diff --git a/Plugins/org.mitk.gui.qt.photoacousticsimulation/plugin.xml b/Plugins/org.mitk.gui.qt.photoacousticsimulation/plugin.xml
index a3111992dc..f2f7c5e572 100644
--- a/Plugins/org.mitk.gui.qt.photoacousticsimulation/plugin.xml
+++ b/Plugins/org.mitk.gui.qt.photoacousticsimulation/plugin.xml
@@ -1,11 +1,11 @@
diff --git a/Plugins/org.mitk.gui.qt.photoacousticsimulation/src/internal/PASimulatorControls.ui b/Plugins/org.mitk.gui.qt.photoacousticsimulation/src/internal/PASimulatorControls.ui
index 1784565069..b472de41b5 100644
--- a/Plugins/org.mitk.gui.qt.photoacousticsimulation/src/internal/PASimulatorControls.ui
+++ b/Plugins/org.mitk.gui.qt.photoacousticsimulation/src/internal/PASimulatorControls.ui
@@ -1,4829 +1,4881 @@
PASimulatorControls
0
0
- 430
+ 433
655
0
0
+
+ Qt::NoContextMenu
+
QmitkTemplate
+
+
+ :/org.mitk.gui.qt.photoacousticsimulation/resources/icon.xpm:/org.mitk.gui.qt.photoacousticsimulation/resources/icon.xpm
+
-
0
0
415
600
- 0
+ 3
Generator
10
10
391
581
-
+
0
0
+
+
+ 391
+ 581
+
+
0
0
0
0
-
75
true
Volume parameters
-
-
-
0
0
0
25
16777215
25
Tissue name:
-
0
0
0
25
16777215
25
Size x:
-
0
0
0
25
16777215
25
50
false
Spacing:
-
-
0
0
0
25
16777215
25
PhotoacousticTissue
-
-
0
0
0
25
16777215
25
1
9999
70
-
0
0
0
25
16777215
25
y:
-
0
0
0
25
16777215
25
9999
100
-
0
0
0
25
16777215
25
z:
-
0
0
0
25
16777215
25
9999
70
-
0
0
0
25
16777215
25
voxels
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
2
0.010000000000000
0.060000000000000
-
0
0
0
25
16777215
25
cm
-
Qt::Horizontal
40
20
-
-
-
0
0
0
25
16777215
25
Randomize:
-
0
0
0
25
16777215
25
Partial volume effects:
-
0
0
0
25
16777215
25
Custom seed:
-
-
0
0
0
25
16777215
25
true
-
true
0
0
0
25
16777215
25
-
true
0
0
0
25
16777215
25
-
-
-
0
0
0
25
16777215
25
sigma:
-
0
0
0
25
16777215
25
0
100.000000000000000
0.010000000000000
2.000000000000000
-
0
0
0
25
16777215
25
%
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
sigma:
-
0
0
0
25
16777215
25
10.000000000000000
0.100000000000000
1.000000000000000
-
0
0
0
25
16777215
25
voxels
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
999999999
170704057
-
Qt::Horizontal
40
20
-
-
Generate batch file output:
-
false
-
-
-
Number of volumes to generate:
-
1
9999999
1
-
Qt::Horizontal
40
20
-
-
Save generated tissue path:
-
0
0
50
0
50
16777215
open
-
-
-
Path to MitkMcxyz binary:
-
0
0
50
0
50
16777215
open
-
-
-
Number of Photons (x1000):
-
0
999999999
1
100000
-
+
+
+ 0
+ 0
+
+
Generate Tissue
-
Qt::Vertical
20
40
Tissue
10
10
391
581
-
+
0
0
+
+
+ 391
+ 581
+
+
0
0
0
0
-
-
-
0
0
0
25
16777215
25
11
75
false
true
false
Air Parameters
-
0
0
0
25
16777215
25
50
false
Thickness:
-
0
0
0
10
16777215
10
11
75
true
-
0
0
0
25
16777215
25
75
false
true
false
Background Parameters
-
0
0
0
25
16777215
25
Absorption coefficient:
-
0
0
0
25
16777215
25
Scattering coefficient:
-
0
0
0
25
16777215
25
Anisotropy facor:
-
0
0
0
10
16777215
10
11
75
true
-
0
0
0
25
16777215
25
75
false
true
false
Skin Parameters
-
0
0
0
25
16777215
25
Thickness:
-
0
0
0
25
16777215
25
Absorption coefficient:
-
0
0
0
25
16777215
25
Scattering coefficient:
-
0
0
0
25
16777215
25
Anisotropy facor:
-
0
0
0
10
16777215
10
11
75
true
-
0
0
0
25
16777215
25
75
false
true
false
Fat Parameters
-
0
0
0
25
16777215
25
Anisotropy facor:
-
0
0
0
25
16777215
25
Scattering coefficient:
-
0
0
0
25
16777215
25
Absorption coefficient:
-
0
0
0
25
16777215
25
Body fat percentage:
-
-
0
0
0
25
16777215
25
11
75
true
-
-
0
0
0
25
16777215
25
0.100000000000000
1.800000000000000
-
0
0
0
25
16777215
25
mm
-
Qt::Horizontal
40
20
-
0
0
0
10
16777215
10
11
75
true
-
0
0
0
25
16777215
25
75
true
-
-
0
0
0
25
16777215
25
0.100000000000000
0.100000000000000
-
0
0
0
25
16777215
25
per cm
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
1000.000000000000000
