image->GetPropertyList()->GetStringProperty( "dicom.series.LargestPixelValueInSeries", sLargestPixelValueInSeries ) ) { float smallestPixelValueInSeries = atof( sSmallestPixelValueInSeries.c_str() ); float largestPixelValueInSeries = atof( sLargestPixelValueInSeries.c_str() ); contrast.SetRangeMinMax( smallestPixelValueInSeries-1, largestPixelValueInSeries+1 ); // why not a little buffer? // might remedy some l/w widget challenges } else { contrast.SetAuto( static_cast(node->GetData()), false, true ); // we need this as a fallback } contrast.SetLevelWindow( level, window, true ); node->SetProperty( "levelwindow", LevelWindowProperty::New( contrast ), renderer ); } } if(((overwrite) || (node->GetProperty("opaclevelwindow", renderer)==NULL)) && (image->GetPixelType().GetPixelTypeId() == itk::ImageIOBase::RGBA) && (image->GetPixelType().GetTypeId() == typeid( unsigned char)) ) { mitk::LevelWindow opaclevwin; opaclevwin.SetRangeMinMax(0,255); opaclevwin.SetWindowBounds(0,255); mitk::LevelWindowProperty::Pointer prop = mitk::LevelWindowProperty::New(opaclevwin); node->SetProperty( "opaclevelwindow", prop, renderer ); } } Superclass::SetDefaultProperties(node, renderer, overwrite); } mitk::ImageVtkMapper2D::LocalStorage* mitk::ImageVtkMapper2D::GetLocalStorage(mitk::BaseRenderer* renderer) { return m_LSH.GetLocalStorage(renderer); } vtkSmartPointer mitk::ImageVtkMapper2D::CreateOutlinePolyData(mitk::BaseRenderer* renderer ){ LocalStorage* localStorage = this->GetLocalStorage(renderer); //get the min and max index values of each direction int* extent = localStorage->m_ReslicedImage->GetExtent(); int xMin = extent[0]; int xMax = extent[1]; int yMin = extent[2]; int yMax = extent[3]; int* dims = localStorage->m_ReslicedImage->GetDimensions(); //dimensions of the image int line = dims[0]; //how many pixels per line? int x = xMin; //pixel index x int y = yMin; //pixel index y char* currentPixel; //get the depth for each contour float depth = CalculateLayerDepth(renderer); vtkSmartPointer points = vtkSmartPointer::New(); //the points to draw vtkSmartPointer lines = vtkSmartPointer::New(); //the lines to connect the points // We take the pointer to the first pixel of the image currentPixel = static_cast(localStorage->m_ReslicedImage->GetScalarPointer() ); while (y <= yMax) { //if the current pixel value is set to something if ((currentPixel) && (*currentPixel != 0)) { //check in which direction a line is necessary //a line is added if the neighbor of the current pixel has the value 0 //and if the pixel is located at the edge of the image //if vvvvv not the first line vvvvv if (y > yMin && *(currentPixel-line) == 0) { //x direction - bottom edge of the pixel //add the 2 points vtkIdType p1 = points->InsertNextPoint(x*localStorage->m_mmPerPixel[0], y*localStorage->m_mmPerPixel[1], depth); vtkIdType p2 = points->InsertNextPoint((x+1)*localStorage->m_mmPerPixel[0], y*localStorage->m_mmPerPixel[1], depth); //add the line between both points lines->InsertNextCell(2); lines->InsertCellPoint(p1); lines->InsertCellPoint(p2); } //if vvvvv not the last line vvvvv if (y < yMax && *(currentPixel+line) == 0) { //x direction - top edge of the pixel vtkIdType p1 = points->InsertNextPoint(x*localStorage->m_mmPerPixel[0], (y+1)*localStorage->m_mmPerPixel[1], depth); vtkIdType p2 = points->InsertNextPoint((x+1)*localStorage->m_mmPerPixel[0], (y+1)*localStorage->m_mmPerPixel[1], depth); lines->InsertNextCell(2); lines->InsertCellPoint(p1); lines->InsertCellPoint(p2); } //if vvvvv not the first pixel vvvvv if ( (x > xMin || y > yMin) && *(currentPixel-1) == 0) { //y direction - left edge of the pixel vtkIdType p1 = points->InsertNextPoint(x*localStorage->m_mmPerPixel[0], y*localStorage->m_mmPerPixel[1], depth); vtkIdType p2 = points->InsertNextPoint(x*localStorage->m_mmPerPixel[0], (y+1)*localStorage->m_mmPerPixel[1], depth); lines->InsertNextCell(2); lines->InsertCellPoint(p1); lines->InsertCellPoint(p2); } //if vvvvv not the last pixel vvvvv if ( (y < yMax || (x < xMax) ) && *(currentPixel+1) == 0) { //y direction - right edge of the pixel vtkIdType p1 = points->InsertNextPoint((x+1)*localStorage->m_mmPerPixel[0], y*localStorage->m_mmPerPixel[1], depth); vtkIdType p2 = points->InsertNextPoint((x+1)*localStorage->m_mmPerPixel[0], (y+1)*localStorage->m_mmPerPixel[1], depth); lines->InsertNextCell(2); lines->InsertCellPoint(p1); lines->InsertCellPoint(p2); } /* now consider pixels at the edge of the image */ //if vvvvv left edge of image vvvvv if (x == xMin) { //draw left edge of the pixel vtkIdType p1 = points->InsertNextPoint(x*localStorage->m_mmPerPixel[0], y*localStorage->m_mmPerPixel[1], depth); vtkIdType p2 = points->InsertNextPoint(x*localStorage->m_mmPerPixel[0], (y+1)*localStorage->m_mmPerPixel[1], depth); lines->InsertNextCell(2); lines->InsertCellPoint(p1); lines->InsertCellPoint(p2); } //if vvvvv right edge of image vvvvv if (x == xMax) { //draw right edge of the pixel vtkIdType p1 = points->InsertNextPoint((x+1)*localStorage->m_mmPerPixel[0], y*localStorage->m_mmPerPixel[1], depth); vtkIdType p2 = points->InsertNextPoint((x+1)*localStorage->m_mmPerPixel[0], (y+1)*localStorage->m_mmPerPixel[1], depth); lines->InsertNextCell(2); lines->InsertCellPoint(p1); lines->InsertCellPoint(p2); } //if vvvvv bottom edge of image vvvvv if (y == yMin) { //draw bottom edge of the pixel vtkIdType p1 = points->InsertNextPoint(x*localStorage->m_mmPerPixel[0], y*localStorage->m_mmPerPixel[1], depth); vtkIdType p2 = points->InsertNextPoint((x+1)*localStorage->m_mmPerPixel[0], y*localStorage->m_mmPerPixel[1], depth); lines->InsertNextCell(2); lines->InsertCellPoint(p1); lines->InsertCellPoint(p2); } //if vvvvv top edge of image vvvvv if (y == yMax) { //draw top edge of the pixel vtkIdType p1 = points->InsertNextPoint(x*localStorage->m_mmPerPixel[0], (y+1)*localStorage->m_mmPerPixel[1], depth); vtkIdType p2 = points->InsertNextPoint((x+1)*localStorage->m_mmPerPixel[0], (y+1)*localStorage->m_mmPerPixel[1], depth); lines->InsertNextCell(2); lines->InsertCellPoint(p1); lines->InsertCellPoint(p2); } }//end if currentpixel is set x++; if (x > xMax) { //reached end of line x = xMin; y++; } // Increase the pointer-position to the next pixel. // This is safe, as the while-loop and the x-reset logic above makes // sure we do not exceed the bounds of the image currentPixel++; }//end of while // Create a polydata to store everything in vtkSmartPointer polyData = vtkSmartPointer::New(); // Add the points to the dataset polyData->SetPoints(points); // Add the lines to the dataset polyData->SetLines(lines); return polyData; } void mitk::ImageVtkMapper2D::TransformActor(mitk::BaseRenderer* renderer) { LocalStorage *localStorage = m_LSH.GetLocalStorage(renderer); //get the transformation matrix of the reslicer in order to render the slice as axial, coronal or saggital vtkSmartPointer trans = vtkSmartPointer::New(); vtkSmartPointer matrix = localStorage->m_Reslicer->GetResliceAxes(); trans->SetMatrix(matrix); //transform the plane/contour (the actual actor) to the corresponding view (axial, coronal or saggital) localStorage->m_Actor->SetUserTransform(trans); //transform the origin to center based coordinates, because MITK is center based. localStorage->m_Actor->SetPosition( -0.5*localStorage->m_mmPerPixel[0], -0.5*localStorage->m_mmPerPixel[1], 0.0); if ( localStorage->m_Actors->GetNumberOfPaths() > 1 ) { vtkActor* secondaryActor = dynamic_cast( localStorage->m_Actors->GetParts()->GetItemAsObject(0) ); secondaryActor->SetUserTransform(trans); secondaryActor->SetPosition( -0.5*localStorage->m_mmPerPixel[0], -0.5*localStorage->m_mmPerPixel[1], 0.0); } } bool mitk::ImageVtkMapper2D::RenderingGeometryIntersectsImage( const Geometry2D* renderingGeometry, SlicedGeometry3D* imageGeometry ) { // if either one of the two geometries is NULL we return true // for safety reasons if ( renderingGeometry == NULL || imageGeometry == NULL ) return true; // get the distance for the first cornerpoint ScalarType initialDistance = renderingGeometry->SignedDistance( imageGeometry->GetCornerPoint( 0 ) ); for( int i=1; i<8; i++ ) { mitk::Point3D cornerPoint = imageGeometry->GetCornerPoint( i ); // get the distance to the other cornerpoints ScalarType distance = renderingGeometry->SignedDistance( cornerPoint ); // if it has not the same signing as the distance of the first point if ( initialDistance * distance < 0 ) { // we have an intersection and return true return true; } } // all distances have the same sign, no intersection and we return false return false; } mitk::ImageVtkMapper2D::LocalStorage::~LocalStorage() { } mitk::ImageVtkMapper2D::LocalStorage::LocalStorage() { m_LevelWindowFilter = vtkSmartPointer::New(); //Do as much actions as possible in here to avoid double executions. m_Plane = vtkSmartPointer::New(); m_Texture = vtkSmartPointer::New().GetPointer(); m_DefaultLookupTable = vtkSmartPointer::New(); m_BinaryLookupTable = vtkSmartPointer::New(); m_ColorLookupTable = vtkSmartPointer::New(); m_Mapper = vtkSmartPointer::New(); m_Actor = vtkSmartPointer::New(); m_Actors = vtkSmartPointer::New(); m_Reslicer = mitk::ExtractSliceFilter::New(); m_TSFilter = vtkSmartPointer::New(); m_OutlinePolyData = vtkSmartPointer::New(); m_ReslicedImage = vtkSmartPointer::New(); m_EmptyPolyData = vtkSmartPointer::New(); //the following actions are always the same and thus can be performed //in the constructor for each image (i.e. the image-corresponding local storage) m_TSFilter->ReleaseDataFlagOn(); //built a default lookuptable m_DefaultLookupTable->SetRampToLinear(); m_DefaultLookupTable->SetSaturationRange( 0.0, 0.0 ); m_DefaultLookupTable->SetHueRange( 0.0, 0.0 ); m_DefaultLookupTable->SetValueRange( 0.0, 1.0 ); m_DefaultLookupTable->Build(); m_BinaryLookupTable->SetRampToLinear(); m_BinaryLookupTable->SetSaturationRange( 0.0, 0.0 ); m_BinaryLookupTable->SetHueRange( 0.0, 0.0 ); m_BinaryLookupTable->SetValueRange( 0.0, 1.0 ); m_BinaryLookupTable->SetRange(0.0, 1.0); m_BinaryLookupTable->Build(); // add a default rainbow lookup table for color mapping m_ColorLookupTable->SetRampToLinear(); m_ColorLookupTable->SetHueRange(0.6667, 0.0); m_ColorLookupTable->SetTableRange(0.0, 20.0); m_ColorLookupTable->Build(); // make first value transparent { double rgba[4]; m_BinaryLookupTable->GetTableValue(0, rgba); m_BinaryLookupTable->SetTableValue(0, rgba[0], rgba[1], rgba[2], 0.0); // background to 0 } //do not repeat the texture (the image) m_Texture->RepeatOff(); //set the mapper for the actor m_Actor->SetMapper( m_Mapper ); vtkSmartPointer outlineShadowActor = vtkSmartPointer::New(); outlineShadowActor->SetMapper( m_Mapper ); m_Actors->AddPart( outlineShadowActor ); m_Actors->AddPart( m_Actor ); } diff --git a/Core/Code/Rendering/mitkMapper.cpp b/Core/Code/Rendering/mitkMapper.cpp index 47b640b5d4..14f906fa33 100644 --- a/Core/Code/Rendering/mitkMapper.cpp +++ b/Core/Code/Rendering/mitkMapper.cpp @@ -1,150 +1,150 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkMapper.h" #include "mitkDataNode.h" #include "mitkBaseRenderer.h" #include "mitkProperties.h" mitk::Mapper::Mapper() :m_TimeStep( 0 ) { } mitk::Mapper::~Mapper() { } mitk::BaseData* mitk::Mapper::GetData() const { return m_DataNode->GetData(); } mitk::DataNode* mitk::Mapper::GetDataNode() const { return this->m_DataNode.GetPointer(); } bool mitk::Mapper::GetColor(float rgb[3], mitk::BaseRenderer* renderer, const char* name) const { const mitk::DataNode* node=GetDataNode(); if(node==NULL) return false; return node->GetColor(rgb, renderer, name); } bool mitk::Mapper::GetVisibility(bool &visible, mitk::BaseRenderer* renderer, const char* name) const { const mitk::DataNode* node=GetDataNode(); if(node==NULL) return false; return node->GetVisibility(visible, renderer, name); } bool mitk::Mapper::GetOpacity(float &opacity, mitk::BaseRenderer* renderer, const char* name) const { const mitk::DataNode* node=GetDataNode(); if(node==NULL) return false; return node->GetOpacity(opacity, renderer, name); } bool mitk::Mapper::GetLevelWindow(mitk::LevelWindow& levelWindow, mitk::BaseRenderer* renderer, const char* name) const { const mitk::DataNode* node=GetDataNode(); if(node==NULL) return false; return node->GetLevelWindow(levelWindow, renderer, name); } bool mitk::Mapper::IsVisible(mitk::BaseRenderer* renderer, const char* name) const { bool visible = true; GetDataNode()->GetVisibility(visible, renderer, name); return visible; } void mitk::Mapper::CalculateTimeStep( mitk::BaseRenderer *renderer ) { if ( ( renderer != NULL ) && ( m_DataNode.GetPointer() != NULL ) ) { m_TimeStep = renderer->GetTimeStep(m_DataNode->GetData()); } else { m_TimeStep = 0; } } void mitk::Mapper::Update(mitk::BaseRenderer *renderer) { const DataNode* node = GetDataNode(); assert(node!=NULL); //safety cause there are datatreenodes that have no defined data (video-nodes and root) unsigned int dataMTime = 0; mitk::BaseData::Pointer data = static_cast(node->GetData()); if (data.IsNotNull()) { dataMTime = data->GetMTime(); } // Calculate time step of the input data for the specified renderer (integer value) this->CalculateTimeStep( renderer ); // Check if time step is valid const TimeGeometry *dataTimeGeometry = data->GetTimeGeometry(); if ( ( dataTimeGeometry == NULL ) || ( dataTimeGeometry->GetNumberOfTimeSteps() == 0 ) || ( !dataTimeGeometry->IsValidTimeStep( m_TimeStep ) ) ) { - // TimeSlicedGeometry or time step is not valid for this data: + // TimeGeometry or time step is not valid for this data: // reset mapper so that nothing is displayed this->ResetMapper( renderer ); return; } if( (m_LastUpdateTime < GetMTime()) || (m_LastUpdateTime < node->GetDataReferenceChangedTime()) || (m_LastUpdateTime < dataMTime) || (renderer && (m_LastUpdateTime < renderer->GetTimeStepUpdateTime())) ) { m_LastUpdateTime.Modified(); } this->GenerateDataForRenderer(renderer); } void mitk::Mapper::SetDefaultProperties(mitk::DataNode* node, mitk::BaseRenderer* renderer, bool overwrite) { node->AddProperty( "visible", mitk::BoolProperty::New(true), renderer, overwrite ); node->AddProperty( "layer", mitk::IntProperty::New(0), renderer, overwrite); node->AddProperty( "name", mitk::StringProperty::New("No Name!"), renderer, overwrite ); } diff --git a/Core/Code/Rendering/mitkPointSetGLMapper2D.cpp b/Core/Code/Rendering/mitkPointSetGLMapper2D.cpp index 57f9ed380d..f8cc7aead4 100644 --- a/Core/Code/Rendering/mitkPointSetGLMapper2D.cpp +++ b/Core/Code/Rendering/mitkPointSetGLMapper2D.cpp @@ -1,523 +1,523 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkPointSetGLMapper2D.h" #include "mitkPointSet.h" #include "mitkPlaneGeometry.h" #include "mitkColorProperty.h" #include "mitkProperties.h" #include "vtkLinearTransform.h" #include "mitkStringProperty.h" #include "mitkPointSet.h" #include "mitkVtkPropRenderer.h" #include "mitkGL.h" //const float selectedColor[]={1.0,0.0,0.6}; //for selected! mitk::PointSetGLMapper2D::PointSetGLMapper2D() : m_Polygon(false), m_ShowPoints(true), m_ShowDistances(false), m_DistancesDecimalDigits(1), m_ShowAngles(false), m_ShowDistantLines(true), m_LineWidth(1) { } mitk::PointSetGLMapper2D::~PointSetGLMapper2D() { } const mitk::PointSet *mitk::PointSetGLMapper2D::GetInput(void) { return static_cast ( GetDataNode()->GetData() ); } void mitk::PointSetGLMapper2D::ApplyAllProperties(mitk::BaseRenderer* renderer) { GLMapper::ApplyColorAndOpacityProperties( renderer ); const mitk::DataNode* node=GetDataNode(); if( node == NULL ) return; node->GetBoolProperty("show contour", m_Polygon); node->GetBoolProperty("close contour", m_PolygonClosed); node->GetBoolProperty("show points", m_ShowPoints); node->GetBoolProperty("show distances", m_ShowDistances); node->GetIntProperty("distance decimal digits", m_DistancesDecimalDigits); node->GetBoolProperty("show angles", m_ShowAngles); node->GetBoolProperty("show distant lines", m_ShowDistantLines); node->GetIntProperty("line width", m_LineWidth); node->GetIntProperty("point line width", m_PointLineWidth); node->GetIntProperty("point 2D size", m_Point2DSize); } static bool makePerpendicularVector2D(const mitk::Vector2D& in, mitk::Vector2D& out) { if((fabs(in[0])>0) && ( (fabs(in[0])>fabs(in[1])) || (in[1] == 0) ) ) { out[0]=-in[1]/in[0]; out[1]=1; out.Normalize(); return true; } else if(fabs(in[1])>0) { out[0]=1; out[1]=-in[0]/in[1]; out.Normalize(); return true; } else return false; } void mitk::PointSetGLMapper2D::Paint( mitk::BaseRenderer *renderer ) { const mitk::DataNode* node=GetDataNode(); if( node == NULL ) return; const int text2dDistance = 10; bool visible = true; GetDataNode()->GetVisibility(visible, renderer, "visible"); if ( !visible) return; // @FIXME: Logik fuer update bool updateNeccesary=true; if (updateNeccesary) { // ok, das ist aus GenerateData kopiert mitk::PointSet::Pointer input = const_cast(this->GetInput()); - // Get the TimeSlicedGeometry of the input object + // Get the TimeGeometry of the input object const TimeGeometry* inputTimeGeometry = input->GetTimeGeometry(); if (( inputTimeGeometry == NULL ) || ( inputTimeGeometry->GetNumberOfTimeSteps() == 0 ) ) { return; } // // get the world time // const Geometry2D* worldGeometry = renderer->GetCurrentWorldGeometry2D(); assert( worldGeometry != NULL ); ScalarType time = worldGeometry->GetTimeBounds()[ 0 ]; // // convert the world time in time steps of the input object // int timeStep=0; if ( time > ScalarTypeNumericTraits::NonpositiveMin() ) timeStep = inputTimeGeometry->TimePointToTimeStep( time ); if ( inputTimeGeometry->IsValidTimeStep( timeStep ) == false ) { return; } mitk::PointSet::DataType::Pointer itkPointSet = input->GetPointSet( timeStep ); if ( itkPointSet.GetPointer() == NULL) { return; } mitk::DisplayGeometry::Pointer displayGeometry = renderer->GetDisplayGeometry(); assert(displayGeometry.IsNotNull()); //apply color and opacity read from the PropertyList this->ApplyAllProperties(renderer); vtkLinearTransform* transform = GetDataNode()->GetVtkTransform(); //List of the Points PointSet::DataType::PointsContainerConstIterator it, end; it = itkPointSet->GetPoints()->Begin(); end = itkPointSet->GetPoints()->End(); //iterator on the additional data of each point PointSet::DataType::PointDataContainerIterator selIt, selEnd; bool pointDataBroken = (itkPointSet->GetPointData()->Size() != itkPointSet->GetPoints()->Size()); selIt = itkPointSet->GetPointData()->Begin(); selEnd = itkPointSet->GetPointData()->End(); int counter = 0; //for writing text int j = 0; //for switching back to old color after using selected color float recallColor[4]; glGetFloatv(GL_CURRENT_COLOR,recallColor); //get the properties for coloring the points float unselectedColor[4] = {1.0, 1.0, 0.0, 1.0};//yellow //check if there is an unselected property if (dynamic_cast(node->GetPropertyList(renderer)->GetProperty("unselectedcolor")) != NULL) { mitk::Color tmpColor = dynamic_cast(this->GetDataNode()->GetPropertyList(renderer)->GetProperty("unselectedcolor"))->GetValue(); unselectedColor[0] = tmpColor[0]; unselectedColor[1] = tmpColor[1]; unselectedColor[2] = tmpColor[2]; unselectedColor[3] = 1.0f; //!!define a new ColorProp to be able to pass alpha value } else if (dynamic_cast(node->GetPropertyList(NULL)->GetProperty("unselectedcolor")) != NULL) { mitk::Color tmpColor = dynamic_cast(this->GetDataNode()->GetPropertyList(NULL)->GetProperty("unselectedcolor"))->GetValue(); unselectedColor[0] = tmpColor[0]; unselectedColor[1] = tmpColor[1]; unselectedColor[2] = tmpColor[2]; unselectedColor[3] = 1.0f; //!!define a new ColorProp to be able to pass alpha value } else { //get the color from the dataNode node->GetColor(unselectedColor, NULL); } //get selected property float selectedColor[4] = {1.0, 0.0, 0.6, 1.0}; if (dynamic_cast(node->GetPropertyList(renderer)->GetProperty("selectedcolor")) != NULL) { mitk::Color tmpColor = dynamic_cast(this->GetDataNode()->GetPropertyList(renderer)->GetProperty("selectedcolor"))->GetValue(); selectedColor[0] = tmpColor[0]; selectedColor[1] = tmpColor[1]; selectedColor[2] = tmpColor[2]; selectedColor[3] = 1.0f; } else if (dynamic_cast(node->GetPropertyList(NULL)->GetProperty("selectedcolor")) != NULL) { mitk::Color tmpColor = dynamic_cast(this->GetDataNode()->GetPropertyList(NULL)->GetProperty("selectedcolor"))->GetValue(); selectedColor[0] = tmpColor[0]; selectedColor[1] = tmpColor[1]; selectedColor[2] = tmpColor[2]; selectedColor[3] = 1.0f; } //check if there is an pointLineWidth property if (dynamic_cast(node->GetPropertyList(renderer)->GetProperty("point line width")) != NULL) { m_PointLineWidth = dynamic_cast(this->GetDataNode()->GetPropertyList(renderer)->GetProperty("point line width"))->GetValue(); } else if (dynamic_cast(node->GetPropertyList(NULL)->GetProperty("point line width")) != NULL) { m_PointLineWidth = dynamic_cast(this->GetDataNode()->GetPropertyList(NULL)->GetProperty("point line width"))->GetValue(); } //check if there is an point 2D size property if (dynamic_cast(node->GetPropertyList(renderer)->GetProperty("point 2D size")) != NULL) { m_Point2DSize = dynamic_cast(this->GetDataNode()->GetPropertyList(renderer)->GetProperty("point 2D size"))->GetValue(); } else if (dynamic_cast(node->GetPropertyList(NULL)->GetProperty("point 2D size")) != NULL) { m_Point2DSize = dynamic_cast(this->GetDataNode()->GetPropertyList(NULL)->GetProperty("point 2D size"))->GetValue(); } Point3D p; // currently visited point Point3D lastP; // last visited point Vector3D vec; // p - lastP Vector3D lastVec; // lastP - point before lastP vec.Fill(0); mitk::Point3D projected_p; // p projected on viewplane Point2D pt2d; // projected_p in display coordinates Point2D lastPt2d; // last projected_p in display coordinates Point2D preLastPt2d;// projected_p in display coordinates before lastPt2d Point2D lastPt2DInPointSet; // The last point in the pointset in display coordinates mitk::PointSet::DataType::PointType plob; plob.Fill(0); itkPointSet->GetPoint( itkPointSet->GetNumberOfPoints()-1, &plob); //map lastPt2DInPointSet to display coordinates float vtkp[3]; itk2vtk(plob, vtkp); transform->TransformPoint(vtkp, vtkp); vtk2itk(vtkp,p); displayGeometry->Project(p, projected_p); displayGeometry->Map(projected_p, lastPt2DInPointSet); displayGeometry->WorldToDisplay(lastPt2DInPointSet, lastPt2DInPointSet); while(it!=end) // iterate over all points { lastP = p; // valid only for counter > 0 lastVec = vec; // valid only for counter > 1 preLastPt2d = lastPt2d; // valid only for counter > 1 lastPt2d = pt2d; // valid only for counter > 0 itk2vtk(it->Value(), vtkp); transform->TransformPoint(vtkp, vtkp); vtk2itk(vtkp,p); vec = p-lastP; // valid only for counter > 0 displayGeometry->Project(p, projected_p); Vector3D diff=p-projected_p; ScalarType scalardiff = diff.GetSquaredNorm(); //MouseOrientation bool isInputDevice=false; bool isRendererSlice = scalardiff < 0.00001; //cause roundoff error if(this->GetDataNode()->GetBoolProperty("inputdevice",isInputDevice) && isInputDevice && !isRendererSlice ) { displayGeometry->Map(projected_p, pt2d); displayGeometry->WorldToDisplay(pt2d, pt2d); //Point size depending of distance to slice /*float p_size = (1/scalardiff)*10*m_Point2DSize; if(p_size < m_Point2DSize * 0.6 ) p_size = m_Point2DSize * 0.6 ; else if ( p_size > m_Point2DSize ) p_size = m_Point2DSize;*/ float p_size = (1/scalardiff)*100.0; if(p_size < 6.0 ) p_size = 6.0 ; else if ( p_size > 10.0 ) p_size = 10.0; //draw Point float opacity = (p_size<8)?0.3:1.0;//don't get the opacity from the node? Feature not a bug! Otehrwise the 2D cross is hardly seen. glColor4f(unselectedColor[0],unselectedColor[1],unselectedColor[2],opacity); glPointSize(p_size); //glShadeModel(GL_FLAT); glBegin (GL_POINTS); glVertex2fv(&pt2d[0]); glEnd (); } //for point set if(!isInputDevice && ( (scalardiff<4.0) || (m_Polygon))) { Point2D tmp; displayGeometry->Map(projected_p, pt2d); displayGeometry->WorldToDisplay(pt2d, pt2d); Vector2D horz,vert; horz[0]=(float)m_Point2DSize-scalardiff*2; horz[1]=0; vert[0]=0; vert[1]=(float)m_Point2DSize-scalardiff*2; // now paint text if available if (dynamic_cast(this->GetDataNode() ->GetProperty("label")) != NULL) { const char * pointLabel = dynamic_cast( this->GetDataNode()->GetProperty("label"))->GetValue(); std::string l = pointLabel; if (input->GetSize()>1) { // char buffer[20]; // sprintf(buffer,"%d",it->Index()); std::stringstream ss; ss << it->Index(); l.append(ss.str()); } if (unselectedColor != NULL) { mitk::VtkPropRenderer* OpenGLrenderer = dynamic_cast( renderer ); float rgb[3];//yellow rgb[0] = unselectedColor[0]; rgb[1] = unselectedColor[1]; rgb[2] = unselectedColor[2]; OpenGLrenderer->WriteSimpleText(l, pt2d[0] + text2dDistance, pt2d[1] + text2dDistance,rgb[0], rgb[1],rgb[2]); } else { mitk::VtkPropRenderer* OpenGLrenderer = dynamic_cast( renderer ); OpenGLrenderer->WriteSimpleText(l, pt2d[0] + text2dDistance, pt2d[1] + text2dDistance,0.0,1.0,0.0); } } if((m_ShowPoints) && (scalardiff<4.0)) { //check if the point is to be marked as selected if(selIt != selEnd || pointDataBroken) { bool addAsSelected = false; if (pointDataBroken) addAsSelected = false; else if (selIt->Value().selected) addAsSelected = true; else addAsSelected = false; if (addAsSelected) { horz[0]=(float)m_Point2DSize; vert[1]=(float)m_Point2DSize; glColor3f(selectedColor[0],selectedColor[1],selectedColor[2]); glLineWidth(m_PointLineWidth); //a diamond around the point with the selected color glBegin (GL_LINE_LOOP); tmp=pt2d-horz; glVertex2fv(&tmp[0]); tmp=pt2d+vert; glVertex2fv(&tmp[0]); tmp=pt2d+horz; glVertex2fv(&tmp[0]); tmp=pt2d-vert; glVertex2fv(&tmp[0]); glEnd (); glLineWidth(1); //the actual point in the specified color to see the usual color of the point glColor3f(unselectedColor[0],unselectedColor[1],unselectedColor[2]); glPointSize(1); glBegin (GL_POINTS); tmp=pt2d; glVertex2fv(&tmp[0]); glEnd (); } else //if not selected { glColor3f(unselectedColor[0],unselectedColor[1],unselectedColor[2]); glLineWidth(m_PointLineWidth); //drawing crosses glBegin (GL_LINES); tmp=pt2d-horz; glVertex2fv(&tmp[0]); tmp=pt2d+horz; glVertex2fv(&tmp[0]); tmp=pt2d-vert; glVertex2fv(&tmp[0]); tmp=pt2d+vert; glVertex2fv(&tmp[0]); glEnd (); glLineWidth(1); } } } bool drawLinesEtc = true; if (!m_ShowDistantLines && counter > 0) // check, whether this line should be drawn { ScalarType currentDistance = displayGeometry->GetWorldGeometry()->SignedDistance(p); ScalarType lastDistance = displayGeometry->GetWorldGeometry()->SignedDistance(lastP); if ( currentDistance * lastDistance > 0.5 ) // points on same side of plane drawLinesEtc = false; } // draw a line if ((m_Polygon && counter>0 && drawLinesEtc) || (m_Polygon && m_PolygonClosed && drawLinesEtc)) { if ((counter == 0) && ( m_PolygonClosed)) { lastPt2d = lastPt2DInPointSet; } //get contour color property float contourColor[4] = {unselectedColor[0], unselectedColor[1], unselectedColor[2], unselectedColor[3]};//so if no property set, then use unselected color if (dynamic_cast(node->GetPropertyList(renderer)->GetProperty("contourcolor")) != NULL) { mitk::Color tmpColor = dynamic_cast(this->GetDataNode()->GetPropertyList(renderer)->GetProperty("contourcolor"))->GetValue(); contourColor[0] = tmpColor[0]; contourColor[1] = tmpColor[1]; contourColor[2] = tmpColor[2]; contourColor[3] = 1.0f; } else if (dynamic_cast(node->GetPropertyList(NULL)->GetProperty("contourcolor")) != NULL) { mitk::Color tmpColor = dynamic_cast(this->GetDataNode()->GetPropertyList(NULL)->GetProperty("contourcolor"))->GetValue(); contourColor[0] = tmpColor[0]; contourColor[1] = tmpColor[1]; contourColor[2] = tmpColor[2]; contourColor[3] = 1.0f; } //set this color glColor3f(contourColor[0],contourColor[1],contourColor[2]); glLineWidth( m_LineWidth ); glBegin (GL_LINES); glVertex2fv(&pt2d[0]); glVertex2fv(&lastPt2d[0]); glEnd (); glLineWidth(1.0); if(m_ShowDistances) // calculate and print a distance { std::stringstream buffer; float distance = vec.GetNorm(); buffer<( renderer ); OpenGLrenderer->WriteSimpleText(buffer.str(), pos2d[0], pos2d[1]); //this->WriteTextXY(pos2d[0], pos2d[1], buffer.str(),renderer); } if(m_ShowAngles && counter > 1 ) // calculate and print the angle btw. two lines { std::stringstream buffer; //buffer << angle(vec.Get_vnl_vector(), -lastVec.Get_vnl_vector())*180/vnl_math::pi << "�"; buffer << angle(vec.Get_vnl_vector(), -lastVec.Get_vnl_vector())*180/vnl_math::pi << (char)176; Vector2D vec2d = pt2d-lastPt2d; vec2d.Normalize(); Vector2D lastVec2d = lastPt2d-preLastPt2d; lastVec2d.Normalize(); vec2d=vec2d-lastVec2d; vec2d.Normalize(); Vector2D pos2d = lastPt2d.GetVectorFromOrigin()+vec2d*text2dDistance*text2dDistance; mitk::VtkPropRenderer* OpenGLrenderer = dynamic_cast( renderer ); OpenGLrenderer->WriteSimpleText(buffer.str(), pos2d[0], pos2d[1]); //this->WriteTextXY(pos2d[0], pos2d[1], buffer.str(),renderer); } } counter++; } ++it; if(selIt != selEnd && !pointDataBroken) ++selIt; j++; } //recall the color to the same color before this drawing glColor3f(recallColor[0],recallColor[1],recallColor[2]); } } void mitk::PointSetGLMapper2D::SetDefaultProperties(mitk::DataNode* node, mitk::BaseRenderer* renderer, bool overwrite) { node->AddProperty( "line width", mitk::IntProperty::New(2), renderer, overwrite ); // width of the line from one point to another node->AddProperty( "point line width", mitk::IntProperty::New(1), renderer, overwrite ); //width of the cross marking a point node->AddProperty( "point 2D size", mitk::IntProperty::New(8), renderer, overwrite ); // length of the cross marking a point // length of an edge of the box marking a point node->AddProperty( "show contour", mitk::BoolProperty::New(false), renderer, overwrite ); // contour of the line between points node->AddProperty( "close contour", mitk::BoolProperty::New(false), renderer, overwrite ); node->AddProperty( "show points", mitk::BoolProperty::New(true), renderer, overwrite ); //show or hide points node->AddProperty( "show distances", mitk::BoolProperty::New(false), renderer, overwrite ); //show or hide distance measure (not always available) node->AddProperty( "distance decimal digits", mitk::IntProperty::New(2), renderer, overwrite ); //set the number of decimal digits to be shown node->AddProperty( "show angles", mitk::BoolProperty::New(false), renderer, overwrite ); //show or hide angle measurement (not always available) node->AddProperty( "show distant lines", mitk::BoolProperty::New(false), renderer, overwrite ); //show the line between to points from a distant view (equals "always on top" option) node->AddProperty( "layer", mitk::IntProperty::New(1), renderer, overwrite ); // default to draw pointset above images (they have a default layer of 0) Superclass::SetDefaultProperties(node, renderer, overwrite); } diff --git a/Core/Code/Rendering/mitkSurfaceGLMapper2D.cpp b/Core/Code/Rendering/mitkSurfaceGLMapper2D.cpp index ef4f97b6f8..0c98a585ba 100644 --- a/Core/Code/Rendering/mitkSurfaceGLMapper2D.cpp +++ b/Core/Code/Rendering/mitkSurfaceGLMapper2D.cpp @@ -1,544 +1,544 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include #include "mitkSurfaceGLMapper2D.h" #include "mitkBaseRenderer.h" #include "mitkPlaneGeometry.h" #include "mitkSurface.h" #include "mitkColorProperty.h" #include "mitkProperties.h" #include "mitkVtkScalarModeProperty.h" #include "mitkAbstractTransformGeometry.h" #include "mitkLookupTableProperty.h" #include #include #include #include #include #include #include #include #include #include #include #include #include mitk::SurfaceGLMapper2D::SurfaceGLMapper2D() : m_Plane( vtkPlane::New() ), m_Cutter( vtkCutter::New() ), m_LUT( vtkLookupTable::New() ), m_PointLocator( vtkPKdTree::New() ), m_Stripper( vtkStripper::New() ), m_DrawNormals(false), m_FrontNormalLengthInPixels(10.0), m_BackNormalLengthInPixels(10.0) { // default for normals on front side = green m_FrontSideColor[0] = 0.0; m_FrontSideColor[1] = 1.0; m_FrontSideColor[2] = 0.0; m_FrontSideColor[3] = 1.0; // default for normals on back side = red m_BackSideColor[0] = 1.0; m_BackSideColor[1] = 0.0; m_BackSideColor[2] = 0.0; m_BackSideColor[3] = 1.0; // default for line color = yellow m_LineColor[0] = 1.0; m_LineColor[1] = 1.0; m_LineColor[2] = 0.0; m_LineColor[3] = 1.0; m_Cutter->SetCutFunction(m_Plane); m_Cutter->GenerateValues(1,0,1); m_LUT->SetTableRange(0,255); m_LUT->SetNumberOfColors(255); m_LUT->SetRampToLinear(); m_LUT->Build(); } mitk::SurfaceGLMapper2D::~SurfaceGLMapper2D() { m_Plane->Delete(); m_Cutter->Delete(); m_LUT->Delete(); m_PointLocator->Delete(); m_Stripper->Delete(); } const mitk::Surface *mitk::SurfaceGLMapper2D::GetInput(void) { if(m_Surface.IsNotNull()) return m_Surface; return static_cast ( GetDataNode()->GetData() ); } void mitk::SurfaceGLMapper2D::SetDataNode( mitk::DataNode* node ) { Superclass::SetDataNode( node ); bool useCellData; if (dynamic_cast(node->GetProperty("deprecated useCellDataForColouring")) == NULL) useCellData = false; else useCellData = dynamic_cast(node->GetProperty("deprecated useCellDataForColouring"))->GetValue(); if (!useCellData) { // search min/max point scalars over all time steps vtkFloatingPointType dataRange[2] = {0,0}; vtkFloatingPointType range[2]; Surface::Pointer input = const_cast< Surface* >(dynamic_cast( this->GetDataNode()->GetData() )); if(input.IsNull()) return; const TimeGeometry::Pointer inputTimeGeometry = input->GetTimeGeometry(); if(( inputTimeGeometry.IsNull() ) || ( inputTimeGeometry->GetNumberOfTimeSteps() == 0 ) ) return; for (unsigned int timestep=0; timestepGetNumberOfTimeSteps(); timestep++) { vtkPolyData * vtkpolydata = input->GetVtkPolyData( timestep ); if((vtkpolydata==NULL) || (vtkpolydata->GetNumberOfPoints() < 1 )) continue; vtkDataArray *vpointscalars = vtkpolydata->GetPointData()->GetScalars(); if (vpointscalars) { vpointscalars->GetRange( range, 0 ); if (dataRange[0]==0 && dataRange[1]==0) { dataRange[0] = range[0]; dataRange[1] = range[1]; } else { if (range[0] < dataRange[0]) dataRange[0] = range[0]; if (range[1] > dataRange[1]) dataRange[1] = range[1]; } } } if (dataRange[1] - dataRange[0] > 0) { m_LUT->SetTableRange( dataRange ); m_LUT->Build(); } } } void mitk::SurfaceGLMapper2D::Paint(mitk::BaseRenderer * renderer) { bool visible = true; GetDataNode()->GetVisibility(visible, renderer, "visible"); if(!visible) return; Surface::Pointer input = const_cast(this->GetInput()); if(input.IsNull()) return; // - // get the TimeSlicedGeometry of the input object + // get the TimeGeometry of the input object // const TimeGeometry* inputTimeGeometry = input->GetTimeGeometry(); if(( inputTimeGeometry == NULL ) || ( inputTimeGeometry->GetNumberOfTimeSteps() == 0 ) ) return; if (dynamic_cast(this->GetDataNode()->GetProperty("line width")) == NULL) m_LineWidth = 1; else m_LineWidth = dynamic_cast(this->GetDataNode()->GetProperty("line width"))->GetValue(); // // get the world time // Geometry2D::ConstPointer worldGeometry = renderer->GetCurrentWorldGeometry2D(); assert( worldGeometry.IsNotNull() ); ScalarType time = worldGeometry->GetTimeBounds()[ 0 ]; int timestep=0; if( time > ScalarTypeNumericTraits::NonpositiveMin() ) timestep = inputTimeGeometry->TimePointToTimeStep( time ); // int timestep = this->GetTimestep(); if( inputTimeGeometry->IsValidTimeStep( timestep ) == false ) return; vtkPolyData * vtkpolydata = input->GetVtkPolyData( timestep ); if((vtkpolydata==NULL) || (vtkpolydata->GetNumberOfPoints() < 1 )) return; PlaneGeometry::ConstPointer worldPlaneGeometry = dynamic_cast(worldGeometry.GetPointer()); //apply color and opacity read from the PropertyList this->ApplyAllProperties(renderer); if (m_DrawNormals) { m_PointLocator->SetDataSet( vtkpolydata ); m_PointLocator->BuildLocatorFromPoints( vtkpolydata->GetPoints() ); } if(vtkpolydata!