diff --git a/Modules/Multilabel/mitkLabelSetImageIO.cpp b/Modules/Multilabel/mitkLabelSetImageIO.cpp index 6206af7b18..55e8526f9d 100644 --- a/Modules/Multilabel/mitkLabelSetImageIO.cpp +++ b/Modules/Multilabel/mitkLabelSetImageIO.cpp @@ -1,694 +1,698 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #ifndef __mitkLabelSetImageWriter__cpp #define __mitkLabelSetImageWriter__cpp #include "mitkBasePropertySerializer.h" #include "mitkIOMimeTypes.h" #include "mitkLabelSetImageIO.h" #include "mitkLabelSetImageConverter.h" // itk #include "itkMetaDataDictionary.h" #include "itkMetaDataObject.h" #include "itkNrrdImageIO.h" #include "itkImageFileWriter.h" #include "itkImageFileReader.h" #include "mitkImageAccessByItk.h" #include "tinyxml.h" namespace mitk { LabelSetImageIO::LabelSetImageIO() : AbstractFileIO(LabelSetImage::GetStaticNameOfClass(), IOMimeTypes::NRRD_MIMETYPE(), "MITK Multilabel Image") { AbstractFileWriter::SetRanking(10); AbstractFileReader::SetRanking(10); this->RegisterService(); } IFileIO::ConfidenceLevel LabelSetImageIO::GetWriterConfidenceLevel() const { if (AbstractFileIO::GetWriterConfidenceLevel() == Unsupported) return Unsupported; const LabelSetImage* input = static_cast(this->GetInput()); if (input) return Supported; else return Unsupported; } void LabelSetImageIO::Write() { ValidateOutputLocation(); const LabelSetImage* input = static_cast(this->GetInput()); const std::string& locale = "C"; const std::string& currLocale = setlocale( LC_ALL, NULL ); if ( locale.compare(currLocale)!=0 ) { try { setlocale(LC_ALL, locale.c_str()); } catch(...) { mitkThrow() << "Could not set locale " << currLocale; } } mitk::Image::Pointer inputVector = mitk::LabelSetImageConverter::ConvertLabelSetImageToImage(input); // image write if ( inputVector.IsNull() ) { mitkThrow() << "Cannot write non-image data"; } itk::NrrdImageIO::Pointer nrrdImageIo = itk::NrrdImageIO::New(); // Clone the image geometry, because we might have to change it // for writing purposes BaseGeometry::Pointer geometry = inputVector->GetGeometry()->Clone(); // Check if geometry information will be lost if (inputVector->GetDimension() == 2 && !geometry->Is2DConvertable()) { MITK_WARN << "Saving a 2D image with 3D geometry information. Geometry information will be lost! You might consider using Convert2Dto3DImageFilter before saving."; // set matrix to identity mitk::AffineTransform3D::Pointer affTrans = mitk::AffineTransform3D::New(); affTrans->SetIdentity(); mitk::Vector3D spacing = geometry->GetSpacing(); mitk::Point3D origin = geometry->GetOrigin(); geometry->SetIndexToWorldTransform(affTrans); geometry->SetSpacing(spacing); geometry->SetOrigin(origin); } LocalFile localFile(this); const std::string path = localFile.GetFileName(); MITK_INFO << "Writing image: " << path << std::endl; try { // Implementation of writer using itkImageIO directly. This skips the use // of templated itkImageFileWriter, which saves the multiplexing on MITK side. const unsigned int dimension = inputVector->GetDimension(); const unsigned int* const dimensions = inputVector->GetDimensions(); const mitk::PixelType pixelType = inputVector->GetPixelType(); const mitk::Vector3D mitkSpacing = geometry->GetSpacing(); const