15.000000000000000
-
0
0
0
25
16777215
25
per cm
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
1.000000000000000
0.010000000000000
0.900000000000000
-
Qt::Horizontal
40
20
-
0
0
0
10
16777215
10
11
75
true
-
0
0
0
25
16777215
25
75
true
-
-
0
0
0
25
16777215
25
0.100000000000000
0.400000000000000
-
0
0
0
25
16777215
25
mm
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
0.100000000000000
3.000000000000000
-
0
0
0
25
16777215
25
per cm
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
1000.000000000000000
20.000000000000000
-
0
0
0
25
16777215
25
per cm
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
1.000000000000000
0.010000000000000
0.900000000000000
-
Qt::Horizontal
40
20
-
0
0
0
10
16777215
10
11
75
true
-
0
0
0
25
16777215
25
75
true
-
-
0
0
0
25
16777215
25
0
0.100000000000000
10.000000000000000
-
0
0
0
25
16777215
25
%
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
0.100000000000000
0.200000000000000
-
0
0
0
25
16777215
25
per cm
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
1000.000000000000000
18.000000000000000
-
0
0
0
25
16777215
25
per cm
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
1.000000000000000
0.010000000000000
0.900000000000000
-
Qt::Horizontal
40
20
-
Qt::Vertical
20
40
Vessels
10
10
391
581
+
+
+ 0
+ 0
+
+
+
+
+ 391
+ 581
+
+
0
0
0
0
-
75
true
Vessel Parameters
-
-
-
0
25
16777215
25
The number of bloos vessels to generate
Count:
Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter
-
0
25
16777215
25
The radius of the blood vessels in mm
Radius:
-
0
25
16777215
25
the absorption coefficient refers to the number of absorption events per centimeter.
Absorption:
-
0
25
16777215
25
The reduced scattering coefficient.
It refers to the amount of scattering events per centimeter.
Scattering:
-
0
25
16777215
25
The anisotropy factor is the probability of a photon to not change its direction after a scattering event.
Anisotropy factor:
-
0
25
16777215
25
The bifurcation frequency determines how often the vessel should bifurcate.
The vessel will bifurcate after meandering a mean of the specified amount of voxels.
When given a value of 0, the vessel will never bifurcate.
Bifurcation frequency:
-
0
25
16777215
25
The curvedness it a setting to determine how much the vessel is allowed to bend during creation.
A value of 0 refers to no bending at all and a value of 5 is the maximum.
Curvedness:
-
-
-
0
25
16777215
25
The minimum number of blood vessels
1
1
-
0
25
16777215
25
to
-
0
25
16777215
25
The maximum number of blood vessels
7
-
0
25
16777215
25
Vessels
-
Qt::Horizontal
QSizePolicy::Expanding
60
20
-
-
0
25
16777215
25
The minimum radius
0.600000000000000
-
0
25
16777215
25
to
-
0
25
16777215
25
The maximum radius
5.000000000000000
-
0
25
16777215
25
mm
-
Qt::Horizontal
QSizePolicy::Expanding
60
20
-
-
0
25
16777215
25
The minimum absorption coefficient
2.000000000000000
-
0
25
16777215
25
to
-
0
25
16777215
25
The maximum absorption coefficient
10.000000000000000
-
0
25
16777215
25
per cm
-
Qt::Horizontal
QSizePolicy::Expanding
60
20
-
-
0
25
16777215
25
The minimum scattering
2
0.000000000000000
999.000000000000000
1.000000000000000
15.000000000000000
-
0
25
16777215
25
to
-
0
25
16777215
25
The minimum scattering
2
0.000000000000000
999.000000000000000
1.000000000000000
15.000000000000000
-
0
25
16777215
25
per cm
-
Qt::Horizontal
QSizePolicy::Expanding
60
20
-
-
0
25
16777215
25
The minimum anisotropy factor
2
0.000000000000000
1.000000000000000
0.100000000000000
0.900000000000000
-
0
25
16777215
25
to
-
0
25
16777215
25
The maximum anisotropy factor
2
0.000000000000000
1.000000000000000
0.100000000000000
0.900000000000000
-
Qt::Horizontal
QSizePolicy::Expanding
60
20
-
-
0
25
16777215
25
The bifurcation frequency determines how often the vessel should bifurcate.