=NULL) { Point3D point; Vector3D normal; //Check if Lookup-Table is already given, else use standard one. vtkFloatingPointType* scalarLimits = m_LUT->GetTableRange(); vtkFloatingPointType scalarsMin = scalarLimits[0], scalarsMax = scalarLimits[1]; vtkLookupTable *lut;// = vtkLookupTable::New(); LookupTableProperty::Pointer lookupTableProp; this->GetDataNode()->GetProperty(lookupTableProp, "LookupTable", renderer); if (lookupTableProp.IsNotNull() ) { lut = lookupTableProp->GetLookupTable()->GetVtkLookupTable(); if (dynamic_cast(this->GetDataNode()->GetProperty("ScalarsRangeMinimum")) != NULL) scalarsMin = dynamic_cast(this->GetDataNode()->GetProperty("ScalarsRangeMinimum"))->GetValue(); if (dynamic_cast(this->GetDataNode()->GetProperty("ScalarsRangeMaximum")) != NULL) scalarsMax = dynamic_cast(this->GetDataNode()->GetProperty("ScalarsRangeMaximum"))->GetValue(); // check if the scalar range has been changed, e.g. manually, for the data tree node, and rebuild the LUT if necessary. double* oldRange = lut->GetTableRange(); if( oldRange[0] != scalarsMin || oldRange[1] != scalarsMax ) { lut->SetTableRange(scalarsMin, scalarsMax); lut->Build(); } } else { lut = m_LUT; } vtkLinearTransform * vtktransform = GetDataNode()->GetVtkTransform(timestep); if(worldPlaneGeometry.IsNotNull()) { // set up vtkPlane according to worldGeometry point=worldPlaneGeometry->GetOrigin(); normal=worldPlaneGeometry->GetNormal(); normal.Normalize(); m_Plane->SetTransform((vtkAbstractTransform*)NULL); } else { AbstractTransformGeometry::ConstPointer worldAbstractGeometry = dynamic_cast(renderer->GetCurrentWorldGeometry2D()); if(worldAbstractGeometry.IsNotNull()) { AbstractTransformGeometry::ConstPointer surfaceAbstractGeometry = dynamic_cast(input->GetTimeGeometry()->GetGeometryForTimeStep(0)); if(surfaceAbstractGeometry.IsNotNull()) //@todo substitude by operator== after implementation, see bug id 28 { PaintCells(renderer, vtkpolydata, worldGeometry, renderer->GetDisplayGeometry(), vtktransform, lut); return; } else { //@FIXME: does not work correctly. Does m_Plane->SetTransform really transforms a "flat plane" into a "curved plane"? return; // set up vtkPlane according to worldGeometry point=const_cast(worldAbstractGeometry->GetParametricBoundingBox())->GetMinimum(); FillVector3D(normal, 0, 0, 1); m_Plane->SetTransform(worldAbstractGeometry->GetVtkAbstractTransform()->GetInverse()); } } else return; } vtkFloatingPointType vp[3], vnormal[3]; vnl2vtk(point.Get_vnl_vector(), vp); vnl2vtk(normal.Get_vnl_vector(), vnormal); //normally, we would need to transform the surface and cut the transformed surface with the cutter. //This might be quite slow. Thus, the idea is, to perform an inverse transform of the plane instead. //@todo It probably does not work for scaling operations yet:scaling operations have to be //dealed with after the cut is performed by scaling the contour. vtkLinearTransform * inversetransform = vtktransform->GetLinearInverse(); inversetransform->TransformPoint(vp, vp); inversetransform->TransformNormalAtPoint(vp, vnormal, vnormal); m_Plane->SetOrigin(vp); m_Plane->SetNormal(vnormal); //set data into cutter m_Cutter->SetInput(vtkpolydata); m_Cutter->Update(); // m_Cutter->GenerateCutScalarsOff(); // m_Cutter->SetSortByToSortByCell(); if (m_DrawNormals) { m_Stripper->SetInput( m_Cutter->GetOutput() ); // calculate the cut m_Stripper->Update(); PaintCells(renderer, m_Stripper->GetOutput(), worldGeometry, renderer->GetDisplayGeometry(), vtktransform, lut, vtkpolydata); } else { PaintCells(renderer, m_Cutter->GetOutput(), worldGeometry, renderer->GetDisplayGeometry(), vtktransform, lut, vtkpolydata); } } } void mitk::SurfaceGLMapper2D::PaintCells(mitk::BaseRenderer* renderer, vtkPolyData* contour, const Geometry2D* worldGeometry, const DisplayGeometry* displayGeometry, vtkLinearTransform * vtktransform, vtkLookupTable *lut, vtkPolyData* original3DObject) { // deprecated settings bool usePointData = false; bool useCellData = false; this->GetDataNode()->GetBoolProperty("deprecated useCellDataForColouring", useCellData); bool scalarVisibility = false; this->GetDataNode()->GetBoolProperty("scalar visibility", scalarVisibility); if(scalarVisibility) { VtkScalarModeProperty* scalarMode; if(this->GetDataNode()->GetProperty(scalarMode, "scalar mode", renderer)) { if( (scalarMode->GetVtkScalarMode() == VTK_SCALAR_MODE_USE_POINT_DATA) || (scalarMode->GetVtkScalarMode() == VTK_SCALAR_MODE_DEFAULT) ) { usePointData = true; } if(scalarMode->GetVtkScalarMode() == VTK_SCALAR_MODE_USE_CELL_DATA) { useCellData = true; } } else { usePointData = true; } } vtkPoints *vpoints = contour->GetPoints(); vtkDataArray *vpointscalars = contour->GetPointData()->GetScalars(); vtkCellArray *vlines = contour->GetLines(); vtkDataArray* vcellscalars = contour->GetCellData()->GetScalars(); Point3D p; Point2D p2d, last; int i, j; int numberOfLines = vlines->GetNumberOfCells(); glLineWidth( m_LineWidth ); glBegin (GL_LINES); glColor4fv(m_LineColor); double distanceSinceLastNormal(0.0); vlines->InitTraversal(); for(i=0;iGetNextCell(cellSize, cell); vpoints->GetPoint(cell[0], vp); //take transformation via vtktransform into account vtktransform->TransformPoint(vp, vp); vtk2itk(vp, p); //convert 3D point (in mm) to 2D point on slice (also in mm) worldGeometry->Map(p, p2d); //convert point (until now mm and in world coordinates) to display coordinates (units ) displayGeometry->WorldToDisplay(p2d, p2d); last=p2d; for(j=1; jGetPoint(cell[j], vp); Point3D originalPoint; vtk2itk(vp, originalPoint); //take transformation via vtktransform into account vtktransform->TransformPoint(vp, vp); vtk2itk(vp, p); //convert 3D point (in mm) to 2D point on slice (also in mm) worldGeometry->Map(p, p2d); //convert point (until now mm and in world coordinates) to display coordinates (units ) displayGeometry->WorldToDisplay(p2d, p2d); vtkFloatingPointType color[3]; if (useCellData && vcellscalars != NULL ) { // color each cell according to cell data lut->GetColor( vcellscalars->GetComponent(i,0),color); glColor3f(color[0],color[1],color[2]); glVertex2f(last[0], last[1]); glVertex2f(p2d[0], p2d[1]); } else if (usePointData && vpointscalars != NULL ) { lut->GetColor( vpointscalars->GetComponent(cell[j-1],0),color); glColor3f(color[0],color[1],color[2]); glVertex2f(last[0], last[1]); lut->GetColor( vpointscalars->GetComponent(cell[j],0),color); glColor3f(color[0],color[1],color[2]); glVertex2f(p2d[0], p2d[1]); } else { glVertex2f(last[0], last[1]); glVertex2f(p2d[0], p2d[1]); // draw normals ? if (m_DrawNormals && original3DObject) { distanceSinceLastNormal += sqrt((p2d[0]-last[0])*(p2d[0]-last[0]) + (p2d[1]-last[1])*(p2d[1]-last[1])); if (distanceSinceLastNormal >= 5.0) { distanceSinceLastNormal = 0.0; vtkPointData* pointData = original3DObject->GetPointData(); if (!pointData) break; vtkDataArray* normalsArray = pointData->GetNormals(); if (!normalsArray) break; // find 3D point closest to the currently drawn point double distance(0.0); vtkIdType closestPointId = m_PointLocator->FindClosestPoint(originalPoint[0], originalPoint[1], originalPoint[2], distance); if (closestPointId >= 0) { // find normal of 3D object at this 3D point double* normal = normalsArray->GetTuple3(closestPointId); double transformedNormal[3]; vtktransform->TransformNormal(normal, transformedNormal); Vector3D normalITK; vtk2itk(transformedNormal, normalITK); normalITK.Normalize(); // calculate a point (point from the cut 3D object) + (normal vector of closest point) Point3D tip3D = p + normalITK; // map this point into our 2D coordinate system Point2D tip2D; worldGeometry->Map(tip3D, tip2D); displayGeometry->WorldToDisplay(tip2D, tip2D); // calculate 2D vector from point to point+normal, normalize it to standard length Vector2D tipVectorGLFront = tip2D - p2d; tipVectorGLFront.Normalize(); tipVectorGLFront *= m_FrontNormalLengthInPixels; Vector2D tipVectorGLBack = p2d - tip2D; tipVectorGLBack.Normalize(); tipVectorGLBack *= m_BackNormalLengthInPixels; Point2D tipPoint2D = p2d + tipVectorGLFront; Point2D backTipPoint2D = p2d + tipVectorGLBack; // draw normalized mapped normal vector glColor4f(m_BackSideColor[0], m_BackSideColor[1], m_BackSideColor[2], m_BackSideColor[3]); // red backside glVertex2f(p2d[0], p2d[1]); glVertex2f(tipPoint2D[0], tipPoint2D[1]); glColor4f(m_FrontSideColor[0], m_FrontSideColor[1], m_FrontSideColor[2], m_FrontSideColor[3]); // green backside glVertex2f(p2d[0], p2d[1]); glVertex2f(backTipPoint2D[0], backTipPoint2D[1]); glColor4fv(m_LineColor); // back to line color } } } } last=p2d; } } glEnd(); glLineWidth(1.0); } void mitk::SurfaceGLMapper2D::SetDefaultProperties(mitk::DataNode* node, mitk::BaseRenderer* renderer, bool overwrite) { node->AddProperty( "line width", IntProperty::New(2), renderer, overwrite ); node->AddProperty( "scalar mode", VtkScalarModeProperty::New(), renderer, overwrite ); node->AddProperty( "draw normals 2D", BoolProperty::New(false), renderer, overwrite ); node->AddProperty( "invert normals", BoolProperty::New(false), renderer, overwrite ); node->AddProperty( "front color", ColorProperty::New(0.0, 1.0, 0.0), renderer, overwrite ); node->AddProperty( "back color", ColorProperty::New(1.0, 0.0, 0.0), renderer, overwrite ); node->AddProperty( "front normal lenth (px)", FloatProperty::New(10.0), renderer, overwrite ); node->AddProperty( "back normal lenth (px)", FloatProperty::New(10.0), renderer, overwrite ); node->AddProperty( "layer", mitk::IntProperty::New(100), renderer, overwrite); Superclass::SetDefaultProperties(node, renderer, overwrite); } void mitk::SurfaceGLMapper2D::ApplyAllProperties(mitk::BaseRenderer* renderer) { ApplyColorAndOpacityProperties(renderer); DataNode * node = GetDataNode(); if(node == NULL) { return; } node->GetBoolProperty("draw normals 2D", m_DrawNormals, renderer); // check for color and opacity properties, use it for rendering if they exists node->GetColor(m_LineColor, renderer, "color"); node->GetOpacity(m_LineColor[3], renderer, "opacity"); bool invertNormals(false); node->GetBoolProperty("invert normals", invertNormals, renderer); if (!invertNormals) { node->GetColor(m_FrontSideColor, renderer, "front color"); node->GetOpacity(m_FrontSideColor[3], renderer, "opacity"); node->GetColor(m_BackSideColor, renderer, "back color"); node->GetOpacity(m_BackSideColor[3], renderer, "opacity"); node->GetFloatProperty( "front normal lenth (px)", m_FrontNormalLengthInPixels, renderer ); node->GetFloatProperty( "back normal lenth (px)", m_BackNormalLengthInPixels, renderer ); } else { node->GetColor(m_FrontSideColor, renderer, "back color"); node->GetOpacity(m_FrontSideColor[3], renderer, "opacity"); node->GetColor(m_BackSideColor, renderer, "front color"); node->GetOpacity(m_BackSideColor[3], renderer, "opacity"); node->GetFloatProperty( "back normal lenth (px)", m_FrontNormalLengthInPixels, renderer ); node->GetFloatProperty( "front normal lenth (px)", m_BackNormalLengthInPixels, renderer ); } } diff --git a/Core/Code/Rendering/mitkVtkPropRenderer.cpp b/Core/Code/Rendering/mitkVtkPropRenderer.cpp index 22e1a83215..c8f64b3e75 100644 --- a/Core/Code/Rendering/mitkVtkPropRenderer.cpp +++ b/Core/Code/Rendering/mitkVtkPropRenderer.cpp @@ -1,927 +1,927 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkVtkPropRenderer.h" // MAPPERS #include "mitkMapper.h" #include "mitkImageVtkMapper2D.h" #include "mitkVtkMapper.h" #include "mitkGLMapper.h" #include "mitkGeometry2DDataVtkMapper3D.h" #include "mitkPointSetGLMapper2D.h" #include "mitkImageSliceSelector.h" #include "mitkRenderingManager.h" #include "mitkGL.h" #include "mitkGeometry3D.h" #include "mitkDisplayGeometry.h" #include "mitkLevelWindow.h" #include "mitkCameraController.h" #include "mitkVtkInteractorCameraController.h" #include "mitkPlaneGeometry.h" #include "mitkProperties.h" #include "mitkSurface.h" #include "mitkNodePredicateDataType.h" #include "mitkVtkInteractorStyle.h" // VTK #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include mitk::VtkPropRenderer::VtkPropRenderer( const char* name, vtkRenderWindow * renWin, mitk::RenderingManager* rm ) : BaseRenderer(name,renWin, rm), m_VtkMapperPresent(false), m_CameraInitializedForMapperID(0) { didCount=false; m_WorldPointPicker = vtkWorldPointPicker::New(); m_PointPicker = vtkPointPicker::New(); m_PointPicker->SetTolerance( 0.0025 ); m_CellPicker = vtkCellPicker::New(); m_CellPicker->SetTolerance( 0.0025 ); mitk::Geometry2DDataVtkMapper3D::Pointer geometryMapper = mitk::Geometry2DDataVtkMapper3D::New(); m_CurrentWorldGeometry2DMapper = geometryMapper; m_CurrentWorldGeometry2DNode->SetMapper(2, geometryMapper); m_LightKit = vtkLightKit::New(); m_LightKit->AddLightsToRenderer(m_VtkRenderer); m_PickingMode = WorldPointPicking; m_TextRenderer = vtkRenderer::New(); m_TextRenderer->SetRenderWindow(renWin); m_TextRenderer->SetInteractive(0); m_TextRenderer->SetErase(0); } /*! \brief Destructs the VtkPropRenderer. */ mitk::VtkPropRenderer::~VtkPropRenderer() { // Workaround for GLDisplayList Bug { m_MapperID=0; checkState(); } if (m_LightKit != NULL) m_LightKit->Delete(); if (m_VtkRenderer!=NULL) { m_CameraController = NULL; m_VtkRenderer->Delete(); m_VtkRenderer = NULL; } else m_CameraController = NULL; if (m_WorldPointPicker != NULL) m_WorldPointPicker->Delete(); if (m_PointPicker != NULL) m_PointPicker->Delete(); if (m_CellPicker != NULL) m_CellPicker->Delete(); if (m_TextRenderer != NULL) m_TextRenderer->Delete(); } void mitk::VtkPropRenderer::SetDataStorage( mitk::DataStorage* storage ) { if ( storage == NULL ) return; BaseRenderer::SetDataStorage(storage); static_cast(m_CurrentWorldGeometry2DMapper.GetPointer())->SetDataStorageForTexture( m_DataStorage.GetPointer() ); // Compute the geometry from the current data tree bounds and set it as world geometry this->SetWorldGeometryToDataStorageBounds(); } bool mitk::VtkPropRenderer::SetWorldGeometryToDataStorageBounds() { if ( m_DataStorage.IsNull() ) return false; //initialize world geometry - mitk::TimeSlicedGeometry::Pointer geometry = m_DataStorage->ComputeVisibleBoundingGeometry3D( NULL, "includeInBoundingBox" ); + mitk::TimeGeometry::Pointer geometry = m_DataStorage->ComputeVisibleBoundingGeometry3D( NULL, "includeInBoundingBox" ); if ( geometry.IsNull() ) return false; - this->SetWorldGeometry(geometry); + this->SetWorldTimeGeometry(geometry); //this->GetDisplayGeometry()->SetSizeInDisplayUnits( this->m_TextRenderer->GetRenderWindow()->GetSize()[0], this->m_TextRenderer->GetRenderWindow()->GetSize()[1] ); this->GetDisplayGeometry()->Fit(); this->GetVtkRenderer()->ResetCamera(); this->Modified(); return true; } /*! \brief Called by the vtkMitkRenderProp in order to start MITK rendering process. */ int mitk::VtkPropRenderer::Render(mitk::VtkPropRenderer::RenderType type) { // Do we have objects to render? if ( this->GetEmptyWorldGeometry()) return 0; if ( m_DataStorage.IsNull()) return 0; // Update mappers and prepare mapper queue if (type == VtkPropRenderer::Opaque) this->PrepareMapperQueue(); //go through the generated list and let the sorted mappers paint bool lastVtkBased = true; //bool sthVtkBased = false; for(MappersMapType::iterator it = m_MappersMap.begin(); it != m_MappersMap.end(); it++) { Mapper * mapper = (*it).second; VtkMapper* vtkmapper = dynamic_cast(mapper); if(vtkmapper) { //sthVtkBased = true; if(!lastVtkBased) { Disable2DOpenGL(); lastVtkBased = true; } } else if(lastVtkBased) { Enable2DOpenGL(); lastVtkBased = false; } mapper->MitkRender(this, type); } if (lastVtkBased == false) Disable2DOpenGL(); // Render text if (type == VtkPropRenderer::Overlay) { if (m_TextCollection.size() > 0) { for (TextMapType::iterator it = m_TextCollection.begin(); it != m_TextCollection.end() ; it++) m_TextRenderer->AddViewProp((*it).second); m_TextRenderer->Render(); } } return 1; } /*! \brief PrepareMapperQueue iterates the datatree PrepareMapperQueue iterates the datatree in order to find mappers which shall be rendered. Also, it sortes the mappers wrt to their layer. */ void mitk::VtkPropRenderer::PrepareMapperQueue() { // variable for counting LOD-enabled mappers m_NumberOfVisibleLODEnabledMappers = 0; // Do we have to update the mappers ? if ( m_LastUpdateTime < GetMTime() || m_LastUpdateTime < GetDisplayGeometry()->GetMTime() ) { Update(); } else if (m_MapperID>=1 && m_MapperID < 6) Update(); // remove all text properties before mappers will add new ones m_TextRenderer->RemoveAllViewProps(); for ( unsigned int i=0; iDelete(); } m_TextCollection.clear(); // clear priority_queue m_MappersMap.clear(); int mapperNo = 0; //DataStorage if( m_DataStorage.IsNull() ) return; DataStorage::SetOfObjects::ConstPointer allObjects = m_DataStorage->GetAll(); for (DataStorage::SetOfObjects::ConstIterator it = allObjects->Begin(); it != allObjects->End(); ++it) { DataNode::Pointer node = it->Value(); if ( node.IsNull() ) continue; mitk::Mapper::Pointer mapper = node->GetMapper(m_MapperID); if ( mapper.IsNull() ) continue; bool visible = true; node->GetVisibility(visible, this, "visible"); // The information about LOD-enabled mappers is required by RenderingManager if ( mapper->IsLODEnabled( this ) && visible ) { ++m_NumberOfVisibleLODEnabledMappers; } // mapper without a layer property get layer number 1 int layer = 1; node->GetIntProperty("layer", layer, this); int nr = (layer<<16) + mapperNo; m_MappersMap.insert( std::pair< int, Mapper * >( nr, mapper ) ); mapperNo++; } } /*! \brief Enable2DOpenGL() and Disable2DOpenGL() are used to switch between 2D rendering (orthographic projection) and 3D rendering (perspective projection) */ void mitk::VtkPropRenderer::Enable2DOpenGL() { GLint iViewport[4]; // Get a copy of the viewport glGetIntegerv( GL_VIEWPORT, iViewport ); // Save a copy of the projection matrix so that we can restore it // when it's time to do 3D rendering again. glMatrixMode( GL_PROJECTION ); glPushMatrix(); glLoadIdentity(); // Set up the orthographic projection glOrtho( iViewport[0], iViewport[0]+iViewport[2], iViewport[1], iViewport[1]+iViewport[3], -1.0, 1.0 ); glMatrixMode( GL_MODELVIEW ); glPushMatrix(); glLoadIdentity(); // Make sure depth testing and lighting are disabled for 2D rendering until // we are finished rendering in 2D glPushAttrib( GL_DEPTH_BUFFER_BIT | GL_LIGHTING_BIT ); glDisable( GL_DEPTH_TEST ); glDisable( GL_LIGHTING ); // disable the texturing here so crosshair is painted in the correct colors // vtk will reenable texturing every time it is needed glDisable( GL_TEXTURE_1D ); glDisable( GL_TEXTURE_2D ); glLineWidth(1.0); } /*! \brief Initialize the VtkPropRenderer Enable2DOpenGL() and Disable2DOpenGL() are used to switch between 2D rendering (orthographic projection) and 3D rendering (perspective projection) */ void mitk::VtkPropRenderer::Disable2DOpenGL() { glPopAttrib(); glMatrixMode( GL_PROJECTION ); glPopMatrix(); glMatrixMode( GL_MODELVIEW ); glPopMatrix(); } void mitk::VtkPropRenderer::Update(mitk::DataNode* datatreenode) { if(datatreenode!=NULL) { mitk::Mapper::Pointer mapper = datatreenode->GetMapper(m_MapperID); if(mapper.IsNotNull()) { GLMapper* glmapper=dynamic_cast(mapper.GetPointer()); if(GetDisplayGeometry()->IsValid()) { if(glmapper != NULL) { glmapper->Update(this); m_VtkMapperPresent=false; } else { VtkMapper* vtkmapper=dynamic_cast(mapper.GetPointer()); if(vtkmapper != NULL) { vtkmapper->Update(this); vtkmapper->UpdateVtkTransform(this); m_VtkMapperPresent=true; } } } } } } void mitk::VtkPropRenderer::Update() { if( m_DataStorage.IsNull() ) return; m_VtkMapperPresent = false; mitk::DataStorage::SetOfObjects::ConstPointer all = m_DataStorage->GetAll(); for (mitk::DataStorage::SetOfObjects::ConstIterator it = all->Begin(); it != all->End(); ++it) Update(it->Value()); Modified(); m_LastUpdateTime = GetMTime(); } /*! \brief This method is called from the two Constructors */ void mitk::VtkPropRenderer::InitRenderer(vtkRenderWindow* renderWindow) { BaseRenderer::InitRenderer(renderWindow); if(renderWindow == NULL) { m_InitNeeded = false; m_ResizeNeeded = false; return; } m_InitNeeded = true; m_ResizeNeeded = true; m_LastUpdateTime = 0; } /*! \brief Resize the OpenGL Window */ void mitk::VtkPropRenderer::Resize(int w, int h) { BaseRenderer::Resize(w, h); m_RenderingManager->RequestUpdate(this->GetRenderWindow()); } void mitk::VtkPropRenderer::InitSize(int w, int h) { m_RenderWindow->SetSize(w,h); Superclass::InitSize(w, h); Modified(); Update(); if(m_VtkRenderer!=NULL) { int w=vtkObject::GetGlobalWarningDisplay(); vtkObject::GlobalWarningDisplayOff(); m_VtkRenderer->ResetCamera(); vtkObject::SetGlobalWarningDisplay(w); } } void mitk::VtkPropRenderer::SetMapperID(const MapperSlotId mapperId) { if(m_MapperID != mapperId) Superclass::SetMapperID(mapperId); // Workaround for GL Displaylist Bug checkState(); } /*! \brief Activates the current renderwindow. */ void mitk::VtkPropRenderer::MakeCurrent() { if(m_RenderWindow!=NULL) m_RenderWindow->MakeCurrent(); } void mitk::VtkPropRenderer::PickWorldPoint(const mitk::Point2D& displayPoint, mitk::Point3D& worldPoint) const { if(m_VtkMapperPresent) { //m_WorldPointPicker->SetTolerance (0.0001); switch ( m_PickingMode ) { case (WorldPointPicking) : { m_WorldPointPicker->Pick(displayPoint[0], displayPoint[1], 0, m_VtkRenderer); vtk2itk(m_WorldPointPicker->GetPickPosition(), worldPoint); break; } case (PointPicking) : { // create a new vtkRenderer // give it all necessary information (camera position, etc.) // get all surfaces from datastorage, get actors from them // add all those actors to the new renderer // give this new renderer to pointpicker /* vtkRenderer* pickingRenderer = vtkRenderer::New(); pickingRenderer->SetActiveCamera( ); DataStorage* dataStorage = m_DataStorage; TNodePredicateDataType isSurface; DataStorage::SetOfObjects::ConstPointer allSurfaces = dataStorage->GetSubset( isSurface ); MITK_INFO << "in picking: got " << allSurfaces->size() << " surfaces." << std::endl; for (DataStorage::SetOfObjects::const_iterator iter = allSurfaces->begin(); iter != allSurfaces->end(); ++iter) { const DataNode* currentNode = *iter; VtkMapper3D* baseVtkMapper3D = dynamic_cast( currentNode->GetMapper( BaseRenderer::Standard3D ) ); if ( baseVtkMapper3D ) { vtkActor* actor = dynamic_cast( baseVtkMapper3D->GetViewProp() ); if (actor) { MITK_INFO << "a" << std::flush; pickingRenderer->AddActor( actor ); } } } MITK_INFO << ";" << std::endl; */ m_PointPicker->Pick(displayPoint[0], displayPoint[1], 0, m_VtkRenderer); vtk2itk(m_PointPicker->GetPickPosition(), worldPoint); break; } } } else { Superclass::PickWorldPoint(displayPoint, worldPoint); } } mitk::DataNode * mitk::VtkPropRenderer::PickObject( const Point2D &displayPosition, Point3D &worldPosition ) const { if ( m_VtkMapperPresent ) { m_CellPicker->InitializePickList(); // Iterate over all DataStorage objects to determine all vtkProps intended // for picking DataStorage::SetOfObjects::ConstPointer allObjects = m_DataStorage->GetAll(); for ( DataStorage::SetOfObjects::ConstIterator it = allObjects->Begin(); it != allObjects->End(); ++it ) { DataNode *node = it->Value(); if ( node == NULL ) continue; bool pickable = false; node->GetBoolProperty( "pickable", pickable ); if ( !pickable ) continue; VtkMapper *mapper = dynamic_cast < VtkMapper * > ( node->GetMapper( m_MapperID ) ); if ( mapper == NULL ) continue; vtkProp *prop = mapper->GetVtkProp( (mitk::BaseRenderer *)this ); if ( prop == NULL ) continue; m_CellPicker->AddPickList( prop ); } // Do the picking and retrieve the picked vtkProp (if any) m_CellPicker->PickFromListOn(); m_CellPicker->Pick( displayPosition[0], displayPosition[1], 0.0, m_VtkRenderer ); m_CellPicker->PickFromListOff(); vtk2itk( m_CellPicker->GetPickPosition(), worldPosition ); vtkProp *prop = m_CellPicker->GetViewProp(); if ( prop == NULL ) { return NULL; } // Iterate over all DataStorage objects to determine if the retrieved // vtkProp is owned by any associated mapper. for ( DataStorage::SetOfObjects::ConstIterator it = allObjects->Begin(); it != allObjects->End(); ++it) { DataNode::Pointer node = it->Value(); if ( node.IsNull() ) continue; mitk::Mapper * mapper = node->GetMapper( m_MapperID ); if ( mapper == NULL) continue; mitk::VtkMapper * vtkmapper = dynamic_cast< VtkMapper * >(mapper); if(vtkmapper){ //if vtk-based, then ... if ( vtkmapper->HasVtkProp( prop, const_cast< mitk::VtkPropRenderer * >( this ) ) ) { return node; } } } return NULL; } else { return Superclass::PickObject( displayPosition, worldPosition ); } }; /*! \brief Writes some 2D text as overlay. Function returns an unique int Text_ID for each call, which can be used via the GetTextLabelProperty(int text_id) function in order to get a vtkTextProperty. This property enables the setup of font, font size, etc. */ int mitk::VtkPropRenderer::WriteSimpleText(std::string text, double posX, double posY, double color1, double color2, double color3, float opacity) { if(text.size() > 0) { vtkTextActor* textActor = vtkTextActor::New(); textActor->SetPosition(posX,posY); textActor->SetInput(text.c_str()); textActor->GetTextProperty()->SetColor(color1, color2, color3); //TODO: Read color from node property textActor->GetTextProperty()->SetOpacity( opacity ); int text_id = m_TextCollection.size(); m_TextCollection.insert(TextMapType::value_type(text_id,textActor)); return text_id; } return -1; } /*! \brief Can be used in order to get a vtkTextProperty for a specific text_id. This property enables the setup of font, font size, etc. */ vtkTextProperty* mitk::VtkPropRenderer::GetTextLabelProperty(int text_id) { return this->m_TextCollection[text_id]->GetTextProperty(); } void mitk::VtkPropRenderer::InitPathTraversal() { if (m_DataStorage.IsNotNull()) { m_PickingObjects = m_DataStorage->GetAll(); m_PickingObjectsIterator = m_PickingObjects->begin(); } } vtkAssemblyPath* mitk::VtkPropRenderer::GetNextPath() { if (m_DataStorage.IsNull() ) { return NULL; } if ( m_PickingObjectsIterator == m_PickingObjects->end() ) { return NULL; } vtkAssemblyPath* returnPath = vtkAssemblyPath::New(); //returnPath->Register(NULL); bool success = false; while (!success) { // loop until AddNode can be called successfully const DataNode* node = *m_PickingObjectsIterator; if (node) { Mapper* mapper = node->GetMapper( BaseRenderer::Standard3D ); if (mapper) { VtkMapper* vtkmapper = dynamic_cast( mapper ); if (vtkmapper) { vtkProp* prop = vtkmapper->GetVtkProp(this); if ( prop && prop->GetVisibility() ) { // add to assembly path returnPath->AddNode( prop, prop->GetMatrix() ); success = true; } } } } ++m_PickingObjectsIterator; if ( m_PickingObjectsIterator == m_PickingObjects->end() ) break; } if ( success ) { return returnPath; } else { return NULL; } } void mitk::VtkPropRenderer::ReleaseGraphicsResources(vtkWindow *renWin) { if( m_DataStorage.IsNull() ) return; DataStorage::SetOfObjects::ConstPointer allObjects = m_DataStorage->GetAll(); for (DataStorage::SetOfObjects::const_iterator iter = allObjects->begin(); iter != allObjects->end(); ++iter) { DataNode::Pointer node = *iter; if ( node.IsNull() ) continue; Mapper * mapper = node->GetMapper(m_MapperID); if (mapper) { VtkMapper* vtkmapper = dynamic_cast( mapper ); if(vtkmapper) vtkmapper->ReleaseGraphicsResources(renWin); } } } const vtkWorldPointPicker *mitk::VtkPropRenderer::GetWorldPointPicker() const { return m_WorldPointPicker; } const vtkPointPicker *mitk::VtkPropRenderer::GetPointPicker() const { return m_PointPicker; } const vtkCellPicker *mitk::VtkPropRenderer::GetCellPicker() const { return m_CellPicker; } mitk::VtkPropRenderer::MappersMapType mitk::VtkPropRenderer::GetMappersMap() const { return m_MappersMap; } // Workaround for GL Displaylist bug static int glWorkAroundGlobalCount = 0; bool mitk::VtkPropRenderer::useImmediateModeRendering() { return glWorkAroundGlobalCount>1; } void mitk::VtkPropRenderer::checkState() { if (m_MapperID == Standard3D) { if (!didCount) { didCount = true; glWorkAroundGlobalCount++; if (glWorkAroundGlobalCount == 2) { MITK_INFO << "Multiple 3D Renderwindows active...: turning Immediate Rendering ON for legacy mappers"; // vtkMapper::GlobalImmediateModeRenderingOn(); } //MITK_INFO << "GLOBAL 3D INCREASE " << glWorkAroundGlobalCount << "\n"; } } else { if(didCount) { didCount=false; glWorkAroundGlobalCount--; if(glWorkAroundGlobalCount==1) { MITK_INFO << "Single 3D Renderwindow active...: turning Immediate Rendering OFF for legacy mappers"; // vtkMapper::GlobalImmediateModeRenderingOff(); } //MITK_INFO << "GLOBAL 3D DECREASE " << glWorkAroundGlobalCount << "\n"; } } } //### Contains all methods which are neceassry before each VTK Render() call void mitk::VtkPropRenderer::PrepareRender() { if ( this->GetMapperID() != m_CameraInitializedForMapperID ) { Initialize2DvtkCamera(); //Set parallel projection etc. } AdjustCameraToScene(); //Prepare camera for 2D render windows } bool mitk::VtkPropRenderer::Initialize2DvtkCamera() { if ( this->GetMapperID() == Standard3D ) { //activate parallel projection for 2D this->GetVtkRenderer()->GetActiveCamera()->SetParallelProjection(false); this->GetRenderWindow()->GetInteractor()->SetInteractorStyle( vtkInteractorStyleTrackballCamera::New() ); m_CameraInitializedForMapperID = Standard3D; } else if( this->GetMapperID() == Standard2D) { //activate parallel projection for 2D this->GetVtkRenderer()->GetActiveCamera()->SetParallelProjection(true); //turn the light out in the scene in order to render correct grey values. //TODO Implement a property for light in the 2D render windows (in another method) this->GetVtkRenderer()->RemoveAllLights(); this->GetRenderWindow()->GetInteractor()->SetInteractorStyle( mitkVtkInteractorStyle::New() ); m_CameraInitializedForMapperID = Standard2D; } return true; } void mitk::VtkPropRenderer::AdjustCameraToScene(){ if(this->GetMapperID() == Standard2D) { const mitk::DisplayGeometry* displayGeometry = this->GetDisplayGeometry(); double objectHeightInMM = this->GetCurrentWorldGeometry2D()->GetExtentInMM(1);//the height of the current object slice in mm double displayHeightInMM = displayGeometry->GetSizeInMM()[1]; //the display height in mm (gets smaller when you zoom in) double zoomFactor = objectHeightInMM/displayHeightInMM; //displayGeometry->GetScaleFactorMMPerDisplayUnit() //determine how much of the object can be displayed Vector2D displayGeometryOriginInMM = displayGeometry->GetOriginInMM(); //top left of the render window (Origin) Vector2D displayGeometryCenterInMM = displayGeometryOriginInMM + displayGeometry->GetSizeInMM()*0.5; //center of the render window: (Origin + Size/2) //Scale the rendered object: //The image is scaled by a single factor, because in an orthographic projection sizes //are preserved (so you cannot scale X and Y axis with different parameters). The //parameter sets the size of the total display-volume. If you set this to the image //height, the image plus a border with the size of the image will be rendered. //Therefore, the size is imageHeightInMM / 2. this->GetVtkRenderer()->GetActiveCamera()->SetParallelScale(objectHeightInMM*0.5 ); //zooming with the factor calculated by dividing displayHeight through imegeHeight. The factor is inverse, because the VTK zoom method is working inversely. this->GetVtkRenderer()->GetActiveCamera()->Zoom(zoomFactor); //the center of the view-plane double viewPlaneCenter[3]; viewPlaneCenter[0] = displayGeometryCenterInMM[0]; viewPlaneCenter[1] = displayGeometryCenterInMM[1]; viewPlaneCenter[2] = 0.0; //the view-plane is located in the XY-plane with Z=0.0 //define which direction is "up" for the ciamera (like default for vtk (0.0, 1.0, 0.0) double cameraUp[3]; cameraUp[0] = 0.0; cameraUp[1] = 1.0; cameraUp[2] = 0.0; //the position of the camera (center[0], center[1], 900000) double cameraPosition[3]; cameraPosition[0] = viewPlaneCenter[0]; cameraPosition[1] = viewPlaneCenter[1]; cameraPosition[2] = 900000.0; //Reason for 900000: VTK seems to calculate the clipping planes wrong for small values. See VTK bug (id #7823) in VTK bugtracker. //set the camera corresponding to the textured plane vtkSmartPointer camera = this->GetVtkRenderer()->GetActiveCamera(); if (camera) { camera->SetPosition( cameraPosition ); //set the camera position on the textured plane normal (in our case this is the view plane normal) camera->SetFocalPoint( viewPlaneCenter ); //set the focal point to the center of the textured plane camera->SetViewUp( cameraUp ); //set the view-up for the camera // double distance = sqrt((cameraPosition[2]-viewPlaneCenter[2])*(cameraPosition[2]-viewPlaneCenter[2])); // camera->SetClippingRange(distance-50, distance+50); //Reason for huge range: VTK seems to calculate the clipping planes wrong for small values. See VTK bug (id #7823) in VTK bugtracker. camera->SetClippingRange(0.1, 1000000); //Reason for huge range: VTK seems to calculate the clipping planes wrong for small values. See VTK bug (id #7823) in VTK bugtracker. } const PlaneGeometry *planeGeometry = dynamic_cast< const PlaneGeometry * >( this->GetCurrentWorldGeometry2D() ); if ( planeGeometry != NULL ) { //Transform the camera to the current position (transveral, coronal and saggital plane). //This is necessary, because the SetUserTransform() method does not manipulate the vtkCamera. //(Without not all three planes would be visible). vtkSmartPointer trans = vtkSmartPointer::New(); vtkSmartPointer matrix = vtkSmartPointer::New(); Point3D origin; Vector3D right, bottom, normal; origin = planeGeometry->GetOrigin(); right = planeGeometry->GetAxisVector( 0 ); // right = Extent of Image in mm (worldspace) bottom = planeGeometry->GetAxisVector( 1 ); normal = planeGeometry->GetNormal(); right.Normalize(); bottom.Normalize(); normal.Normalize(); matrix->SetElement(0, 0, right[0]); matrix->SetElement(1, 0, right[1]); matrix->SetElement(2, 0, right[2]); matrix->SetElement(0, 1, bottom[0]); matrix->SetElement(1, 1, bottom[1]); matrix->SetElement(2, 1, bottom[2]); matrix->SetElement(0, 2, normal[0]); matrix->SetElement(1, 2, normal[1]); matrix->SetElement(2, 2, normal[2]); matrix->SetElement(0, 3, origin[0]); matrix->SetElement(1, 3, origin[1]); matrix->SetElement(2, 3, origin[2]); matrix->SetElement(3, 0, 0.0); matrix->SetElement(3, 1, 0.0); matrix->SetElement(3, 2, 0.0); matrix->SetElement(3, 3, 1.0); trans->SetMatrix(matrix); //Transform the camera to the current position (transveral, coronal and saggital plane). this->GetVtkRenderer()->GetActiveCamera()->ApplyTransform(trans); } } } diff --git a/Core/Code/Testing/mitkDataStorageTest.cpp b/Core/Code/Testing/mitkDataStorageTest.cpp index c3b9e9a14f..88700caa0c 100644 --- a/Core/Code/Testing/mitkDataStorageTest.cpp +++ b/Core/Code/Testing/mitkDataStorageTest.cpp @@ -1,875 +1,875 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include #include #include "mitkImage.h" #include "mitkSurface.h" #include "mitkStringProperty.h" #include "mitkColorProperty.h" #include "mitkGroupTagProperty.h" #include "mitkDataNode.h" #include "mitkReferenceCountWatcher.h" #include "mitkDataStorage.h" #include "mitkStandaloneDataStorage.h" #include "mitkNodePredicateProperty.h" #include "mitkNodePredicateDataType.h" #include "mitkNodePredicateDimension.h" #include "mitkNodePredicateData.h" #include "mitkNodePredicateNot.h" #include "mitkNodePredicateAnd.h" #include "mitkNodePredicateOr.h" #include "mitkNodePredicateSource.h" #include "mitkMessage.h" //#include "mitkPicFileReader.h" #include "mitkTestingMacros.h" #include "mitkItkImageFileReader.h" void TestDataStorage(mitk::DataStorage* ds, std::string filename); namespace mitk { class TestStandaloneDataStorage: public StandaloneDataStorage { public: mitkClassMacro(TestStandaloneDataStorage, mitk::DataStorage); itkNewMacro(Self); std::map GetModifiedObserverTags() const {return m_NodeModifiedObserverTags;} std::map GetDeletedObserverTags() const { return m_NodeDeleteObserverTags; } protected: TestStandaloneDataStorage() {} }; } class DSEventReceiver // Helper class for event testing { public: const mitk::DataNode* m_NodeAdded; const mitk::DataNode* m_NodeRemoved; DSEventReceiver() : m_NodeAdded(NULL), m_NodeRemoved(NULL) { } void OnAdd(const mitk::DataNode* node) { m_NodeAdded = node; } void OnRemove(const mitk::DataNode* node) { m_NodeRemoved = node; } }; /// /// \brief a class for checking if the datastorage is really thread safe /// /// Therefore it listens to a node contained in the datastorage. when this node /// gets removed and deleted, this class gets informed by calling OnObjectDelete(). /// in OnObjectDelete() an empty node gets added. this must not cause a deadlock /// struct ItkDeleteEventListener { ItkDeleteEventListener( mitk::DataStorage* ds ) : m_Node(0), m_DataStorage(ds), m_DeleteObserverTag(0) { } void SetNode( mitk::DataNode* _Node ) { if(m_Node) return; m_Node = _Node; itk::MemberCommand::Pointer onObjectDelete = itk::MemberCommand::New(); onObjectDelete->SetCallbackFunction(this, &ItkDeleteEventListener::OnObjectDelete); m_DeleteObserverTag = m_Node->AddObserver(itk::DeleteEvent(), onObjectDelete); } void OnObjectDelete( const itk::Object* /*caller*/, const itk::EventObject & ) { mitk::DataNode::Pointer node = mitk::DataNode::New(); m_DataStorage->Add( node ); // SHOULD NOT CAUSE A DEADLOCK! m_DataStorage->Remove( node ); // tidy up: remove the empty node again m_Node = 0; } protected: mitk::DataNode* m_Node; mitk::DataStorage::Pointer m_DataStorage; unsigned int m_DeleteObserverTag; }; //## Documentation //## main testing method //## NOTE: the current Singleton implementation of DataTreeStorage will lead to crashes if a testcase fails //## and therefore mitk::DataStorage::ShutdownSingleton() is not called. int mitkDataStorageTest(int argc, char* argv[]) { MITK_TEST_BEGIN("DataStorageTest"); // muellerm: test observer tag remove mitk::TestStandaloneDataStorage::Pointer testDS = mitk::TestStandaloneDataStorage::New(); mitk::DataNode::Pointer n1 = mitk::DataNode::New(); testDS->Add(n1); MITK_TEST_CONDITION_REQUIRED( testDS->GetModifiedObserverTags().size()==1, "Testing if modified" " observer was added."); MITK_TEST_CONDITION_REQUIRED( testDS->GetDeletedObserverTags().size()==1, "Testing if delete" " observer was added."); testDS->Remove(n1); MITK_TEST_CONDITION_REQUIRED( testDS->GetModifiedObserverTags().size()==0, "Testing if modified" " observer was removed."); MITK_TEST_CONDITION_REQUIRED( testDS->GetDeletedObserverTags().size()==0, "Testing if delete" " observer was removed."); /* Create StandaloneDataStorage */ MITK_TEST_OUTPUT( << "Create StandaloneDataStorage : "); mitk::StandaloneDataStorage::Pointer sds; try { sds = mitk::StandaloneDataStorage::New(); MITK_TEST_CONDITION_REQUIRED(sds.IsNotNull(), "Testing Instatiation"); } catch (...) { MITK_TEST_FAILED_MSG( << "Exception during creation of StandaloneDataStorage"); } MITK_TEST_OUTPUT( << "Testing StandaloneDataStorage: "); MITK_TEST_CONDITION_REQUIRED(argc>1, "Testing correct test invocation"); TestDataStorage(sds,argv[1]); // TODO: Add specific StandaloneDataStorage Tests here sds = NULL; MITK_TEST_END(); } //##Documentation //## @brief Test for the DataStorage class and its associated classes (e.g. the predicate classes) //## This method will be called once for each subclass of DataStorage void TestDataStorage( mitk::DataStorage* ds, std::string filename ) { /* DataStorage valid? */ MITK_TEST_CONDITION_REQUIRED(ds != NULL, "DataStorage valid?"); // Take the ItkImageFile Reader for the .nrrd data format. // (was previously pic which is now deprecated format) mitk::ItkImageFileReader::Pointer reader = mitk::ItkImageFileReader::New(); reader -> SetFileName(filename.c_str()); reader -> Update(); mitk::Image::Pointer image = reader->GetOutput(); // create some DataNodes to fill the ds mitk::DataNode::Pointer n1 = mitk::DataNode::New(); // node with image and name property // mitk::Image::Pointer image = mitk::Image::New(); // unsigned int imageDimensions[] = { 10, 10, 10, 10 }; // mitk::PixelType pt(typeid(int)); // image->Initialize( pt, 4, imageDimensions ); n1->SetData(image); n1->SetProperty("name", mitk::StringProperty::New("Node 1 - Image Node")); mitk::DataStorage::SetOfObjects::Pointer parents1 = mitk::DataStorage::SetOfObjects::New(); mitk::DataNode::Pointer n2 = mitk::DataNode::New(); // node with surface and name and color properties mitk::Surface::Pointer surface = mitk::Surface::New(); n2->SetData(surface); n2->SetProperty("name", mitk::StringProperty::New("Node 2 - Surface Node")); mitk::Color color; color.Set(1.0f, 1.0f, 0.0f); n2->SetColor(color); n2->SetProperty("Resection Proposal 1", mitk::GroupTagProperty::New()); mitk::DataStorage::SetOfObjects::Pointer parents2 = mitk::DataStorage::SetOfObjects::New(); parents2->InsertElement(0, n1); // n1 (image node) is source of n2 (surface node) mitk::DataNode::Pointer n3 = mitk::DataNode::New(); // node without data but with name property n3->SetProperty("name", mitk::StringProperty::New("Node 3 - Empty Node")); n3->SetProperty("Resection Proposal 1", mitk::GroupTagProperty::New()); n3->SetProperty("Resection Proposal 