mitk::Point3D mitkOrigin = geometry->GetOrigin(); // Due to templating in itk, we are forced to save a 4D spacing and 4D Origin, // though they are not supported in MITK itk::Vector spacing4D; spacing4D[0] = mitkSpacing[0]; spacing4D[1] = mitkSpacing[1]; spacing4D[2] = mitkSpacing[2]; spacing4D[3] = 1; // There is no support for a 4D spacing. However, we should have a valid value here itk::Vector origin4D; origin4D[0] = mitkOrigin[0]; origin4D[1] = mitkOrigin[1]; origin4D[2] = mitkOrigin[2]; origin4D[3] = 0; // There is no support for a 4D origin. However, we should have a valid value here // Set the necessary information for imageIO nrrdImageIo->SetNumberOfDimensions(dimension); nrrdImageIo->SetPixelType(pixelType.GetPixelType()); nrrdImageIo->SetComponentType(pixelType.GetComponentType() < PixelComponentUserType ? static_cast(pixelType.GetComponentType()) : itk::ImageIOBase::UNKNOWNCOMPONENTTYPE); nrrdImageIo->SetNumberOfComponents(pixelType.GetNumberOfComponents()); itk::ImageIORegion ioRegion(dimension); for (unsigned int i = 0; i < dimension; i++) { nrrdImageIo->SetDimensions(i, dimensions[i]); nrrdImageIo->SetSpacing(i, spacing4D[i]); nrrdImageIo->SetOrigin(i, origin4D[i]); mitk::Vector3D mitkDirection; mitkDirection.SetVnlVector(geometry->GetIndexToWorldTransform()->GetMatrix().GetVnlMatrix().get_column(i)); itk::Vector direction4D; direction4D[0] = mitkDirection[0]; direction4D[1] = mitkDirection[1]; direction4D[2] = mitkDirection[2]; // MITK only supports a 3x3 direction matrix. Due to templating in itk, however, we must // save a 4x4 matrix for 4D images. in this case, add an homogneous component to the matrix. if (i == 3) { direction4D[3] = 1; // homogenous component } else { direction4D[3] = 0; } vnl_vector axisDirection(dimension); for (unsigned int j = 0; j < dimension; j++) { axisDirection[j] = direction4D[j] / spacing4D[i]; } nrrdImageIo->SetDirection(i, axisDirection); ioRegion.SetSize(i, inputVector->GetLargestPossibleRegion().GetSize(i)); ioRegion.SetIndex(i, inputVector->GetLargestPossibleRegion().GetIndex(i)); } //use compression if available nrrdImageIo->UseCompressionOn(); nrrdImageIo->SetIORegion(ioRegion); nrrdImageIo->SetFileName(path); // label set specific meta data char keybuffer[512]; char valbuffer[512]; sprintf(keybuffer, "modality"); sprintf(valbuffer, "org.mitk.image.multilabel"); itk::EncapsulateMetaData(nrrdImageIo->GetMetaDataDictionary(), std::string(keybuffer), std::string(valbuffer)); sprintf(keybuffer, "layers"); sprintf(valbuffer, "%1d", input->GetNumberOfLayers()); itk::EncapsulateMetaData(nrrdImageIo->GetMetaDataDictionary(), std::string(keybuffer), std::string(valbuffer)); for (unsigned int layerIdx = 0; layerIdxGetNumberOfLayers(); layerIdx++) { sprintf(keybuffer, "layer_%03d", layerIdx); // layer idx sprintf(valbuffer, "%1d", input->GetNumberOfLabels(layerIdx)); // number of labels for the layer itk::EncapsulateMetaData(nrrdImageIo->GetMetaDataDictionary(), std::string(keybuffer), std::string(valbuffer)); mitk::LabelSet::LabelContainerConstIteratorType iter = input->GetLabelSet(layerIdx)->IteratorConstBegin(); unsigned int count(0); while (iter != input->GetLabelSet(layerIdx)->IteratorConstEnd()) { std::auto_ptr