The vessel will bifurcate after meandering a mean of the specified amount of voxels.
When given a value of 0, the vessel will never bifurcate.
0
1.000000000000000
999999999.000000000000000
1.000000000000000
50.000000000000000
-
0
25
16777215
25
voxels
-
Qt::Horizontal
QSizePolicy::Expanding
60
20
-
-
0
25
16777215
25
The minimal curvedness of the vessel.
A value of 0 refers to no bending at all and a value of 5 is the maximum.
5.000000000000000
0.100000000000000
-
0
25
16777215
25
to
-
0
25
16777215
25
The maximal curvedness of the vessel.
A value of 0 refers to no bending at all and a value of 5 is the maximum.
5.000000000000000
0.010000000000000
1.000000000000000
-
0
25
16777215
25
units
-
Qt::Horizontal
QSizePolicy::Expanding
60
20
-
Qt::Vertical
20
40
- widgetAdvancedSettings
- label_13
Monte Carlo
10
10
391
581
-
+
0
0
+
+
+ 391
+ 581
+
+
0
0
0
0
-
75
true
Monte Carlo Parameters
-
0
25
16777215
25
50
false
General:
-
-
-
0
0
0
25
16777215
25
Mcflag:
-
0
0
0
25
16777215
25
Launchflag:
-
0
0
0
25
16777215
25
Boundaryflag:
-
-
-
0
0
0
25
16777215
25
1
4
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
0
0
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
1
2
-
Qt::Horizontal
40
20
-
0
25
16777215
25
50
false
Initial launch point:
-
-
0
25
16777215
25
x
-
0
25
16777215
25
4
1000000.000000000000000
0.000000000000000
-
0
25
16777215
25
y
-
0
25
16777215
25
4
1000000.000000000000000
0.000000000000000
-
0
25
16777215
25
z
-
0
25
16777215
25
4
1000000.000000000000000
0.000000000000000
-
Qt::Horizontal
40
20
-
0
25
16777215
25
50
false
Focus point:
-
-
0
25
16777215
25
x
-
0
25
16777215
25
4
1000000.000000000000000
0.000000000000000
-
0
25
16777215
25
y
-
0
25
16777215
25
4
1000000.000000000000000
0.000000000000000
-
0
25
16777215
25
z
-
0
25
16777215
25
4
1000000.000000000000000
0.000000000000000
-
Qt::Horizontal
40
20
-
0
25
16777215
25
50
false
Trajectory vector:
-
-
0
25
16777215
25
x
-
0
25
16777215
25
4
1000000.000000000000000
0.000000000000000
-
0
25
16777215
25
y
-
0
25
16777215
25
4
1000000.000000000000000
0.342000000000000
-
0
25
16777215
25
z
-
0
25
16777215
25
4
1000000.000000000000000
0.939700000000000
-
Qt::Horizontal
40
20
-
-
-
radius:
-
waist:
-
-
-
4
1000.000000000000000
0.500000000000000
-
Qt::Horizontal
40
20
-
-
4
1000.000000000000000
0.010000000000000
-
Qt::Horizontal
40
20
-
Qt::Vertical
20
40
Wavelength
10
10
391
581
-
+
0
0
+
+
+ 391
+ 581
+
+
+
+ Qt::NoContextMenu
+
0
0
0
0
-
75
true
Adjust physical properties by wavelength
-
false
16777215
150
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
<html><head><meta name="qrichtext" content="1" /><style type="text/css">
p, li { white-space: pre-wrap; }
</style></head><body style=" font-family:'Ubuntu'; font-size:11pt; font-weight:400; font-style:normal;">
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">This widget enables the adjustment of the physical properties of the tissue according to a selected wavelength of the light and the oxygen saturation of the blood.</p>
<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><br /></p>
<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">The algorithm and measurements were provided by the publication <span style=" font-weight:600;">Optical properties of biological tissues: a review </span>by Steve L. Jacques.</p></body></html>
-
-
-
0
0
0
25
16777215
25
Wavelength:
-
0
0
0
25
16777215
25
Vessel oxygen saturation:
-
-
-
0
0
0
25
16777215
25
0
300.000000000000000
1000.000000000000000
650.000000000000000
-
Qt::Horizontal
40
20
-
-
0
0
0
25
16777215
25
0
100.000000000000000
75.000000000000000
-
0
0
0
25
16777215
25
%
-
Qt::Horizontal
40
20
-
Adjust tissue properties
-
Qt::Vertical
20
40
-
+
+
+