2", mitk::GroupTagProperty::New()); mitk::DataStorage::SetOfObjects::Pointer parents3 = mitk::DataStorage::SetOfObjects::New(); parents3->InsertElement(0, n2); // n2 is source of n3 mitk::DataNode::Pointer n4 = mitk::DataNode::New(); // node without data but with color property n4->SetColor(color); n4->SetProperty("Resection Proposal 2", mitk::GroupTagProperty::New()); mitk::DataStorage::SetOfObjects::Pointer parents4 = mitk::DataStorage::SetOfObjects::New(); parents4->InsertElement(0, n2); parents4->InsertElement(1, n3); // n2 and n3 are sources of n4 mitk::DataNode::Pointer n5 = mitk::DataNode::New(); // extra node n5->SetProperty("name", mitk::StringProperty::New("Node 5")); try /* adding objects */ { /* Add an object */ ds->Add(n1, parents1); MITK_TEST_CONDITION_REQUIRED((ds->GetAll()->Size() == 1) && (ds->GetAll()->GetElement(0) == n1), "Testing Adding a new object"); /* Check exception on adding the same object again */ MITK_TEST_OUTPUT( << "Check exception on adding the same object again: "); MITK_TEST_FOR_EXCEPTION(..., ds->Add(n1, parents1)); MITK_TEST_CONDITION(ds->GetAll()->Size() == 1, "Test if object count is correct after exception"); /* Add an object that has a source object */ ds->Add(n2, parents2); MITK_TEST_CONDITION_REQUIRED(ds->GetAll()->Size() == 2, "Testing Adding an object that has a source object"); /* Add some more objects needed for further tests */ ds->Add(n3, parents3); // n3 object that has name property and one parent ds->Add(n4, parents4); // n4 object that has color property ds->Add(n5); // n5 has no parents MITK_TEST_CONDITION_REQUIRED(ds->GetAll()->Size() == 5, "Adding some more objects needed for further tests"); } catch(...) { MITK_TEST_FAILED_MSG( << "Exeption during object creation"); } try /* object retrieval methods */ { /* Requesting all Objects */ { const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetAll(); std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (stlAll.size() == 5) // check if all tree nodes are in resultset && (std::find(stlAll.begin(), stlAll.end(), n1) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n2) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n3) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n4) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n5) != stlAll.end()), "Testing GetAll()" ); } /* Requesting a named object */ { mitk::NodePredicateProperty::Pointer predicate(mitk::NodePredicateProperty::New("name", mitk::StringProperty::New("Node 2 - Surface Node"))); mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSubset(predicate); MITK_TEST_CONDITION((all->Size() == 1) && (all->GetElement(0) == n2), "Requesting a named object"); } /* Requesting objects of specific data type */ { mitk::NodePredicateDataType::Pointer predicate(mitk::NodePredicateDataType::New("Image")); mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSubset(predicate); MITK_TEST_CONDITION((all->Size() == 1) && (all->GetElement(0) == n1), "Requesting objects of specific data type") } /* Requesting objects of specific dimension */ { mitk::NodePredicateDimension::Pointer predicate(mitk::NodePredicateDimension::New( 4 )); mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSubset(predicate); MITK_TEST_CONDITION((all->Size() == 1) && (all->GetElement(0) == n1), "Requesting objects of specific dimension") } /* Requesting objects with specific data object */ { mitk::NodePredicateData::Pointer predicate(mitk::NodePredicateData::New(image)); mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSubset(predicate); MITK_TEST_CONDITION((all->Size() == 1) && (all->GetElement(0) == n1), "Requesting objects with specific data object") } /* Requesting objects with NULL data */ { mitk::NodePredicateData::Pointer predicate(mitk::NodePredicateData::New(NULL)); mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSubset(predicate); MITK_TEST_CONDITION( (all->Size() == 3) && (std::find(all->begin(), all->end(), n3) != all->end()) && (std::find(all->begin(), all->end(), n4) != all->end()) && (std::find(all->begin(), all->end(), n5) != all->end()) , "Requesting objects with NULL data"); } /* Requesting objects that meet a conjunction criteria */ { mitk::NodePredicateDataType::Pointer p1 = mitk::NodePredicateDataType::New("Surface"); mitk::NodePredicateProperty::Pointer p2 = mitk::NodePredicateProperty::New("color", mitk::ColorProperty::New(color)); mitk::NodePredicateAnd::Pointer predicate = mitk::NodePredicateAnd::New(); predicate->AddPredicate(p1); predicate->AddPredicate(p2); // objects must be of datatype "Surface" and have red color (= n2) const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSubset(predicate); MITK_TEST_CONDITION((all->Size() == 1) && (all->GetElement(0) == n2), "Requesting objects that meet a conjunction criteria"); } /* Requesting objects that meet a disjunction criteria */ { mitk::NodePredicateDataType::Pointer p1(mitk::NodePredicateDataType::New("Image")); mitk::NodePredicateProperty::Pointer p2(mitk::NodePredicateProperty::New("color", mitk::ColorProperty::New(color))); mitk::NodePredicateOr::Pointer predicate = mitk::NodePredicateOr::New(); predicate->AddPredicate(p1); predicate->AddPredicate(p2); // objects must be of datatype "Surface" or have red color (= n1, n2, n4) const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSubset(predicate); MITK_TEST_CONDITION( (all->Size() == 3) && (std::find(all->begin(), all->end(), n1) != all->end()) && (std::find(all->begin(), all->end(), n2) != all->end()) && (std::find(all->begin(), all->end(), n4) != all->end()), "Requesting objects that meet a disjunction criteria"); } /* Requesting objects that do not meet a criteria */ { mitk::ColorProperty::Pointer cp = mitk::ColorProperty::New(color); mitk::NodePredicateProperty::Pointer proppred(mitk::NodePredicateProperty::New("color", cp)); mitk::NodePredicateNot::Pointer predicate(mitk::NodePredicateNot::New(proppred)); const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSubset(predicate); std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 3) // check if correct objects are in resultset && (std::find(stlAll.begin(), stlAll.end(), n1) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n3) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n5) != stlAll.end()), "Requesting objects that do not meet a criteria"); } /* Requesting *direct* source objects */ { const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSources(n3, NULL, true); // Get direct parents of n3 (=n2) std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 1) && (std::find(stlAll.begin(), stlAll.end(), n2) != stlAll.end()), "Requesting *direct* source objects"); } /* Requesting *all* source objects */ { const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSources(n3, NULL, false); // Get all parents of n3 (= n1 + n2) std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 2) && (std::find(stlAll.begin(), stlAll.end(), n1) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n2) != stlAll.end()), "Requesting *all* source objects"); // check if n1 and n2 are the resultset } /* Requesting *all* sources of object with multiple parents */ { const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSources(n4, NULL, false); // Get all parents of n4 (= n1 + n2 + n3) std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 3) && (std::find(stlAll.begin(), stlAll.end(), n1) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n2) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n3) != stlAll.end()) // check if n1 and n2 and n3 are the resultset , "Requesting *all* sources of object with multiple parents"); } /* Requesting *direct* derived objects */ { const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetDerivations(n1, NULL, true); // Get direct childs of n1 (=n2) std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 1) && (std::find(stlAll.begin(), stlAll.end(), n2) != stlAll.end())// check if n1 is the resultset , "Requesting *direct* derived objects"); } ///* Requesting *direct* derived objects with multiple parents/derivations */ { const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetDerivations(n2, NULL, true); // Get direct childs of n2 (=n3 + n4) std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 2) && (std::find(stlAll.begin(), stlAll.end(), n3) != stlAll.end()) // check if n3 is the resultset && (std::find(stlAll.begin(), stlAll.end(), n4) != stlAll.end()) // check if n4 is the resultset , "Requesting *direct* derived objects with multiple parents/derivations"); } //* Requesting *all* derived objects */ { const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetDerivations(n1, NULL, false); // Get all childs of n1 (=n2, n3, n4) std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 3) && (std::find(stlAll.begin(), stlAll.end(), n2) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n3) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n4) != stlAll.end()) , "Requesting *all* derived objects"); } /* Checking for circular source relationships */ { parents1->InsertElement(0, n4); // make n1 derived from n4 (which is derived from n2, which is derived from n1) const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSources(n4, NULL, false); // Get all parents of n4 (= n1 + n2 + n3, not n4 itself and not multiple versions of the nodes!) std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 3) && (std::find(stlAll.begin(), stlAll.end(), n1) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n2) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n3) != stlAll.end()) // check if n1 and n2 and n3 are the resultset , "Checking for circular source relationships"); } ///* Checking for circular derivation relationships can not be performed, because the internal derivations datastructure // can not be accessed from the outside. (Therefore it should not be possible to create these circular relations */ //* Checking GroupTagProperty */ { mitk::GroupTagProperty::Pointer tp = mitk::GroupTagProperty::New(); mitk::NodePredicateProperty::Pointer pred(mitk::NodePredicateProperty::New("Resection Proposal 1", tp)); const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSubset(pred); std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 2) // check if n2 and n3 are in resultset && (std::find(stlAll.begin(), stlAll.end(), n2) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n3) != stlAll.end()) , "Checking GroupTagProperty"); } /* Checking GroupTagProperty 2 */ { mitk::GroupTagProperty::Pointer tp = mitk::GroupTagProperty::New(); mitk::NodePredicateProperty::Pointer pred(mitk::NodePredicateProperty::New("Resection Proposal 2", tp)); const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSubset(pred); std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 2) // check if n3 and n4 are in resultset && (std::find(stlAll.begin(), stlAll.end(), n3) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n4) != stlAll.end()) , "Checking GroupTagProperty 2"); } /* Checking direct sources with condition */ { mitk::NodePredicateDataType::Pointer pred = mitk::NodePredicateDataType::New("Surface"); const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSources(n4, pred, true); std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 1) // check if n2 is in resultset && (std::find(stlAll.begin(), stlAll.end(), n2) != stlAll.end()) , "checking direct sources with condition"); } /* Checking all sources with condition */ { mitk::NodePredicateDataType::Pointer pred = mitk::NodePredicateDataType::New("Image"); const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSources(n4, pred, false); std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 1) // check if n1 is in resultset && (std::find(stlAll.begin(), stlAll.end(), n1) != stlAll.end()) , "Checking all sources with condition"); } /* Checking all sources with condition with empty resultset */ { mitk::NodePredicateDataType::Pointer pred = mitk::NodePredicateDataType::New("VesselTree"); const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetSources(n4, pred, false); MITK_TEST_CONDITION(all->Size() == 0 , "Checking all sources with condition with empty resultset"); // check if resultset is empty } /* Checking direct derivations with condition */ { mitk::NodePredicateProperty::Pointer pred = mitk::NodePredicateProperty::New("color"); const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetDerivations(n1, pred, true); std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 1) // check if n2 is in resultset && (std::find(stlAll.begin(), stlAll.end(), n2) != stlAll.end()) , "Checking direct derivations with condition"); } /* Checking all derivations with condition */ { mitk::NodePredicateProperty::Pointer pred = mitk::NodePredicateProperty::New("color"); const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetDerivations(n1, pred, false); std::vector stlAll = all->CastToSTLConstContainer(); MITK_TEST_CONDITION( (all->Size() == 2) // check if n2 and n4 are in resultset && (std::find(stlAll.begin(), stlAll.end(), n2) != stlAll.end()) && (std::find(stlAll.begin(), stlAll.end(), n4) != stlAll.end()) , "Checking direct derivations with condition"); } /* Checking named node method */ MITK_TEST_CONDITION(ds->GetNamedNode("Node 2 - Surface Node") == n2, "Checking named node method"); MITK_TEST_CONDITION(ds->GetNamedNode(std::string("Node 2 - Surface Node")) == n2, "Checking named node(std::string) method"); /* Checking named node method with wrong name */ MITK_TEST_CONDITION(ds->GetNamedNode("This name does not exist") == NULL, "Checking named node method with wrong name"); /* Checking named object method */ MITK_TEST_CONDITION(ds->GetNamedObject("Node 1 - Image Node") == image, "Checking named object method"); MITK_TEST_CONDITION(ds->GetNamedObject(std::string("Node 1 - Image Node")) == image, "Checking named object(std::string) method"); /* Checking named object method with wrong DataType */ MITK_TEST_CONDITION(ds->GetNamedObject("Node 1 - Image Node") == NULL, "Checking named object method with wrong DataType"); /* Checking named object method with wrong name */ MITK_TEST_CONDITION(ds->GetNamedObject("This name does not exist") == NULL, "Checking named object method with wrong name"); /* Checking GetNamedDerivedNode with valid name and direct derivation only */ MITK_TEST_CONDITION(ds->GetNamedDerivedNode("Node 2 - Surface Node", n1, true) == n2, "Checking GetNamedDerivedNode with valid name & direct derivation only"); /* Checking GetNamedDerivedNode with invalid Name and direct derivation only */ MITK_TEST_CONDITION(ds->GetNamedDerivedNode("wrong name", n1, true) == NULL, "Checking GetNamedDerivedNode with invalid name & direct derivation only"); /* Checking GetNamedDerivedNode with invalid Name and direct derivation only */ MITK_TEST_CONDITION(ds->GetNamedDerivedNode("Node 3 - Empty Node", n1, false) == n3, "Checking GetNamedDerivedNode with invalid name & direct derivation only"); /* Checking GetNamedDerivedNode with valid Name but direct derivation only */ MITK_TEST_CONDITION(ds->GetNamedDerivedNode("Node 3 - Empty Node", n1, true) == NULL, "Checking GetNamedDerivedNode with valid Name but direct derivation only"); /* Checking GetNode with valid predicate */ { mitk::NodePredicateDataType::Pointer p(mitk::NodePredicateDataType::New("Image")); MITK_TEST_CONDITION(ds->GetNode(p) == n1, "Checking GetNode with valid predicate"); } /* Checking GetNode with invalid predicate */ { mitk::NodePredicateDataType::Pointer p(mitk::NodePredicateDataType::New("PointSet")); MITK_TEST_CONDITION(ds->GetNode(p) == NULL, "Checking GetNode with invalid predicate"); } } // object retrieval methods catch(...) { MITK_TEST_FAILED_MSG( << "Exeption during object retrieval (GetXXX() Methods)"); } try /* object removal methods */ { /* Checking removal of a node without relations */ { mitk::DataNode::Pointer extra = mitk::DataNode::New(); extra->SetProperty("name", mitk::StringProperty::New("extra")); mitk::ReferenceCountWatcher::Pointer watcher = new mitk::ReferenceCountWatcher(extra); int refCountbeforeDS = watcher->GetReferenceCount(); ds->Add(extra); MITK_TEST_CONDITION(ds->GetNamedNode("extra") == extra, "Adding extra node"); ds->Remove(extra); MITK_TEST_CONDITION( (ds->GetNamedNode("extra") == NULL) && (refCountbeforeDS == watcher->GetReferenceCount()) , "Checking removal of a node without relations"); extra = NULL; } /* Checking removal of a node with a parent */ { mitk::DataNode::Pointer extra = mitk::DataNode::New(); extra->SetProperty("name", mitk::StringProperty::New("extra")); mitk::ReferenceCountWatcher::Pointer watcher = new mitk::ReferenceCountWatcher(extra); int refCountbeforeDS = watcher->GetReferenceCount(); ds->Add(extra, n1); // n1 is parent of extra MITK_TEST_CONDITION( (ds->GetNamedNode("extra") == extra) && (ds->GetDerivations(n1)->Size() == 2) // n2 and extra should be derived from n1 , "Adding extra node"); ds->Remove(extra); MITK_TEST_CONDITION( (ds->GetNamedNode("extra") == NULL) && (refCountbeforeDS == watcher->GetReferenceCount()) && (ds->GetDerivations(n1)->Size() == 1) , "Checking removal of a node with a parent"); extra = NULL; } /* Checking removal of a node with two parents */ { mitk::DataNode::Pointer extra = mitk::DataNode::New(); extra->SetProperty("name", mitk::StringProperty::New("extra")); mitk::ReferenceCountWatcher::Pointer watcher = new mitk::ReferenceCountWatcher(extra); int refCountbeforeDS = watcher->GetReferenceCount(); mitk::DataStorage::SetOfObjects::Pointer p = mitk::DataStorage::SetOfObjects::New(); p->push_back(n1); p->push_back(n2); ds->Add(extra, p); // n1 and n2 are parents of extra MITK_TEST_CONDITION( (ds->GetNamedNode("extra") == extra) && (ds->GetDerivations(n1)->Size() == 2) // n2 and extra should be derived from n1 && (ds->GetDerivations(n2)->Size() == 3) , "add extra node"); ds->Remove(extra); MITK_TEST_CONDITION( (ds->GetNamedNode("extra") == NULL) && (refCountbeforeDS == watcher->GetReferenceCount()) && (ds->GetDerivations(n1)->Size() == 1) // after remove, only n2 should be derived from n1 && (ds->GetDerivations(n2)->Size() == 2) // after remove, only n3 and n4 should be derived from n2 , "Checking removal of a node with two parents"); extra = NULL; } /* Checking removal of a node with two derived nodes */ { mitk::DataNode::Pointer extra = mitk::DataNode::New(); extra->SetProperty("name", mitk::StringProperty::New("extra")); mitk::ReferenceCountWatcher::Pointer watcher = new mitk::ReferenceCountWatcher(extra); int refCountbeforeDS = watcher->GetReferenceCount(); ds->Add(extra); mitk::DataNode::Pointer d1 = mitk::DataNode::New(); d1->SetProperty("name", mitk::StringProperty::New("d1")); ds->Add(d1, extra); mitk::DataNode::Pointer d2 = mitk::DataNode::New(); d2->SetProperty("name", mitk::StringProperty::New("d2")); ds->Add(d2, extra); MITK_TEST_CONDITION( (ds->GetNamedNode("extra") == extra) && (ds->GetNamedNode("d1") == d1) && (ds->GetNamedNode("d2") == d2) && (ds->GetSources(d1)->Size() == 1) // extra should be source of d1 && (ds->GetSources(d2)->Size() == 1) // extra should be source of d2 && (ds->GetDerivations(extra)->Size() == 2) // d1 and d2 should be derived from extra , "add extra node"); ds->Remove(extra); MITK_TEST_CONDITION( (ds->GetNamedNode("extra") == NULL) && (ds->GetNamedNode("d1") == d1) && (ds->GetNamedNode("d2") == d2) && (refCountbeforeDS == watcher->GetReferenceCount()) && (ds->GetSources(d1)->Size() == 0) // after remove, d1 should not have a source anymore && (ds->GetSources(d2)->Size() == 0) // after remove, d2 should not have a source anymore , "Checking removal of a node with two derived nodes"); extra = NULL; } /* Checking removal of a node with two parents and two derived nodes */ { mitk::DataNode::Pointer extra = mitk::DataNode::New(); extra->SetProperty("name", mitk::StringProperty::New("extra")); mitk::ReferenceCountWatcher::Pointer watcher = new mitk::ReferenceCountWatcher(extra); mitk::ReferenceCountWatcher::Pointer n1watcher = new mitk::ReferenceCountWatcher(n1); int refCountbeforeDS = watcher->GetReferenceCount(); mitk::DataStorage::SetOfObjects::Pointer p = mitk::DataStorage::SetOfObjects::New(); p->push_back(n1); p->push_back(n2); ds->Add(extra, p); // n1 and n2 are parents of extra mitk::DataNode::Pointer d1 = mitk::DataNode::New(); d1->SetProperty("name", mitk::StringProperty::New("d1x")); ds->Add(d1, extra); mitk::DataNode::Pointer d2 = mitk::DataNode::New(); d2->SetProperty("name", mitk::StringProperty::New("d2x")); ds->Add(d2, extra); MITK_TEST_CONDITION( (ds->GetNamedNode("extra") == extra) && (ds->GetNamedNode("d1x") == d1) && (ds->GetNamedNode("d2x") == d2) && (ds->GetSources(d1)->Size() == 1) // extra should be source of d1 && (ds->GetSources(d2)->Size() == 1) // extra should be source of d2 && (ds->GetDerivations(n1)->Size() == 2) // n2 and extra should be derived from n1 && (ds->GetDerivations(n2)->Size() == 3) // n3, n4 and extra should be derived from n2 && (ds->GetDerivations(extra)->Size() == 2) // d1 and d2 should be derived from extra , "add extra node"); ds->Remove(extra); MITK_TEST_CONDITION( (ds->GetNamedNode("extra") == NULL) && (ds->GetNamedNode("d1x") == d1) && (ds->GetNamedNode("d2x") == d2) && (refCountbeforeDS == watcher->GetReferenceCount()) && (ds->GetDerivations(n1)->Size() == 1) // after remove, only n2 should be derived from n1 && (ds->GetDerivations(n2)->Size() == 2) // after remove, only n3 and n4 should be derived from n2 && (ds->GetSources(d1)->Size() == 0) // after remove, d1 should not have a source anymore && (ds->GetSources(d2)->Size() == 0) // after remove, d2 should not have a source anymore , "Checking removal of a node with two parents and two derived nodes"); extra = NULL; } } catch(...) { MITK_TEST_FAILED_MSG( << "Exeption during object removal methods"); } /* Checking for node is it's own parent exception */ { MITK_TEST_FOR_EXCEPTION_BEGIN(...); mitk::DataNode::Pointer extra = mitk::DataNode::New(); extra->SetProperty("name", mitk::StringProperty::New("extra")); mitk::DataStorage::SetOfObjects::Pointer p = mitk::DataStorage::SetOfObjects::New(); p->push_back(n1); p->push_back(extra); // extra is parent of extra!!! ds->Add(extra, p); MITK_TEST_FOR_EXCEPTION_END(...); } /* Checking reference count of node after add and remove */ { mitk::DataNode::Pointer extra = mitk::DataNode::New(); mitk::ReferenceCountWatcher::Pointer watcher = new mitk::ReferenceCountWatcher(extra); extra->SetProperty("name", mitk::StringProperty::New("extra")); mitk::DataStorage::SetOfObjects::Pointer p = mitk::DataStorage::SetOfObjects::New(); p->push_back(n1); p->push_back(n3); ds->Add(extra, p); extra = NULL; ds->Remove(ds->GetNamedNode("extra")); MITK_TEST_CONDITION(watcher->GetReferenceCount() == 0, "Checking reference count of node after add and remove"); } /* Checking removal of a node with two derived nodes [ dataStorage->GetDerivations( rootNode )] see bug #3426 */ { mitk::DataNode::Pointer extra = mitk::DataNode::New(); extra->SetProperty("name", mitk::StringProperty::New("extra")); ds->Add(extra); mitk::DataNode::Pointer d1y = mitk::DataNode::New(); d1y->SetProperty("name", mitk::StringProperty::New("d1y")); mitk::ReferenceCountWatcher::Pointer watcherD1y = new mitk::ReferenceCountWatcher(d1y); int refCountbeforeDS = watcherD1y->GetReferenceCount(); ds->Add(d1y, extra); mitk::DataNode::Pointer d2y = mitk::DataNode::New(); d2y->SetProperty("name", mitk::StringProperty::New("d2y")); ds->Add(d2y, extra); MITK_TEST_CONDITION( (ds->GetNamedNode("extra") == extra) && (ds->GetNamedNode("d1y") == d1y) && (ds->GetNamedNode("d2y") == d2y) && (ds->GetSources(d1y)->Size() == 1) // extra should be source of d1y && (ds->GetSources(d2y)->Size() == 1) // extra should be source of d2y && (ds->GetDerivations(extra)->Size() == 2) // d1y and d2y should be derived from extra , "add extra node"); ds->Remove(ds->GetDerivations( extra)); MITK_TEST_CONDITION( (ds->GetNamedNode("extra") == extra) && (ds->GetNamedNode("d1y") == NULL) // d1y should be NULL now && (ds->GetNamedNode("d2y") == NULL) // d2y should be NULL now && (refCountbeforeDS == watcherD1y->GetReferenceCount()) , "Checking removal of subset of two derived nodes from one parent node"); ds->Remove(extra); MITK_TEST_CONDITION( (ds->GetNamedNode("extra") == NULL) , "Checking removal of a parent node"); extra = NULL; } /* Checking GetGrouptags() */ { const std::set groupTags = ds->GetGroupTags(); MITK_TEST_CONDITION( (groupTags.size() == 2) && (std::find(groupTags.begin(), groupTags.end(), "Resection Proposal 1") != groupTags.end()) && (std::find(groupTags.begin(), groupTags.end(), "Resection Proposal 2") != groupTags.end()) , "Checking GetGrouptags()"); } /* Checking Event handling */ DSEventReceiver listener; try { ds->AddNodeEvent += mitk::MessageDelegate1(&listener, &DSEventReceiver::OnAdd); ds->RemoveNodeEvent += mitk::MessageDelegate1(&listener, &DSEventReceiver::OnRemove); mitk::DataNode::Pointer extra = mitk::DataNode::New(); mitk::ReferenceCountWatcher::Pointer watcher = new mitk::ReferenceCountWatcher(extra); ds->Add(extra); MITK_TEST_CONDITION(listener.m_NodeAdded == extra.GetPointer(), "Checking AddEvent"); ds->Remove(extra); MITK_TEST_CONDITION(listener.m_NodeRemoved == extra.GetPointer(), "Checking RemoveEvent"); /* RemoveListener */ ds->AddNodeEvent -= mitk::MessageDelegate1(&listener, &DSEventReceiver::OnAdd); ds->RemoveNodeEvent -= mitk::MessageDelegate1(&listener, &DSEventReceiver::OnRemove); listener.m_NodeAdded = NULL; listener.m_NodeRemoved = NULL; ds->Add(extra); ds->Remove(extra); MITK_TEST_CONDITION((listener.m_NodeRemoved == NULL) && (listener.m_NodeAdded == NULL), "Checking RemoveListener"); std::cout << "Pointer handling after event handling: " << std::flush; extra = NULL; // delete reference to the node. its memory should be freed now MITK_TEST_CONDITION(watcher->GetReferenceCount() == 0, "Pointer handling after event handling"); } catch(...) { /* cleanup */ ds->AddNodeEvent -= mitk::MessageDelegate1(&listener, &DSEventReceiver::OnAdd); ds->RemoveNodeEvent -= mitk::MessageDelegate1(&listener, &DSEventReceiver::OnRemove); MITK_TEST_FAILED_MSG( << "Exception during object removal methods"); } //Checking ComputeBoundingGeometry3D method*/ const mitk::DataStorage::SetOfObjects::ConstPointer all = ds->GetAll(); - mitk::TimeSlicedGeometry::Pointer geometry = ds->ComputeBoundingGeometry3D(); - MITK_TEST_CONDITION(geometry->GetTimeSteps()==4, "Test for number or time steps with ComputeBoundingGeometry()"); + mitk::TimeGeometry::Pointer geometry = ds->ComputeBoundingGeometry3D(); + MITK_TEST_CONDITION(geometry->GetNumberOfTimeSteps()==4, "Test for number or time steps with ComputeBoundingGeometry()"); mitk::TimeBounds timebounds = geometry->GetTimeBounds(); MITK_TEST_CONDITION((timebounds[0]==0)&&(timebounds[1]==4),"Test for timebounds with ComputeBoundingGeometry()"); - for (unsigned int i=0; iGetTimeSteps(); i++) + for (unsigned int i=0; iGetNumberOfTimeSteps(); i++) { - mitk::Geometry3D::Pointer subGeometry = geometry->GetGeometry3D(i); + mitk::Geometry3D::Pointer subGeometry = geometry->GetGeometryForTimeStep(i); mitk::TimeBounds bounds = subGeometry->GetTimeBounds(); MITK_TEST_CONDITION((bounds[0]==i)&&(bounds[1]==i+1),"Test for timebounds of geometry at different time steps with ComputeBoundingGeometry()"); } geometry = ds->ComputeBoundingGeometry3D(all); - MITK_TEST_CONDITION(geometry->GetTimeSteps()==4, "Test for number or time steps with ComputeBoundingGeometry(allNodes)"); + MITK_TEST_CONDITION(geometry->GetNumberOfTimeSteps()==4, "Test for number or time steps with ComputeBoundingGeometry(allNodes)"); timebounds = geometry->GetTimeBounds(); MITK_TEST_CONDITION((timebounds[0]==0)&&(timebounds[1]==4),"Test for timebounds with ComputeBoundingGeometry(allNodes)"); - for (unsigned int i=0; iGetTimeSteps(); i++) + for (unsigned int i=0; iGetNumberOfTimeSteps(); i++) { - mitk::Geometry3D::Pointer subGeometry = geometry->GetGeometry3D(i); + mitk::Geometry3D::Pointer subGeometry = geometry->GetGeometryForTimeStep(i); mitk::TimeBounds bounds = subGeometry->GetTimeBounds(); MITK_TEST_CONDITION((bounds[0]==i)&&(bounds[1]==i+1),"Test for timebounds of geometry at different time steps with ComputeBoundingGeometry()"); } // test for thread safety of DataStorage try { mitk::StandaloneDataStorage::Pointer standaloneDataStorage = mitk::StandaloneDataStorage::New(); ItkDeleteEventListener listener( standaloneDataStorage ); { mitk::DataNode::Pointer emptyNode = mitk::DataNode::New(); mitk::DataNode* pEmptyNode = emptyNode; listener.SetNode( emptyNode ); standaloneDataStorage->Add( emptyNode ); emptyNode = 0; // emptyNode is still alive because standaloneDataStorage // owns it standaloneDataStorage->Remove( pEmptyNode ); // this should not freeze the whole thing } } catch(...) { MITK_TEST_FAILED_MSG( << "Exception during testing DataStorage thread safe"); } /* Clear DataStorage */ ds->Remove(ds->GetAll()); MITK_TEST_CONDITION(ds->GetAll()->Size() == 0, "Checking Clear DataStorage"); } diff --git a/Core/Code/Testing/mitkSliceNavigationControllerTest.cpp b/Core/Code/Testing/mitkSliceNavigationControllerTest.cpp index cda5f45f9b..3a335f7293 100644 --- a/Core/Code/Testing/mitkSliceNavigationControllerTest.cpp +++ b/Core/Code/Testing/mitkSliceNavigationControllerTest.cpp @@ -1,577 +1,578 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkSliceNavigationController.h" #include "mitkPlaneGeometry.h" #include "mitkSlicedGeometry3D.h" -#include "mitkTimeSlicedGeometry.h" #include "mitkRotationOperation.h" #include "mitkInteractionConst.h" #include "mitkPlanePositionManager.h" #include "mitkTestingMacros.h" #include "mitkGetModuleContext.h" #include #include #include bool operator==(const mitk::Geometry3D & left, const mitk::Geometry3D & right) { mitk::BoundingBox::BoundsArrayType leftbounds, rightbounds; leftbounds =left.GetBounds(); rightbounds=right.GetBounds(); unsigned int i; for(i=0;i<6;++i) if(mitk::Equal(leftbounds[i],rightbounds[i])==false) return false; const mitk::Geometry3D::TransformType::MatrixType & leftmatrix = left.GetIndexToWorldTransform()->GetMatrix(); const mitk::Geometry3D::TransformType::MatrixType & rightmatrix = right.GetIndexToWorldTransform()->GetMatrix(); unsigned int j; for(i=0;i<3;++i) { const mitk::Geometry3D::TransformType::MatrixType::ValueType* leftvector = leftmatrix[i]; const mitk::Geometry3D::TransformType::MatrixType::ValueType* rightvector = rightmatrix[i]; for(j=0;j<3;++j) if(mitk::Equal(leftvector[i],rightvector[i])==false) return false; } const mitk::Geometry3D::TransformType::OffsetType & leftoffset = left.GetIndexToWorldTransform()->GetOffset(); const mitk::Geometry3D::TransformType::OffsetType & rightoffset = right.GetIndexToWorldTransform()->GetOffset(); for(i=0;i<3;++i) if(mitk::Equal(leftoffset[i],rightoffset[i])==false) return false; return true; } -int compareGeometry(const mitk::Geometry3D & geometry, +int compareGeometry(const mitk::TimeGeometry & geometry, const mitk::ScalarType& width, const mitk::ScalarType& height, const mitk::ScalarType& numSlices, const mitk::ScalarType& widthInMM, const mitk::ScalarType& heightInMM, const mitk::ScalarType& thicknessInMM, const mitk::Point3D& cornerpoint0, const mitk::Vector3D& right, const mitk::Vector3D& bottom, const mitk::Vector3D& normal) { + //Probleme durch umstellung von TimeSlicedGeometry auf TimeGeometry? + //Eventuell gibt es keine Entsprechung mehr. std::cout << "Testing width, height and thickness (in units): "; - if((mitk::Equal(geometry.GetExtent(0),width)==false) || - (mitk::Equal(geometry.GetExtent(1),height)==false) || - (mitk::Equal(geometry.GetExtent(2),numSlices)==false) + if((mitk::Equal(geometry.GetExtendInWorld(0),width)==false) || + (mitk::Equal(geometry.GetExtendInWorld(1),height)==false) || + (mitk::Equal(geometry.GetExtendInWorld(2),numSlices)==false) ) { std::cout<<"[FAILED]"<GetAxisVector(0), dv)==false)) { std::cout<<"[FAILED]"<GetAxisVector(1), dv)==false)) { std::cout<<"[FAILED]"<GetAxisVector(2), dv)==false)) { std::cout<<"[FAILED]"<GetCornerPoint(0),cornerpoint0)==false)) { std::cout<<"[FAILED]"<GetCornerPoint(0), cornerpoint0)==false) { std::cout<<"[FAILED]"<SetInputWorldGeometry(geometry); + sliceCtrl->SetInputWorldGeometry3D(geometry); std::cout<<"[PASSED]"<SetViewDirection(mitk::SliceNavigationController::Axial); std::cout<<"[PASSED]"<Update(); std::cout<<"[PASSED]"<GetCreatedWorldGeometry(), width, height, numSlices, widthInMM, heightInMM, thicknessInMM*numSlices, axialcornerpoint0, right, bottom*(-1.0), normal*(-1.0)); if(result!=EXIT_SUCCESS) { std::cout<<"[FAILED]"<SetViewDirection(mitk::SliceNavigationController::Frontal); std::cout<<"[PASSED]"<Update(); std::cout<<"[PASSED]"<GetAxisVector(1)*(+0.5/geometry->GetExtent(1)); result = compareGeometry(*sliceCtrl->GetCreatedWorldGeometry(), width, numSlices, height, widthInMM, thicknessInMM*numSlices, heightInMM, frontalcornerpoint0, right, normal, bottom); if(result!=EXIT_SUCCESS) { std::cout<<"[FAILED]"<SetViewDirection(mitk::SliceNavigationController::Sagittal); std::cout<<"[PASSED]"<Update(); std::cout<<"[PASSED]"<GetAxisVector(0)*(+0.5/geometry->GetExtent(0)); result = compareGeometry(*sliceCtrl->GetCreatedWorldGeometry(), height, numSlices, width, heightInMM, thicknessInMM*numSlices, widthInMM, sagittalcornerpoint0, bottom, normal, right); if(result!=EXIT_SUCCESS) { std::cout<<"[FAILED]"<InitializeStandardPlane(right.Get_vnl_vector(), bottom.Get_vnl_vector(), &spacing); planegeometry->SetOrigin(origin); //Create SlicedGeometry3D out of planeGeometry mitk::SlicedGeometry3D::Pointer slicedgeometry1 = mitk::SlicedGeometry3D::New(); unsigned int numSlices = 20; slicedgeometry1->InitializeEvenlySpaced(planegeometry, thicknessInMM, numSlices, false); //Create another slicedgeo which will be rotated mitk::SlicedGeometry3D::Pointer slicedgeometry2 = mitk::SlicedGeometry3D::New(); slicedgeometry2->InitializeEvenlySpaced(planegeometry, thicknessInMM, numSlices, false); //Create geo3D as reference mitk::Geometry3D::Pointer geometry = mitk::Geometry3D::New(); geometry->SetBounds(slicedgeometry1->GetBounds()); geometry->SetIndexToWorldTransform(slicedgeometry1->GetIndexToWorldTransform()); //Initialize planes for (int i=0; i < (int)numSlices; i++) { mitk::PlaneGeometry::Pointer geo2d = mitk::PlaneGeometry::New(); geo2d->Initialize(); geo2d->SetReferenceGeometry(geometry); slicedgeometry1->SetGeometry2D(geo2d,i); } for (int i=0; i < (int)numSlices; i++) { mitk::PlaneGeometry::Pointer geo2d = mitk::PlaneGeometry::New(); geo2d->Initialize(); geo2d->SetReferenceGeometry(geometry); slicedgeometry2->SetGeometry2D(geo2d,i); } slicedgeometry1->SetReferenceGeometry(geometry); slicedgeometry2->SetReferenceGeometry(geometry); //Create SNC mitk::SliceNavigationController::Pointer sliceCtrl1 = mitk::SliceNavigationController::New(); - sliceCtrl1->SetInputWorldGeometry(slicedgeometry1); + sliceCtrl1->SetInputWorldGeometry3D(slicedgeometry1); sliceCtrl1->Update(); mitk::SliceNavigationController::Pointer sliceCtrl2 = mitk::SliceNavigationController::New(); - sliceCtrl2->SetInputWorldGeometry(slicedgeometry2); + sliceCtrl2->SetInputWorldGeometry3D(slicedgeometry2); sliceCtrl2->Update(); slicedgeometry1->SetSliceNavigationController(sliceCtrl1); slicedgeometry2->SetSliceNavigationController(sliceCtrl2); // Whats current geometry? MITK_INFO << "center: " << sliceCtrl1->GetCurrentPlaneGeometry()->GetCenter(); MITK_INFO << "normal: " << sliceCtrl1->GetCurrentPlaneGeometry()->GetNormal(); MITK_INFO << "origin: " << sliceCtrl1->GetCurrentPlaneGeometry()->GetOrigin(); MITK_INFO << "axis0 : " << sliceCtrl1->GetCurrentPlaneGeometry()->GetAxisVector(0); MITK_INFO << "aixs1 : " << sliceCtrl1->GetCurrentPlaneGeometry()->GetAxisVector(1); // // Now reorient slices (ONE POINT, ONE NORMAL) mitk::Point3D oldCenter, oldOrigin; mitk::Vector3D oldAxis0, oldAxis1; oldCenter = sliceCtrl1->GetCurrentPlaneGeometry()->GetCenter(); oldOrigin = sliceCtrl1->GetCurrentPlaneGeometry()->GetOrigin(); oldAxis0 = sliceCtrl1->GetCurrentPlaneGeometry()->GetAxisVector(0); oldAxis1 = sliceCtrl1->GetCurrentPlaneGeometry()->GetAxisVector(1); mitk::Point3D orientCenter; mitk::Vector3D orientNormal; orientCenter = oldCenter; mitk::FillVector3D(orientNormal, 0.3, 0.1, 0.8); orientNormal.Normalize(); sliceCtrl1->ReorientSlices(orientCenter,orientNormal); mitk::Point3D newCenter, newOrigin; mitk::Vector3D newNormal; newCenter = sliceCtrl1->GetCurrentPlaneGeometry()->GetCenter(); newOrigin = sliceCtrl1->GetCurrentPlaneGeometry()->GetOrigin(); newNormal = sliceCtrl1->GetCurrentPlaneGeometry()->GetNormal(); newNormal.Normalize(); itk::Index<3> orientCenterIdx; itk::Index<3> newCenterIdx; sliceCtrl1->GetCurrentGeometry3D()->WorldToIndex(orientCenter, orientCenterIdx); sliceCtrl1->GetCurrentGeometry3D()->WorldToIndex(newCenter, newCenterIdx); if ( (newCenterIdx != orientCenterIdx) || ( !mitk::Equal(orientNormal, newNormal) ) ) { MITK_INFO << "Reorient Planes (1 point, 1 vector) not working as it should"; MITK_INFO << "orientCenterIdx: " << orientCenterIdx; MITK_INFO << "newCenterIdx: " << newCenterIdx; MITK_INFO << "orientNormal: " << orientNormal; MITK_INFO << "newNormal: " << newNormal; return EXIT_FAILURE; } // // Now reorient slices (center, vec0, vec1 ) mitk::Vector3D orientAxis0, orientAxis1, newAxis0, newAxis1; mitk::FillVector3D(orientAxis0, 1.0, 0.0, 0.0); mitk::FillVector3D(orientAxis1, 0.0, 1.0, 0.0); orientAxis0.Normalize(); orientAxis1.Normalize(); sliceCtrl1->ReorientSlices(orientCenter,orientAxis0, orientAxis1); newAxis0 = sliceCtrl1->GetCurrentPlaneGeometry()->GetAxisVector(0); newAxis1 = sliceCtrl1->GetCurrentPlaneGeometry()->GetAxisVector(1); newCenter = sliceCtrl1->GetCurrentPlaneGeometry()->GetCenter(); newAxis0.Normalize(); newAxis1.Normalize(); sliceCtrl1->GetCurrentGeometry3D()->WorldToIndex(orientCenter, orientCenterIdx); sliceCtrl1->GetCurrentGeometry3D()->WorldToIndex(newCenter, newCenterIdx); if ( (newCenterIdx != orientCenterIdx) || ( !mitk::Equal(orientAxis0, newAxis0) ) || ( !mitk::Equal(orientAxis1, newAxis1) ) ) { MITK_INFO << "Reorient Planes (point, vec, vec) not working as it should"; MITK_INFO << "orientCenterIdx: " << orientCenterIdx; MITK_INFO << "newCenterIdx: " << newCenterIdx; MITK_INFO << "orientAxis0: " << orientAxis0; MITK_INFO << "newAxis0: " << newAxis0; MITK_INFO << "orientAxis1: " << orientAxis1; MITK_INFO << "newAxis1: " << newAxis1; return EXIT_FAILURE; } return EXIT_SUCCESS; } int testRestorePlanePostionOperation () { //Create PlaneGeometry mitk::PlaneGeometry::Pointer planegeometry = mitk::PlaneGeometry::New(); mitk::Point3D origin; mitk::Vector3D right, bottom, normal; mitk::ScalarType width, height; mitk::ScalarType widthInMM, heightInMM, thicknessInMM; width = 100; widthInMM = width; height = 200; heightInMM = height; thicknessInMM = 1.5; mitk::FillVector3D(origin, 4.5, 7.3, 11.2); mitk::FillVector3D(right, widthInMM, 0, 0); mitk::FillVector3D(bottom, 0, heightInMM, 0); mitk::FillVector3D(normal, 0, 0, thicknessInMM); mitk::Vector3D spacing; normal.Normalize(); normal *= thicknessInMM; mitk::FillVector3D(spacing, 1.0, 1.0, thicknessInMM); planegeometry->InitializeStandardPlane(right.Get_vnl_vector(), bottom.Get_vnl_vector(), &spacing); planegeometry->SetOrigin(origin); //Create SlicedGeometry3D out of planeGeometry mitk::SlicedGeometry3D::Pointer slicedgeometry1 = mitk::SlicedGeometry3D::New(); unsigned int numSlices = 300; slicedgeometry1->InitializeEvenlySpaced(planegeometry, thicknessInMM, numSlices, false); //Create another slicedgeo which will be rotated mitk::SlicedGeometry3D::Pointer slicedgeometry2 = mitk::SlicedGeometry3D::New(); slicedgeometry2->InitializeEvenlySpaced(planegeometry, thicknessInMM, numSlices, false); //Create geo3D as reference mitk::Geometry3D::Pointer geometry = mitk::Geometry3D::New(); geometry->SetBounds(slicedgeometry1->GetBounds()); geometry->SetIndexToWorldTransform(slicedgeometry1->GetIndexToWorldTransform()); //Initialize planes for (int i=0; i < (int)numSlices; i++) { mitk::PlaneGeometry::Pointer geo2d = mitk::PlaneGeometry::New(); geo2d->Initialize(); geo2d->SetReferenceGeometry(geometry); slicedgeometry1->SetGeometry2D(geo2d,i); } for (int i=0; i < (int)numSlices; i++) { mitk::PlaneGeometry::Pointer geo2d = mitk::PlaneGeometry::New(); geo2d->Initialize(); geo2d->SetReferenceGeometry(geometry); slicedgeometry2->SetGeometry2D(geo2d,i); } slicedgeometry1->SetReferenceGeometry(geometry); slicedgeometry2->SetReferenceGeometry(geometry); //Create SNC mitk::SliceNavigationController::Pointer sliceCtrl1 = mitk::SliceNavigationController::New(); - sliceCtrl1->SetInputWorldGeometry(slicedgeometry1); + sliceCtrl1->SetInputWorldGeometry3D(slicedgeometry1); sliceCtrl1->Update(); mitk::SliceNavigationController::Pointer sliceCtrl2 = mitk::SliceNavigationController::New(); - sliceCtrl2->SetInputWorldGeometry(slicedgeometry2); + sliceCtrl2->SetInputWorldGeometry3D(slicedgeometry2); sliceCtrl2->Update(); slicedgeometry1->SetSliceNavigationController(sliceCtrl1); slicedgeometry2->SetSliceNavigationController(sliceCtrl2); //Rotate slicedgeo2 double angle = 63.84; mitk::Vector3D rotationVector; mitk::FillVector3D( rotationVector, 0.5, 0.95, 0.23 ); mitk::Point3D center = slicedgeometry2->GetCenter(); mitk::RotationOperation* op = new mitk::RotationOperation( mitk::OpROTATE, center, rotationVector, angle ); slicedgeometry2->ExecuteOperation(op); sliceCtrl2->Update(); mitk::ServiceReference serviceRef = mitk::GetModuleContext()->GetServiceReference(); mitk::PlanePositionManagerService* service = dynamic_cast(mitk::GetModuleContext()->GetService(serviceRef)); service->AddNewPlanePosition(slicedgeometry2->GetGeometry2D(0), 178); sliceCtrl1->ExecuteOperation(service->GetPlanePosition(0)); sliceCtrl1->Update(); mitk::Geometry2D* planeRotated = slicedgeometry2->GetGeometry2D(178); mitk::Geometry2D* planeRestored = dynamic_cast< const mitk::SlicedGeometry3D*>(sliceCtrl1->GetCurrentGeometry3D())->GetGeometry2D(178); try{ MITK_TEST_CONDITION_REQUIRED(mitk::MatrixEqualElementWise(planeRotated->GetIndexToWorldTransform()->GetMatrix(), planeRestored->GetIndexToWorldTransform()->GetMatrix()),"Testing for IndexToWorld"); MITK_TEST_CONDITION_REQUIRED(mitk::Equal(planeRotated->GetOrigin(), planeRestored->GetOrigin(),2*mitk::eps),"Testing for origin"); MITK_TEST_CONDITION_REQUIRED(mitk::Equal(planeRotated->GetSpacing(), planeRestored->GetSpacing()),"Testing for spacing"); MITK_TEST_CONDITION_REQUIRED(mitk::Equal(slicedgeometry2->GetDirectionVector(), dynamic_cast< const mitk::SlicedGeometry3D*>(sliceCtrl1->GetCurrentGeometry3D())->GetDirectionVector()),"Testing for directionvector"); MITK_TEST_CONDITION_REQUIRED(mitk::Equal(slicedgeometry2->GetSlices(), dynamic_cast< const mitk::SlicedGeometry3D*>(sliceCtrl1->GetCurrentGeometry3D())->GetSlices()),"Testing for numslices"); MITK_TEST_CONDITION_REQUIRED(mitk::MatrixEqualElementWise(slicedgeometry2->GetIndexToWorldTransform()->GetMatrix(), dynamic_cast< const mitk::SlicedGeometry3D*>(sliceCtrl1->GetCurrentGeometry3D())->GetIndexToWorldTransform()->GetMatrix()),"Testing for IndexToWorld"); } catch(...) { return EXIT_FAILURE; } return EXIT_SUCCESS; } int mitkSliceNavigationControllerTest(int /*argc*/, char* /*argv*/[]) { int result=EXIT_FAILURE; std::cout << "Creating and initializing a PlaneGeometry: "; mitk::PlaneGeometry::Pointer planegeometry = mitk::PlaneGeometry::New(); mitk::Point3D origin; mitk::Vector3D right, bottom, normal; mitk::ScalarType width, height; mitk::ScalarType widthInMM, heightInMM, thicknessInMM; width = 100; widthInMM = width; height = 200; heightInMM = height; thicknessInMM = 1.5; // mitk::FillVector3D(origin, 0, 0, thicknessInMM*0.5); mitk::FillVector3D(origin, 4.5, 7.3, 11.2); mitk::FillVector3D(right, widthInMM, 0, 0); mitk::FillVector3D(bottom, 0, heightInMM, 0); mitk::FillVector3D(normal, 0, 0, thicknessInMM); mitk::Vector3D spacing; normal.Normalize(); normal *= thicknessInMM; mitk::FillVector3D(spacing, 1.0, 1.0, thicknessInMM); planegeometry->InitializeStandardPlane(right.Get_vnl_vector(), bottom.Get_vnl_vector(), &spacing); planegeometry->SetOrigin(origin); std::cout<<"[PASSED]"<InitializeEvenlySpaced(planegeometry, thicknessInMM, numSlices, false); std::cout<<"[PASSED]"<SetBounds(slicedgeometry->GetBounds()); geometry->SetIndexToWorldTransform(slicedgeometry->GetIndexToWorldTransform()); std::cout<<"[PASSED]"<GetCornerPoint(0); result=testGeometry(geometry, width, height, numSlices, widthInMM, heightInMM, thicknessInMM, cornerpoint0, right, bottom, normal); if(result!=EXIT_SUCCESS) return result; mitk::AffineTransform3D::Pointer transform = mitk::AffineTransform3D::New(); transform->SetMatrix(geometry->GetIndexToWorldTransform()->GetMatrix()); mitk::BoundingBox::Pointer boundingbox = geometry->CalculateBoundingBoxRelativeToTransform(transform); geometry->SetBounds(boundingbox->GetBounds()); cornerpoint0 = geometry->GetCornerPoint(0); result=testGeometry(geometry, width, height, numSlices, widthInMM, heightInMM, thicknessInMM, cornerpoint0, right, bottom, normal); if(result!=EXIT_SUCCESS) return result; std::cout << "Changing the IndexToWorldTransform of the geometry to a rotated version by SetIndexToWorldTransform() (keep cornerpoint0): "; transform = mitk::AffineTransform3D::New(); mitk::AffineTransform3D::MatrixType::InternalMatrixType vnlmatrix; vnlmatrix = planegeometry->GetIndexToWorldTransform()->GetMatrix().GetVnlMatrix(); mitk::VnlVector axis(3); mitk::FillVector3D(axis, 1.0, 1.0, 1.0); axis.normalize(); vnl_quaternion rotation(axis, 0.223); vnlmatrix = rotation.rotation_matrix_transpose()*vnlmatrix; mitk::Matrix3D matrix; matrix = vnlmatrix; transform->SetMatrix(matrix); transform->SetOffset(cornerpoint0.GetVectorFromOrigin()); right.Set_vnl_vector( rotation.rotation_matrix_transpose()*right.Get_vnl_vector() ); bottom.Set_vnl_vector(rotation.rotation_matrix_transpose()*bottom.Get_vnl_vector()); normal.Set_vnl_vector(rotation.rotation_matrix_transpose()*normal.Get_vnl_vector()); geometry->SetIndexToWorldTransform(transform); std::cout<<"[PASSED]"<GetCornerPoint(0); result = testGeometry(geometry, width, height, numSlices, widthInMM, heightInMM, thicknessInMM, cornerpoint0, right, bottom, normal); if(result!=EXIT_SUCCESS) return result; //Testing Execute RestorePlanePositionOperation result = testRestorePlanePostionOperation(); if(result!=EXIT_SUCCESS) return result; //Testing ReorientPlanes result = testReorientPlanes(); if(result!=EXIT_SUCCESS) return result; std::cout<<"[TEST DONE]"< #include #include void mitkSlicedGeometry3D_ChangeImageGeometryConsideringOriginOffset_Test() { //Tests for Offset MITK_TEST_OUTPUT( << "====== NOW RUNNING: Tests for pixel-center-based offset concerns ========"); // create a SlicedGeometry3D mitk::SlicedGeometry3D::Pointer slicedGeo3D=mitk::SlicedGeometry3D::New(); int num_slices = 5; slicedGeo3D->InitializeSlicedGeometry(num_slices); // 5 slices mitk::Point3D newOrigin; newOrigin[0] = 91.3; newOrigin[1] = -13.3; newOrigin[2] = 0; slicedGeo3D->SetOrigin(newOrigin); mitk::Vector3D newSpacing; newSpacing[0] = 1.0f; newSpacing[1] = 0.9f; newSpacing[2] = 0.3f; slicedGeo3D->SetSpacing(newSpacing); // create subslices as well for (int i=0; i < num_slices; i++) { mitk::Geometry2D::Pointer geo2d = mitk::Geometry2D::New(); geo2d->Initialize(); slicedGeo3D->SetGeometry2D(geo2d,i); } // now run tests MITK_TEST_OUTPUT( << "Testing whether slicedGeo3D->GetImageGeometry() is false by default"); MITK_TEST_CONDITION_REQUIRED( slicedGeo3D->GetImageGeometry()==false, ""); MITK_TEST_OUTPUT( << "Testing whether first and last geometry in the SlicedGeometry3D have GetImageGeometry()==false by default"); mitk::Geometry3D* subSliceGeo2D_first = slicedGeo3D->GetGeometry2D(0); mitk::Geometry3D* subSliceGeo2D_last = slicedGeo3D->GetGeometry2D(num_slices-1); MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_first->GetImageGeometry()==false, ""); MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_last->GetImageGeometry()==false, ""); // Save some Origins and cornerpoints mitk::Point3D OriginSlicedGeo( slicedGeo3D->GetOrigin() ); mitk::Point3D OriginFirstGeo( subSliceGeo2D_first->GetOrigin() ); mitk::Point3D OriginLastGeo( subSliceGeo2D_last->GetOrigin() ); mitk::Point3D CornerPoint0SlicedGeo(slicedGeo3D->GetCornerPoint(0)); mitk::Point3D CornerPoint1FirstGeo(subSliceGeo2D_first->GetCornerPoint(1)); mitk::Point3D CornerPoint2LastGeo(subSliceGeo2D_last->GetCornerPoint(2)); MITK_TEST_OUTPUT( << "Calling slicedGeo3D->ChangeImageGeometryConsideringOriginOffset(true)"); //std::cout << "vorher Origin: " << subSliceGeo2D_first->GetOrigin() << std::endl; //std::cout << "vorher Corner: " << subSliceGeo2D_first->GetCornerPoint(0) << std::endl; slicedGeo3D->ChangeImageGeometryConsideringOriginOffset(true); //std::cout << "nachher Origin: " << subSliceGeo2D_first->GetOrigin() << std::endl; //std::cout << "nachher Corner: " << subSliceGeo2D_first->GetCornerPoint(0) << std::endl; MITK_TEST_OUTPUT( << "Testing whether slicedGeo3D->GetImageGeometry() is now true"); MITK_TEST_CONDITION_REQUIRED( slicedGeo3D->GetImageGeometry()==true, ""); MITK_TEST_OUTPUT( << "Testing whether first and last geometry in the SlicedGeometry3D have GetImageGeometry()==true now"); MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_first->GetImageGeometry()==true, ""); MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_last->GetImageGeometry()==true, ""); MITK_TEST_OUTPUT( << "Testing wether offset has been added to origins"); // Manually adding Offset. OriginSlicedGeo[0] += (slicedGeo3D->GetSpacing()[0]) / 2; OriginSlicedGeo[1] += (slicedGeo3D->GetSpacing()[1]) / 2; OriginSlicedGeo[2] += (slicedGeo3D->GetSpacing()[2]) / 2; OriginFirstGeo[0] += (subSliceGeo2D_first->GetSpacing()[0]) / 2; OriginFirstGeo[1] += (subSliceGeo2D_first->GetSpacing()[1]) / 2; OriginFirstGeo[2] += (subSliceGeo2D_first->GetSpacing()[2]) / 2; OriginLastGeo[0] += (subSliceGeo2D_last->GetSpacing()[0]) / 2; OriginLastGeo[1] += (subSliceGeo2D_last->GetSpacing()[1]) / 2; OriginLastGeo[2] += (subSliceGeo2D_last->GetSpacing()[2]) / 2; MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_first->GetCornerPoint(1)==CornerPoint1FirstGeo, ""); MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_last->GetCornerPoint(2)==CornerPoint2LastGeo, ""); MITK_TEST_CONDITION_REQUIRED( slicedGeo3D->GetCornerPoint(0)==CornerPoint0SlicedGeo, ""); MITK_TEST_CONDITION_REQUIRED( slicedGeo3D->GetOrigin()==OriginSlicedGeo, ""); MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_first->GetOrigin()==OriginFirstGeo, ""); MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_last->GetOrigin()==OriginLastGeo, ""); MITK_TEST_OUTPUT( << "Calling slicedGeo3D->ChangeImageGeometryConsideringOriginOffset(false)"); slicedGeo3D->ChangeImageGeometryConsideringOriginOffset(false); MITK_TEST_OUTPUT( << "Testing whether slicedGeo3D->GetImageGeometry() is now false"); MITK_TEST_CONDITION_REQUIRED( slicedGeo3D->GetImageGeometry()==false, ""); MITK_TEST_OUTPUT( << "Testing whether first and last geometry in the SlicedGeometry3D have GetImageGeometry()==false now"); MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_first->GetImageGeometry()==false, ""); MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_last->GetImageGeometry()==false, ""); MITK_TEST_OUTPUT( << "Testing wether offset has been added to origins of geometry"); // Manually substracting Offset. OriginSlicedGeo[0] -= (slicedGeo3D->GetSpacing()[0]) / 2; OriginSlicedGeo[1] -= (slicedGeo3D->GetSpacing()[1]) / 2; OriginSlicedGeo[2] -= (slicedGeo3D->GetSpacing()[2]) / 2; OriginFirstGeo[0] -= (subSliceGeo2D_first->GetSpacing()[0]) / 2; OriginFirstGeo[1] -= (subSliceGeo2D_first->GetSpacing()[1]) / 2; OriginFirstGeo[2] -= (subSliceGeo2D_first->GetSpacing()[2]) / 2; OriginLastGeo[0] -= (subSliceGeo2D_last->GetSpacing()[0]) / 2; OriginLastGeo[1] -= (subSliceGeo2D_last->GetSpacing()[1]) / 2; OriginLastGeo[2] -= (subSliceGeo2D_last->GetSpacing()[2]) / 2; MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_first->GetCornerPoint(1)==CornerPoint1FirstGeo, ""); MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_last->GetCornerPoint(2)==CornerPoint2LastGeo, ""); MITK_TEST_CONDITION_REQUIRED( slicedGeo3D->GetCornerPoint(0)==CornerPoint0SlicedGeo, ""); MITK_TEST_CONDITION_REQUIRED( slicedGeo3D->GetOrigin()==OriginSlicedGeo, ""); MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_first->GetOrigin()==OriginFirstGeo, ""); MITK_TEST_CONDITION_REQUIRED( subSliceGeo2D_last->GetOrigin()==OriginLastGeo, ""); MITK_TEST_OUTPUT( << "ALL SUCCESSFULLY!"); } int mitkSlicedGeometry3DTest(int /*argc*/, char* /*argv*/[]) { mitk::PlaneGeometry::Pointer planegeometry1 = mitk::PlaneGeometry::New(); mitk::Point3D origin; mitk::Vector3D right, bottom, normal; mitk::ScalarType width, height; mitk::ScalarType widthInMM, heightInMM, thicknessInMM; width = 100; widthInMM = width; height = 200; heightInMM = height; thicknessInMM = 3.5; mitk::FillVector3D(origin, 4.5, 7.3, 11.2); mitk::FillVector3D(right, widthInMM, 0, 0); mitk::FillVector3D(bottom, 0, heightInMM, 0); mitk::FillVector3D(normal, 0, 0, thicknessInMM); std::cout << "Initializing planegeometry1 by InitializeStandardPlane(rightVector, downVector, spacing = NULL): "<InitializeStandardPlane(right.Get_vnl_vector(), bottom.Get_vnl_vector()); std::cout << "Setting planegeometry2 to a cloned version of planegeometry1: "<(planegeometry1->Clone().GetPointer());; std::cout << "Changing the IndexToWorldTransform of planegeometry2 to a rotated version by SetIndexToWorldTransform() (keep origin): "<GetIndexToWorldTransform()->GetMatrix().GetVnlMatrix(); mitk::VnlVector axis(3); mitk::FillVector3D(axis, 1.0, 1.0, 1.0); axis.normalize(); vnl_quaternion rotation(axis, 0.123); vnlmatrix = rotation.rotation_matrix_transpose()*vnlmatrix; mitk::Matrix3D matrix; matrix = vnlmatrix; transform->SetMatrix(matrix); transform->SetOffset(planegeometry2->GetIndexToWorldTransform()->GetOffset()); right.Set_vnl_vector( rotation.rotation_matrix_transpose()*right.Get_vnl_vector() ); bottom.Set_vnl_vector(rotation.rotation_matrix_transpose()*bottom.Get_vnl_vector()); normal.Set_vnl_vector(rotation.rotation_matrix_transpose()*normal.Get_vnl_vector()); planegeometry2->SetIndexToWorldTransform(transform); std::cout << "Setting planegeometry3 to the backside of planegeometry2: " <InitializeStandardPlane(planegeometry2, mitk::PlaneGeometry::Axial, 0, false); std::cout << "Testing SlicedGeometry3D::InitializeEvenlySpaced(planegeometry3, zSpacing = 1, slices = 5, flipped = false): " <InitializeEvenlySpaced(planegeometry3, 1, numSlices, false); std::cout << "Testing availability and type (PlaneGeometry) of first geometry in the SlicedGeometry3D: "; mitk::PlaneGeometry* accessedplanegeometry3 = dynamic_cast(slicedWorldGeometry->GetGeometry2D(0)); if(accessedplanegeometry3==NULL) { std::cout<<"[FAILED]"<GetAxisVector(0), planegeometry3->GetAxisVector(0))==false) || (mitk::Equal(accessedplanegeometry3->GetAxisVector(1), planegeometry3->GetAxisVector(1))==false) || (mitk::Equal(accessedplanegeometry3->GetAxisVector(2), planegeometry3->GetAxisVector(2))==false) || (mitk::Equal(accessedplanegeometry3->GetOrigin(), planegeometry3->GetOrigin())==false)) { std::cout<<"[FAILED]"<(slicedWorldGeometry->GetGeometry2D(numSlices-1)); mitk::Point3D origin3last; origin3last = planegeometry3->GetOrigin()+slicedWorldGeometry->GetDirectionVector()*(numSlices-1); if(accessedplanegeometry3last==NULL) { std::cout<<"[FAILED]"<GetAxisVector(0), planegeometry3->GetAxisVector(0))==false) || (mitk::Equal(accessedplanegeometry3last->GetAxisVector(1), planegeometry3->GetAxisVector(1))==false) || (mitk::Equal(accessedplanegeometry3last->GetAxisVector(2), planegeometry3->GetAxisVector(2))==false) || (mitk::Equal(accessedplanegeometry3last->GetOrigin(), origin3last)==false) || (mitk::Equal(accessedplanegeometry3last->GetIndexToWorldTransform()->GetOffset(), origin3last.GetVectorFromOrigin())==false)) { std::cout<<"[FAILED]"<(slicedWorldGeometry->GetGeometry2D(0)); if(accessedplanegeometry3==NULL) { std::cout<<"[FAILED]"<GetAxisVector(0), planegeometry3->GetAxisVector(0))==false) || (mitk::Equal(accessedplanegeometry3->GetAxisVector(1), planegeometry3->GetAxisVector(1))==false) || (mitk::Equal(accessedplanegeometry3->GetAxisVector(2), planegeometry3->GetAxisVector(2))==false) || (mitk::Equal(accessedplanegeometry3->GetOrigin(), planegeometry3->GetOrigin())==false) || (mitk::Equal(accessedplanegeometry3->GetIndexToWorldTransform()->GetOffset(), planegeometry3->GetOrigin().GetVectorFromOrigin())==false)) { std::cout<<"[FAILED]"< #include #include #include #include #include #include #include #include "mitkProperties.h" #include "mitkGeometry2DDataMapper2D.h" #include "mitkGlobalInteraction.h" #include "mitkDisplayInteractor.h" #include "mitkPointSet.h" #include "mitkPositionEvent.h" #include "mitkStateEvent.h" #include "mitkLine.h" #include "mitkInteractionConst.h" #include "mitkDataStorage.h" #include "mitkNodePredicateBase.h" #include "mitkNodePredicateDataType.h" #include "mitkNodePredicateNot.h" #include "mitkNodePredicateProperty.h" #include "mitkStatusBar.h" #include "mitkImage.h" #include "mitkVtkLayerController.h" #include QmitkStdMultiWidget::QmitkStdMultiWidget(QWidget* parent, Qt::WindowFlags f, mitk::RenderingManager* renderingManager) : QWidget(parent, f), mitkWidget1(NULL), mitkWidget2(NULL), mitkWidget3(NULL), mitkWidget4(NULL), levelWindowWidget(NULL), QmitkStdMultiWidgetLayout(NULL), m_Layout(LAYOUT_DEFAULT), m_PlaneMode(PLANE_MODE_SLICING), m_RenderingManager(renderingManager), m_GradientBackgroundFlag(true), m_TimeNavigationController(NULL), m_MainSplit(NULL), m_LayoutSplit(NULL), m_SubSplit1(NULL), m_SubSplit2(NULL), mitkWidget1Container(NULL), mitkWidget2Container(NULL), mitkWidget3Container(NULL), mitkWidget4Container(NULL), m_PendingCrosshairPositionEvent(false), m_CrosshairNavigationEnabled(false) { /****************************************************** * Use the global RenderingManager if none was specified * ****************************************************/ if (m_RenderingManager == NULL) { m_RenderingManager = mitk::RenderingManager::GetInstance(); } m_TimeNavigationController = m_RenderingManager->GetTimeNavigationController(); /*******************************/ //Create Widget manually /*******************************/ //create Layouts QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); QmitkStdMultiWidgetLayout->setContentsMargins(0,0,0,0); //Set Layout to widget this->setLayout(QmitkStdMultiWidgetLayout); // QmitkNavigationToolBar* toolBar = new QmitkNavigationToolBar(); // QmitkStdMultiWidgetLayout->addWidget( toolBar ); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //create m_LayoutSplit and add to the mainSplit m_LayoutSplit = new QSplitter( Qt::Vertical, m_MainSplit ); m_MainSplit->addWidget( m_LayoutSplit ); //create m_SubSplit1 and m_SubSplit2 m_SubSplit1 = new QSplitter( m_LayoutSplit ); m_SubSplit2 = new QSplitter( m_LayoutSplit ); //creae Widget Container mitkWidget1Container = new QWidget(m_SubSplit1); mitkWidget2Container = new QWidget(m_SubSplit1); mitkWidget3Container = new QWidget(m_SubSplit2); mitkWidget4Container = new QWidget(m_SubSplit2); mitkWidget1Container->setContentsMargins(0,0,0,0); mitkWidget2Container->setContentsMargins(0,0,0,0); mitkWidget3Container->setContentsMargins(0,0,0,0); mitkWidget4Container->setContentsMargins(0,0,0,0); //create Widget Layout QHBoxLayout *mitkWidgetLayout1 = new QHBoxLayout(mitkWidget1Container); QHBoxLayout *mitkWidgetLayout2 = new QHBoxLayout(mitkWidget2Container); QHBoxLayout *mitkWidgetLayout3 = new QHBoxLayout(mitkWidget3Container); QHBoxLayout *mitkWidgetLayout4 = new QHBoxLayout(mitkWidget4Container); mitkWidgetLayout1->setMargin(0); mitkWidgetLayout2->setMargin(0); mitkWidgetLayout3->setMargin(0); mitkWidgetLayout4->setMargin(0); //set Layout to Widget Container mitkWidget1Container->setLayout(mitkWidgetLayout1); mitkWidget2Container->setLayout(mitkWidgetLayout2); mitkWidget3Container->setLayout(mitkWidgetLayout3); mitkWidget4Container->setLayout(mitkWidgetLayout4); //set SizePolicy mitkWidget1Container->setSizePolicy(QSizePolicy::Expanding,QSizePolicy::Expanding); mitkWidget2Container->setSizePolicy(QSizePolicy::Expanding,QSizePolicy::Expanding); mitkWidget3Container->setSizePolicy(QSizePolicy::Expanding,QSizePolicy::Expanding); mitkWidget4Container->setSizePolicy(QSizePolicy::Expanding,QSizePolicy::Expanding); //insert Widget Container into the splitters m_SubSplit1->addWidget( mitkWidget1Container ); m_SubSplit1->addWidget( mitkWidget2Container ); m_SubSplit2->addWidget( mitkWidget3Container ); m_SubSplit2->addWidget( mitkWidget4Container ); // m_RenderingManager->SetGlobalInteraction( mitk::GlobalInteraction::GetInstance() ); //Create RenderWindows 1 mitkWidget1 = new QmitkRenderWindow(mitkWidget1Container, "stdmulti.widget1", NULL, m_RenderingManager); mitkWidget1->setMaximumSize(2000,2000); mitkWidget1->SetLayoutIndex( AXIAL ); mitkWidgetLayout1->addWidget(mitkWidget1); //Create RenderWindows 2 mitkWidget2 = new QmitkRenderWindow(mitkWidget2Container, "stdmulti.widget2", NULL, m_RenderingManager); mitkWidget2->setMaximumSize(2000,2000); mitkWidget2->setEnabled( TRUE ); mitkWidget2->SetLayoutIndex( SAGITTAL ); mitkWidgetLayout2->addWidget(mitkWidget2); //Create RenderWindows 3 mitkWidget3 = new QmitkRenderWindow(mitkWidget3Container, "stdmulti.widget3", NULL, m_RenderingManager); mitkWidget3->setMaximumSize(2000,2000); mitkWidget3->SetLayoutIndex( CORONAL ); mitkWidgetLayout3->addWidget(mitkWidget3); //Create RenderWindows 4 mitkWidget4 = new QmitkRenderWindow(mitkWidget4Container, "stdmulti.widget4", NULL, m_RenderingManager); mitkWidget4->setMaximumSize(2000,2000); mitkWidget4->SetLayoutIndex( THREE_D ); mitkWidgetLayout4->addWidget(mitkWidget4); //create SignalSlot Connection connect( mitkWidget1, SIGNAL( SignalLayoutDesignChanged(int) ), this, SLOT( OnLayoutDesignChanged(int) ) ); connect( mitkWidget1, SIGNAL( ResetView() ), this, SLOT( ResetCrosshair() ) ); connect( mitkWidget1, SIGNAL( ChangeCrosshairRotationMode(int) ), this, SLOT( SetWidgetPlaneMode(int) ) ); connect( this, SIGNAL(WidgetNotifyNewCrossHairMode(int)), mitkWidget1, SLOT(OnWidgetPlaneModeChanged(int)) ); connect( mitkWidget2, SIGNAL( SignalLayoutDesignChanged(int) ), this, SLOT( OnLayoutDesignChanged(int) ) ); connect( mitkWidget2, SIGNAL( ResetView() ), this, SLOT( ResetCrosshair() ) ); connect( mitkWidget2, SIGNAL( ChangeCrosshairRotationMode(int) ), this, SLOT( SetWidgetPlaneMode(int) ) ); connect( this, SIGNAL(WidgetNotifyNewCrossHairMode(int)), mitkWidget2, SLOT(OnWidgetPlaneModeChanged(int)) ); connect( mitkWidget3, SIGNAL( SignalLayoutDesignChanged(int) ), this, SLOT( OnLayoutDesignChanged(int) ) ); connect( mitkWidget3, SIGNAL( ResetView() ), this, SLOT( ResetCrosshair() ) ); connect( mitkWidget3, SIGNAL( ChangeCrosshairRotationMode(int) ), this, SLOT( SetWidgetPlaneMode(int) ) ); connect( this, SIGNAL(WidgetNotifyNewCrossHairMode(int)), mitkWidget3, SLOT(OnWidgetPlaneModeChanged(int)) ); connect( mitkWidget4, SIGNAL( SignalLayoutDesignChanged(int) ), this, SLOT( OnLayoutDesignChanged(int) ) ); connect( mitkWidget4, SIGNAL( ResetView() ), this, SLOT( ResetCrosshair() ) ); connect( mitkWidget4, SIGNAL( ChangeCrosshairRotationMode(int) ), this, SLOT( SetWidgetPlaneMode(int) ) ); connect( this, SIGNAL(WidgetNotifyNewCrossHairMode(int)), mitkWidget4, SLOT(OnWidgetPlaneModeChanged(int)) ); //Create Level Window Widget levelWindowWidget = new QmitkLevelWindowWidget( m_MainSplit ); //this levelWindowWidget->setObjectName(QString::fromUtf8("levelWindowWidget")); QSizePolicy sizePolicy(QSizePolicy::Preferred, QSizePolicy::Preferred); sizePolicy.setHorizontalStretch(0); sizePolicy.setVerticalStretch(0); sizePolicy.setHeightForWidth(levelWindowWidget->sizePolicy().hasHeightForWidth()); levelWindowWidget->setSizePolicy(sizePolicy); levelWindowWidget->setMaximumSize(QSize(50, 2000)); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //show mainSplitt and add to Layout m_MainSplit->show(); //resize Image. this->resize( QSize(364, 477).expandedTo(minimumSizeHint()) ); //Initialize the widgets. this->InitializeWidget(); //Activate Widget Menu this->ActivateMenuWidget( true ); } void QmitkStdMultiWidget::InitializeWidget() { m_PositionTracker = NULL; // transfer colors in WorldGeometry-Nodes of the associated Renderer QColor qcolor; //float color[3] = {1.0f,1.0f,1.0f}; mitk::DataNode::Pointer planeNode; mitk::IntProperty::Pointer layer; // of widget 1 planeNode = mitk::BaseRenderer::GetInstance(mitkWidget1->GetRenderWindow())->GetCurrentWorldGeometry2DNode(); planeNode->SetColor(1.0,0.0,0.0); layer = mitk::IntProperty::New(1000); planeNode->SetProperty("layer",layer); // ... of widget 2 planeNode = mitk::BaseRenderer::GetInstance(mitkWidget2->GetRenderWindow())->GetCurrentWorldGeometry2DNode(); planeNode->SetColor(0.0,1.0,0.0); layer = mitk::IntProperty::New(1000); planeNode->SetProperty("layer",layer); // ... of widget 3 planeNode = mitk::BaseRenderer::GetInstance(mitkWidget3->GetRenderWindow())->GetCurrentWorldGeometry2DNode(); planeNode->SetColor(0.0,0.0,1.0); layer = mitk::IntProperty::New(1000); planeNode->SetProperty("layer",layer); // ... of widget 4 planeNode = mitk::BaseRenderer::GetInstance(mitkWidget4->GetRenderWindow())->GetCurrentWorldGeometry2DNode(); planeNode->SetColor(1.0,1.0,0.0); layer = mitk::IntProperty::New(1000); planeNode->SetProperty("layer",layer); mitk::BaseRenderer::GetInstance(mitkWidget4->GetRenderWindow())->SetMapperID(mitk::BaseRenderer::Standard3D); // Set plane mode (slicing/rotation behavior) to slicing (default) m_PlaneMode = PLANE_MODE_SLICING; // Set default view directions for SNCs mitkWidget1->GetSliceNavigationController()->SetDefaultViewDirection( mitk::SliceNavigationController::Axial ); mitkWidget2->GetSliceNavigationController()->SetDefaultViewDirection( mitk::SliceNavigationController::Sagittal ); mitkWidget3->GetSliceNavigationController()->SetDefaultViewDirection( mitk::SliceNavigationController::Frontal ); mitkWidget4->GetSliceNavigationController()->SetDefaultViewDirection( mitk::SliceNavigationController::Original ); /*************************************************/ //Write Layout Names into the viewers -- hardCoded //Info for later: //int view = this->GetRenderWindow1()->GetSliceNavigationController()->GetDefaultViewDirection(); //QString layoutName; //if( view == mitk::SliceNavigationController::Axial ) // layoutName = "Axial"; //else if( view == mitk::SliceNavigationController::Sagittal ) // layoutName = "Sagittal"; //else if( view == mitk::SliceNavigationController::Frontal ) // layoutName = "Coronal"; //else if( view == mitk::SliceNavigationController::Original ) // layoutName = "Original"; //if( view >= 0 && view < 4 ) // //write LayoutName --> Viewer 3D shoudn't write the layoutName. //Render Window 1 == axial m_CornerAnnotaions[0].cornerText = vtkCornerAnnotation::New(); m_CornerAnnotaions[0].cornerText->SetText(0, "Axial"); m_CornerAnnotaions[0].cornerText->SetMaximumFontSize(12); m_CornerAnnotaions[0].textProp = vtkTextProperty::New(); m_CornerAnnotaions[0].textProp->SetColor( 1.0, 0.0, 0.0 ); m_CornerAnnotaions[0].cornerText->SetTextProperty( m_CornerAnnotaions[0].textProp ); m_CornerAnnotaions[0].ren = vtkRenderer::New(); m_CornerAnnotaions[0].ren->AddActor(m_CornerAnnotaions[0].cornerText); m_CornerAnnotaions[0].ren->InteractiveOff(); mitk::VtkLayerController::GetInstance(this->GetRenderWindow1()->GetRenderWindow())->InsertForegroundRenderer(m_CornerAnnotaions[0].ren,true); //Render Window 2 == sagittal m_CornerAnnotaions[1].cornerText = vtkCornerAnnotation::New(); m_CornerAnnotaions[1].cornerText->SetText(0, "Sagittal"); m_CornerAnnotaions[1].cornerText->SetMaximumFontSize(12); m_CornerAnnotaions[1].textProp = vtkTextProperty::New(); m_CornerAnnotaions[1].textProp->SetColor( 0.0, 1.0, 0.0 ); m_CornerAnnotaions[1].cornerText->SetTextProperty( m_CornerAnnotaions[1].textProp ); m_CornerAnnotaions[1].ren = vtkRenderer::New(); m_CornerAnnotaions[1].ren->AddActor(m_CornerAnnotaions[1].cornerText); m_CornerAnnotaions[1].ren->InteractiveOff(); mitk::VtkLayerController::GetInstance(this->GetRenderWindow2()->GetRenderWindow())->InsertForegroundRenderer(m_CornerAnnotaions[1].ren,true); //Render Window 3 == coronal m_CornerAnnotaions[2].cornerText = vtkCornerAnnotation::New(); m_CornerAnnotaions[2].cornerText->SetText(0, "Coronal"); m_CornerAnnotaions[2].cornerText->SetMaximumFontSize(12); m_CornerAnnotaions[2].textProp = vtkTextProperty::New(); m_CornerAnnotaions[2].textProp->SetColor( 0.295, 0.295, 1.0 ); m_CornerAnnotaions[2].cornerText->SetTextProperty( m_CornerAnnotaions[2].textProp ); m_CornerAnnotaions[2].ren = vtkRenderer::New(); m_CornerAnnotaions[2].ren->AddActor(m_CornerAnnotaions[2].cornerText); m_CornerAnnotaions[2].ren->InteractiveOff(); mitk::VtkLayerController::GetInstance(this->GetRenderWindow3()->GetRenderWindow())->InsertForegroundRenderer(m_CornerAnnotaions[2].ren,true); /*************************************************/ // create a slice rotator // m_SlicesRotator = mitk::SlicesRotator::New(); // @TODO next line causes sure memory leak // rotator will be created nonetheless (will be switched on and off) m_SlicesRotator = mitk::SlicesRotator::New("slices-rotator"); m_SlicesRotator->AddSliceController( mitkWidget1->GetSliceNavigationController() ); m_SlicesRotator->AddSliceController( mitkWidget2->GetSliceNavigationController() ); m_SlicesRotator->AddSliceController( mitkWidget3->GetSliceNavigationController() ); // create a slice swiveller (using the same state-machine as SlicesRotator) m_SlicesSwiveller = mitk::SlicesSwiveller::New("slices-rotator"); m_SlicesSwiveller->AddSliceController( mitkWidget1->GetSliceNavigationController() ); m_SlicesSwiveller->AddSliceController( mitkWidget2->GetSliceNavigationController() ); m_SlicesSwiveller->AddSliceController( mitkWidget3->GetSliceNavigationController() ); //connect to the "time navigation controller": send time via sliceNavigationControllers m_TimeNavigationController->ConnectGeometryTimeEvent( mitkWidget1->GetSliceNavigationController() , false); m_TimeNavigationController->ConnectGeometryTimeEvent( mitkWidget2->GetSliceNavigationController() , false); m_TimeNavigationController->ConnectGeometryTimeEvent( mitkWidget3->GetSliceNavigationController() , false); m_TimeNavigationController->ConnectGeometryTimeEvent( mitkWidget4->GetSliceNavigationController() , false); mitkWidget1->GetSliceNavigationController() ->ConnectGeometrySendEvent(mitk::BaseRenderer::GetInstance(mitkWidget4->GetRenderWindow())); //reverse connection between sliceNavigationControllers and m_TimeNavigationController mitkWidget1->GetSliceNavigationController() ->ConnectGeometryTimeEvent(m_TimeNavigationController, false); mitkWidget2->GetSliceNavigationController() ->ConnectGeometryTimeEvent(m_TimeNavigationController, false); mitkWidget3->GetSliceNavigationController() ->ConnectGeometryTimeEvent(m_TimeNavigationController, false); mitkWidget4->GetSliceNavigationController() ->ConnectGeometryTimeEvent(m_TimeNavigationController, false); m_MouseModeSwitcher = mitk::MouseModeSwitcher::New(); m_LastLeftClickPositionSupplier = mitk::CoordinateSupplier::New("navigation", NULL); mitk::GlobalInteraction::GetInstance()->AddListener( m_LastLeftClickPositionSupplier ); // setup gradient background m_GradientBackground1 = mitk::GradientBackground::New(); m_GradientBackground1->SetRenderWindow( mitkWidget1->GetRenderWindow() ); m_GradientBackground1->Disable(); m_GradientBackground2 = mitk::GradientBackground::New(); m_GradientBackground2->SetRenderWindow( mitkWidget2->GetRenderWindow() ); m_GradientBackground2->Disable(); m_GradientBackground3 = mitk::GradientBackground::New(); m_GradientBackground3->SetRenderWindow( mitkWidget3->GetRenderWindow() ); m_GradientBackground3->Disable(); m_GradientBackground4 = mitk::GradientBackground::New(); m_GradientBackground4->SetRenderWindow( mitkWidget4->GetRenderWindow() ); m_GradientBackground4->SetGradientColors(0.1,0.1,0.1,0.5,0.5,0.5); m_GradientBackground4->Enable(); // setup the department logo rendering m_LogoRendering1 = mitk::ManufacturerLogo::New(); m_LogoRendering1->SetRenderWindow( mitkWidget1->GetRenderWindow() ); m_LogoRendering1->Disable(); m_LogoRendering2 = mitk::ManufacturerLogo::New(); m_LogoRendering2->SetRenderWindow( mitkWidget2->GetRenderWindow() ); m_LogoRendering2->Disable(); m_LogoRendering3 = mitk::ManufacturerLogo::New(); m_LogoRendering3->SetRenderWindow( mitkWidget3->GetRenderWindow() ); m_LogoRendering3->Disable(); m_LogoRendering4 = mitk::ManufacturerLogo::New(); m_LogoRendering4->SetRenderWindow( mitkWidget4->GetRenderWindow() ); m_LogoRendering4->Enable(); m_RectangleRendering1 = mitk::RenderWindowFrame::New(); m_RectangleRendering1->SetRenderWindow( mitkWidget1->GetRenderWindow() ); m_RectangleRendering1->Enable(1.0,0.0,0.0); m_RectangleRendering2 = mitk::RenderWindowFrame::New(); m_RectangleRendering2->SetRenderWindow( mitkWidget2->GetRenderWindow() ); m_RectangleRendering2->Enable(0.0,1.0,0.0); m_RectangleRendering3 = mitk::RenderWindowFrame::New(); m_RectangleRendering3->SetRenderWindow( mitkWidget3->GetRenderWindow() ); m_RectangleRendering3->Enable(0.0,0.0,1.0); m_RectangleRendering4 = mitk::RenderWindowFrame::New(); m_RectangleRendering4->SetRenderWindow( mitkWidget4->GetRenderWindow() ); m_RectangleRendering4->Enable(1.0,1.0,0.0); } QmitkStdMultiWidget::~QmitkStdMultiWidget() { DisablePositionTracking(); DisableNavigationControllerEventListening(); m_TimeNavigationController->Disconnect(mitkWidget1->GetSliceNavigationController()); m_TimeNavigationController->Disconnect(mitkWidget2->GetSliceNavigationController()); m_TimeNavigationController->Disconnect(mitkWidget3->GetSliceNavigationController()); m_TimeNavigationController->Disconnect(mitkWidget4->GetSliceNavigationController()); mitk::VtkLayerController::GetInstance(this->GetRenderWindow1()->GetRenderWindow())->RemoveRenderer( m_CornerAnnotaions[0].ren ); mitk::VtkLayerController::GetInstance(this->GetRenderWindow2()->GetRenderWindow())->RemoveRenderer( m_CornerAnnotaions[1].ren ); mitk::VtkLayerController::GetInstance(this->GetRenderWindow3()->GetRenderWindow())->RemoveRenderer( m_CornerAnnotaions[2].ren ); //Delete CornerAnnotation m_CornerAnnotaions[0].cornerText->Delete(); m_CornerAnnotaions[0].textProp->Delete(); m_CornerAnnotaions[0].ren->Delete(); m_CornerAnnotaions[1].cornerText->Delete(); m_CornerAnnotaions[1].textProp->Delete(); m_CornerAnnotaions[1].ren->Delete(); m_CornerAnnotaions[2].cornerText->Delete(); m_CornerAnnotaions[2].textProp->Delete(); m_CornerAnnotaions[2].ren->Delete(); } void QmitkStdMultiWidget::RemovePlanesFromDataStorage() { if (m_PlaneNode1.IsNotNull() && m_PlaneNode2.IsNotNull() && m_PlaneNode3.IsNotNull() && m_Node.IsNotNull()) { if(m_DataStorage.IsNotNull()) { m_DataStorage->Remove(m_PlaneNode1); m_DataStorage->Remove(m_PlaneNode2); m_DataStorage->Remove(m_PlaneNode3); m_DataStorage->Remove(m_Node); } } } void QmitkStdMultiWidget::AddPlanesToDataStorage() { if (m_PlaneNode1.IsNotNull() && m_PlaneNode2.IsNotNull() && m_PlaneNode3.IsNotNull() && m_Node.IsNotNull()) { if (m_DataStorage.IsNotNull()) { m_DataStorage->Add(m_Node); m_DataStorage->Add(m_PlaneNode1, m_Node); m_DataStorage->Add(m_PlaneNode2, m_Node); m_DataStorage->Add(m_PlaneNode3, m_Node); static_cast(m_PlaneNode1->GetMapper(mitk::BaseRenderer::Standard2D))->SetDatastorageAndGeometryBaseNode(m_DataStorage, m_Node); static_cast(m_PlaneNode2->GetMapper(mitk::BaseRenderer::Standard2D))->SetDatastorageAndGeometryBaseNode(m_DataStorage, m_Node); static_cast(m_PlaneNode3->GetMapper(mitk::BaseRenderer::Standard2D))->SetDatastorageAndGeometryBaseNode(m_DataStorage, m_Node); } } } void QmitkStdMultiWidget::changeLayoutTo2DImagesUp() { SMW_INFO << "changing layout to 2D images up... " << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //Set Layout to widget this->setLayout(QmitkStdMultiWidgetLayout); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //create m_LayoutSplit and add to the mainSplit m_LayoutSplit = new QSplitter( Qt::Vertical, m_MainSplit ); m_MainSplit->addWidget( m_LayoutSplit ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //create m_SubSplit1 and m_SubSplit2 m_SubSplit1 = new QSplitter( m_LayoutSplit ); m_SubSplit2 = new QSplitter( m_LayoutSplit ); //insert Widget Container into splitter top m_SubSplit1->addWidget( mitkWidget1Container ); m_SubSplit1->addWidget( mitkWidget2Container ); m_SubSplit1->addWidget( mitkWidget3Container ); //set SplitterSize for splitter top QList splitterSize; splitterSize.push_back(1000); splitterSize.push_back(1000); splitterSize.push_back(1000); m_SubSplit1->setSizes( splitterSize ); //insert Widget Container into splitter bottom m_SubSplit2->addWidget( mitkWidget4Container ); //set SplitterSize for splitter m_LayoutSplit splitterSize.clear(); splitterSize.push_back(400); splitterSize.push_back(1000); m_LayoutSplit->setSizes( splitterSize ); //show mainSplitt m_MainSplit->show(); //show Widget if hidden if ( mitkWidget1->isHidden() ) mitkWidget1->show(); if ( mitkWidget2->isHidden() ) mitkWidget2->show(); if ( mitkWidget3->isHidden() ) mitkWidget3->show(); if ( mitkWidget4->isHidden() ) mitkWidget4->show(); //Change Layout Name m_Layout = LAYOUT_2D_IMAGES_UP; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_2D_IMAGES_UP ); mitkWidget2->LayoutDesignListChanged( LAYOUT_2D_IMAGES_UP ); mitkWidget3->LayoutDesignListChanged( LAYOUT_2D_IMAGES_UP ); mitkWidget4->LayoutDesignListChanged( LAYOUT_2D_IMAGES_UP ); //update Alle Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::changeLayoutTo2DImagesLeft() { SMW_INFO << "changing layout to 2D images left... " << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //create m_LayoutSplit and add to the mainSplit m_LayoutSplit = new QSplitter( m_MainSplit ); m_MainSplit->addWidget( m_LayoutSplit ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //create m_SubSplit1 and m_SubSplit2 m_SubSplit1 = new QSplitter( Qt::Vertical, m_LayoutSplit ); m_SubSplit2 = new QSplitter( m_LayoutSplit ); //insert Widget into the splitters m_SubSplit1->addWidget( mitkWidget1Container ); m_SubSplit1->addWidget( mitkWidget2Container ); m_SubSplit1->addWidget( mitkWidget3Container ); //set splitterSize of SubSplit1 QList splitterSize; splitterSize.push_back(1000); splitterSize.push_back(1000); splitterSize.push_back(1000); m_SubSplit1->setSizes( splitterSize ); m_SubSplit2->addWidget( mitkWidget4Container ); //set splitterSize of Layout Split splitterSize.clear(); splitterSize.push_back(400); splitterSize.push_back(1000); m_LayoutSplit->setSizes( splitterSize ); //show mainSplitt and add to Layout m_MainSplit->show(); //show Widget if hidden if ( mitkWidget1->isHidden() ) mitkWidget1->show(); if ( mitkWidget2->isHidden() ) mitkWidget2->show(); if ( mitkWidget3->isHidden() ) mitkWidget3->show(); if ( mitkWidget4->isHidden() ) mitkWidget4->show(); //update Layout Name m_Layout = LAYOUT_2D_IMAGES_LEFT; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_2D_IMAGES_LEFT ); mitkWidget2->LayoutDesignListChanged( LAYOUT_2D_IMAGES_LEFT ); mitkWidget3->LayoutDesignListChanged( LAYOUT_2D_IMAGES_LEFT ); mitkWidget4->LayoutDesignListChanged( LAYOUT_2D_IMAGES_LEFT ); //update Alle Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::changeLayoutToDefault() { SMW_INFO << "changing layout to default... " << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //create m_LayoutSplit and add to the mainSplit m_LayoutSplit = new QSplitter( Qt::Vertical, m_MainSplit ); m_MainSplit->addWidget( m_LayoutSplit ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //create m_SubSplit1 and m_SubSplit2 m_SubSplit1 = new QSplitter( m_LayoutSplit ); m_SubSplit2 = new QSplitter( m_LayoutSplit ); //insert Widget container into the splitters m_SubSplit1->addWidget( mitkWidget1Container ); m_SubSplit1->addWidget( mitkWidget2Container ); m_SubSplit2->addWidget( mitkWidget3Container ); m_SubSplit2->addWidget( mitkWidget4Container ); //set splitter Size QList splitterSize; splitterSize.push_back(1000); splitterSize.push_back(1000); m_SubSplit1->setSizes( splitterSize ); m_SubSplit2->setSizes( splitterSize ); m_LayoutSplit->setSizes( splitterSize ); //show mainSplitt and add to Layout m_MainSplit->show(); //show Widget if hidden if ( mitkWidget1->isHidden() ) mitkWidget1->show(); if ( mitkWidget2->isHidden() ) mitkWidget2->show(); if ( mitkWidget3->isHidden() ) mitkWidget3->show(); if ( mitkWidget4->isHidden() ) mitkWidget4->show(); m_Layout = LAYOUT_DEFAULT; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_DEFAULT ); mitkWidget2->LayoutDesignListChanged( LAYOUT_DEFAULT ); mitkWidget3->LayoutDesignListChanged( LAYOUT_DEFAULT ); mitkWidget4->LayoutDesignListChanged( LAYOUT_DEFAULT ); //update Alle Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::changeLayoutToBig3D() { SMW_INFO << "changing layout to big 3D ..." << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //add widget Splitter to main Splitter m_MainSplit->addWidget( mitkWidget4Container ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //show mainSplitt and add to Layout m_MainSplit->show(); //show/hide Widgets mitkWidget1->hide(); mitkWidget2->hide(); mitkWidget3->hide(); if ( mitkWidget4->isHidden() ) mitkWidget4->show(); m_Layout = LAYOUT_BIG_3D; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_BIG_3D ); mitkWidget2->LayoutDesignListChanged( LAYOUT_BIG_3D ); mitkWidget3->LayoutDesignListChanged( LAYOUT_BIG_3D ); mitkWidget4->LayoutDesignListChanged( LAYOUT_BIG_3D ); //update Alle Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::changeLayoutToWidget1() { SMW_INFO << "changing layout to big Widget1 ..." << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //add widget Splitter to main Splitter m_MainSplit->addWidget( mitkWidget1Container ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //show mainSplitt and add to Layout m_MainSplit->show(); //show/hide Widgets if ( mitkWidget1->isHidden() ) mitkWidget1->show(); mitkWidget2->hide(); mitkWidget3->hide(); mitkWidget4->hide(); m_Layout = LAYOUT_WIDGET1; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_WIDGET1 ); mitkWidget2->LayoutDesignListChanged( LAYOUT_WIDGET1 ); mitkWidget3->LayoutDesignListChanged( LAYOUT_WIDGET1 ); mitkWidget4->LayoutDesignListChanged( LAYOUT_WIDGET1 ); //update Alle Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::changeLayoutToWidget2() { SMW_INFO << "changing layout to big Widget2 ..." << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //add widget Splitter to main Splitter m_MainSplit->addWidget( mitkWidget2Container ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //show mainSplitt and add to Layout m_MainSplit->show(); //show/hide Widgets mitkWidget1->hide(); if ( mitkWidget2->isHidden() ) mitkWidget2->show(); mitkWidget3->hide(); mitkWidget4->hide(); m_Layout = LAYOUT_WIDGET2; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_WIDGET2 ); mitkWidget2->LayoutDesignListChanged( LAYOUT_WIDGET2 ); mitkWidget3->LayoutDesignListChanged( LAYOUT_WIDGET2 ); mitkWidget4->LayoutDesignListChanged( LAYOUT_WIDGET2 ); //update Alle Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::changeLayoutToWidget3() { SMW_INFO << "changing layout to big Widget3 ..." << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //add widget Splitter to main Splitter m_MainSplit->addWidget( mitkWidget3Container ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //show mainSplitt and add to Layout m_MainSplit->show(); //show/hide Widgets mitkWidget1->hide(); mitkWidget2->hide(); if ( mitkWidget3->isHidden() ) mitkWidget3->show(); mitkWidget4->hide(); m_Layout = LAYOUT_WIDGET3; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_WIDGET3 ); mitkWidget2->LayoutDesignListChanged( LAYOUT_WIDGET3 ); mitkWidget3->LayoutDesignListChanged( LAYOUT_WIDGET3 ); mitkWidget4->LayoutDesignListChanged( LAYOUT_WIDGET3 ); //update Alle Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::changeLayoutToRowWidget3And4() { SMW_INFO << "changing layout to Widget3 and 4 in a Row..." << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //create m_LayoutSplit and add to the mainSplit m_LayoutSplit = new QSplitter( Qt::Vertical, m_MainSplit ); m_MainSplit->addWidget( m_LayoutSplit ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //add Widgets to splitter m_LayoutSplit->addWidget( mitkWidget3Container ); m_LayoutSplit->addWidget( mitkWidget4Container ); //set Splitter Size QList splitterSize; splitterSize.push_back(1000); splitterSize.push_back(1000); m_LayoutSplit->setSizes( splitterSize ); //show mainSplitt and add to Layout m_MainSplit->show(); //show/hide Widgets mitkWidget1->hide(); mitkWidget2->hide(); if ( mitkWidget3->isHidden() ) mitkWidget3->show(); if ( mitkWidget4->isHidden() ) mitkWidget4->show(); m_Layout = LAYOUT_ROW_WIDGET_3_AND_4; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_ROW_WIDGET_3_AND_4 ); mitkWidget2->LayoutDesignListChanged( LAYOUT_ROW_WIDGET_3_AND_4 ); mitkWidget3->LayoutDesignListChanged( LAYOUT_ROW_WIDGET_3_AND_4 ); mitkWidget4->LayoutDesignListChanged( LAYOUT_ROW_WIDGET_3_AND_4 ); //update Alle Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::changeLayoutToColumnWidget3And4() { SMW_INFO << "changing layout to Widget3 and 4 in one Column..." << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //create m_LayoutSplit and add to the mainSplit m_LayoutSplit = new QSplitter( m_MainSplit ); m_MainSplit->addWidget( m_LayoutSplit ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //add Widgets to splitter m_LayoutSplit->addWidget( mitkWidget3Container ); m_LayoutSplit->addWidget( mitkWidget4Container ); //set SplitterSize QList splitterSize; splitterSize.push_back(1000); splitterSize.push_back(1000); m_LayoutSplit->setSizes( splitterSize ); //show mainSplitt and add to Layout m_MainSplit->show(); //show/hide Widgets mitkWidget1->hide(); mitkWidget2->hide(); if ( mitkWidget3->isHidden() ) mitkWidget3->show(); if ( mitkWidget4->isHidden() ) mitkWidget4->show(); m_Layout = LAYOUT_COLUMN_WIDGET_3_AND_4; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_COLUMN_WIDGET_3_AND_4 ); mitkWidget2->LayoutDesignListChanged( LAYOUT_COLUMN_WIDGET_3_AND_4 ); mitkWidget3->LayoutDesignListChanged( LAYOUT_COLUMN_WIDGET_3_AND_4 ); mitkWidget4->LayoutDesignListChanged( LAYOUT_COLUMN_WIDGET_3_AND_4 ); //update Alle Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::changeLayoutToRowWidgetSmall3andBig4() { SMW_INFO << "changing layout to Widget3 and 4 in a Row..." << std::endl; this->changeLayoutToRowWidget3And4(); m_Layout = LAYOUT_ROW_WIDGET_SMALL3_AND_BIG4; } void QmitkStdMultiWidget::changeLayoutToSmallUpperWidget2Big3and4() { SMW_INFO << "changing layout to Widget3 and 4 in a Row..." << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //create m_LayoutSplit and add to the mainSplit m_LayoutSplit = new QSplitter( Qt::Vertical, m_MainSplit ); m_MainSplit->addWidget( m_LayoutSplit ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //create m_SubSplit1 and m_SubSplit2 m_SubSplit1 = new QSplitter( Qt::Vertical, m_LayoutSplit ); m_SubSplit2 = new QSplitter( m_LayoutSplit ); //insert Widget into the splitters m_SubSplit1->addWidget( mitkWidget2Container ); m_SubSplit2->addWidget( mitkWidget3Container ); m_SubSplit2->addWidget( mitkWidget4Container ); //set Splitter Size QList splitterSize; splitterSize.push_back(1000); splitterSize.push_back(1000); m_SubSplit2->setSizes( splitterSize ); splitterSize.clear(); splitterSize.push_back(500); splitterSize.push_back(1000); m_LayoutSplit->setSizes( splitterSize ); //show mainSplitt m_MainSplit->show(); //show Widget if hidden mitkWidget1->hide(); if ( mitkWidget2->isHidden() ) mitkWidget2->show(); if ( mitkWidget3->isHidden() ) mitkWidget3->show(); if ( mitkWidget4->isHidden() ) mitkWidget4->show(); m_Layout = LAYOUT_SMALL_UPPER_WIDGET2_BIG3_AND4; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_SMALL_UPPER_WIDGET2_BIG3_AND4 ); mitkWidget2->LayoutDesignListChanged( LAYOUT_SMALL_UPPER_WIDGET2_BIG3_AND4 ); mitkWidget3->LayoutDesignListChanged( LAYOUT_SMALL_UPPER_WIDGET2_BIG3_AND4 ); mitkWidget4->LayoutDesignListChanged( LAYOUT_SMALL_UPPER_WIDGET2_BIG3_AND4 ); //update Alle Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::changeLayoutTo2x2Dand3DWidget() { SMW_INFO << "changing layout to 2 x 2D and 3D Widget" << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //create m_LayoutSplit and add to the mainSplit m_LayoutSplit = new QSplitter( m_MainSplit ); m_MainSplit->addWidget( m_LayoutSplit ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //create m_SubSplit1 and m_SubSplit2 m_SubSplit1 = new QSplitter( Qt::Vertical, m_LayoutSplit ); m_SubSplit2 = new QSplitter( m_LayoutSplit ); //add Widgets to splitter m_SubSplit1->addWidget( mitkWidget1Container ); m_SubSplit1->addWidget( mitkWidget2Container ); m_SubSplit2->addWidget( mitkWidget4Container ); //set Splitter Size QList splitterSize; splitterSize.push_back(1000); splitterSize.push_back(1000); m_SubSplit1->setSizes( splitterSize ); m_LayoutSplit->setSizes( splitterSize ); //show mainSplitt and add to Layout m_MainSplit->show(); //show/hide Widgets if ( mitkWidget1->isHidden() ) mitkWidget1->show(); if ( mitkWidget2->isHidden() ) mitkWidget2->show(); mitkWidget3->hide(); if ( mitkWidget4->isHidden() ) mitkWidget4->show(); m_Layout = LAYOUT_2X_2D_AND_3D_WIDGET; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_2X_2D_AND_3D_WIDGET ); mitkWidget2->LayoutDesignListChanged( LAYOUT_2X_2D_AND_3D_WIDGET ); mitkWidget3->LayoutDesignListChanged( LAYOUT_2X_2D_AND_3D_WIDGET ); mitkWidget4->LayoutDesignListChanged( LAYOUT_2X_2D_AND_3D_WIDGET ); //update Alle Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::changeLayoutToLeft2Dand3DRight2D() { SMW_INFO << "changing layout to 2D and 3D left, 2D right Widget" << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //create m_LayoutSplit and add to the mainSplit m_LayoutSplit = new QSplitter( m_MainSplit ); m_MainSplit->addWidget( m_LayoutSplit ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //create m_SubSplit1 and m_SubSplit2 m_SubSplit1 = new QSplitter( Qt::Vertical, m_LayoutSplit ); m_SubSplit2 = new QSplitter( m_LayoutSplit ); //add Widgets to splitter m_SubSplit1->addWidget( mitkWidget1Container ); m_SubSplit1->addWidget( mitkWidget4Container ); m_SubSplit2->addWidget( mitkWidget2Container ); //set Splitter Size QList splitterSize; splitterSize.push_back(1000); splitterSize.push_back(1000); m_SubSplit1->setSizes( splitterSize ); m_LayoutSplit->setSizes( splitterSize ); //show mainSplitt and add to Layout m_MainSplit->show(); //show/hide Widgets if ( mitkWidget1->isHidden() ) mitkWidget1->show(); if ( mitkWidget2->isHidden() ) mitkWidget2->show(); mitkWidget3->hide(); if ( mitkWidget4->isHidden() ) mitkWidget4->show(); m_Layout = LAYOUT_2D_AND_3D_LEFT_2D_RIGHT_WIDGET; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_2D_AND_3D_LEFT_2D_RIGHT_WIDGET ); mitkWidget2->LayoutDesignListChanged( LAYOUT_2D_AND_3D_LEFT_2D_RIGHT_WIDGET ); mitkWidget3->LayoutDesignListChanged( LAYOUT_2D_AND_3D_LEFT_2D_RIGHT_WIDGET ); mitkWidget4->LayoutDesignListChanged( LAYOUT_2D_AND_3D_LEFT_2D_RIGHT_WIDGET ); //update Alle Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::changeLayoutTo2DUpAnd3DDown() { SMW_INFO << "changing layout to 2D up and 3D down" << std::endl; //Hide all Menu Widgets this->HideAllWidgetToolbars(); delete QmitkStdMultiWidgetLayout ; //create Main Layout QmitkStdMultiWidgetLayout = new QHBoxLayout( this ); //Set Layout to widget this->setLayout(QmitkStdMultiWidgetLayout); //create main splitter m_MainSplit = new QSplitter( this ); QmitkStdMultiWidgetLayout->addWidget( m_MainSplit ); //create m_LayoutSplit and add to the mainSplit m_LayoutSplit = new QSplitter( Qt::Vertical, m_MainSplit ); m_MainSplit->addWidget( m_LayoutSplit ); //add LevelWindow Widget to mainSplitter m_MainSplit->addWidget( levelWindowWidget ); //create m_SubSplit1 and m_SubSplit2 m_SubSplit1 = new QSplitter( m_LayoutSplit ); m_SubSplit2 = new QSplitter( m_LayoutSplit ); //insert Widget Container into splitter top m_SubSplit1->addWidget( mitkWidget1Container ); //set SplitterSize for splitter top QList splitterSize; // splitterSize.push_back(1000); // splitterSize.push_back(1000); // splitterSize.push_back(1000); // m_SubSplit1->setSizes( splitterSize ); //insert Widget Container into splitter bottom m_SubSplit2->addWidget( mitkWidget4Container ); //set SplitterSize for splitter m_LayoutSplit splitterSize.clear(); splitterSize.push_back(700); splitterSize.push_back(700); m_LayoutSplit->setSizes( splitterSize ); //show mainSplitt m_MainSplit->show(); //show/hide Widgets if ( mitkWidget1->isHidden() ) mitkWidget1->show(); mitkWidget2->hide(); mitkWidget3->hide(); if ( mitkWidget4->isHidden() ) mitkWidget4->show(); m_Layout = LAYOUT_2D_UP_AND_3D_DOWN; //update Layout Design List mitkWidget1->LayoutDesignListChanged( LAYOUT_2D_UP_AND_3D_DOWN ); mitkWidget2->LayoutDesignListChanged( LAYOUT_2D_UP_AND_3D_DOWN ); mitkWidget3->LayoutDesignListChanged( LAYOUT_2D_UP_AND_3D_DOWN ); mitkWidget4->LayoutDesignListChanged( LAYOUT_2D_UP_AND_3D_DOWN ); //update all Widgets this->UpdateAllWidgets(); } void QmitkStdMultiWidget::SetDataStorage( mitk::DataStorage* ds ) { mitk::BaseRenderer::GetInstance(mitkWidget1->GetRenderWindow())->SetDataStorage(ds); mitk::BaseRenderer::GetInstance(mitkWidget2->GetRenderWindow())->SetDataStorage(ds); mitk::BaseRenderer::GetInstance(mitkWidget3->GetRenderWindow())->SetDataStorage(ds); mitk::BaseRenderer::GetInstance(mitkWidget4->GetRenderWindow())->SetDataStorage(ds); m_DataStorage = ds; } void QmitkStdMultiWidget::Fit() { vtkRenderer * vtkrenderer; mitk::BaseRenderer::GetInstance(mitkWidget1->GetRenderWindow())->GetDisplayGeometry()->Fit(); mitk::BaseRenderer::GetInstance(mitkWidget2->GetRenderWindow())->GetDisplayGeometry()->Fit(); mitk::BaseRenderer::GetInstance(mitkWidget3->GetRenderWindow())->GetDisplayGeometry()->Fit(); mitk::BaseRenderer::GetInstance(mitkWidget4->GetRenderWindow())->GetDisplayGeometry()->Fit(); int w = vtkObject::GetGlobalWarningDisplay(); vtkObject::GlobalWarningDisplayOff(); vtkrenderer = mitk::BaseRenderer::GetInstance(mitkWidget1->GetRenderWindow())->GetVtkRenderer(); if ( vtkrenderer!= NULL ) vtkrenderer->ResetCamera(); vtkrenderer = mitk::BaseRenderer::GetInstance(mitkWidget2->GetRenderWindow())->GetVtkRenderer(); if ( vtkrenderer!= NULL ) vtkrenderer->ResetCamera(); vtkrenderer = mitk::BaseRenderer::GetInstance(mitkWidget3->GetRenderWindow())->GetVtkRenderer(); if ( vtkrenderer!= NULL ) vtkrenderer->ResetCamera(); vtkrenderer = mitk::BaseRenderer::GetInstance(mitkWidget4->GetRenderWindow())->GetVtkRenderer(); if ( vtkrenderer!= NULL ) vtkrenderer->ResetCamera(); vtkObject::SetGlobalWarningDisplay(w); } void QmitkStdMultiWidget::InitPositionTracking() { //PoinSetNode for MouseOrientation m_PositionTrackerNode = mitk::DataNode::New(); m_PositionTrackerNode->SetProperty("name", mitk::StringProperty::New("Mouse Position")); m_PositionTrackerNode->SetData( mitk::PointSet::New() ); m_PositionTrackerNode->SetColor(1.0,0.33,0.0); m_PositionTrackerNode->SetProperty("layer", mitk::IntProperty::New(1001)); m_PositionTrackerNode->SetVisibility(true); m_PositionTrackerNode->SetProperty("inputdevice", mitk::BoolProperty::New(true) ); m_PositionTrackerNode->SetProperty("BaseRendererMapperID", mitk::IntProperty::New(0) );//point position 2D mouse m_PositionTrackerNode->SetProperty("baserenderer", mitk::StringProperty::New("N/A")); } void QmitkStdMultiWidget::AddDisplayPlaneSubTree() { // add the displayed planes of the multiwidget to a node to which the subtree // @a planesSubTree points ... float white[3] = {1.0f,1.0f,1.0f}; mitk::Geometry2DDataMapper2D::Pointer mapper; // ... of widget 1 m_PlaneNode1 = (mitk::BaseRenderer::GetInstance(mitkWidget1->GetRenderWindow()))->GetCurrentWorldGeometry2DNode(); m_PlaneNode1->SetColor(white, mitk::BaseRenderer::GetInstance(mitkWidget4->GetRenderWindow())); m_PlaneNode1->SetProperty("visible", mitk::BoolProperty::New(true)); m_PlaneNode1->SetProperty("name", mitk::StringProperty::New("widget1Plane")); m_PlaneNode1->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_PlaneNode1->SetProperty("helper object", mitk::BoolProperty::New(true)); mapper = mitk::Geometry2DDataMapper2D::New(); m_PlaneNode1->SetMapper(mitk::BaseRenderer::Standard2D, mapper); // ... of widget 2 m_PlaneNode2 =( mitk::BaseRenderer::GetInstance(mitkWidget2->GetRenderWindow()))->GetCurrentWorldGeometry2DNode(); m_PlaneNode2->SetColor(white, mitk::BaseRenderer::GetInstance(mitkWidget4->GetRenderWindow())); m_PlaneNode2->SetProperty("visible", mitk::BoolProperty::New(true)); m_PlaneNode2->SetProperty("name", mitk::StringProperty::New("widget2Plane")); m_PlaneNode2->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_PlaneNode2->SetProperty("helper object", mitk::BoolProperty::New(true)); mapper = mitk::Geometry2DDataMapper2D::New(); m_PlaneNode2->SetMapper(mitk::BaseRenderer::Standard2D, mapper); // ... of widget 3 m_PlaneNode3 = (mitk::BaseRenderer::GetInstance(mitkWidget3->GetRenderWindow()))->GetCurrentWorldGeometry2DNode(); m_PlaneNode3->SetColor(white, mitk::BaseRenderer::GetInstance(mitkWidget4->GetRenderWindow())); m_PlaneNode3->SetProperty("visible", mitk::BoolProperty::New(true)); m_PlaneNode3->SetProperty("name", mitk::StringProperty::New("widget3Plane")); m_PlaneNode3->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_PlaneNode3->SetProperty("helper object", mitk::BoolProperty::New(true)); mapper = mitk::Geometry2DDataMapper2D::New(); m_PlaneNode3->SetMapper(mitk::BaseRenderer::Standard2D, mapper); m_Node = mitk::DataNode::New(); m_Node->SetProperty("name", mitk::StringProperty::New("Widgets")); m_Node->SetProperty("helper object", mitk::BoolProperty::New(true)); } mitk::SliceNavigationController* QmitkStdMultiWidget::GetTimeNavigationController() { return m_TimeNavigationController; } void QmitkStdMultiWidget::EnableStandardLevelWindow() { levelWindowWidget->disconnect(this); levelWindowWidget->SetDataStorage(mitk::BaseRenderer::GetInstance(mitkWidget1->GetRenderWindow())->GetDataStorage()); levelWindowWidget->show(); } void QmitkStdMultiWidget::DisableStandardLevelWindow() { levelWindowWidget->disconnect(this); levelWindowWidget->hide(); } // CAUTION: Legacy code for enabling Qt-signal-controlled view initialization. // Use RenderingManager::InitializeViews() instead. bool QmitkStdMultiWidget::InitializeStandardViews( const mitk::Geometry3D * geometry ) { return m_RenderingManager->InitializeViews( geometry ); } void QmitkStdMultiWidget::RequestUpdate() { m_RenderingManager->RequestUpdate(mitkWidget1->GetRenderWindow()); m_RenderingManager->RequestUpdate(mitkWidget2->GetRenderWindow()); m_RenderingManager->RequestUpdate(mitkWidget3->GetRenderWindow()); m_RenderingManager->RequestUpdate(mitkWidget4->GetRenderWindow()); } void QmitkStdMultiWidget::ForceImmediateUpdate() { m_RenderingManager->ForceImmediateUpdate(mitkWidget1->GetRenderWindow()); m_RenderingManager->ForceImmediateUpdate(mitkWidget2->GetRenderWindow()); m_RenderingManager->ForceImmediateUpdate(mitkWidget3->GetRenderWindow()); m_RenderingManager->ForceImmediateUpdate(mitkWidget4->GetRenderWindow()); } void QmitkStdMultiWidget::wheelEvent( QWheelEvent * e ) { emit WheelMoved( e ); } void QmitkStdMultiWidget::mousePressEvent(QMouseEvent * e) { if (e->button() == Qt::LeftButton) { mitk::Point3D pointValue = this->GetLastLeftClickPosition(); emit LeftMouseClicked(pointValue); } } void QmitkStdMultiWidget::moveEvent( QMoveEvent* e ) { QWidget::moveEvent( e ); // it is necessary to readjust the position of the overlays as the StdMultiWidget has moved // unfortunately it's not done by QmitkRenderWindow::moveEvent -> must be done here emit Moved(); } void QmitkStdMultiWidget::leaveEvent ( QEvent * /*e*/ ) { //set cursor back to initial state m_SlicesRotator->ResetMouseCursor(); } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow1() const { return mitkWidget1; } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow2() const { return mitkWidget2; } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow3() const { return mitkWidget3; } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow4() const { return mitkWidget4; } const mitk::Point3D& QmitkStdMultiWidget::GetLastLeftClickPosition() const { return m_LastLeftClickPositionSupplier->GetCurrentPoint(); } const mitk::Point3D QmitkStdMultiWidget::GetCrossPosition() const { const mitk::PlaneGeometry *plane1 = mitkWidget1->GetSliceNavigationController()->GetCurrentPlaneGeometry(); const mitk::PlaneGeometry *plane2 = mitkWidget2->GetSliceNavigationController()->GetCurrentPlaneGeometry(); const mitk::PlaneGeometry *plane3 = mitkWidget3->GetSliceNavigationController()->GetCurrentPlaneGeometry(); mitk::Line3D line; if ( (plane1 != NULL) && (plane2 != NULL) && (plane1->IntersectionLine( plane2, line )) ) { mitk::Point3D point; if ( (plane3 != NULL) && (plane3->IntersectionPoint( line, point )) ) { return point; } } return m_LastLeftClickPositionSupplier->GetCurrentPoint(); } void QmitkStdMultiWidget::EnablePositionTracking() { if (!m_PositionTracker) { m_PositionTracker = mitk::PositionTracker::New("PositionTracker", NULL); } mitk::GlobalInteraction* globalInteraction = mitk::GlobalInteraction::GetInstance(); if (globalInteraction) { if(m_DataStorage.IsNotNull()) m_DataStorage->Add(m_PositionTrackerNode); globalInteraction->AddListener(m_PositionTracker); } } void QmitkStdMultiWidget::DisablePositionTracking() { mitk::GlobalInteraction* globalInteraction = mitk::GlobalInteraction::GetInstance(); if(globalInteraction) { if (m_DataStorage.IsNotNull()) m_DataStorage->Remove(m_PositionTrackerNode); globalInteraction->RemoveListener(m_PositionTracker); } } void QmitkStdMultiWidget::EnsureDisplayContainsPoint( mitk::DisplayGeometry* displayGeometry, const mitk::Point3D& p) { mitk::Point2D pointOnPlane; displayGeometry->Map( p, pointOnPlane ); // point minus origin < width or height ==> outside ? mitk::Vector2D pointOnRenderWindow_MM; pointOnRenderWindow_MM = pointOnPlane.GetVectorFromOrigin() - displayGeometry->GetOriginInMM(); mitk::Vector2D sizeOfDisplay( displayGeometry->GetSizeInMM() ); if ( sizeOfDisplay[0] < pointOnRenderWindow_MM[0] || 0 > pointOnRenderWindow_MM[0] || sizeOfDisplay[1] < pointOnRenderWindow_MM[1] || 0 > pointOnRenderWindow_MM[1] ) { // point is not visible -> move geometry mitk::Vector2D offset( (pointOnRenderWindow_MM - sizeOfDisplay / 2.0) / displayGeometry->GetScaleFactorMMPerDisplayUnit() ); displayGeometry->MoveBy( offset ); } } void QmitkStdMultiWidget::MoveCrossToPosition(const mitk::Point3D& newPosition) { // create a PositionEvent with the given position and // tell the slice navigation controllers to move there mitk::Point2D p2d; mitk::PositionEvent event( mitk::BaseRenderer::GetInstance(mitkWidget1->GetRenderWindow()), 0, 0, 0, mitk::Key_unknown, p2d, newPosition ); mitk::StateEvent stateEvent(mitk::EIDLEFTMOUSEBTN, &event); mitk::StateEvent stateEvent2(mitk::EIDLEFTMOUSERELEASE, &event); switch ( m_PlaneMode ) { default: case PLANE_MODE_SLICING: mitkWidget1->GetSliceNavigationController()->HandleEvent( &stateEvent ); mitkWidget2->GetSliceNavigationController()->HandleEvent( &stateEvent ); mitkWidget3->GetSliceNavigationController()->HandleEvent( &stateEvent ); // just in case SNCs will develop something that depends on the mouse // button being released again mitkWidget1->GetSliceNavigationController()->HandleEvent( &stateEvent2 ); mitkWidget2->GetSliceNavigationController()->HandleEvent( &stateEvent2 ); mitkWidget3->GetSliceNavigationController()->HandleEvent( &stateEvent2 ); break; case PLANE_MODE_ROTATION: m_SlicesRotator->HandleEvent( &stateEvent ); // just in case SNCs will develop something that depends on the mouse // button being released again m_SlicesRotator->HandleEvent( &stateEvent2 ); break; case PLANE_MODE_SWIVEL: m_SlicesSwiveller->HandleEvent( &stateEvent ); // just in case SNCs will develop something that depends on the mouse // button being released again m_SlicesSwiveller->HandleEvent( &stateEvent2 ); break; } // determine if cross is now out of display // if so, move the display window EnsureDisplayContainsPoint( mitk::BaseRenderer::GetInstance(mitkWidget1->GetRenderWindow()) ->GetDisplayGeometry(), newPosition ); EnsureDisplayContainsPoint( mitk::BaseRenderer::GetInstance(mitkWidget2->GetRenderWindow()) ->GetDisplayGeometry(), newPosition ); EnsureDisplayContainsPoint( mitk::BaseRenderer::GetInstance(mitkWidget3->GetRenderWindow()) ->GetDisplayGeometry(), newPosition ); // update displays m_RenderingManager->RequestUpdateAll(); } void QmitkStdMultiWidget::HandleCrosshairPositionEvent() { if(!m_PendingCrosshairPositionEvent) { m_PendingCrosshairPositionEvent=true; QTimer::singleShot(0,this,SLOT( HandleCrosshairPositionEventDelayed() ) ); } } void QmitkStdMultiWidget::HandleCrosshairPositionEventDelayed() { m_PendingCrosshairPositionEvent = false; // find image with highest layer mitk::Point3D crosshairPos = this->GetCrossPosition(); mitk::TNodePredicateDataType::Pointer isImageData = mitk::TNodePredicateDataType::New(); mitk::DataStorage::SetOfObjects::ConstPointer nodes = this->m_DataStorage->GetSubset(isImageData).GetPointer(); std::string statusText; mitk::Image::Pointer image; int maxlayer = -32768; mitk::BaseRenderer* baseRenderer = this->mitkWidget1->GetSliceNavigationController()->GetRenderer(); // find image with largest layer, that is the image shown on top in the render window for (unsigned int x = 0; x < nodes->size(); x++) { if ( (nodes->at(x)->GetData()->GetGeometry() != NULL) && nodes->at(x)->GetData()->GetGeometry()->IsInside(crosshairPos) ) { int layer = 0; if(!(nodes->at(x)->GetIntProperty("layer", layer))) continue; if(layer > maxlayer) { if( static_cast(nodes->at(x))->IsVisible( baseRenderer ) ) { image = dynamic_cast(nodes->at(x)->GetData()); maxlayer = layer; } } } } std::stringstream stream; mitk::Index3D p; int timestep = baseRenderer->GetTimeStep(); if(image.IsNotNull() && (image->GetTimeSteps() > timestep )) { image->GetGeometry()->WorldToIndex(crosshairPos, p); stream.precision(2); stream<<"Position: <" << std::fixed < mm"; stream<<"; Index: <"< "; mitk::ScalarType pixelValue = image->GetPixelValueByIndex(p, timestep); if (fabs(pixelValue)>1000000 || fabs(pixelValue) < 0.01) { stream<<"; Time: " << baseRenderer->GetTime() << " ms; Pixelvalue: "<< std::scientific<< pixelValue <<" "; } else { stream<<"; Time: " << baseRenderer->GetTime() << " ms; Pixelvalue: "<< pixelValue <<" "; } } else { stream << "No image information at this position!"; } statusText = stream.str(); mitk::StatusBar::GetInstance()->DisplayGreyValueText(statusText.c_str()); } void QmitkStdMultiWidget::EnableNavigationControllerEventListening() { // Let NavigationControllers listen to GlobalInteraction mitk::GlobalInteraction *gi = mitk::GlobalInteraction::GetInstance(); // Listen for SliceNavigationController mitkWidget1->GetSliceNavigationController()->crosshairPositionEvent.AddListener( mitk::MessageDelegate( this, &QmitkStdMultiWidget::HandleCrosshairPositionEvent ) ); mitkWidget2->GetSliceNavigationController()->crosshairPositionEvent.AddListener( mitk::MessageDelegate( this, &QmitkStdMultiWidget::HandleCrosshairPositionEvent ) ); mitkWidget3->GetSliceNavigationController()->crosshairPositionEvent.AddListener( mitk::MessageDelegate( this, &QmitkStdMultiWidget::HandleCrosshairPositionEvent ) ); switch ( m_PlaneMode ) { default: case PLANE_MODE_SLICING: gi->AddListener( mitkWidget1->GetSliceNavigationController() ); gi->AddListener( mitkWidget2->GetSliceNavigationController() ); gi->AddListener( mitkWidget3->GetSliceNavigationController() ); gi->AddListener( mitkWidget4->GetSliceNavigationController() ); break; case PLANE_MODE_ROTATION: gi->AddListener( m_SlicesRotator ); break; case PLANE_MODE_SWIVEL: gi->AddListener( m_SlicesSwiveller ); break; } gi->AddListener( m_TimeNavigationController ); m_CrosshairNavigationEnabled = true; } void QmitkStdMultiWidget::DisableNavigationControllerEventListening() { // Do not let NavigationControllers listen to GlobalInteraction mitk::GlobalInteraction *gi = mitk::GlobalInteraction::GetInstance(); switch ( m_PlaneMode ) { default: case PLANE_MODE_SLICING: gi->RemoveListener( mitkWidget1->GetSliceNavigationController() ); gi->RemoveListener( mitkWidget2->GetSliceNavigationController() ); gi->RemoveListener( mitkWidget3->GetSliceNavigationController() ); gi->RemoveListener( mitkWidget4->GetSliceNavigationController() ); break; case PLANE_MODE_ROTATION: m_SlicesRotator->ResetMouseCursor(); gi->RemoveListener( m_SlicesRotator ); break; case PLANE_MODE_SWIVEL: m_SlicesSwiveller->ResetMouseCursor(); gi->RemoveListener( m_SlicesSwiveller ); break; } gi->RemoveListener( m_TimeNavigationController ); m_CrosshairNavigationEnabled = false; } int QmitkStdMultiWidget::GetLayout() const { return m_Layout; } bool QmitkStdMultiWidget::GetGradientBackgroundFlag() const { return m_GradientBackgroundFlag; } void QmitkStdMultiWidget::EnableGradientBackground() { // gradient background is by default only in widget 4, otherwise // interferences between 2D rendering and VTK rendering may occur. //m_GradientBackground1->Enable(); //m_GradientBackground2->Enable(); //m_GradientBackground3->Enable(); m_GradientBackground4->Enable(); m_GradientBackgroundFlag = true; } void QmitkStdMultiWidget::DisableGradientBackground() { //m_GradientBackground1->Disable(); //m_GradientBackground2->Disable(); //m_GradientBackground3->Disable(); m_GradientBackground4->Disable(); m_GradientBackgroundFlag = false; } void QmitkStdMultiWidget::EnableDepartmentLogo() { m_LogoRendering4->Enable(); } void QmitkStdMultiWidget::DisableDepartmentLogo() { m_LogoRendering4->Disable(); } bool QmitkStdMultiWidget::IsDepartmentLogoEnabled() const { return m_LogoRendering4->IsEnabled(); } bool QmitkStdMultiWidget::IsCrosshairNavigationEnabled() const { return m_CrosshairNavigationEnabled; } mitk::SlicesRotator * QmitkStdMultiWidget::GetSlicesRotator() const { return m_SlicesRotator; } mitk::SlicesSwiveller * QmitkStdMultiWidget::GetSlicesSwiveller() const { return m_SlicesSwiveller; } void QmitkStdMultiWidget::SetWidgetPlaneVisibility(const char* widgetName, bool visible, mitk::BaseRenderer *renderer) { if (m_DataStorage.IsNotNull()) { mitk::DataNode* n = m_DataStorage->GetNamedNode(widgetName); if (n != NULL) n->SetVisibility(visible, renderer); } } void QmitkStdMultiWidget::SetWidgetPlanesVisibility(bool visible, mitk::BaseRenderer *renderer) { SetWidgetPlaneVisibility("widget1Plane", visible, renderer); SetWidgetPlaneVisibility("widget2Plane", visible, renderer); SetWidgetPlaneVisibility("widget3Plane", visible, renderer); m_RenderingManager->RequestUpdateAll(); } void QmitkStdMultiWidget::SetWidgetPlanesLocked(bool locked) { //do your job and lock or unlock slices. GetRenderWindow1()->GetSliceNavigationController()->SetSliceLocked(locked); GetRenderWindow2()->GetSliceNavigationController()->SetSliceLocked(locked); GetRenderWindow3()->GetSliceNavigationController()->SetSliceLocked(locked); } void QmitkStdMultiWidget::SetWidgetPlanesRotationLocked(bool locked) { //do your job and lock or unlock slices. GetRenderWindow1()->GetSliceNavigationController()->SetSliceRotationLocked(locked); GetRenderWindow2()->GetSliceNavigationController()->SetSliceRotationLocked(locked); GetRenderWindow3()->GetSliceNavigationController()->SetSliceRotationLocked(locked); } void QmitkStdMultiWidget::SetWidgetPlanesRotationLinked( bool link ) { m_SlicesRotator->SetLinkPlanes( link ); m_SlicesSwiveller->SetLinkPlanes( link ); emit WidgetPlanesRotationLinked( link ); } void QmitkStdMultiWidget::SetWidgetPlaneMode( int userMode ) { MITK_DEBUG << "Changing crosshair mode to " << userMode; // first of all reset left mouse button interaction to default if PACS interaction style is active m_MouseModeSwitcher->SelectMouseMode( mitk::MouseModeSwitcher::MousePointer ); emit WidgetNotifyNewCrossHairMode( userMode ); int mode = m_PlaneMode; bool link = false; // Convert user interface mode to actual mode { switch(userMode) { case 0: mode = PLANE_MODE_SLICING; link = false; break; case 1: mode = PLANE_MODE_ROTATION; link = false; break; case 2: mode = PLANE_MODE_ROTATION; link = true; break; case 3: mode = PLANE_MODE_SWIVEL; link = false; break; } } // Slice rotation linked m_SlicesRotator->SetLinkPlanes( link ); m_SlicesSwiveller->SetLinkPlanes( link ); // Do nothing if mode didn't change if ( m_PlaneMode == mode ) { return; } mitk::GlobalInteraction *gi = mitk::GlobalInteraction::GetInstance(); // Remove listeners of previous mode switch ( m_PlaneMode ) { default: case PLANE_MODE_SLICING: // Notify MainTemplate GUI that this mode has been deselected emit WidgetPlaneModeSlicing( false ); gi->RemoveListener( mitkWidget1->GetSliceNavigationController() ); gi->RemoveListener( mitkWidget2->GetSliceNavigationController() ); gi->RemoveListener( mitkWidget3->GetSliceNavigationController() ); gi->RemoveListener( mitkWidget4->GetSliceNavigationController() ); break; case PLANE_MODE_ROTATION: // Notify MainTemplate GUI that this mode has been deselected emit WidgetPlaneModeRotation( false ); m_SlicesRotator->ResetMouseCursor(); gi->RemoveListener( m_SlicesRotator ); break; case PLANE_MODE_SWIVEL: // Notify MainTemplate GUI that this mode has been deselected emit WidgetPlaneModeSwivel( false ); m_SlicesSwiveller->ResetMouseCursor(); gi->RemoveListener( m_SlicesSwiveller ); break; } // Set new mode and add corresponding listener to GlobalInteraction m_PlaneMode = mode; switch ( m_PlaneMode ) { default: case PLANE_MODE_SLICING: // Notify MainTemplate GUI that this mode has been selected emit WidgetPlaneModeSlicing( true ); // Add listeners gi->AddListener( mitkWidget1->GetSliceNavigationController() ); gi->AddListener( mitkWidget2->GetSliceNavigationController() ); gi->AddListener( mitkWidget3->GetSliceNavigationController() ); gi->AddListener( mitkWidget4->GetSliceNavigationController() ); m_RenderingManager->InitializeViews(); break; case PLANE_MODE_ROTATION: // Notify MainTemplate GUI that this mode has been selected emit WidgetPlaneModeRotation( true ); // Add listener gi->AddListener( m_SlicesRotator ); break; case PLANE_MODE_SWIVEL: // Notify MainTemplate GUI that this mode has been selected emit WidgetPlaneModeSwivel( true ); // Add listener gi->AddListener( m_SlicesSwiveller ); break; } // Notify MainTemplate GUI that mode has changed emit WidgetPlaneModeChange(m_PlaneMode); } void QmitkStdMultiWidget::SetGradientBackgroundColors( const mitk::Color & upper, const mitk::Color & lower ) { m_GradientBackground1->SetGradientColors(upper[0], upper[1], upper[2], lower[0], lower[1], lower[2]); m_GradientBackground2->SetGradientColors(upper[0], upper[1], upper[2], lower[0], lower[1], lower[2]); m_GradientBackground3->SetGradientColors(upper[0], upper[1], upper[2], lower[0], lower[1], lower[2]); m_GradientBackground4->SetGradientColors(upper[0], upper[1], upper[2], lower[0], lower[1], lower[2]); m_GradientBackgroundFlag = true; } void QmitkStdMultiWidget::SetDepartmentLogoPath( const char * path ) { m_LogoRendering1->SetLogoSource(path); m_LogoRendering2->SetLogoSource(path); m_LogoRendering3->SetLogoSource(path); m_LogoRendering4->SetLogoSource(path); } void QmitkStdMultiWidget::SetWidgetPlaneModeToSlicing( bool activate ) { if ( activate ) { this->SetWidgetPlaneMode( PLANE_MODE_SLICING ); } } void QmitkStdMultiWidget::SetWidgetPlaneModeToRotation( bool activate ) { if ( activate ) { this->SetWidgetPlaneMode( PLANE_MODE_ROTATION ); } } void QmitkStdMultiWidget::SetWidgetPlaneModeToSwivel( bool activate ) { if ( activate ) { this->SetWidgetPlaneMode( PLANE_MODE_SWIVEL ); } } void QmitkStdMultiWidget::OnLayoutDesignChanged( int layoutDesignIndex ) { switch( layoutDesignIndex ) { case LAYOUT_DEFAULT: { this->changeLayoutToDefault(); break; } case LAYOUT_2D_IMAGES_UP: { this->changeLayoutTo2DImagesUp(); break; } case LAYOUT_2D_IMAGES_LEFT: { this->changeLayoutTo2DImagesLeft(); break; } case LAYOUT_BIG_3D: { this->changeLayoutToBig3D(); break; } case LAYOUT_WIDGET1: { this->changeLayoutToWidget1(); break; } case LAYOUT_WIDGET2: { this->changeLayoutToWidget2(); break; } case LAYOUT_WIDGET3: { this->changeLayoutToWidget3(); break; } case LAYOUT_2X_2D_AND_3D_WIDGET: { this->changeLayoutTo2x2Dand3DWidget(); break; } case LAYOUT_ROW_WIDGET_3_AND_4: { this->changeLayoutToRowWidget3And4(); break; } case LAYOUT_COLUMN_WIDGET_3_AND_4: { this->changeLayoutToColumnWidget3And4(); break; } case LAYOUT_ROW_WIDGET_SMALL3_AND_BIG4: { this->changeLayoutToRowWidgetSmall3andBig4(); break; } case LAYOUT_SMALL_UPPER_WIDGET2_BIG3_AND4: { this->changeLayoutToSmallUpperWidget2Big3and4(); break; } case LAYOUT_2D_AND_3D_LEFT_2D_RIGHT_WIDGET: { this->changeLayoutToLeft2Dand3DRight2D(); break; } }; } void QmitkStdMultiWidget::UpdateAllWidgets() { mitkWidget1->resize( mitkWidget1Container->frameSize().width()-1, mitkWidget1Container->frameSize().height() ); mitkWidget1->resize( mitkWidget1Container->frameSize().width(), mitkWidget1Container->frameSize().height() ); mitkWidget2->resize( mitkWidget2Container->frameSize().width()-1, mitkWidget2Container->frameSize().height() ); mitkWidget2->resize( mitkWidget2Container->frameSize().width(), mitkWidget2Container->frameSize().height() ); mitkWidget3->resize( mitkWidget3Container->frameSize().width()-1, mitkWidget3Container->frameSize().height() ); mitkWidget3->resize( mitkWidget3Container->frameSize().width(), mitkWidget3Container->frameSize().height() ); mitkWidget4->resize( mitkWidget4Container->frameSize().width()-1, mitkWidget4Container->frameSize().height() ); mitkWidget4->resize( mitkWidget4Container->frameSize().width(), mitkWidget4Container->frameSize().height() ); } void QmitkStdMultiWidget::HideAllWidgetToolbars() { mitkWidget1->HideRenderWindowMenu(); mitkWidget2->HideRenderWindowMenu(); mitkWidget3->HideRenderWindowMenu(); mitkWidget4->HideRenderWindowMenu(); } void QmitkStdMultiWidget::ActivateMenuWidget( bool state ) { mitkWidget1->ActivateMenuWidget( state, this ); mitkWidget2->ActivateMenuWidget( state, this ); mitkWidget3->ActivateMenuWidget( state, this ); mitkWidget4->ActivateMenuWidget( state, this ); } bool QmitkStdMultiWidget::IsMenuWidgetEnabled() const { return mitkWidget1->GetActivateMenuWidgetFlag(); } void QmitkStdMultiWidget::ResetCrosshair() { if (m_DataStorage.IsNotNull()) { mitk::NodePredicateNot::Pointer pred = mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("includeInBoundingBox" , mitk::BoolProperty::New(false))); mitk::NodePredicateNot::Pointer pred2 = mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("includeInBoundingBox" , mitk::BoolProperty::New(true))); mitk::DataStorage::SetOfObjects::ConstPointer rs = m_DataStorage->GetSubset(pred); mitk::DataStorage::SetOfObjects::ConstPointer rs2 = m_DataStorage->GetSubset(pred2); // calculate bounding geometry of these nodes - mitk::TimeSlicedGeometry::Pointer bounds = m_DataStorage->ComputeBoundingGeometry3D(rs, "visible"); + mitk::TimeGeometry::Pointer bounds = m_DataStorage->ComputeBoundingGeometry3D(rs, "visible"); m_RenderingManager->InitializeViews(bounds); //m_RenderingManager->InitializeViews( m_DataStorage->ComputeVisibleBoundingGeometry3D() ); // reset interactor to normal slicing this->SetWidgetPlaneMode(PLANE_MODE_SLICING); } } void QmitkStdMultiWidget::EnableColoredRectangles() { m_RectangleRendering1->Enable(1.0, 0.0, 0.0); m_RectangleRendering2->Enable(0.0, 1.0, 0.0); m_RectangleRendering3->Enable(0.0, 0.0, 1.0); m_RectangleRendering4->Enable(1.0, 1.0, 0.0); } void QmitkStdMultiWidget::DisableColoredRectangles() { m_RectangleRendering1->Disable(); m_RectangleRendering2->Disable(); m_RectangleRendering3->Disable(); m_RectangleRendering4->Disable(); } bool QmitkStdMultiWidget::IsColoredRectanglesEnabled() const { return m_RectangleRendering1->IsEnabled(); } mitk::MouseModeSwitcher* QmitkStdMultiWidget::GetMouseModeSwitcher() { return m_MouseModeSwitcher; } void QmitkStdMultiWidget::MouseModeSelected( mitk::MouseModeSwitcher::MouseMode mouseMode ) { if ( mouseMode == 0 ) { this->EnableNavigationControllerEventListening(); } else { this->DisableNavigationControllerEventListening(); } } mitk::DataNode::Pointer QmitkStdMultiWidget::GetWidgetPlane1() { return this->m_PlaneNode1; } mitk::DataNode::Pointer QmitkStdMultiWidget::GetWidgetPlane2() { return this->m_PlaneNode2; } mitk::DataNode::Pointer QmitkStdMultiWidget::GetWidgetPlane3() { return this->m_PlaneNode3; } mitk::DataNode::Pointer QmitkStdMultiWidget::GetWidgetPlane(int id) { switch(id) { case 1: return this->m_PlaneNode1; break; case 2: return this->m_PlaneNode2; break; case 3: return this->m_PlaneNode3; break; default: return NULL; } } diff --git a/Modules/QmitkExt/QmitkSliceWidget.cpp b/Modules/QmitkExt/QmitkSliceWidget.cpp index a3bda79494..4655f2f6fb 100644 --- a/Modules/QmitkExt/QmitkSliceWidget.cpp +++ b/Modules/QmitkExt/QmitkSliceWidget.cpp @@ -1,370 +1,367 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "QmitkSliceWidget.h" #include "QmitkStepperAdapter.h" #include "mitkNodePredicateDataType.h" + +#include + + //#include "QmitkRenderWindow.h" // //#include "mitkSliceNavigationController.h" //#include "QmitkLevelWindowWidget.h" // //#include //#include "mitkRenderingManager.h" #include #include QmitkSliceWidget::QmitkSliceWidget(QWidget* parent, const char* name, Qt::WindowFlags f) : QWidget(parent, f) { this->setupUi(this); if (name != 0) this->setObjectName(name); popUp = new QMenu(this); popUp->addAction("Axial"); popUp->addAction("Frontal"); popUp->addAction("Sagittal"); QObject::connect(popUp, SIGNAL(triggered(QAction*)), this, SLOT(ChangeView(QAction*)) ); setPopUpEnabled(false); m_SlicedGeometry = 0; m_View = mitk::SliceNavigationController::Axial; QHBoxLayout *hlayout = new QHBoxLayout(container); hlayout->setMargin(0); // create widget QString composedName("QmitkSliceWidget::"); if (!this->objectName().isEmpty()) composedName += this->objectName(); else composedName += "QmitkGLWidget"; m_RenderWindow = new QmitkRenderWindow(container, composedName); m_Renderer = m_RenderWindow->GetRenderer(); hlayout->addWidget(m_RenderWindow); new QmitkStepperAdapter(m_NavigatorWidget, m_RenderWindow->GetSliceNavigationController()->GetSlice(), "navigation"); SetLevelWindowEnabled(true); } mitk::VtkPropRenderer* QmitkSliceWidget::GetRenderer() { return m_Renderer; } QFrame* QmitkSliceWidget::GetSelectionFrame() { return SelectionFrame; } void QmitkSliceWidget::SetDataStorage( mitk::StandaloneDataStorage::Pointer storage) { m_DataStorage = storage; m_Renderer->SetDataStorage(m_DataStorage); } mitk::StandaloneDataStorage* QmitkSliceWidget::GetDataStorage() { if (m_DataStorage.IsNotNull()) { return m_DataStorage; } else { return NULL; } } void QmitkSliceWidget::SetData( mitk::DataStorage::SetOfObjects::ConstIterator it) { SetData(it->Value(), m_View); } void QmitkSliceWidget::SetData( mitk::DataStorage::SetOfObjects::ConstIterator it, mitk::SliceNavigationController::ViewDirection view) { SetData(it->Value(), view); } void QmitkSliceWidget::SetData(mitk::DataNode::Pointer node) { try { if (m_DataStorage.IsNotNull()) { m_DataStorage->Add(node); } } catch (...) { } SetData(node, m_View); } //void QmitkSliceWidget::AddData( mitk::DataNode::Pointer node) //{ // if ( m_DataTree.IsNull() ) // { // m_DataTree = mitk::DataTree::New(); // } // mitk::DataTreePreOrderIterator it(m_DataTree); // it.Add( node ); // SetData(&it, m_View); //} void QmitkSliceWidget::SetData(mitk::DataNode::Pointer /*treeNode*/, mitk::SliceNavigationController::ViewDirection view) { try { if (m_DataStorage.IsNotNull()) { levelWindow->SetDataStorage(m_DataStorage); mitk::DataStorage::SetOfObjects::ConstPointer rs = m_DataStorage->GetSubset(mitk::NodePredicateDataType::New( "Image")); mitk::DataStorage::SetOfObjects::ConstIterator it; bool noVisibleImage = true; for (it = rs->Begin(); it != rs->End(); ++it) { mitk::DataNode::Pointer node = it.Value(); node->SetName("currentImage"); mitk::Image::Pointer image = m_DataStorage->GetNamedObject< mitk::Image> ("currentImage"); if (image.IsNotNull() && node->IsVisible(GetRenderer())) { m_SlicedGeometry = image->GetSlicedGeometry(); mitk::LevelWindow picLevelWindow; node->GetLevelWindow(picLevelWindow, NULL); noVisibleImage = false; break; } } if (noVisibleImage) MITK_INFO << " No image visible!"; GetRenderer()->SetDataStorage(m_DataStorage); } InitWidget(view); } catch (...) { } } void QmitkSliceWidget::InitWidget( mitk::SliceNavigationController::ViewDirection viewDirection) { m_View = viewDirection; mitk::SliceNavigationController* controller = m_RenderWindow->GetSliceNavigationController(); if (viewDirection == mitk::SliceNavigationController::Axial) { controller->SetViewDirection( mitk::SliceNavigationController::Axial); } else if (viewDirection == mitk::SliceNavigationController::Frontal) { controller->SetViewDirection(mitk::SliceNavigationController::Frontal); } // init sagittal view else { controller->SetViewDirection(mitk::SliceNavigationController::Sagittal); } int currentPos = 0; if (m_RenderWindow->GetSliceNavigationController()) { currentPos = controller->GetSlice()->GetPos(); } if (m_SlicedGeometry.IsNull()) { return; } // compute bounding box with respect to first images geometry const mitk::BoundingBox::BoundsArrayType imageBounds = m_SlicedGeometry->GetBoundingBox()->GetBounds(); // mitk::SlicedGeometry3D::Pointer correctGeometry = m_SlicedGeometry.GetPointer(); mitk::Geometry3D::Pointer geometry = static_cast (m_SlicedGeometry->Clone().GetPointer()); const mitk::BoundingBox::Pointer boundingbox = m_DataStorage->ComputeVisibleBoundingBox(GetRenderer(), NULL); if (boundingbox->GetPoints()->Size() > 0) { ////geometry = mitk::Geometry3D::New(); ////geometry->Initialize(); //geometry->SetBounds(boundingbox->GetBounds()); //geometry->SetSpacing(correctGeometry->GetSpacing()); //let's see if we have data with a limited live-span ... mitk::TimeBounds timebounds = m_DataStorage->ComputeTimeBounds( GetRenderer(), NULL); if (timebounds[1] < mitk::ScalarTypeNumericTraits::max()) { mitk::ScalarType duration = timebounds[1] - timebounds[0]; - mitk::TimeSlicedGeometry::Pointer timegeometry = - mitk::TimeSlicedGeometry::New(); - - timegeometry->InitializeEvenlyTimed(geometry.GetPointer(), - (unsigned int) duration); - - timegeometry->SetTimeBounds(timebounds); //@bug really required? FIXME - timebounds[1] = timebounds[0] + 1.0f; geometry->SetTimeBounds(timebounds); - - geometry = timegeometry; } - if (const_cast (geometry->GetBoundingBox())->GetDiagonalLength2() + mitk::ProportionalTimeGeometry::Pointer timeGeometry = mitk::ProportionalTimeGeometry::New(); + timeGeometry->Initialize(geometry,1); + + if (const_cast (timeGeometry->GetBoundingBoxInWorld())->GetDiagonalLength2() >= mitk::eps) { - controller->SetInputWorldGeometry(geometry); + controller->SetInputWorldTimeGeometry(timeGeometry); controller->Update(); } } GetRenderer()->GetDisplayGeometry()->Fit(); mitk::RenderingManager::GetInstance()->RequestUpdate( GetRenderer()->GetRenderWindow()); //int w=vtkObject::GetGlobalWarningDisplay(); //vtkObject::GlobalWarningDisplayOff(); //vtkRenderer * vtkrenderer = ((mitk::OpenGLRenderer*)(GetRenderer()))->GetVtkRenderer(); //if(vtkrenderer!=NULL) vtkrenderer->ResetCamera(); //vtkObject::SetGlobalWarningDisplay(w); } void QmitkSliceWidget::UpdateGL() { GetRenderer()->GetDisplayGeometry()->Fit(); mitk::RenderingManager::GetInstance()->RequestUpdate( GetRenderer()->GetRenderWindow()); } void QmitkSliceWidget::mousePressEvent(QMouseEvent * e) { if (e->button() == Qt::RightButton && popUpEnabled) { popUp->popup(QCursor::pos()); } } void QmitkSliceWidget::wheelEvent(QWheelEvent * e) { int val = m_NavigatorWidget->GetPos(); if (e->orientation() * e->delta() > 0) { m_NavigatorWidget->SetPos(val + 1); } else { if (val > 0) m_NavigatorWidget->SetPos(val - 1); } } void QmitkSliceWidget::ChangeView(QAction* val) { if (val->text() == "Axial") { InitWidget(mitk::SliceNavigationController::Axial); } else if (val->text() == "Frontal") { InitWidget(mitk::SliceNavigationController::Frontal); } else if (val->text() == "Sagittal") { InitWidget(mitk::SliceNavigationController::Sagittal); } } void QmitkSliceWidget::setPopUpEnabled(bool b) { popUpEnabled = b; } QmitkSliderNavigatorWidget* QmitkSliceWidget::GetNavigatorWidget() { return m_NavigatorWidget; } void QmitkSliceWidget::SetLevelWindowEnabled(bool enable) { levelWindow->setEnabled(enable); if (!enable) { levelWindow->setMinimumWidth(0); levelWindow->setMaximumWidth(0); } else { levelWindow->setMinimumWidth(28); levelWindow->setMaximumWidth(28); } } bool QmitkSliceWidget::IsLevelWindowEnabled() { return levelWindow->isEnabled(); } QmitkRenderWindow* QmitkSliceWidget::GetRenderWindow() { return m_RenderWindow; } mitk::SliceNavigationController* QmitkSliceWidget::GetSliceNavigationController() const { return m_RenderWindow->GetSliceNavigationController(); } mitk::CameraRotationController* QmitkSliceWidget::GetCameraRotationController() const { return m_RenderWindow->GetCameraRotationController(); } mitk::BaseController* QmitkSliceWidget::GetController() const { return m_RenderWindow->GetController(); } diff --git a/Modules/QmitkExt/QmitkSlicesInterpolator.cpp b/Modules/QmitkExt/QmitkSlicesInterpolator.cpp index 8e89b7ba79..4157940aa8 100644 --- a/Modules/QmitkExt/QmitkSlicesInterpolator.cpp +++ b/Modules/QmitkExt/QmitkSlicesInterpolator.cpp @@ -1,1079 +1,1079 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "QmitkSlicesInterpolator.h" #include "QmitkStdMultiWidget.h" #include "QmitkSelectableGLWidget.h" #include "mitkToolManager.h" #include "mitkDataNodeFactory.h" #include "mitkLevelWindowProperty.h" #include "mitkColorProperty.h" #include "mitkProperties.h" #include "mitkRenderingManager.h" #include "mitkOverwriteSliceImageFilter.h" #include "mitkProgressBar.h" #include "mitkGlobalInteraction.h" #include "mitkOperationEvent.h" #include "mitkUndoController.h" #include "mitkInteractionConst.h" #include "mitkApplyDiffImageOperation.h" #include "mitkDiffImageApplier.h" #include "mitkSegTool2D.h" #include "mitkCoreObjectFactory.h" #include "mitkSurfaceToImageFilter.h" #include #include #include #include #include #include #include #define ROUND(a) ((a)>0 ? (int)((a)+0.5) : -(int)(0.5-(a))) const std::map QmitkSlicesInterpolator::createActionToSliceDimension() { std::map actionToSliceDimension; actionToSliceDimension[new QAction("Axial (red window)", 0)] = 2; actionToSliceDimension[new QAction("Sagittal (green window)", 0)] = 0; actionToSliceDimension[new QAction("Coronal (blue window)", 0)] = 1; return actionToSliceDimension; } QmitkSlicesInterpolator::QmitkSlicesInterpolator(QWidget* parent, const char* /*name*/) :QWidget(parent), ACTION_TO_SLICEDIMENSION( createActionToSliceDimension() ), m_Interpolator( mitk::SegmentationInterpolationController::New() ), m_MultiWidget(NULL), m_ToolManager(NULL), m_Initialized(false), m_LastSliceDimension(2), m_LastSliceIndex(0), m_2DInterpolationEnabled(false), m_3DInterpolationEnabled(false) { m_SurfaceInterpolator = mitk::SurfaceInterpolationController::GetInstance(); QHBoxLayout* layout = new QHBoxLayout(this); m_GroupBoxEnableExclusiveInterpolationMode = new QGroupBox("Interpolation", this); QGridLayout* grid = new QGridLayout(m_GroupBoxEnableExclusiveInterpolationMode); m_RBtnEnable3DInterpolation = new QRadioButton("3D",this); connect(m_RBtnEnable3DInterpolation, SIGNAL(toggled(bool)), this, SLOT(On3DInterpolationEnabled(bool))); m_RBtnEnable3DInterpolation->setChecked(true); m_RBtnEnable3DInterpolation->setToolTip("Interpolate a binary volume from a set of arbitrarily arranged contours."); grid->addWidget(m_RBtnEnable3DInterpolation,0,0); m_BtnAccept3DInterpolation = new QPushButton("Accept", this); m_BtnAccept3DInterpolation->setEnabled(false); connect(m_BtnAccept3DInterpolation, SIGNAL(clicked()), this, SLOT(OnAccept3DInterpolationClicked())); grid->addWidget(m_BtnAccept3DInterpolation, 0,1); m_CbShowMarkers = new QCheckBox("Show Position Nodes", this); m_CbShowMarkers->setChecked(false); connect(m_CbShowMarkers, SIGNAL(toggled(bool)), this, SLOT(OnShowMarkers(bool))); connect(m_CbShowMarkers, SIGNAL(toggled(bool)), this, SIGNAL(SignalShowMarkerNodes(bool))); grid->addWidget(m_CbShowMarkers,0,2); m_RBtnEnable2DInterpolation = new QRadioButton("2D",this); connect(m_RBtnEnable2DInterpolation, SIGNAL(toggled(bool)), this, SLOT(On2DInterpolationEnabled(bool))); m_RBtnEnable2DInterpolation ->setToolTip("Interpolate contours in left-out slices from a set of slice-by-slice arranged contours."); grid->addWidget(m_RBtnEnable2DInterpolation,1,0); m_BtnAcceptInterpolation = new QPushButton("Accept", this); m_BtnAcceptInterpolation->setEnabled( false ); connect( m_BtnAcceptInterpolation, SIGNAL(clicked()), this, SLOT(OnAcceptInterpolationClicked()) ); grid->addWidget(m_BtnAcceptInterpolation,1,1); m_BtnAcceptAllInterpolations = new QPushButton("... for all slices", this); m_BtnAcceptAllInterpolations->setEnabled( false ); connect( m_BtnAcceptAllInterpolations, SIGNAL(clicked()), this, SLOT(OnAcceptAllInterpolationsClicked()) ); grid->addWidget(m_BtnAcceptAllInterpolations,1,2); m_RBtnDisableInterpolation = new QRadioButton("Disable", this); connect(m_RBtnDisableInterpolation, SIGNAL(toggled(bool)), this, SLOT(OnInterpolationDisabled(bool))); m_RBtnDisableInterpolation->setToolTip("Disable interpolation."); grid->addWidget(m_RBtnDisableInterpolation, 2,0); layout->addWidget(m_GroupBoxEnableExclusiveInterpolationMode); this->setLayout(layout); itk::ReceptorMemberCommand::Pointer command = itk::ReceptorMemberCommand::New(); command->SetCallbackFunction( this, &QmitkSlicesInterpolator::OnInterpolationInfoChanged ); InterpolationInfoChangedObserverTag = m_Interpolator->AddObserver( itk::ModifiedEvent(), command ); itk::ReceptorMemberCommand::Pointer command2 = itk::ReceptorMemberCommand::New(); command2->SetCallbackFunction( this, &QmitkSlicesInterpolator::OnSurfaceInterpolationInfoChanged ); SurfaceInterpolationInfoChangedObserverTag = m_SurfaceInterpolator->AddObserver( itk::ModifiedEvent(), command2 ); // feedback node and its visualization properties m_FeedbackNode = mitk::DataNode::New(); mitk::CoreObjectFactory::GetInstance()->SetDefaultProperties( m_FeedbackNode ); m_FeedbackNode->SetProperty( "binary", mitk::BoolProperty::New(true) ); m_FeedbackNode->SetProperty( "outline binary", mitk::BoolProperty::New(true) ); m_FeedbackNode->SetProperty( "color", mitk::ColorProperty::New(255.0, 255.0, 0.0) ); m_FeedbackNode->SetProperty( "texture interpolation", mitk::BoolProperty::New(false) ); m_FeedbackNode->SetProperty( "layer", mitk::IntProperty::New( 20 ) ); m_FeedbackNode->SetProperty( "levelwindow", mitk::LevelWindowProperty::New( mitk::LevelWindow(0, 1) ) ); m_FeedbackNode->SetProperty( "name", mitk::StringProperty::New("Interpolation feedback") ); m_FeedbackNode->SetProperty( "opacity", mitk::FloatProperty::New(0.8) ); m_FeedbackNode->SetProperty( "helper object", mitk::BoolProperty::New(true) ); m_InterpolatedSurfaceNode = mitk::DataNode::New(); m_InterpolatedSurfaceNode->SetProperty( "color", mitk::ColorProperty::New(255.0,255.0,0.0) ); m_InterpolatedSurfaceNode->SetProperty( "name", mitk::StringProperty::New("Surface Interpolation feedback") ); m_InterpolatedSurfaceNode->SetProperty( "opacity", mitk::FloatProperty::New(0.5) ); m_InterpolatedSurfaceNode->SetProperty( "includeInBoundingBox", mitk::BoolProperty::New(false)); m_InterpolatedSurfaceNode->SetProperty( "helper object", mitk::BoolProperty::New(true) ); m_InterpolatedSurfaceNode->SetVisibility(false); m_3DContourNode = mitk::DataNode::New(); m_3DContourNode->SetProperty( "color", mitk::ColorProperty::New(0.0, 0.0, 0.0) ); m_3DContourNode->SetProperty("helper object", mitk::BoolProperty::New(true)); m_3DContourNode->SetProperty( "name", mitk::StringProperty::New("Drawn Contours") ); m_3DContourNode->SetProperty("material.representation", mitk::VtkRepresentationProperty::New(VTK_WIREFRAME)); m_3DContourNode->SetProperty("material.wireframeLineWidth", mitk::FloatProperty::New(2.0f)); m_3DContourNode->SetProperty("3DContourContainer", mitk::BoolProperty::New(true)); m_3DContourNode->SetProperty( "includeInBoundingBox", mitk::BoolProperty::New(false)); m_3DContourNode->SetVisibility(false, mitk::BaseRenderer::GetInstance( mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget1"))); m_3DContourNode->SetVisibility(false, mitk::BaseRenderer::GetInstance( mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget2"))); m_3DContourNode->SetVisibility(false, mitk::BaseRenderer::GetInstance( mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget3"))); m_3DContourNode->SetVisibility(false, mitk::BaseRenderer::GetInstance( mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget4"))); QWidget::setContentsMargins(0, 0, 0, 0); if ( QWidget::layout() != NULL ) { QWidget::layout()->setContentsMargins(0, 0, 0, 0); } //For running 3D Interpolation in background // create a QFuture and a QFutureWatcher connect(&m_Watcher, SIGNAL(started()), this, SLOT(StartUpdateInterpolationTimer())); connect(&m_Watcher, SIGNAL(finished()), this, SLOT(OnSurfaceInterpolationFinished())); connect(&m_Watcher, SIGNAL(finished()), this, SLOT(StopUpdateInterpolationTimer())); m_Timer = new QTimer(this); connect(m_Timer, SIGNAL(timeout()), this, SLOT(ChangeSurfaceColor())); } void QmitkSlicesInterpolator::SetDataStorage( mitk::DataStorage& storage ) { m_DataStorage = &storage; m_SurfaceInterpolator->SetDataStorage(storage); } mitk::DataStorage* QmitkSlicesInterpolator::GetDataStorage() { if ( m_DataStorage.IsNotNull() ) { return m_DataStorage; } else { return NULL; } } void QmitkSlicesInterpolator::Initialize(mitk::ToolManager* toolManager, QmitkStdMultiWidget* multiWidget) { if (m_Initialized) { // remove old observers if (m_ToolManager) { m_ToolManager->WorkingDataChanged -= mitk::MessageDelegate( this, &QmitkSlicesInterpolator::OnToolManagerWorkingDataModified ); m_ToolManager->ReferenceDataChanged -= mitk::MessageDelegate( this, &QmitkSlicesInterpolator::OnToolManagerReferenceDataModified ); } if (m_MultiWidget) { disconnect( m_MultiWidget, SIGNAL(destroyed(QObject*)), this, SLOT(OnMultiWidgetDeleted(QObject*)) ); mitk::SliceNavigationController* slicer = m_MultiWidget->mitkWidget1->GetSliceNavigationController(); slicer->RemoveObserver( TSliceObserverTag ); slicer->RemoveObserver( TTimeObserverTag ); slicer = m_MultiWidget->mitkWidget2->GetSliceNavigationController(); slicer->RemoveObserver( SSliceObserverTag ); slicer->RemoveObserver( STimeObserverTag ); slicer = m_MultiWidget->mitkWidget3->GetSliceNavigationController(); slicer->RemoveObserver( FSliceObserverTag ); slicer->RemoveObserver( FTimeObserverTag ); } //return; } m_MultiWidget = multiWidget; connect( m_MultiWidget, SIGNAL(destroyed(QObject*)), this, SLOT(OnMultiWidgetDeleted(QObject*)) ); m_ToolManager = toolManager; if (m_ToolManager) { // set enabled only if a segmentation is selected mitk::DataNode* node = m_ToolManager->GetWorkingData(0); QWidget::setEnabled( node != NULL ); // react whenever the set of selected segmentation changes m_ToolManager->WorkingDataChanged += mitk::MessageDelegate( this, &QmitkSlicesInterpolator::OnToolManagerWorkingDataModified ); m_ToolManager->ReferenceDataChanged += mitk::MessageDelegate( this, &QmitkSlicesInterpolator::OnToolManagerReferenceDataModified ); // connect to the steppers of the three multi widget widgets. after each change, call the interpolator if (m_MultiWidget) { mitk::SliceNavigationController* slicer = m_MultiWidget->mitkWidget1->GetSliceNavigationController(); m_TimeStep.resize(3); m_TimeStep[2] = slicer->GetTime()->GetPos(); { itk::MemberCommand::Pointer command = itk::MemberCommand::New(); command->SetCallbackFunction( this, &QmitkSlicesInterpolator::OnAxialTimeChanged ); TTimeObserverTag = slicer->AddObserver( mitk::SliceNavigationController::GeometryTimeEvent(NULL, 0), command ); } { itk::ReceptorMemberCommand::Pointer command = itk::ReceptorMemberCommand::New(); command->SetCallbackFunction( this, &QmitkSlicesInterpolator::OnAxialSliceChanged ); TSliceObserverTag = slicer->AddObserver( mitk::SliceNavigationController::GeometrySliceEvent(NULL, 0), command ); } // connect to the steppers of the three multi widget widgets. after each change, call the interpolator slicer = m_MultiWidget->mitkWidget2->GetSliceNavigationController(); m_TimeStep[0] = slicer->GetTime()->GetPos(); { itk::MemberCommand::Pointer command = itk::MemberCommand::New(); command->SetCallbackFunction( this, &QmitkSlicesInterpolator::OnSagittalTimeChanged ); STimeObserverTag = slicer->AddObserver( mitk::SliceNavigationController::GeometryTimeEvent(NULL, 0), command ); } { itk::ReceptorMemberCommand::Pointer command = itk::ReceptorMemberCommand::New(); command->SetCallbackFunction( this, &QmitkSlicesInterpolator::OnSagittalSliceChanged ); SSliceObserverTag = slicer->AddObserver( mitk::SliceNavigationController::GeometrySliceEvent(NULL, 0), command ); } // connect to the steppers of the three multi widget widgets. after each change, call the interpolator slicer = m_MultiWidget->mitkWidget3->GetSliceNavigationController(); m_TimeStep[1] = slicer->GetTime()->GetPos(); { itk::MemberCommand::Pointer command = itk::MemberCommand::New(); command->SetCallbackFunction( this, &QmitkSlicesInterpolator::OnFrontalTimeChanged ); FTimeObserverTag = slicer->AddObserver( mitk::SliceNavigationController::GeometryTimeEvent(NULL, 0), command ); } { itk::ReceptorMemberCommand::Pointer command = itk::ReceptorMemberCommand::New(); command->SetCallbackFunction( this, &QmitkSlicesInterpolator::OnFrontalSliceChanged ); FSliceObserverTag = slicer->AddObserver( mitk::SliceNavigationController::GeometrySliceEvent(NULL, 0), command ); } } } m_Initialized = true; } QmitkSlicesInterpolator::~QmitkSlicesInterpolator() { if (m_MultiWidget) { mitk::SliceNavigationController* slicer; if(m_MultiWidget->mitkWidget1 != NULL) { slicer = m_MultiWidget->mitkWidget1->GetSliceNavigationController(); slicer->RemoveObserver( TSliceObserverTag ); slicer->RemoveObserver( TTimeObserverTag ); } if(m_MultiWidget->mitkWidget2 != NULL) { slicer = m_MultiWidget->mitkWidget2->GetSliceNavigationController(); slicer->RemoveObserver( SSliceObserverTag ); slicer->RemoveObserver( STimeObserverTag ); } if(m_MultiWidget->mitkWidget3 != NULL) { slicer = m_MultiWidget->mitkWidget3->GetSliceNavigationController(); slicer->RemoveObserver( FSliceObserverTag ); slicer->RemoveObserver( FTimeObserverTag ); } } if(m_DataStorage->Exists(m_3DContourNode)) m_DataStorage->Remove(m_3DContourNode); if(m_DataStorage->Exists(m_InterpolatedSurfaceNode)) m_DataStorage->Remove(m_InterpolatedSurfaceNode); // remove observer m_Interpolator->RemoveObserver( InterpolationInfoChangedObserverTag ); m_SurfaceInterpolator->RemoveObserver( SurfaceInterpolationInfoChangedObserverTag ); delete m_Timer; } void QmitkSlicesInterpolator::On2DInterpolationEnabled(bool status) { OnInterpolationActivated(status); m_Interpolator->Activate2DInterpolation(status); } void QmitkSlicesInterpolator::On3DInterpolationEnabled(bool status) { On3DInterpolationActivated(status); } void QmitkSlicesInterpolator::OnInterpolationDisabled(bool status) { if (status) { OnInterpolationActivated(!status); On3DInterpolationActivated(!status); this->Show3DInterpolationResult(false); } } void QmitkSlicesInterpolator::OnShowMarkers(bool state) { mitk::DataStorage::SetOfObjects::ConstPointer allContourMarkers = m_DataStorage->GetSubset(mitk::NodePredicateProperty::New("isContourMarker" , mitk::BoolProperty::New(true))); for (mitk::DataStorage::SetOfObjects::ConstIterator it = allContourMarkers->Begin(); it != allContourMarkers->End(); ++it) { it->Value()->SetProperty("helper object", mitk::BoolProperty::New(!state)); } } void QmitkSlicesInterpolator::OnToolManagerWorkingDataModified() { //Check if the new working data has already a contourlist for 3D interpolation this->SetCurrentContourListID(); if (m_2DInterpolationEnabled) { OnInterpolationActivated( true ); // re-initialize if needed } if (m_3DInterpolationEnabled) { //On3DInterpolationActivated( true); SetCurrentContourListID(); } } void QmitkSlicesInterpolator::OnToolManagerReferenceDataModified() { if (m_2DInterpolationEnabled) { OnInterpolationActivated( true ); // re-initialize if needed } if (m_3DInterpolationEnabled) { this->Show3DInterpolationResult(false); } } void QmitkSlicesInterpolator::OnAxialTimeChanged(itk::Object* sender, const itk::EventObject& e) { const mitk::SliceNavigationController::GeometryTimeEvent& event = dynamic_cast(e); m_TimeStep[2] = event.GetPos(); if (m_LastSliceDimension == 2) { mitk::SliceNavigationController* snc = dynamic_cast( sender ); if (snc) snc->SendSlice(); // will trigger a new interpolation } } void QmitkSlicesInterpolator::OnTransversalTimeChanged(itk::Object* sender, const itk::EventObject& e) { this->OnAxialTimeChanged(sender, e); } void QmitkSlicesInterpolator::OnSagittalTimeChanged(itk::Object* sender, const itk::EventObject& e) { const mitk::SliceNavigationController::GeometryTimeEvent& event = dynamic_cast(e); m_TimeStep[0] = event.GetPos(); if (m_LastSliceDimension == 0) { mitk::SliceNavigationController* snc = dynamic_cast( sender ); if (snc) snc->SendSlice(); // will trigger a new interpolation } } void QmitkSlicesInterpolator::OnFrontalTimeChanged(itk::Object* sender, const itk::EventObject& e) { const mitk::SliceNavigationController::GeometryTimeEvent& event = dynamic_cast(e); m_TimeStep[1] = event.GetPos(); if (m_LastSliceDimension == 1) { mitk::SliceNavigationController* snc = dynamic_cast( sender ); if (snc) snc->SendSlice(); // will trigger a new interpolation } } void QmitkSlicesInterpolator::OnAxialSliceChanged(const itk::EventObject& e) { if ( TranslateAndInterpolateChangedSlice( e, 2 ) ) { if (m_MultiWidget) { mitk::BaseRenderer::GetInstance(m_MultiWidget->mitkWidget1->GetRenderWindow())->RequestUpdate(); } } } void QmitkSlicesInterpolator::OnTransversalSliceChanged(const itk::EventObject& e) { this->OnAxialSliceChanged(e); } void QmitkSlicesInterpolator::OnSagittalSliceChanged(const itk::EventObject& e) { if ( TranslateAndInterpolateChangedSlice( e, 0 ) ) { if (m_MultiWidget) { mitk::BaseRenderer::GetInstance(m_MultiWidget->mitkWidget2->GetRenderWindow())->RequestUpdate(); } } } void QmitkSlicesInterpolator::OnFrontalSliceChanged(const itk::EventObject& e) { if ( TranslateAndInterpolateChangedSlice( e, 1 ) ) { if (m_MultiWidget) { mitk::BaseRenderer::GetInstance(m_MultiWidget->mitkWidget3->GetRenderWindow())->RequestUpdate(); } } } bool QmitkSlicesInterpolator::TranslateAndInterpolateChangedSlice(const itk::EventObject& e, unsigned int windowID) { if (!m_2DInterpolationEnabled) return false; try { const mitk::SliceNavigationController::GeometrySliceEvent& event = dynamic_cast(e); - mitk::TimeSlicedGeometry* tsg = event.GetTimeSlicedGeometry(); + mitk::TimeGeometry* tsg = event.GetTimeGeometry(); if (tsg && m_TimeStep.size() > windowID) { - mitk::SlicedGeometry3D* slicedGeometry = dynamic_cast(tsg->GetGeometry3D(m_TimeStep[windowID])); + mitk::SlicedGeometry3D* slicedGeometry = dynamic_cast(tsg->GetGeometryForTimeStep(m_TimeStep[windowID])); if (slicedGeometry) { mitk::PlaneGeometry* plane = dynamic_cast(slicedGeometry->GetGeometry2D( event.GetPos() )); if (plane) Interpolate( plane, m_TimeStep[windowID] ); return true; } } } catch(std::bad_cast) { return false; // so what } return false; } void QmitkSlicesInterpolator::Interpolate( mitk::PlaneGeometry* plane, unsigned int timeStep ) { if (m_ToolManager) { mitk::DataNode* node = m_ToolManager->GetWorkingData(0); if (node) { m_Segmentation = dynamic_cast(node->GetData()); if (m_Segmentation) { int clickedSliceDimension(-1); int clickedSliceIndex(-1); // calculate real slice position, i.e. slice of the image and not slice of the TimeSlicedGeometry mitk::SegTool2D::DetermineAffectedImageSlice( m_Segmentation, plane, clickedSliceDimension, clickedSliceIndex ); mitk::Image::Pointer interpolation = m_Interpolator->Interpolate( clickedSliceDimension, clickedSliceIndex, timeStep ); m_FeedbackNode->SetData( interpolation ); // Workaround for Bug 11318 if ((interpolation.IsNotNull()) && (interpolation->GetGeometry() != NULL)) { if(clickedSliceDimension == 1) { mitk::Point3D orig = interpolation->GetGeometry()->GetOrigin(); orig[0] = orig[0]; orig[1] = orig[1] + 0.5; orig[2] = orig[2]; interpolation->GetGeometry()->SetOrigin(orig); } } // Workaround for Bug 11318 END m_LastSliceDimension = clickedSliceDimension; m_LastSliceIndex = clickedSliceIndex; } } } } void QmitkSlicesInterpolator::OnSurfaceInterpolationFinished() { mitk::Surface::Pointer interpolatedSurface = m_SurfaceInterpolator->GetInterpolationResult(); if(interpolatedSurface.IsNotNull()) { m_BtnAccept3DInterpolation->setEnabled(true); m_InterpolatedSurfaceNode->SetData(interpolatedSurface); m_3DContourNode->SetData(m_SurfaceInterpolator->GetContoursAsSurface()); this->Show3DInterpolationResult(true); if( !m_DataStorage->Exists(m_InterpolatedSurfaceNode) && !m_DataStorage->Exists(m_3DContourNode)) { m_DataStorage->Add(m_3DContourNode); m_DataStorage->Add(m_InterpolatedSurfaceNode); } } else if (interpolatedSurface.IsNull()) { m_BtnAccept3DInterpolation->setEnabled(false); if (m_DataStorage->Exists(m_InterpolatedSurfaceNode)) { this->Show3DInterpolationResult(false); } } if (m_MultiWidget) { mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } } void QmitkSlicesInterpolator::OnAcceptInterpolationClicked() { if (m_Segmentation && m_FeedbackNode->GetData()) { //making interpolation separately undoable mitk::UndoStackItem::IncCurrObjectEventId(); mitk::UndoStackItem::IncCurrGroupEventId(); mitk::UndoStackItem::ExecuteIncrement(); mitk::OverwriteSliceImageFilter::Pointer slicewriter = mitk::OverwriteSliceImageFilter::New(); slicewriter->SetInput( m_Segmentation ); slicewriter->SetCreateUndoInformation( true ); slicewriter->SetSliceImage( dynamic_cast(m_FeedbackNode->GetData()) ); slicewriter->SetSliceDimension( m_LastSliceDimension ); slicewriter->SetSliceIndex( m_LastSliceIndex ); slicewriter->SetTimeStep( m_TimeStep[m_LastSliceDimension] ); slicewriter->Update(); m_FeedbackNode->SetData(NULL); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } } void QmitkSlicesInterpolator::AcceptAllInterpolations(unsigned int windowID) { // first creates a 3D diff image, then applies this diff to the segmentation if (m_Segmentation) { int sliceDimension(-1); int dummySliceIndex(-1); if (!GetSliceForWindowsID(windowID, sliceDimension, dummySliceIndex)) { return; // cannot determine slice orientation } //making interpolation separately undoable mitk::UndoStackItem::IncCurrObjectEventId(); mitk::UndoStackItem::IncCurrGroupEventId(); mitk::UndoStackItem::ExecuteIncrement(); // create a diff image for the undo operation mitk::Image::Pointer diffImage = mitk::Image::New(); diffImage->Initialize( m_Segmentation ); mitk::PixelType pixelType( mitk::MakeScalarPixelType() ); diffImage->Initialize( pixelType, 3, m_Segmentation->GetDimensions() ); memset( diffImage->GetData(), 0, (pixelType.GetBpe() >> 3) * diffImage->GetDimension(0) * diffImage->GetDimension(1) * diffImage->GetDimension(2) ); // now the diff image is all 0 unsigned int timeStep( m_TimeStep[windowID] ); // a slicewriter to create the diff image mitk::OverwriteSliceImageFilter::Pointer diffslicewriter = mitk::OverwriteSliceImageFilter::New(); diffslicewriter->SetCreateUndoInformation( false ); diffslicewriter->SetInput( diffImage ); diffslicewriter->SetSliceDimension( sliceDimension ); diffslicewriter->SetTimeStep( timeStep ); unsigned int totalChangedSlices(0); unsigned int zslices = m_Segmentation->GetDimension( sliceDimension ); mitk::ProgressBar::GetInstance()->AddStepsToDo(zslices); for (unsigned int sliceIndex = 0; sliceIndex < zslices; ++sliceIndex) { mitk::Image::Pointer interpolation = m_Interpolator->Interpolate( sliceDimension, sliceIndex, timeStep ); if (interpolation.IsNotNull()) // we don't check if interpolation is necessary/sensible - but m_Interpolator does { diffslicewriter->SetSliceImage( interpolation ); diffslicewriter->SetSliceIndex( sliceIndex ); diffslicewriter->Update(); ++totalChangedSlices; } mitk::ProgressBar::GetInstance()->Progress(); } if (totalChangedSlices > 0) { // store undo stack items if ( true ) { // create do/undo operations (we don't execute the doOp here, because it has already been executed during calculation of the diff image mitk::ApplyDiffImageOperation* doOp = new mitk::ApplyDiffImageOperation( mitk::OpTEST, m_Segmentation, diffImage, timeStep ); mitk::ApplyDiffImageOperation* undoOp = new mitk::ApplyDiffImageOperation( mitk::OpTEST, m_Segmentation, diffImage, timeStep ); undoOp->SetFactor( -1.0 ); std::stringstream comment; comment << "Accept all interpolations (" << totalChangedSlices << ")"; mitk::OperationEvent* undoStackItem = new mitk::OperationEvent( mitk::DiffImageApplier::GetInstanceForUndo(), doOp, undoOp, comment.str() ); mitk::UndoController::GetCurrentUndoModel()->SetOperationEvent( undoStackItem ); // acutally apply the changes here mitk::DiffImageApplier::GetInstanceForUndo()->ExecuteOperation( doOp ); } } m_FeedbackNode->SetData(NULL); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } } void QmitkSlicesInterpolator::FinishInterpolation(int windowID) { //this redirect is for calling from outside if (windowID < 0) OnAcceptAllInterpolationsClicked(); else AcceptAllInterpolations( (unsigned int)windowID ); } void QmitkSlicesInterpolator::OnAcceptAllInterpolationsClicked() { QMenu orientationPopup(this); std::map::const_iterator it; for(it = ACTION_TO_SLICEDIMENSION.begin(); it != ACTION_TO_SLICEDIMENSION.end(); it++) orientationPopup.addAction(it->first); connect( &orientationPopup, SIGNAL(triggered(QAction*)), this, SLOT(OnAcceptAllPopupActivated(QAction*)) ); orientationPopup.exec( QCursor::pos() ); } void QmitkSlicesInterpolator::OnAccept3DInterpolationClicked() { if (m_InterpolatedSurfaceNode.IsNotNull() && m_InterpolatedSurfaceNode->GetData()) { mitk::SurfaceToImageFilter::Pointer s2iFilter = mitk::SurfaceToImageFilter::New(); s2iFilter->MakeOutputBinaryOn(); s2iFilter->SetInput(dynamic_cast(m_InterpolatedSurfaceNode->GetData())); // check if ToolManager holds valid ReferenceData if (m_ToolManager->GetReferenceData(0) == NULL) { return; } s2iFilter->SetImage(dynamic_cast(m_ToolManager->GetReferenceData(0)->GetData())); s2iFilter->Update(); mitk::DataNode* segmentationNode = m_ToolManager->GetWorkingData(0); segmentationNode->SetData(s2iFilter->GetOutput()); m_RBtnDisableInterpolation->setChecked(true); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); this->Show3DInterpolationResult(false); } } void QmitkSlicesInterpolator::OnAcceptAllPopupActivated(QAction* action) { try { std::map::const_iterator iter = ACTION_TO_SLICEDIMENSION.find( action ); if (iter != ACTION_TO_SLICEDIMENSION.end()) { int windowID = iter->second; AcceptAllInterpolations( windowID ); } } catch(...) { /* Showing message box with possible memory error */ QMessageBox errorInfo; errorInfo.setWindowTitle("Interpolation Process"); errorInfo.setIcon(QMessageBox::Critical); errorInfo.setText("An error occurred during interpolation. Possible cause: Not enough memory!"); errorInfo.exec(); //additional error message on std::cerr std::cerr << "Ill construction in " __FILE__ " l. " << __LINE__ << std::endl; } } void QmitkSlicesInterpolator::OnInterpolationActivated(bool on) { m_2DInterpolationEnabled = on; try { if ( m_DataStorage.IsNotNull() ) { if (on && !m_DataStorage->Exists(m_FeedbackNode)) { m_DataStorage->Add( m_FeedbackNode ); } //else //{ // m_DataStorage->Remove( m_FeedbackNode ); //} } } catch(...) { // don't care (double add/remove) } if (m_ToolManager) { mitk::DataNode* workingNode = m_ToolManager->GetWorkingData(0); mitk::DataNode* referenceNode = m_ToolManager->GetReferenceData(0); QWidget::setEnabled( workingNode != NULL ); m_BtnAcceptAllInterpolations->setEnabled( on ); m_BtnAcceptInterpolation->setEnabled( on ); m_FeedbackNode->SetVisibility( on ); if (!on) { mitk::RenderingManager::GetInstance()->RequestUpdateAll(); return; } if (workingNode) { mitk::Image* segmentation = dynamic_cast(workingNode->GetData()); if (segmentation) { m_Interpolator->SetSegmentationVolume( segmentation ); if (referenceNode) { mitk::Image* referenceImage = dynamic_cast(referenceNode->GetData()); m_Interpolator->SetReferenceVolume( referenceImage ); // may be NULL } } } } UpdateVisibleSuggestion(); } void QmitkSlicesInterpolator::Run3DInterpolation() { m_SurfaceInterpolator->Interpolate(); } void QmitkSlicesInterpolator::StartUpdateInterpolationTimer() { m_Timer->start(500); } void QmitkSlicesInterpolator::StopUpdateInterpolationTimer() { m_Timer->stop(); m_InterpolatedSurfaceNode->SetProperty("color", mitk::ColorProperty::New(255.0,255.0,0.0)); mitk::RenderingManager::GetInstance()->RequestUpdate(mitk::BaseRenderer::GetInstance( mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget4"))->GetRenderWindow()); } void QmitkSlicesInterpolator::ChangeSurfaceColor() { float currentColor[3]; m_InterpolatedSurfaceNode->GetColor(currentColor); float yellow[3] = {255.0,255.0,0.0}; if( currentColor[2] == yellow[2]) { m_InterpolatedSurfaceNode->SetProperty("color", mitk::ColorProperty::New(255.0,255.0,255.0)); } else { m_InterpolatedSurfaceNode->SetProperty("color", mitk::ColorProperty::New(yellow)); } m_InterpolatedSurfaceNode->Update(); mitk::RenderingManager::GetInstance()->RequestUpdate(mitk::BaseRenderer::GetInstance( mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget4"))->GetRenderWindow()); } void QmitkSlicesInterpolator::On3DInterpolationActivated(bool on) { m_3DInterpolationEnabled = on; try { if ( m_DataStorage.IsNotNull() && m_ToolManager && m_3DInterpolationEnabled) { mitk::DataNode* workingNode = m_ToolManager->GetWorkingData(0); if (workingNode) { bool isInterpolationResult(false); workingNode->GetBoolProperty("3DInterpolationResult",isInterpolationResult); if ((workingNode->IsSelected() && workingNode->IsVisible(mitk::BaseRenderer::GetInstance( mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget3")))) && !isInterpolationResult && m_3DInterpolationEnabled) { int ret = QMessageBox::Yes; if (m_SurfaceInterpolator->EstimatePortionOfNeededMemory() > 0.5) { QMessageBox msgBox; msgBox.setText("Due to short handed system memory the 3D interpolation may be very slow!"); msgBox.setInformativeText("Are you sure you want to activate the 3D interpolation?"); msgBox.setStandardButtons(QMessageBox::No | QMessageBox::Yes); ret = msgBox.exec(); } if (m_Watcher.isRunning()) m_Watcher.waitForFinished(); if (ret == QMessageBox::Yes) { m_Future = QtConcurrent::run(this, &QmitkSlicesInterpolator::Run3DInterpolation); m_Watcher.setFuture(m_Future); } else { m_RBtnDisableInterpolation->toggle(); } } else if (!m_3DInterpolationEnabled) { this->Show3DInterpolationResult(false); m_BtnAccept3DInterpolation->setEnabled(m_3DInterpolationEnabled); } } else { QWidget::setEnabled( false ); m_CbShowMarkers->setEnabled(m_3DInterpolationEnabled); } } if (!m_3DInterpolationEnabled) { this->Show3DInterpolationResult(false); m_BtnAccept3DInterpolation->setEnabled(m_3DInterpolationEnabled); } } catch(...) { MITK_ERROR<<"Error with 3D surface interpolation!"; } mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkSlicesInterpolator::EnableInterpolation(bool on) { // only to be called from the outside world // just a redirection to OnInterpolationActivated OnInterpolationActivated(on); } void QmitkSlicesInterpolator::Enable3DInterpolation(bool on) { // only to be called from the outside world // just a redirection to OnInterpolationActivated On3DInterpolationActivated(on); } void QmitkSlicesInterpolator::UpdateVisibleSuggestion() { if (m_2DInterpolationEnabled) { // determine which one is the current view, try to do an initial interpolation mitk::BaseRenderer* renderer = mitk::GlobalInteraction::GetInstance()->GetFocus(); if (renderer && renderer->GetMapperID() == mitk::BaseRenderer::Standard2D) { - const mitk::TimeSlicedGeometry* timeSlicedGeometry = dynamic_cast( renderer->GetWorldGeometry() ); + const mitk::TimeGeometry* timeSlicedGeometry = dynamic_cast( renderer->GetWorldGeometry() ); if (timeSlicedGeometry) { - mitk::SliceNavigationController::GeometrySliceEvent event( const_cast(timeSlicedGeometry), renderer->GetSlice() ); + mitk::SliceNavigationController::GeometrySliceEvent event( const_cast(timeSlicedGeometry), renderer->GetSlice() ); if ( renderer->GetCurrentWorldGeometry2DNode() ) { if ( renderer->GetCurrentWorldGeometry2DNode()==this->m_MultiWidget->GetWidgetPlane1() ) { TranslateAndInterpolateChangedSlice( event, 2 ); } else if ( renderer->GetCurrentWorldGeometry2DNode()==this->m_MultiWidget->GetWidgetPlane2() ) { TranslateAndInterpolateChangedSlice( event, 0 ); } else if ( renderer->GetCurrentWorldGeometry2DNode()==this->m_MultiWidget->GetWidgetPlane3() ) { TranslateAndInterpolateChangedSlice( event, 1 ); } } } } } mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkSlicesInterpolator::OnInterpolationInfoChanged(const itk::EventObject& /*e*/) { // something (e.g. undo) changed the interpolation info, we should refresh our display UpdateVisibleSuggestion(); } void QmitkSlicesInterpolator::OnSurfaceInterpolationInfoChanged(const itk::EventObject& /*e*/) { if(m_3DInterpolationEnabled) { if (m_Watcher.isRunning()) m_Watcher.waitForFinished(); m_Future = QtConcurrent::run(this, &QmitkSlicesInterpolator::Run3DInterpolation); m_Watcher.setFuture(m_Future); } } bool QmitkSlicesInterpolator::GetSliceForWindowsID(unsigned windowID, int& sliceDimension, int& sliceIndex) { mitk::BaseRenderer* renderer(NULL); // find sliceDimension for windowID: // windowID 2: axial window = renderWindow1 // windowID 1: frontal window = renderWindow3 // windowID 0: sagittal window = renderWindow2 if ( m_MultiWidget ) { switch (windowID) { case 2: default: renderer = m_MultiWidget->mitkWidget1->GetRenderer(); break; case 1: renderer = m_MultiWidget->mitkWidget3->GetRenderer(); break; case 0: renderer = m_MultiWidget->mitkWidget2->GetRenderer(); break; } } if ( m_Segmentation && renderer && renderer->GetMapperID() == mitk::BaseRenderer::Standard2D) { const mitk::TimeSlicedGeometry* timeSlicedGeometry = dynamic_cast( renderer->GetWorldGeometry() ); if (timeSlicedGeometry) { mitk::SlicedGeometry3D* slicedGeometry = dynamic_cast(timeSlicedGeometry->GetGeometry3D(m_TimeStep[windowID])); if (slicedGeometry) { mitk::PlaneGeometry* plane = dynamic_cast(slicedGeometry->GetGeometry2D( renderer->GetSlice() )); Interpolate( plane, m_TimeStep[windowID] ); return mitk::SegTool2D::DetermineAffectedImageSlice( m_Segmentation, plane, sliceDimension, sliceIndex ); } } } return false; } void QmitkSlicesInterpolator::OnMultiWidgetDeleted(QObject*) { if (m_MultiWidget) { m_MultiWidget = NULL; } } void QmitkSlicesInterpolator:: SetCurrentContourListID() { if ( m_DataStorage.IsNotNull() && m_ToolManager ) { mitk::DataNode* workingNode = m_ToolManager->GetWorkingData(0); if (workingNode) { //int listID; bool isInterpolationResult(false); workingNode->GetBoolProperty("3DInterpolationResult",isInterpolationResult); if ((m_MultiWidget != NULL && workingNode->IsSelected() && workingNode->IsVisible(mitk::BaseRenderer::GetInstance( mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget3")))) && !isInterpolationResult) { QWidget::setEnabled( true ); mitk::Vector3D spacing = workingNode->GetData()->GetGeometry( m_MultiWidget->GetRenderWindow3()->GetRenderer()->GetTimeStep() )->GetSpacing(); double minSpacing (100); double maxSpacing (0); for (int i =0; i < 3; i++) { if (spacing[i] < minSpacing) { minSpacing = spacing[i]; } else if (spacing[i] > maxSpacing) { maxSpacing = spacing[i]; } } m_SurfaceInterpolator->SetSegmentationImage(dynamic_cast(workingNode->GetData())); m_SurfaceInterpolator->SetMaxSpacing(maxSpacing); m_SurfaceInterpolator->SetMinSpacing(minSpacing); m_SurfaceInterpolator->SetDistanceImageVolume(50000); m_SurfaceInterpolator->SetCurrentSegmentationInterpolationList(dynamic_cast(workingNode->GetData())); } } } } void QmitkSlicesInterpolator::Show3DInterpolationResult(bool status) { if (m_InterpolatedSurfaceNode.IsNotNull()) m_InterpolatedSurfaceNode->SetVisibility(status); if (m_3DContourNode.IsNotNull()) m_3DContourNode->SetVisibility(status, mitk::BaseRenderer::GetInstance( mitk::BaseRenderer::GetRenderWindowByName("stdmulti.widget4"))); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } diff --git a/Plugins/org.mitk.gui.common/src/mitkWorkbenchUtil.cpp b/Plugins/org.mitk.gui.common/src/mitkWorkbenchUtil.cpp index c547c8d112..0aa8cb30c8 100644 --- a/Plugins/org.mitk.gui.common/src/mitkWorkbenchUtil.cpp +++ b/Plugins/org.mitk.gui.common/src/mitkWorkbenchUtil.cpp @@ -1,348 +1,348 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "mitkWorkbenchUtil.h" #include #include #include #include #include #include "mitkIDataStorageService.h" #include "mitkDataStorageEditorInput.h" #include "mitkRenderingManager.h" #include "mitkIRenderWindowPart.h" #include "mitkIRenderingManager.h" #include "mitkProperties.h" #include "mitkNodePredicateData.h" #include "mitkNodePredicateNot.h" #include "mitkNodePredicateProperty.h" #include "mitkIOUtil.h" #include "mitkWorkbenchUtil.h" #include #include #include #include #include "internal/org_mitk_gui_common_Activator.h" namespace mitk { struct WorkbenchUtilPrivate { /** * Get the editor descriptor for a given name using the editorDescriptor * passed in as a default as a starting point. * * @param name * The name of the element to open. * @param editorReg * The editor registry to do the lookups from. * @param defaultDescriptor * IEditorDescriptor or null * @return IEditorDescriptor * @throws PartInitException * if no valid editor can be found */ static berry::IEditorDescriptor::Pointer GetEditorDescriptor(const QString& name, berry::IEditorRegistry* editorReg, berry::IEditorDescriptor::Pointer defaultDescriptor) { if (defaultDescriptor.IsNotNull()) { return defaultDescriptor; } berry::IEditorDescriptor::Pointer editorDesc = defaultDescriptor; // next check the OS for in-place editor (OLE on Win32) if (editorReg->IsSystemInPlaceEditorAvailable(name.toStdString())) { editorDesc = editorReg->FindEditor(berry::IEditorRegistry::SYSTEM_INPLACE_EDITOR_ID); } // next check with the OS for an external editor if (editorDesc.IsNull() && editorReg->IsSystemExternalEditorAvailable(name.toStdString())) { editorDesc = editorReg->FindEditor(berry::IEditorRegistry::SYSTEM_EXTERNAL_EDITOR_ID); } // if no valid editor found, bail out if (editorDesc.IsNull()) { throw berry::PartInitException("No editor found"); } return editorDesc; } }; // //! [UtilLoadFiles] void WorkbenchUtil::LoadFiles(const QStringList &fileNames, berry::IWorkbenchWindow::Pointer window, bool openEditor) // //! [UtilLoadFiles] { if (fileNames.empty()) return; mitk::IDataStorageReference::Pointer dataStorageRef; { ctkPluginContext* context = mitk::PluginActivator::GetContext(); mitk::IDataStorageService* dss = 0; ctkServiceReference dsRef = context->getServiceReference(); if (dsRef) { dss = context->getService(dsRef); } if (!dss) { QString msg = "IDataStorageService service not available. Unable to open files."; MITK_WARN << msg.toStdString(); QMessageBox::warning(QApplication::activeWindow(), "Unable to open files", msg); return; } // Get the active data storage (or the default one, if none is active) dataStorageRef = dss->GetDataStorage(); context->ungetService(dsRef); } mitk::DataStorage::Pointer dataStorage = dataStorageRef->GetDataStorage(); // Do the actual work of loading the data into the data storage std::vector fileNames2; // Correct conversion for File names.(BUG 12252) fileNames2.resize(fileNames.size()); for (int i = 0; i< fileNames.size(); i++) fileNames2[i] = std::string(QFile::encodeName(fileNames[i]).data()); // Old conversion which returns wrong encoded Non-Latin-Characters. //ctk::qListToSTLVector(fileNames, fileNames2); // Turn off ASSERT #if defined(_MSC_VER) && !defined(NDEBUG) && defined(_DEBUG) && defined(_CRT_ERROR) int lastCrtReportType = _CrtSetReportMode( _CRT_ASSERT, _CRTDBG_MODE_DEBUG ); #endif const bool dsmodified = mitk::IOUtil::LoadFiles(fileNames2, *dataStorage); // Set ASSERT status back to previous status. #if defined(_MSC_VER) && !defined(NDEBUG) && defined(_DEBUG) && defined(_CRT_ERROR) if (lastCrtReportType) _CrtSetReportMode( _CRT_ASSERT, lastCrtReportType ); #endif // Check if there is an open perspective. If not, open the default perspective. if (window->GetActivePage().IsNull()) { std::string defaultPerspId = window->GetWorkbench()->GetPerspectiveRegistry()->GetDefaultPerspective(); window->GetWorkbench()->ShowPerspective(defaultPerspId, window); } if (openEditor) { try { // Activate the editor using the same data storage or open the default editor mitk::DataStorageEditorInput::Pointer input(new mitk::DataStorageEditorInput(dataStorageRef)); berry::IEditorPart::Pointer editor = mitk::WorkbenchUtil::OpenEditor(window->GetActivePage(), input, true); mitk::IRenderWindowPart* renderEditor = dynamic_cast(editor.GetPointer()); mitk::IRenderingManager* renderingManager = renderEditor == 0 ? 0 : renderEditor->GetRenderingManager(); if(dsmodified && renderingManager) { // get all nodes that have not set "includeInBoundingBox" to false mitk::NodePredicateNot::Pointer pred = mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("includeInBoundingBox" , mitk::BoolProperty::New(false))); mitk::DataStorage::SetOfObjects::ConstPointer rs = dataStorage->GetSubset(pred); // calculate bounding geometry of these nodes - mitk::TimeSlicedGeometry::Pointer bounds = dataStorage->ComputeBoundingGeometry3D(rs); + mitk::TimeGeometry::Pointer bounds = dataStorage->ComputeBoundingGeometry3D(rs); // initialize the views to the bounding geometry renderingManager->InitializeViews(bounds); } } catch (const berry::PartInitException& e) { QString msg = "An error occurred when displaying the file(s): %1"; QMessageBox::warning(QApplication::activeWindow(), "Error displaying file", msg.arg(QString::fromStdString(e.message()))); } } } berry::IEditorPart::Pointer WorkbenchUtil::OpenEditor(berry::IWorkbenchPage::Pointer page, berry::IEditorInput::Pointer input, const QString &editorId, bool activate) { // sanity checks if (page.IsNull()) { throw std::invalid_argument("page argument must not be NULL"); } // open the editor on the input return page->OpenEditor(input, editorId.toStdString(), activate); } berry::IEditorPart::Pointer WorkbenchUtil::OpenEditor(berry::IWorkbenchPage::Pointer page, mitk::DataStorageEditorInput::Pointer input, bool activate, bool determineContentType) { // sanity checks if (page.IsNull()) { throw std::invalid_argument("page argument must not be NULL"); } // open the editor on the data storage QString name = QString::fromStdString(input->GetName()) + ".mitk"; berry::IEditorDescriptor::Pointer editorDesc = WorkbenchUtilPrivate::GetEditorDescriptor(name, berry::PlatformUI::GetWorkbench()->GetEditorRegistry(), GetDefaultEditor(name, determineContentType)); return page->OpenEditor(input, editorDesc->GetId(), activate); } berry::IEditorDescriptor::Pointer WorkbenchUtil::GetEditorDescriptor( const QString& name, bool /*inferContentType*/) { if (name.isEmpty()) { throw std::invalid_argument("name argument must not be empty"); } // no used for now //IContentType contentType = inferContentType ? Platform // .getContentTypeManager().findContentTypeFor(name) : null; berry::IEditorRegistry* editorReg = berry::PlatformUI::GetWorkbench()->GetEditorRegistry(); return WorkbenchUtilPrivate::GetEditorDescriptor(name, editorReg, editorReg->GetDefaultEditor(name.toStdString() /*, contentType*/)); } berry::IEditorDescriptor::Pointer WorkbenchUtil::GetDefaultEditor(const QString& name, bool /*determineContentType*/) { // Try file specific editor. berry::IEditorRegistry* editorReg = berry::PlatformUI::GetWorkbench()->GetEditorRegistry(); try { QString editorID; // = file.getPersistentProperty(EDITOR_KEY); if (!editorID.isEmpty()) { berry::IEditorDescriptor::Pointer desc = editorReg->FindEditor(editorID.toStdString()); if (desc.IsNotNull()) { return desc; } } } catch (const berry::CoreException& e) { // do nothing } // IContentType contentType = null; // if (determineContentType) // { // contentType = getContentType(file); // } // Try lookup with filename return editorReg->GetDefaultEditor(name.toStdString()); //, contentType); } bool WorkbenchUtil::SetDepartmentLogoPreference(const QString &logoResource, ctkPluginContext *context) { // The logo must be available in the local filesystem. We check if we have not already extracted the // logo from the plug-in or if this plug-ins timestamp is newer then the already extracted logo timestamp. // If one of the conditions is true, extract it and write it to the plug-in specific storage location. const QString logoFileName = logoResource.mid(logoResource.lastIndexOf('/')+1); const QString logoPath = context->getDataFile("").absoluteFilePath(); bool extractLogo = true; QFileInfo logoFileInfo(logoPath + "/" + logoFileName); if (logoFileInfo.exists()) { // The logo has been extracted previously. Check if the plugin timestamp is newer, which // means it might contain an updated logo. QString pluginLocation = QUrl(context->getPlugin()->getLocation()).toLocalFile(); if (!pluginLocation.isEmpty()) { QFileInfo pluginFileInfo(pluginLocation); if (logoFileInfo.lastModified() > pluginFileInfo.lastModified()) { extractLogo = false; } } } if (extractLogo) { // Extract the logo from the shared library and write it to disk. QFile logo(logoResource); if (logo.open(QIODevice::ReadOnly)) { QFile localLogo(logoPath + "/" + logoFileName); if (localLogo.open(QIODevice::WriteOnly)) { localLogo.write(logo.readAll()); } } } logoFileInfo.refresh(); if (logoFileInfo.exists()) { // Get the preferences service ctkServiceReference prefServiceRef = context->getServiceReference(); berry::IPreferencesService* prefService = NULL; if (prefServiceRef) { prefService = context->getService(prefServiceRef); } if (prefService) { prefService->GetSystemPreferences()->Put("DepartmentLogo", qPrintable(logoFileInfo.absoluteFilePath())); } else { BERRY_WARN << "Preferences service not available, unable to set custom logo."; return false; } } else { BERRY_WARN << "Custom logo at " << logoFileInfo.absoluteFilePath().toStdString() << " does not exist"; return false; } return true; } } // namespace mitk diff --git a/Plugins/org.mitk.gui.qt.datamanager/src/QmitkDataManagerView.cpp b/Plugins/org.mitk.gui.qt.datamanager/src/QmitkDataManagerView.cpp index aa5c4967e2..b36346c3f1 100644 --- a/Plugins/org.mitk.gui.qt.datamanager/src/QmitkDataManagerView.cpp +++ b/Plugins/org.mitk.gui.qt.datamanager/src/QmitkDataManagerView.cpp @@ -1,942 +1,942 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "QmitkDataManagerView.h" #include //# Own Includes //## mitk #include "mitkDataStorageEditorInput.h" #include "mitkIDataStorageReference.h" #include "mitkNodePredicateDataType.h" #include "mitkCoreObjectFactory.h" #include "mitkPACSPlugin.h" #include "mitkDataNodeFactory.h" #include "mitkColorProperty.h" #include "mitkCommon.h" #include "mitkDelegateManager.h" #include "mitkNodePredicateData.h" #include "mitkNodePredicateNot.h" #include "mitkNodePredicateProperty.h" #include "mitkEnumerationProperty.h" #include "mitkProperties.h" #include #include #include #include //## Qmitk #include #include #include #include #include #include #include #include "src/internal/QmitkNodeTableViewKeyFilter.h" #include "src/internal/QmitkInfoDialog.h" //## Berry #include #include #include #include #include #include //# Toolkit Includes #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include "mitkDataNodeObject.h" #include "mitkIContextMenuAction.h" #include "berryIExtensionPointService.h" const std::string QmitkDataManagerView::VIEW_ID = "org.mitk.views.datamanager"; QmitkDataManagerView::QmitkDataManagerView() { } QmitkDataManagerView::~QmitkDataManagerView() { //Remove all registered actions from each descriptor for (std::vector< std::pair< QmitkNodeDescriptor*, QAction* > >::iterator it = m_DescriptorActionList.begin();it != m_DescriptorActionList.end(); it++) { // first== the NodeDescriptor; second== the registered QAction (it->first)->RemoveAction(it->second); } } void QmitkDataManagerView::CreateQtPartControl(QWidget* parent) { m_CurrentRowCount = 0; m_Parent = parent; //# Preferences berry::IPreferencesService::Pointer prefService = berry::Platform::GetServiceRegistry() .GetServiceById(berry::IPreferencesService::ID); berry::IBerryPreferences::Pointer prefs = (prefService->GetSystemPreferences()->Node(VIEW_ID)) .Cast(); assert( prefs ); prefs->OnChanged.AddListener( berry::MessageDelegate1( this , &QmitkDataManagerView::OnPreferencesChanged ) ); //# GUI m_NodeTreeModel = new QmitkDataStorageTreeModel(this->GetDataStorage()); m_NodeTreeModel->setParent( parent ); m_NodeTreeModel->SetPlaceNewNodesOnTop( prefs->GetBool("Place new nodes on top", true) ); m_NodeTreeModel->SetShowHelperObjects( prefs->GetBool("Show helper objects", false) ); m_NodeTreeModel->SetShowNodesContainingNoData( prefs->GetBool("Show nodes containing no data", false) ); m_SurfaceDecimation = prefs->GetBool("Use surface decimation", false); //# Tree View (experimental) m_NodeTreeView = new QTreeView; m_NodeTreeView->setSelectionMode( QAbstractItemView::ExtendedSelection ); m_NodeTreeView->setSelectionBehavior( QAbstractItemView::SelectRows ); m_NodeTreeView->setAlternatingRowColors(true); m_NodeTreeView->setDragEnabled(true); m_NodeTreeView->setDropIndicatorShown(true); m_NodeTreeView->setAcceptDrops(true); m_NodeTreeView->setContextMenuPolicy(Qt::CustomContextMenu); m_NodeTreeView->setModel(m_NodeTreeModel); m_NodeTreeView->setTextElideMode(Qt::ElideMiddle); m_NodeTreeView->installEventFilter(new QmitkNodeTableViewKeyFilter(this)); QObject::connect( m_NodeTreeView, SIGNAL(customContextMenuRequested(const QPoint&)) , this, SLOT(NodeTableViewContextMenuRequested(const QPoint&)) ); QObject::connect( m_NodeTreeModel, SIGNAL(rowsInserted (const QModelIndex&, int, int)) , this, SLOT(NodeTreeViewRowsInserted ( const QModelIndex&, int, int )) ); QObject::connect( m_NodeTreeModel, SIGNAL(rowsRemoved (const QModelIndex&, int, int)) , this, SLOT(NodeTreeViewRowsRemoved( const QModelIndex&, int, int )) ); QObject::connect( m_NodeTreeView->selectionModel() , SIGNAL( selectionChanged ( const QItemSelection &, const QItemSelection & ) ) , this , SLOT( NodeSelectionChanged ( const QItemSelection &, const QItemSelection & ) ) ); //# m_NodeMenu m_NodeMenu = new QMenu(m_NodeTreeView); // # Actions berry::IEditorRegistry* editorRegistry = berry::PlatformUI::GetWorkbench()->GetEditorRegistry(); std::list editors = editorRegistry->GetEditors("*.mitk"); if (editors.size() > 1) { m_ShowInMapper = new QSignalMapper(this); foreach(berry::IEditorDescriptor::Pointer descriptor, editors) { QAction* action = new QAction(QString::fromStdString(descriptor->GetLabel()), this); m_ShowInActions << action; m_ShowInMapper->connect(action, SIGNAL(triggered()), m_ShowInMapper, SLOT(map())); m_ShowInMapper->setMapping(action, QString::fromStdString(descriptor->GetId())); } connect(m_ShowInMapper, SIGNAL(mapped(QString)), this, SLOT(ShowIn(QString))); } QmitkNodeDescriptor* unknownDataNodeDescriptor = QmitkNodeDescriptorManager::GetInstance()->GetUnknownDataNodeDescriptor(); QmitkNodeDescriptor* imageDataNodeDescriptor = QmitkNodeDescriptorManager::GetInstance()->GetDescriptor("Image"); QmitkNodeDescriptor* surfaceDataNodeDescriptor = QmitkNodeDescriptorManager::GetInstance()->GetDescriptor("Surface"); QAction* globalReinitAction = new QAction(QIcon(":/org.mitk.gui.qt.datamanager/Refresh_48.png"), "Global Reinit", this); QObject::connect( globalReinitAction, SIGNAL( triggered(bool) ) , this, SLOT( GlobalReinit(bool) ) ); unknownDataNodeDescriptor->AddAction(globalReinitAction); m_DescriptorActionList.push_back(std::pair(unknownDataNodeDescriptor, globalReinitAction)); QAction* saveAction = new QAction(QIcon(":/org.mitk.gui.qt.datamanager/Save_48.png"), "Save...", this); QObject::connect( saveAction, SIGNAL( triggered(bool) ) , this, SLOT( SaveSelectedNodes(bool) ) ); unknownDataNodeDescriptor->AddAction(saveAction); m_DescriptorActionList.push_back(std::pair(unknownDataNodeDescriptor,saveAction)); QAction* removeAction = new QAction(QIcon(":/org.mitk.gui.qt.datamanager/Remove_48.png"), "Remove", this); QObject::connect( removeAction, SIGNAL( triggered(bool) ) , this, SLOT( RemoveSelectedNodes(bool) ) ); unknownDataNodeDescriptor->AddAction(removeAction); m_DescriptorActionList.push_back(std::pair(unknownDataNodeDescriptor,removeAction)); QAction* reinitAction = new QAction(QIcon(":/org.mitk.gui.qt.datamanager/Refresh_48.png"), "Reinit", this); QObject::connect( reinitAction, SIGNAL( triggered(bool) ) , this, SLOT( ReinitSelectedNodes(bool) ) ); unknownDataNodeDescriptor->AddAction(reinitAction); m_DescriptorActionList.push_back(std::pair(unknownDataNodeDescriptor,reinitAction)); // find contextMenuAction extension points and add them to the node descriptor berry::IExtensionPointService::Pointer extensionPointService = berry::Platform::GetExtensionPointService(); berry::IConfigurationElement::vector cmActions( extensionPointService->GetConfigurationElementsFor("org.mitk.gui.qt.datamanager.contextMenuActions") ); berry::IConfigurationElement::vector::iterator cmActionsIt; std::string cmNodeDescriptorName; std::string cmLabel; std::string cmIcon; std::string cmClass; QmitkNodeDescriptor* tmpDescriptor; QAction* contextMenuAction; QVariant cmActionDataIt; m_ConfElements.clear(); int i=1; for (cmActionsIt = cmActions.begin() ; cmActionsIt != cmActions.end() ; ++cmActionsIt) { cmIcon.erase(); if((*cmActionsIt)->GetAttribute("nodeDescriptorName", cmNodeDescriptorName) && (*cmActionsIt)->GetAttribute("label", cmLabel) && (*cmActionsIt)->GetAttribute("class", cmClass)) { (*cmActionsIt)->GetAttribute("icon", cmIcon); // create context menu entry here tmpDescriptor = QmitkNodeDescriptorManager::GetInstance()->GetDescriptor(QString::fromStdString(cmNodeDescriptorName)); if(!tmpDescriptor) { MITK_WARN << "cannot add action \"" << cmLabel << "\" because descriptor " << cmNodeDescriptorName << " does not exist"; continue; } contextMenuAction = new QAction( QString::fromStdString(cmLabel), parent); tmpDescriptor->AddAction(contextMenuAction); m_DescriptorActionList.push_back(std::pair(tmpDescriptor,contextMenuAction)); m_ConfElements[contextMenuAction] = *cmActionsIt; cmActionDataIt.setValue(i); contextMenuAction->setData( cmActionDataIt ); connect( contextMenuAction, SIGNAL( triggered(bool) ) , this, SLOT( ContextMenuActionTriggered(bool) ) ); ++i; } } m_OpacitySlider = new QSlider; m_OpacitySlider->setMinimum(0); m_OpacitySlider->setMaximum(100); m_OpacitySlider->setOrientation(Qt::Horizontal); QObject::connect( m_OpacitySlider, SIGNAL( valueChanged(int) ) , this, SLOT( OpacityChanged(int) ) ); QLabel* _OpacityLabel = new QLabel("Opacity: "); QHBoxLayout* _OpacityWidgetLayout = new QHBoxLayout; _OpacityWidgetLayout->setContentsMargins(4,4,4,4); _OpacityWidgetLayout->addWidget(_OpacityLabel); _OpacityWidgetLayout->addWidget(m_OpacitySlider); QWidget* _OpacityWidget = new QWidget; _OpacityWidget->setLayout(_OpacityWidgetLayout); QWidgetAction* opacityAction = new QWidgetAction(this); opacityAction ->setDefaultWidget(_OpacityWidget); QObject::connect( opacityAction , SIGNAL( changed() ) , this, SLOT( OpacityActionChanged() ) ); unknownDataNodeDescriptor->AddAction(opacityAction , false); m_DescriptorActionList.push_back(std::pair(unknownDataNodeDescriptor,opacityAction)); m_ColorButton = new QPushButton; m_ColorButton->setSizePolicy(QSizePolicy::Expanding,QSizePolicy::Minimum); //m_ColorButton->setText("Change color"); QObject::connect( m_ColorButton, SIGNAL( clicked() ) , this, SLOT( ColorChanged() ) ); QLabel* _ColorLabel = new QLabel("Color: "); _ColorLabel->setSizePolicy(QSizePolicy::Minimum,QSizePolicy::Minimum); QHBoxLayout* _ColorWidgetLayout = new QHBoxLayout; _ColorWidgetLayout->setContentsMargins(4,4,4,4); _ColorWidgetLayout->addWidget(_ColorLabel); _ColorWidgetLayout->addWidget(m_ColorButton); QWidget* _ColorWidget = new QWidget; _ColorWidget->setLayout(_ColorWidgetLayout); QWidgetAction* colorAction = new QWidgetAction(this); colorAction->setDefaultWidget(_ColorWidget); QObject::connect( colorAction, SIGNAL( changed() ) , this, SLOT( ColorActionChanged() ) ); unknownDataNodeDescriptor->AddAction(colorAction, false); m_DescriptorActionList.push_back(std::pair(unknownDataNodeDescriptor,colorAction)); m_TextureInterpolation = new QAction("Texture Interpolation", this); m_TextureInterpolation->setCheckable ( true ); QObject::connect( m_TextureInterpolation, SIGNAL( changed() ) , this, SLOT( TextureInterpolationChanged() ) ); QObject::connect( m_TextureInterpolation, SIGNAL( toggled(bool) ) , this, SLOT( TextureInterpolationToggled(bool) ) ); imageDataNodeDescriptor->AddAction(m_TextureInterpolation, false); m_DescriptorActionList.push_back(std::pair(imageDataNodeDescriptor,m_TextureInterpolation)); m_SurfaceRepresentation = new QAction("Surface Representation", this); m_SurfaceRepresentation->setMenu(new QMenu); QObject::connect( m_SurfaceRepresentation->menu(), SIGNAL( aboutToShow() ) , this, SLOT( SurfaceRepresentationMenuAboutToShow() ) ); surfaceDataNodeDescriptor->AddAction(m_SurfaceRepresentation, false); m_DescriptorActionList.push_back(std::pair(surfaceDataNodeDescriptor, m_SurfaceRepresentation)); QAction* showOnlySelectedNodes = new QAction(QIcon(":/org.mitk.gui.qt.datamanager/ShowSelectedNode_48.png") , "Show only selected nodes", this); QObject::connect( showOnlySelectedNodes, SIGNAL( triggered(bool) ) , this, SLOT( ShowOnlySelectedNodes(bool) ) ); unknownDataNodeDescriptor->AddAction(showOnlySelectedNodes); m_DescriptorActionList.push_back(std::pair(unknownDataNodeDescriptor, showOnlySelectedNodes)); QAction* toggleSelectedVisibility = new QAction(QIcon(":/org.mitk.gui.qt.datamanager/InvertShowSelectedNode_48.png") , "Toggle visibility", this); QObject::connect( toggleSelectedVisibility, SIGNAL( triggered(bool) ) , this, SLOT( ToggleVisibilityOfSelectedNodes(bool) ) ); unknownDataNodeDescriptor->AddAction(toggleSelectedVisibility); m_DescriptorActionList.push_back(std::pair(unknownDataNodeDescriptor,toggleSelectedVisibility)); QAction* actionShowInfoDialog = new QAction(QIcon(":/org.mitk.gui.qt.datamanager/ShowDataInfo_48.png") , "Details...", this); QObject::connect( actionShowInfoDialog, SIGNAL( triggered(bool) ) , this, SLOT( ShowInfoDialogForSelectedNodes(bool) ) ); unknownDataNodeDescriptor->AddAction(actionShowInfoDialog); m_DescriptorActionList.push_back(std::pair(unknownDataNodeDescriptor,actionShowInfoDialog)); //obsolete... //QAction* otsuFilterAction = new QAction("Apply Otsu Filter", this); //QObject::connect( otsuFilterAction, SIGNAL( triggered(bool) ) // , this, SLOT( OtsuFilter(bool) ) ); // //Otsu filter does not work properly, remove it temporarily // imageDataNodeDescriptor->AddAction(otsuFilterAction); // m_DescriptorActionList.push_back(std::pair(imageDataNodeDescriptor,otsuFilterAction)); QGridLayout* _DndFrameWidgetLayout = new QGridLayout; _DndFrameWidgetLayout->addWidget(m_NodeTreeView, 0, 0); _DndFrameWidgetLayout->setContentsMargins(0,0,0,0); m_DndFrameWidget = new QmitkDnDFrameWidget(m_Parent); m_DndFrameWidget->setLayout(_DndFrameWidgetLayout); QVBoxLayout* layout = new QVBoxLayout(parent); layout->addWidget(m_DndFrameWidget); layout->setContentsMargins(0,0,0,0); m_Parent->setLayout(layout); } void QmitkDataManagerView::SetFocus() { } void QmitkDataManagerView::ContextMenuActionTriggered( bool ) { QAction* action = qobject_cast ( sender() ); std::map::iterator it = m_ConfElements.find( action ); if( it == m_ConfElements.end() ) { MITK_WARN << "associated conf element for action " << action->text().toStdString() << " not found"; return; } berry::IConfigurationElement::Pointer confElem = it->second; mitk::IContextMenuAction* contextMenuAction = confElem->CreateExecutableExtension("class"); std::string className; std::string smoothed; confElem->GetAttribute("class", className); confElem->GetAttribute("smoothed", smoothed); if(className == "QmitkThresholdAction") { contextMenuAction->SetDataStorage(this->GetDataStorage()); } else if(className == "QmitkOtsuAction") { contextMenuAction->SetDataStorage(this->GetDataStorage()); } else if(className == "QmitkCreatePolygonModelAction") { contextMenuAction->SetDataStorage(this->GetDataStorage()); if(smoothed == "false") { contextMenuAction->SetSmoothed(false); } else { contextMenuAction->SetSmoothed(true); } contextMenuAction->SetDecimated(m_SurfaceDecimation); } else if(className == "QmitkStatisticsAction") { contextMenuAction->SetFunctionality(this); } contextMenuAction->Run( this->GetCurrentSelection() ); // run the action } void QmitkDataManagerView::OnPreferencesChanged(const berry::IBerryPreferences* prefs) { if( m_NodeTreeModel->GetPlaceNewNodesOnTopFlag() != prefs->GetBool("Place new nodes on top", true) ) m_NodeTreeModel->SetPlaceNewNodesOnTop( !m_NodeTreeModel->GetPlaceNewNodesOnTopFlag() ); if( m_NodeTreeModel->GetShowHelperObjectsFlag()!= prefs->GetBool("Show helper objects", false) ) m_NodeTreeModel->SetShowHelperObjects( !m_NodeTreeModel->GetShowHelperObjectsFlag() ); if( m_NodeTreeModel->GetShowNodesContainingNoDataFlag()!= prefs->GetBool("Show nodes containing no data", false) ) m_NodeTreeModel->SetShowNodesContainingNoData( !m_NodeTreeModel->GetShowNodesContainingNoDataFlag() ); m_NodeTreeView->expandAll(); m_SurfaceDecimation = prefs->GetBool("Use surface decimation", false); this->GlobalReinit(); } void QmitkDataManagerView::NodeTableViewContextMenuRequested( const QPoint & pos ) { QModelIndex selected = m_NodeTreeView->indexAt ( pos ); mitk::DataNode::Pointer node = m_NodeTreeModel->GetNode(selected); QList selectedNodes = this->GetCurrentSelection(); if(!selectedNodes.isEmpty()) { m_NodeMenu->clear(); QList actions; if(selectedNodes.size() == 1 ) { actions = QmitkNodeDescriptorManager::GetInstance()->GetActions(node); for(QList::iterator it = actions.begin(); it != actions.end(); ++it) { (*it)->setData(QVariant::fromValue(node.GetPointer())); } } else actions = QmitkNodeDescriptorManager::GetInstance()->GetActions(selectedNodes); if (!m_ShowInActions.isEmpty()) { QMenu* showInMenu = m_NodeMenu->addMenu("Show In"); showInMenu->addActions(m_ShowInActions); } m_NodeMenu->addActions(actions); m_NodeMenu->popup(QCursor::pos()); } } void QmitkDataManagerView::OpacityChanged(int value) { mitk::DataNode* node = m_NodeTreeModel->GetNode(m_NodeTreeView->selectionModel()->currentIndex()); if(node) { float opacity = static_cast(value)/100.0f; node->SetFloatProperty("opacity", opacity); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } } void QmitkDataManagerView::OpacityActionChanged() { mitk::DataNode* node = m_NodeTreeModel->GetNode(m_NodeTreeView->selectionModel()->currentIndex()); if(node) { float opacity = 0.0; if(node->GetFloatProperty("opacity", opacity)) { m_OpacitySlider->setValue(static_cast(opacity*100)); } } } void QmitkDataManagerView::ColorChanged() { mitk::DataNode* node = m_NodeTreeModel->GetNode(m_NodeTreeView->selectionModel()->currentIndex()); if(node) { QColor color = QColorDialog::getColor(); m_ColorButton->setAutoFillBackground(true); node->SetProperty("color",mitk::ColorProperty::New(color.red()/255.0,color.green()/255.0,color.blue()/255.0)); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } } void QmitkDataManagerView::ColorActionChanged() { mitk::DataNode* node = m_NodeTreeModel->GetNode(m_NodeTreeView->selectionModel()->currentIndex()); if(node) { mitk::Color color; mitk::ColorProperty::Pointer colorProp; node->GetProperty(colorProp,"color"); if(colorProp.IsNull()) return; color = colorProp->GetValue(); QString styleSheet = "background-color:rgb("; styleSheet.append(QString::number(color[0]*255)); styleSheet.append(","); styleSheet.append(QString::number(color[1]*255)); styleSheet.append(","); styleSheet.append(QString::number(color[2]*255)); styleSheet.append(")"); m_ColorButton->setStyleSheet(styleSheet); } } void QmitkDataManagerView::TextureInterpolationChanged() { mitk::DataNode* node = m_NodeTreeModel->GetNode(m_NodeTreeView->selectionModel()->currentIndex()); if(node) { bool textureInterpolation = false; node->GetBoolProperty("texture interpolation", textureInterpolation); m_TextureInterpolation->setChecked(textureInterpolation); } } void QmitkDataManagerView::TextureInterpolationToggled( bool checked ) { mitk::DataNode* node = m_NodeTreeModel->GetNode(m_NodeTreeView->selectionModel()->currentIndex()); if(node) { node->SetBoolProperty("texture interpolation", checked); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } } void QmitkDataManagerView::SurfaceRepresentationMenuAboutToShow() { mitk::DataNode* node = m_NodeTreeModel->GetNode(m_NodeTreeView->selectionModel()->currentIndex()); if(!node) return; mitk::EnumerationProperty* representationProp = dynamic_cast (node->GetProperty("material.representation")); if(!representationProp) return; // clear menu m_SurfaceRepresentation->menu()->clear(); QAction* tmp; // create menu entries for(mitk::EnumerationProperty::EnumConstIterator it=representationProp->Begin(); it!=representationProp->End() ; it++) { tmp = m_SurfaceRepresentation->menu()->addAction(QString::fromStdString(it->second)); tmp->setCheckable(true); if(it->second == representationProp->GetValueAsString()) { tmp->setChecked(true); } QObject::connect( tmp, SIGNAL( triggered(bool) ) , this, SLOT( SurfaceRepresentationActionToggled(bool) ) ); } } void QmitkDataManagerView::SurfaceRepresentationActionToggled( bool /*checked*/ ) { mitk::DataNode* node = m_NodeTreeModel->GetNode(m_NodeTreeView->selectionModel()->currentIndex()); if(!node) return; mitk::EnumerationProperty* representationProp = dynamic_cast (node->GetProperty("material.representation")); if(!representationProp) return; QAction* senderAction = qobject_cast ( QObject::sender() ); if(!senderAction) return; std::string activatedItem = senderAction->text().toStdString(); if ( activatedItem != representationProp->GetValueAsString() ) { if ( representationProp->IsValidEnumerationValue( activatedItem ) ) { representationProp->SetValue( activatedItem ); representationProp->InvokeEvent( itk::ModifiedEvent() ); representationProp->Modified(); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } } } void QmitkDataManagerView::SaveSelectedNodes( bool ) { QModelIndexList indexesOfSelectedRows = m_NodeTreeView->selectionModel()->selectedRows(); mitk::DataNode* node = 0; unsigned int indexesOfSelectedRowsSize = indexesOfSelectedRows.size(); for (unsigned int i = 0; iGetNode(indexesOfSelectedRows.at(i)); // if node is not defined or if the node contains geometry data do not remove it if ( node != 0 ) { mitk::BaseData::Pointer data = node->GetData(); if (data.IsNotNull()) { QString error; try { mitk::QmitkIOUtil::SaveBaseDataWithDialog( data.GetPointer(), node->GetName().c_str(), m_Parent ); } catch(std::exception& e) { error = e.what(); } catch(...) { error = "Unknown error occured"; } if( !error.isEmpty() ) QMessageBox::critical( m_Parent, "Error saving...", error ); } } } } void QmitkDataManagerView::ReinitSelectedNodes( bool ) { mitk::IRenderWindowPart* renderWindow = this->GetRenderWindowPart(); if (renderWindow == NULL) renderWindow = this->OpenRenderWindowPart(false); QList selectedNodes = this->GetCurrentSelection(); foreach(mitk::DataNode::Pointer node, selectedNodes) { mitk::BaseData::Pointer basedata = node->GetData(); if ( basedata.IsNotNull() && basedata->GetTimeGeometry()->IsValid() ) { renderWindow->GetRenderingManager()->InitializeViews( basedata->GetTimeGeometry(), mitk::RenderingManager::REQUEST_UPDATE_ALL, true ); renderWindow->GetRenderingManager()->RequestUpdateAll(); } } } void QmitkDataManagerView::RemoveSelectedNodes( bool ) { QModelIndexList indexesOfSelectedRows = m_NodeTreeView->selectionModel()->selectedRows(); if(indexesOfSelectedRows.size() < 1) { return; } std::vector selectedNodes; mitk::DataNode* node = 0; QString question = tr("Do you really want to remove "); for (QModelIndexList::iterator it = indexesOfSelectedRows.begin() ; it != indexesOfSelectedRows.end(); it++) { node = m_NodeTreeModel->GetNode(*it); // if node is not defined or if the node contains geometry data do not remove it if ( node != 0 /*& strcmp(node->GetData()->GetNameOfClass(), "Geometry2DData") != 0*/ ) { selectedNodes.push_back(node); question.append(QString::fromStdString(node->GetName())); question.append(", "); } } // remove the last two characters = ", " question = question.remove(question.size()-2, 2); question.append(" from data storage?"); QMessageBox::StandardButton answerButton = QMessageBox::question( m_Parent , tr("DataManager") , question , QMessageBox::Yes | QMessageBox::No, QMessageBox::Yes); if(answerButton == QMessageBox::Yes) { for (std::vector::iterator it = selectedNodes.begin() ; it != selectedNodes.end(); it++) { node = *it; this->GetDataStorage()->Remove(node); this->GlobalReinit(false); } } } void QmitkDataManagerView::MakeAllNodesInvisible( bool ) { QList nodes = m_NodeTreeModel->GetNodeSet(); foreach(mitk::DataNode::Pointer node, nodes) { node->SetVisibility(false); } //mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkDataManagerView::ShowOnlySelectedNodes( bool ) { QList selectedNodes = this->GetCurrentSelection(); QList allNodes = m_NodeTreeModel->GetNodeSet(); foreach(mitk::DataNode::Pointer node, allNodes) { node->SetVisibility(selectedNodes.contains(node)); } //mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkDataManagerView::ToggleVisibilityOfSelectedNodes( bool ) { QList selectedNodes = this->GetCurrentSelection(); bool isVisible = false; foreach(mitk::DataNode::Pointer node, selectedNodes) { isVisible = false; node->GetBoolProperty("visible", isVisible); node->SetVisibility(!isVisible); } mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkDataManagerView::ShowInfoDialogForSelectedNodes( bool ) { QList selectedNodes = this->GetCurrentSelection(); QmitkInfoDialog _QmitkInfoDialog(selectedNodes, this->m_Parent); _QmitkInfoDialog.exec(); } void QmitkDataManagerView::Load( bool ) { QStringList fileNames = QFileDialog::getOpenFileNames(NULL, "Load data", "", mitk::CoreObjectFactory::GetInstance()->GetFileExtensions()); for ( QStringList::Iterator it = fileNames.begin(); it != fileNames.end(); ++it ) { FileOpen((*it).toAscii(), 0); } } void QmitkDataManagerView::FileOpen( const char * fileName, mitk::DataNode* parentNode ) { mitk::DataNodeFactory::Pointer factory = mitk::DataNodeFactory::New(); try { factory->SetFileName( fileName ); QApplication::setOverrideCursor( QCursor(Qt::WaitCursor) ); factory->Update(); for ( unsigned int i = 0 ; i < factory->GetNumberOfOutputs( ); ++i ) { mitk::DataNode::Pointer node = factory->GetOutput( i ); if ( ( node.IsNotNull() ) && ( node->GetData() != NULL ) ) { this->GetDataStorage()->Add(node, parentNode); mitk::BaseData::Pointer basedata = node->GetData(); mitk::RenderingManager::GetInstance()->InitializeViews( basedata->GetTimeGeometry(), mitk::RenderingManager::REQUEST_UPDATE_ALL, true ); //mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } } } catch ( itk::ExceptionObject & ex ) { itkGenericOutputMacro( << "Exception during file open: " << ex ); } QApplication::restoreOverrideCursor(); } QItemSelectionModel *QmitkDataManagerView::GetDataNodeSelectionModel() const { return m_NodeTreeView->selectionModel(); } void QmitkDataManagerView::GlobalReinit( bool ) { mitk::IRenderWindowPart* renderWindow = this->GetRenderWindowPart(); if (renderWindow == NULL) renderWindow = this->OpenRenderWindowPart(false); // no render window available if (renderWindow == NULL) return; // get all nodes that have not set "includeInBoundingBox" to false mitk::NodePredicateNot::Pointer pred = mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("includeInBoundingBox" , mitk::BoolProperty::New(false))); mitk::DataStorage::SetOfObjects::ConstPointer rs = this->GetDataStorage()->GetSubset(pred); // calculate bounding geometry of these nodes - mitk::TimeSlicedGeometry::Pointer bounds = this->GetDataStorage()->ComputeBoundingGeometry3D(rs, "visible"); + mitk::TimeGeometry::Pointer bounds = this->GetDataStorage()->ComputeBoundingGeometry3D(rs, "visible"); // initialize the views to the bounding geometry renderWindow->GetRenderingManager()->InitializeViews(bounds); } void QmitkDataManagerView::OtsuFilter( bool ) { QList selectedNodes = this->GetCurrentSelection(); mitk::Image::Pointer mitkImage = 0; foreach(mitk::DataNode::Pointer node, selectedNodes) { mitkImage = dynamic_cast( node->GetData() ); if(mitkImage.IsNull()) continue; try { // get selected mitk image const unsigned short dim = 3; typedef short InputPixelType; typedef unsigned char OutputPixelType; typedef itk::Image< InputPixelType, dim > InputImageType; typedef itk::Image< OutputPixelType, dim > OutputImageType; typedef itk::OtsuThresholdImageFilter< InputImageType, OutputImageType > FilterType; FilterType::Pointer filter = FilterType::New(); filter->SetOutsideValue( 1 ); filter->SetInsideValue( 0 ); InputImageType::Pointer itkImage; mitk::CastToItkImage(mitkImage, itkImage); filter->SetInput( itkImage ); filter->Update(); mitk::DataNode::Pointer resultNode = mitk::DataNode::New(); std::string nameOfResultImage = node->GetName(); nameOfResultImage.append("Otsu"); resultNode->SetProperty("name", mitk::StringProperty::New(nameOfResultImage) ); resultNode->SetProperty("binary", mitk::BoolProperty::New(true) ); resultNode->SetData( mitk::ImportItkImage ( filter->GetOutput() ) ); this->GetDataStorage()->Add(resultNode, node); } catch( std::exception& err ) { MITK_ERROR(this->GetClassName()) << err.what(); } } } void QmitkDataManagerView::NodeTreeViewRowsRemoved ( const QModelIndex & /*parent*/, int /*start*/, int /*end*/ ) { m_CurrentRowCount = m_NodeTreeModel->rowCount(); } void QmitkDataManagerView::NodeTreeViewRowsInserted( const QModelIndex & parent, int, int ) { m_NodeTreeView->setExpanded(parent, true); // a new row was inserted if( m_CurrentRowCount == 0 && m_NodeTreeModel->rowCount() == 1 ) { this->OpenRenderWindowPart(); m_CurrentRowCount = m_NodeTreeModel->rowCount(); /* std::vector nodes = m_NodeTreeModel->GetNodeSet(); if(nodes.size() == 1) { QModelIndex treeIndex = m_NodeTreeModel->GetIndex(nodes.front()); m_NodeTreeView->selectionModel()->setCurrentIndex( treeIndex, QItemSelectionModel::ClearAndSelect ); } */ } } void QmitkDataManagerView::NodeSelectionChanged( const QItemSelection & /*selected*/, const QItemSelection & /*deselected*/ ) { QList nodes = m_NodeTreeModel->GetNodeSet(); foreach(mitk::DataNode::Pointer node, nodes) { if ( node.IsNotNull() ) node->SetBoolProperty("selected", false); } nodes.clear(); nodes = this->GetCurrentSelection(); foreach(mitk::DataNode::Pointer node, nodes) { if ( node.IsNotNull() ) node->SetBoolProperty("selected", true); } //changing the selection does NOT require any rendering processes! //mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkDataManagerView::ShowIn(const QString &editorId) { berry::IWorkbenchPage::Pointer page = this->GetSite()->GetPage(); berry::IEditorInput::Pointer input(new mitk::DataStorageEditorInput(this->GetDataStorageReference())); page->OpenEditor(input, editorId.toStdString(), false, berry::IWorkbenchPage::MATCH_ID); } mitk::IRenderWindowPart* QmitkDataManagerView::OpenRenderWindowPart(bool activatedEditor) { if (activatedEditor) { return this->GetRenderWindowPart(QmitkAbstractView::ACTIVATE | QmitkAbstractView::OPEN); } else { return this->GetRenderWindowPart(QmitkAbstractView::BRING_TO_FRONT | QmitkAbstractView::OPEN); } } diff --git a/Plugins/org.mitk.gui.qt.imagenavigator/src/internal/QmitkImageNavigatorView.cpp b/Plugins/org.mitk.gui.qt.imagenavigator/src/internal/QmitkImageNavigatorView.cpp index 7724581405..844c8d5262 100644 --- a/Plugins/org.mitk.gui.qt.imagenavigator/src/internal/QmitkImageNavigatorView.cpp +++ b/Plugins/org.mitk.gui.qt.imagenavigator/src/internal/QmitkImageNavigatorView.cpp @@ -1,398 +1,400 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "QmitkImageNavigatorView.h" #include #include +#include + #include const std::string QmitkImageNavigatorView::VIEW_ID = "org.mitk.views.imagenavigator"; QmitkImageNavigatorView::QmitkImageNavigatorView() : m_AxialStepper(0) , m_SagittalStepper(0) , m_FrontalStepper(0) , m_TimeStepper(0) , m_Parent(0) , m_IRenderWindowPart(0) { } QmitkImageNavigatorView::~QmitkImageNavigatorView() { } void QmitkImageNavigatorView::CreateQtPartControl(QWidget *parent) { // create GUI widgets m_Parent = parent; m_Controls.setupUi(parent); m_Controls.m_SliceNavigatorAxial->SetInverseDirection(true); connect(m_Controls.m_XWorldCoordinateSpinBox, SIGNAL(valueChanged(double)), this, SLOT(OnMillimetreCoordinateValueChanged())); connect(m_Controls.m_YWorldCoordinateSpinBox, SIGNAL(valueChanged(double)), this, SLOT(OnMillimetreCoordinateValueChanged())); connect(m_Controls.m_ZWorldCoordinateSpinBox, SIGNAL(valueChanged(double)), this, SLOT(OnMillimetreCoordinateValueChanged())); m_Parent->setEnabled(false); mitk::IRenderWindowPart* renderPart = this->GetRenderWindowPart(); this->RenderWindowPartActivated(renderPart); } void QmitkImageNavigatorView::SetFocus () { m_Controls.m_XWorldCoordinateSpinBox->setFocus(); } void QmitkImageNavigatorView::RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart) { if (this->m_IRenderWindowPart != renderWindowPart) { this->m_IRenderWindowPart = renderWindowPart; this->m_Parent->setEnabled(true); QmitkRenderWindow* renderWindow = renderWindowPart->GetRenderWindow("axial"); if (renderWindow) { if (m_AxialStepper) m_AxialStepper->deleteLater(); m_AxialStepper = new QmitkStepperAdapter(m_Controls.m_SliceNavigatorAxial, renderWindow->GetSliceNavigationController()->GetSlice(), "sliceNavigatorAxialFromSimpleExample"); m_Controls.m_SliceNavigatorAxial->setEnabled(true); m_Controls.m_AxialLabel->setEnabled(true); m_Controls.m_ZWorldCoordinateSpinBox->setEnabled(true); connect(m_AxialStepper, SIGNAL(Refetch()), this, SLOT(OnRefetch())); } else { m_Controls.m_SliceNavigatorAxial->setEnabled(false); m_Controls.m_AxialLabel->setEnabled(false); m_Controls.m_ZWorldCoordinateSpinBox->setEnabled(false); } renderWindow = renderWindowPart->GetRenderWindow("sagittal"); if (renderWindow) { if (m_SagittalStepper) m_SagittalStepper->deleteLater(); m_SagittalStepper = new QmitkStepperAdapter(m_Controls.m_SliceNavigatorSagittal, renderWindow->GetSliceNavigationController()->GetSlice(), "sliceNavigatorSagittalFromSimpleExample"); m_Controls.m_SliceNavigatorSagittal->setEnabled(true); m_Controls.m_SagittalLabel->setEnabled(true); m_Controls.m_YWorldCoordinateSpinBox->setEnabled(true); connect(m_SagittalStepper, SIGNAL(Refetch()), this, SLOT(OnRefetch())); } else { m_Controls.m_SliceNavigatorSagittal->setEnabled(false); m_Controls.m_SagittalLabel->setEnabled(false); m_Controls.m_YWorldCoordinateSpinBox->setEnabled(false); } renderWindow = renderWindowPart->GetRenderWindow("coronal"); if (renderWindow) { if (m_FrontalStepper) m_FrontalStepper->deleteLater(); m_FrontalStepper = new QmitkStepperAdapter(m_Controls.m_SliceNavigatorFrontal, renderWindow->GetSliceNavigationController()->GetSlice(), "sliceNavigatorFrontalFromSimpleExample"); m_Controls.m_SliceNavigatorFrontal->setEnabled(true); m_Controls.m_CoronalLabel->setEnabled(true); m_Controls.m_XWorldCoordinateSpinBox->setEnabled(true); connect(m_FrontalStepper, SIGNAL(Refetch()), this, SLOT(OnRefetch())); } else { m_Controls.m_SliceNavigatorFrontal->setEnabled(false); m_Controls.m_CoronalLabel->setEnabled(false); m_Controls.m_XWorldCoordinateSpinBox->setEnabled(false); } mitk::SliceNavigationController* timeController = renderWindowPart->GetTimeNavigationController(); if (timeController) { if (m_TimeStepper) m_TimeStepper->deleteLater(); m_TimeStepper = new QmitkStepperAdapter(m_Controls.m_SliceNavigatorTime, timeController->GetTime(), "sliceNavigatorTimeFromSimpleExample"); m_Controls.m_SliceNavigatorTime->setEnabled(true); m_Controls.m_TimeLabel->setEnabled(true); } else { m_Controls.m_SliceNavigatorTime->setEnabled(false); m_Controls.m_TimeLabel->setEnabled(false); } } } void QmitkImageNavigatorView::RenderWindowPartDeactivated(mitk::IRenderWindowPart* /*renderWindowPart*/) { m_IRenderWindowPart = 0; m_Parent->setEnabled(false); } int QmitkImageNavigatorView::GetSizeFlags(bool width) { if(!width) { return berry::Constants::MIN | berry::Constants::MAX | berry::Constants::FILL; } else { return 0; } } int QmitkImageNavigatorView::ComputePreferredSize(bool width, int /*availableParallel*/, int /*availablePerpendicular*/, int preferredResult) { if(width==false) { return 200; } else { return preferredResult; } } int QmitkImageNavigatorView::GetClosestAxisIndex(mitk::Vector3D normal) { // cos(theta) = normal . axis // cos(theta) = (a, b, c) . (d, e, f) // cos(theta) = (a, b, c) . (1, 0, 0) = a // cos(theta) = (a, b, c) . (0, 1, 0) = b // cos(theta) = (a, b, c) . (0, 0, 1) = c double absCosThetaWithAxis[3]; for (int i = 0; i < 3; i++) { absCosThetaWithAxis[i] = fabs(normal[i]); } int largestIndex = 0; double largestValue = absCosThetaWithAxis[0]; for (int i = 1; i < 3; i++) { if (absCosThetaWithAxis[i] > largestValue) { largestValue = absCosThetaWithAxis[i]; largestIndex = i; } } return largestIndex; } void QmitkImageNavigatorView::SetBorderColors() { if (m_IRenderWindowPart) { QmitkRenderWindow* renderWindow = m_IRenderWindowPart->GetRenderWindow("axial"); if (renderWindow) { mitk::PlaneGeometry::ConstPointer geometry = renderWindow->GetSliceNavigationController()->GetCurrentPlaneGeometry(); if (geometry.IsNotNull()) { mitk::Vector3D normal = geometry->GetNormal(); int axis = this->GetClosestAxisIndex(normal); this->SetBorderColor(axis, QString("red")); } } renderWindow = m_IRenderWindowPart->GetRenderWindow("sagittal"); if (renderWindow) { mitk::PlaneGeometry::ConstPointer geometry = renderWindow->GetSliceNavigationController()->GetCurrentPlaneGeometry(); if (geometry.IsNotNull()) { mitk::Vector3D normal = geometry->GetNormal(); int axis = this->GetClosestAxisIndex(normal); this->SetBorderColor(axis, QString("green")); } } renderWindow = m_IRenderWindowPart->GetRenderWindow("coronal"); if (renderWindow) { mitk::PlaneGeometry::ConstPointer geometry = renderWindow->GetSliceNavigationController()->GetCurrentPlaneGeometry(); if (geometry.IsNotNull()) { mitk::Vector3D normal = geometry->GetNormal(); int axis = this->GetClosestAxisIndex(normal); this->SetBorderColor(axis, QString("blue")); } } } } void QmitkImageNavigatorView::SetBorderColor(int axis, QString colorAsStyleSheetString) { if (axis == 0) { this->SetBorderColor(m_Controls.m_XWorldCoordinateSpinBox, colorAsStyleSheetString); } else if (axis == 1) { this->SetBorderColor(m_Controls.m_YWorldCoordinateSpinBox, colorAsStyleSheetString); } else if (axis == 2) { this->SetBorderColor(m_Controls.m_ZWorldCoordinateSpinBox, colorAsStyleSheetString); } } void QmitkImageNavigatorView::SetBorderColor(QDoubleSpinBox *spinBox, QString colorAsStyleSheetString) { assert(spinBox); spinBox->setStyleSheet(QString("border: 2px solid ") + colorAsStyleSheetString + ";"); } void QmitkImageNavigatorView::SetStepSizes() { this->SetStepSize(0); this->SetStepSize(1); this->SetStepSize(2); } void QmitkImageNavigatorView::SetStepSize(int axis) { if (m_IRenderWindowPart) { - mitk::Geometry3D::ConstPointer geometry = m_IRenderWindowPart->GetActiveQmitkRenderWindow()->GetSliceNavigationController()->GetInputWorldGeometry(); + mitk::Geometry3D::ConstPointer geometry = m_IRenderWindowPart->GetActiveQmitkRenderWindow()->GetSliceNavigationController()->GetInputWorldGeometry3D(); if (geometry.IsNotNull()) { mitk::Point3D crossPositionInIndexCoordinates; mitk::Point3D crossPositionInIndexCoordinatesPlus1; mitk::Point3D crossPositionInMillimetresPlus1; mitk::Vector3D transformedAxisDirection; mitk::Point3D crossPositionInMillimetres = m_IRenderWindowPart->GetSelectedPosition(); geometry->WorldToIndex(crossPositionInMillimetres, crossPositionInIndexCoordinates); crossPositionInIndexCoordinatesPlus1 = crossPositionInIndexCoordinates; crossPositionInIndexCoordinatesPlus1[axis] += 1; geometry->IndexToWorld(crossPositionInIndexCoordinatesPlus1, crossPositionInMillimetresPlus1); transformedAxisDirection = crossPositionInMillimetresPlus1 - crossPositionInMillimetres; int closestAxisInMillimetreSpace = this->GetClosestAxisIndex(transformedAxisDirection); double stepSize = transformedAxisDirection.GetNorm(); this->SetStepSize(closestAxisInMillimetreSpace, stepSize); } } } void QmitkImageNavigatorView::SetStepSize(int axis, double stepSize) { if (axis == 0) { m_Controls.m_XWorldCoordinateSpinBox->setSingleStep(stepSize); } else if (axis == 1) { m_Controls.m_YWorldCoordinateSpinBox->setSingleStep(stepSize); } else if (axis == 2) { m_Controls.m_ZWorldCoordinateSpinBox->setSingleStep(stepSize); } } void QmitkImageNavigatorView::OnMillimetreCoordinateValueChanged() { if (m_IRenderWindowPart) { - mitk::Geometry3D::ConstPointer geometry = m_IRenderWindowPart->GetActiveQmitkRenderWindow()->GetSliceNavigationController()->GetInputWorldGeometry(); + mitk::TimeGeometry::ConstPointer geometry = m_IRenderWindowPart->GetActiveQmitkRenderWindow()->GetSliceNavigationController()->GetInputWorldTimeGeometry(); if (geometry.IsNotNull()) { mitk::Point3D positionInWorldCoordinates; positionInWorldCoordinates[0] = m_Controls.m_XWorldCoordinateSpinBox->value(); positionInWorldCoordinates[1] = m_Controls.m_YWorldCoordinateSpinBox->value(); positionInWorldCoordinates[2] = m_Controls.m_ZWorldCoordinateSpinBox->value(); m_IRenderWindowPart->SetSelectedPosition(positionInWorldCoordinates); } } } void QmitkImageNavigatorView::OnRefetch() { if (m_IRenderWindowPart) { - mitk::Geometry3D::ConstPointer geometry = m_IRenderWindowPart->GetActiveQmitkRenderWindow()->GetSliceNavigationController()->GetInputWorldGeometry(); + mitk::Geometry3D::ConstPointer geometry = m_IRenderWindowPart->GetActiveQmitkRenderWindow()->GetSliceNavigationController()->GetInputWorldGeometry3D(); if (geometry.IsNotNull()) { - mitk::Geometry3D::BoundsArrayType bounds = geometry->GetBounds(); + mitk::BoundingBox::BoundsArrayType bounds = geometry->GetBounds(); mitk::Point3D cornerPoint1InIndexCoordinates; cornerPoint1InIndexCoordinates[0] = bounds[0]; cornerPoint1InIndexCoordinates[1] = bounds[2]; cornerPoint1InIndexCoordinates[2] = bounds[4]; mitk::Point3D cornerPoint2InIndexCoordinates; cornerPoint2InIndexCoordinates[0] = bounds[1]; cornerPoint2InIndexCoordinates[1] = bounds[3]; cornerPoint2InIndexCoordinates[2] = bounds[5]; if (!geometry->GetImageGeometry()) { cornerPoint1InIndexCoordinates[0] += 0.5; cornerPoint1InIndexCoordinates[1] += 0.5; cornerPoint1InIndexCoordinates[2] += 0.5; cornerPoint2InIndexCoordinates[0] -= 0.5; cornerPoint2InIndexCoordinates[1] -= 0.5; cornerPoint2InIndexCoordinates[2] -= 0.5; } mitk::Point3D crossPositionInWorldCoordinates = m_IRenderWindowPart->GetSelectedPosition(); mitk::Point3D cornerPoint1InWorldCoordinates; mitk::Point3D cornerPoint2InWorldCoordinates; geometry->IndexToWorld(cornerPoint1InIndexCoordinates, cornerPoint1InWorldCoordinates); geometry->IndexToWorld(cornerPoint2InIndexCoordinates, cornerPoint2InWorldCoordinates); m_Controls.m_XWorldCoordinateSpinBox->blockSignals(true); m_Controls.m_YWorldCoordinateSpinBox->blockSignals(true); m_Controls.m_ZWorldCoordinateSpinBox->blockSignals(true); m_Controls.m_XWorldCoordinateSpinBox->setMinimum(std::min(cornerPoint1InWorldCoordinates[0], cornerPoint2InWorldCoordinates[0])); m_Controls.m_YWorldCoordinateSpinBox->setMinimum(std::min(cornerPoint1InWorldCoordinates[1], cornerPoint2InWorldCoordinates[1])); m_Controls.m_ZWorldCoordinateSpinBox->setMinimum(std::min(cornerPoint1InWorldCoordinates[2], cornerPoint2InWorldCoordinates[2])); m_Controls.m_XWorldCoordinateSpinBox->setMaximum(std::max(cornerPoint1InWorldCoordinates[0], cornerPoint2InWorldCoordinates[0])); m_Controls.m_YWorldCoordinateSpinBox->setMaximum(std::max(cornerPoint1InWorldCoordinates[1], cornerPoint2InWorldCoordinates[1])); m_Controls.m_ZWorldCoordinateSpinBox->setMaximum(std::max(cornerPoint1InWorldCoordinates[2], cornerPoint2InWorldCoordinates[2])); m_Controls.m_XWorldCoordinateSpinBox->setValue(crossPositionInWorldCoordinates[0]); m_Controls.m_YWorldCoordinateSpinBox->setValue(crossPositionInWorldCoordinates[1]); m_Controls.m_ZWorldCoordinateSpinBox->setValue(crossPositionInWorldCoordinates[2]); m_Controls.m_XWorldCoordinateSpinBox->blockSignals(false); m_Controls.m_YWorldCoordinateSpinBox->blockSignals(false); m_Controls.m_ZWorldCoordinateSpinBox->blockSignals(false); } this->SetBorderColors(); } } diff --git a/Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/QmitkStdMultiWidgetEditor.cpp b/Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/QmitkStdMultiWidgetEditor.cpp index 17332a58d4..674a9f6ca6 100644 --- a/Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/QmitkStdMultiWidgetEditor.cpp +++ b/Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/QmitkStdMultiWidgetEditor.cpp @@ -1,472 +1,471 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "QmitkStdMultiWidgetEditor.h" #include #include #include #include #include #include #include #include #include #include #include #include #include #include class QmitkStdMultiWidgetEditorPrivate { public: QmitkStdMultiWidgetEditorPrivate(); ~QmitkStdMultiWidgetEditorPrivate(); QmitkStdMultiWidget* m_StdMultiWidget; QmitkMouseModeSwitcher* m_MouseModeToolbar; std::string m_FirstBackgroundColor; std::string m_SecondBackgroundColor; bool m_MenuWidgetsEnabled; berry::IPartListener::Pointer m_PartListener; QHash m_RenderWindows; }; struct QmitkStdMultiWidgetPartListener : public berry::IPartListener { berryObjectMacro(QmitkStdMultiWidgetPartListener) QmitkStdMultiWidgetPartListener(QmitkStdMultiWidgetEditorPrivate* dd) : d(dd) {} Events::Types GetPartEventTypes() const { return Events::CLOSED | Events::HIDDEN | Events::VISIBLE; } void PartClosed (berry::IWorkbenchPartReference::Pointer partRef) { if (partRef->GetId() == QmitkStdMultiWidgetEditor::EDITOR_ID) { QmitkStdMultiWidgetEditor::Pointer stdMultiWidgetEditor = partRef->GetPart(false).Cast(); if (d->m_StdMultiWidget == stdMultiWidgetEditor->GetStdMultiWidget()) { d->m_StdMultiWidget->RemovePlanesFromDataStorage(); stdMultiWidgetEditor->RequestActivateMenuWidget(false); } } } void PartHidden (berry::IWorkbenchPartReference::Pointer partRef) { if (partRef->GetId() == QmitkStdMultiWidgetEditor::EDITOR_ID) { QmitkStdMultiWidgetEditor::Pointer stdMultiWidgetEditor = partRef->GetPart(false).Cast(); if (d->m_StdMultiWidget == stdMultiWidgetEditor->GetStdMultiWidget()) { d->m_StdMultiWidget->RemovePlanesFromDataStorage(); stdMultiWidgetEditor->RequestActivateMenuWidget(false); } } } void PartVisible (berry::IWorkbenchPartReference::Pointer partRef) { if (partRef->GetId() == QmitkStdMultiWidgetEditor::EDITOR_ID) { QmitkStdMultiWidgetEditor::Pointer stdMultiWidgetEditor = partRef->GetPart(false).Cast(); if (d->m_StdMultiWidget == stdMultiWidgetEditor->GetStdMultiWidget()) { d->m_StdMultiWidget->AddPlanesToDataStorage(); stdMultiWidgetEditor->RequestActivateMenuWidget(true); } } } private: QmitkStdMultiWidgetEditorPrivate* const d; }; QmitkStdMultiWidgetEditorPrivate::QmitkStdMultiWidgetEditorPrivate() : m_StdMultiWidget(0), m_MouseModeToolbar(0) , m_MenuWidgetsEnabled(false) , m_PartListener(new QmitkStdMultiWidgetPartListener(this)) {} QmitkStdMultiWidgetEditorPrivate::~QmitkStdMultiWidgetEditorPrivate() { } const std::string QmitkStdMultiWidgetEditor::EDITOR_ID = "org.mitk.editors.stdmultiwidget"; QmitkStdMultiWidgetEditor::QmitkStdMultiWidgetEditor() : d(new QmitkStdMultiWidgetEditorPrivate) { } QmitkStdMultiWidgetEditor::~QmitkStdMultiWidgetEditor() { this->GetSite()->GetPage()->RemovePartListener(d->m_PartListener); } QmitkStdMultiWidget* QmitkStdMultiWidgetEditor::GetStdMultiWidget() { return d->m_StdMultiWidget; } QmitkRenderWindow *QmitkStdMultiWidgetEditor::GetActiveQmitkRenderWindow() const { if (d->m_StdMultiWidget) return d->m_StdMultiWidget->GetRenderWindow1(); return 0; } QHash QmitkStdMultiWidgetEditor::GetQmitkRenderWindows() const { return d->m_RenderWindows; } QmitkRenderWindow *QmitkStdMultiWidgetEditor::GetQmitkRenderWindow(const QString &id) const { static bool alreadyWarned = false; if(!alreadyWarned) { MITK_WARN(id == "transversal") << "QmitkStdMultiWidgetEditor::GetRenderWindow(\"transversal\") is deprecated. Use \"axial\" instead."; alreadyWarned = true; } if (d->m_RenderWindows.contains(id)) return d->m_RenderWindows[id]; return 0; } mitk::Point3D QmitkStdMultiWidgetEditor::GetSelectedPosition(const QString & /*id*/) const { return d->m_StdMultiWidget->GetCrossPosition(); } void QmitkStdMultiWidgetEditor::SetSelectedPosition(const mitk::Point3D &pos, const QString &/*id*/) { d->m_StdMultiWidget->MoveCrossToPosition(pos); } void QmitkStdMultiWidgetEditor::EnableDecorations(bool enable, const QStringList &decorations) { if (decorations.isEmpty() || decorations.contains(DECORATION_BORDER)) { enable ? d->m_StdMultiWidget->EnableColoredRectangles() : d->m_StdMultiWidget->DisableColoredRectangles(); } if (decorations.isEmpty() || decorations.contains(DECORATION_LOGO)) { enable ? d->m_StdMultiWidget->EnableDepartmentLogo() : d->m_StdMultiWidget->DisableDepartmentLogo(); } if (decorations.isEmpty() || decorations.contains(DECORATION_MENU)) { d->m_StdMultiWidget->ActivateMenuWidget(enable); } if (decorations.isEmpty() || decorations.contains(DECORATION_BACKGROUND)) { enable ? d->m_StdMultiWidget->EnableGradientBackground() : d->m_StdMultiWidget->DisableGradientBackground(); } } bool QmitkStdMultiWidgetEditor::IsDecorationEnabled(const QString &decoration) const { if (decoration == DECORATION_BORDER) { return d->m_StdMultiWidget->IsColoredRectanglesEnabled(); } else if (decoration == DECORATION_LOGO) { return d->m_StdMultiWidget->IsColoredRectanglesEnabled(); } else if (decoration == DECORATION_MENU) { return d->m_StdMultiWidget->IsMenuWidgetEnabled(); } else if (decoration == DECORATION_BACKGROUND) { return d->m_StdMultiWidget->GetGradientBackgroundFlag(); } return false; } QStringList QmitkStdMultiWidgetEditor::GetDecorations() const { QStringList decorations; decorations << DECORATION_BORDER << DECORATION_LOGO << DECORATION_MENU << DECORATION_BACKGROUND; return decorations; } mitk::SlicesRotator* QmitkStdMultiWidgetEditor::GetSlicesRotator() const { return d->m_StdMultiWidget->GetSlicesRotator(); } mitk::SlicesSwiveller* QmitkStdMultiWidgetEditor::GetSlicesSwiveller() const { return d->m_StdMultiWidget->GetSlicesSwiveller(); } void QmitkStdMultiWidgetEditor::EnableSlicingPlanes(bool enable) { d->m_StdMultiWidget->SetWidgetPlanesVisibility(enable); } bool QmitkStdMultiWidgetEditor::IsSlicingPlanesEnabled() const { mitk::DataNode::Pointer node = this->d->m_StdMultiWidget->GetWidgetPlane1(); if (node.IsNotNull()) { bool visible = false; node->GetVisibility(visible, 0); return visible; } else { return false; } } void QmitkStdMultiWidgetEditor::EnableLinkedNavigation(bool enable) { enable ? d->m_StdMultiWidget->EnableNavigationControllerEventListening() : d->m_StdMultiWidget->DisableNavigationControllerEventListening(); } bool QmitkStdMultiWidgetEditor::IsLinkedNavigationEnabled() const { return d->m_StdMultiWidget->IsCrosshairNavigationEnabled(); } void QmitkStdMultiWidgetEditor::CreateQtPartControl(QWidget* parent) { if (d->m_StdMultiWidget == 0) { QHBoxLayout* layout = new QHBoxLayout(parent); layout->setContentsMargins(0,0,0,0); if (d->m_MouseModeToolbar == NULL) { d->m_MouseModeToolbar = new QmitkMouseModeSwitcher(parent); // delete by Qt via parent layout->addWidget(d->m_MouseModeToolbar); } d->m_StdMultiWidget = new QmitkStdMultiWidget(parent); d->m_RenderWindows.insert("transversal", d->m_StdMultiWidget->GetRenderWindow1()); d->m_RenderWindows.insert("axial", d->m_StdMultiWidget->GetRenderWindow1()); d->m_RenderWindows.insert("sagittal", d->m_StdMultiWidget->GetRenderWindow2()); d->m_RenderWindows.insert("coronal", d->m_StdMultiWidget->GetRenderWindow3()); d->m_RenderWindows.insert("3d", d->m_StdMultiWidget->GetRenderWindow4()); d->m_MouseModeToolbar->setMouseModeSwitcher( d->m_StdMultiWidget->GetMouseModeSwitcher() ); connect( d->m_MouseModeToolbar, SIGNAL( MouseModeSelected(mitk::MouseModeSwitcher::MouseMode) ), d->m_StdMultiWidget, SLOT( MouseModeSelected(mitk::MouseModeSwitcher::MouseMode) ) ); layout->addWidget(d->m_StdMultiWidget); mitk::DataStorage::Pointer ds = this->GetDataStorage(); // Tell the multiWidget which (part of) the tree to render d->m_StdMultiWidget->SetDataStorage(ds); // Initialize views as axial, sagittal, coronar to all data objects in DataStorage // (from top-left to bottom) - mitk::TimeSlicedGeometry::Pointer geo = ds->ComputeBoundingGeometry3D(ds->GetAll()); + mitk::TimeGeometry::Pointer geo = ds->ComputeBoundingGeometry3D(ds->GetAll()); mitk::RenderingManager::GetInstance()->InitializeViews(geo); // Initialize bottom-right view as 3D view d->m_StdMultiWidget->GetRenderWindow4()->GetRenderer()->SetMapperID( mitk::BaseRenderer::Standard3D ); // Enable standard handler for levelwindow-slider d->m_StdMultiWidget->EnableStandardLevelWindow(); // Add the displayed views to the tree to see their positions // in 2D and 3D d->m_StdMultiWidget->AddDisplayPlaneSubTree(); d->m_StdMultiWidget->EnableNavigationControllerEventListening(); // Store the initial visibility status of the menu widget. d->m_MenuWidgetsEnabled = d->m_StdMultiWidget->IsMenuWidgetEnabled(); this->GetSite()->GetPage()->AddPartListener(d->m_PartListener); berry::IPreferences::Pointer prefs = this->GetPreferences(); this->OnPreferencesChanged(dynamic_cast(prefs.GetPointer())); this->RequestUpdate(); } } void QmitkStdMultiWidgetEditor::OnPreferencesChanged(const berry::IBerryPreferences* prefs) { // Enable change of logo. If no DepartmentLogo was set explicitly, MBILogo is used. // Set new department logo by prefs->Set("DepartmentLogo", "PathToImage"); // If no logo was set for this plug-in specifically, walk the parent preference nodes // and lookup a logo value there. const berry::IPreferences* currentNode = prefs; while(currentNode) { std::vector keys = currentNode->Keys(); bool logoFound = false; for( std::size_t i = 0; i < keys.size(); ++i ) { if( keys[i] == "DepartmentLogo") { std::string departmentLogoLocation = currentNode->Get("DepartmentLogo", ""); if (departmentLogoLocation.empty()) { d->m_StdMultiWidget->DisableDepartmentLogo(); } else { // we need to disable the logo first, otherwise setting a new logo will have // no effect due to how mitkManufacturerLogo works... d->m_StdMultiWidget->DisableDepartmentLogo(); d->m_StdMultiWidget->SetDepartmentLogoPath(departmentLogoLocation.c_str()); d->m_StdMultiWidget->EnableDepartmentLogo(); } logoFound = true; break; } } if (logoFound) break; currentNode = currentNode->Parent().GetPointer(); } // preferences for gradient background float color = 255.0; QString firstColorName = QString::fromStdString (prefs->GetByteArray("first background color", "")); QColor firstColor(firstColorName); mitk::Color upper; if (firstColorName=="") // default values { upper[0] = 0.1; upper[1] = 0.1; upper[2] = 0.1; } else { upper[0] = firstColor.red() / color; upper[1] = firstColor.green() / color; upper[2] = firstColor.blue() / color; } QString secondColorName = QString::fromStdString (prefs->GetByteArray("second background color", "")); QColor secondColor(secondColorName); mitk::Color lower; if (secondColorName=="") // default values { lower[0] = 0.5; lower[1] = 0.5; lower[2] = 0.5; } else { lower[0] = secondColor.red() / color; lower[1] = secondColor.green() / color; lower[2] = secondColor.blue() / color; } d->m_StdMultiWidget->SetGradientBackgroundColors(upper, lower); d->m_StdMultiWidget->EnableGradientBackground(); // Set preferences respecting zooming and padding bool constrainedZooming = prefs->GetBool("Use constrained zooming and padding", false); mitk::RenderingManager::GetInstance()->SetConstrainedPaddingZooming(constrainedZooming); mitk::NodePredicateNot::Pointer pred = mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("includeInBoundingBox" , mitk::BoolProperty::New(false))); mitk::DataStorage::SetOfObjects::ConstPointer rs = this->GetDataStorage()->GetSubset(pred); // calculate bounding geometry of these nodes - mitk::TimeSlicedGeometry::Pointer bounds = this->GetDataStorage()->ComputeBoundingGeometry3D(rs, "visible"); - + mitk::TimeGeometry::Pointer bounds = this->GetDataStorage()->ComputeBoundingGeometry3D(rs, "visible"); // initialize the views to the bounding geometry mitk::RenderingManager::GetInstance()->InitializeViews(bounds); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); // level window setting bool showLevelWindowWidget = prefs->GetBool("Show level/window widget", true); if (showLevelWindowWidget) { d->m_StdMultiWidget->EnableStandardLevelWindow(); } else { d->m_StdMultiWidget->DisableStandardLevelWindow(); } // mouse modes toolbar bool newMode = prefs->GetBool("PACS like mouse interaction", false); d->m_MouseModeToolbar->setVisible( newMode ); d->m_StdMultiWidget->GetMouseModeSwitcher()->SetInteractionScheme( newMode ? mitk::MouseModeSwitcher::PACS : mitk::MouseModeSwitcher::MITK ); } void QmitkStdMultiWidgetEditor::SetFocus() { if (d->m_StdMultiWidget != 0) d->m_StdMultiWidget->setFocus(); } void QmitkStdMultiWidgetEditor::RequestActivateMenuWidget(bool on) { if (d->m_StdMultiWidget) { if (on) { d->m_StdMultiWidget->ActivateMenuWidget(d->m_MenuWidgetsEnabled); } else { d->m_MenuWidgetsEnabled = d->m_StdMultiWidget->IsMenuWidgetEnabled(); d->m_StdMultiWidget->ActivateMenuWidget(false); } } }