document; document.reset(new TiXmlDocument()); TiXmlDeclaration* decl = new TiXmlDeclaration("1.0", "", ""); // TODO what to write here? encoding? etc.... document->LinkEndChild(decl); TiXmlElement * labelElem = GetLabelAsTiXmlElement(iter->second); document->LinkEndChild(labelElem); TiXmlPrinter printer; printer.SetIndent(""); printer.SetLineBreak(""); document->Accept(&printer); sprintf(keybuffer, "org.mitk.label_%03u_%05u", layerIdx, count); itk::EncapsulateMetaData(nrrdImageIo->GetMetaDataDictionary(), std::string(keybuffer), printer.Str()); ++iter; ++count; } } // end label set specific meta data ImageReadAccessor imageAccess(inputVector); nrrdImageIo->Write(imageAccess.GetData()); } catch (const std::exception& e) { mitkThrow() << e.what(); } // end image write try { setlocale(LC_ALL, currLocale.c_str()); } catch(...) { mitkThrow() << "Could not reset locale " << currLocale; } } IFileIO::ConfidenceLevel LabelSetImageIO::GetReaderConfidenceLevel() const { if (AbstractFileIO::GetReaderConfidenceLevel() == Unsupported) return Unsupported; const std::string fileName = this->GetLocalFileName(); itk::NrrdImageIO::Pointer io = itk::NrrdImageIO::New(); io->SetFileName(fileName); io->ReadImageInformation(); itk::MetaDataDictionary imgMetaDataDictionary = io->GetMetaDataDictionary(); std::string value (""); itk::ExposeMetaData (imgMetaDataDictionary, "modality", value); if (value.compare("org.mitk.image.multilabel") == 0) { return Supported; } else return Unsupported; } std::vector LabelSetImageIO::Read() { const std::string& locale = "C"; const std::string& currLocale = setlocale( LC_ALL, NULL ); if ( locale.compare(currLocale)!=0 ) { try { setlocale(LC_ALL, locale.c_str()); } catch(...) { mitkThrow() << "Could not set locale."; } } // begin regular image loading, adapted from mitkItkImageIO itk::NrrdImageIO::Pointer nrrdImageIO = itk::NrrdImageIO::New(); Image::Pointer image = Image::New(); const unsigned int MINDIM = 2; const unsigned int MAXDIM = 4; const std::string path = this->GetLocalFileName(); MITK_INFO << "loading " << path << " via itk::ImageIOFactory... " << std::endl; // Check to see if we can read the file given the name or prefix if (path.empty()) { mitkThrow() << "Empty filename in mitk::ItkImageIO "; } // Got to allocate space for the image. Determine the characteristics of // the image. nrrdImageIO->SetFileName(path); nrrdImageIO->ReadImageInformation(); unsigned int ndim = nrrdImageIO->GetNumberOfDimensions(); if (ndim < MINDIM || ndim > MAXDIM) { MITK_WARN << "Sorry, only dimensions 2, 3 and 4 are supported. The given file has " << ndim << " dimensions! Reading as 4D."; ndim = MAXDIM; } itk::ImageIORegion ioRegion(ndim); itk::ImageIORegion::SizeType ioSize = ioRegion.GetSize(); itk::ImageIORegion::IndexType ioStart = ioRegion.GetIndex(); unsigned int dimensions[MAXDIM]; dimensions[0] = 0; dimensions[1] = 0; dimensions[2] = 0; dimensions[3] = 0; ScalarType spacing[MAXDIM]; spacing[0] = 1.0f; spacing[1] = 1.0f; spacing[2] = 1.0f; spacing[3] = 1.0f; Point3D origin; origin.Fill(0); unsigned int i; for (i = 0; i < ndim; ++i) { ioStart[i] = 0; ioSize[i] = nrrdImageIO->GetDimensions(i); if (iGetDimensions(i); spacing[i] = nrrdImageIO->GetSpacing(i); if (spacing[i] <= 0) spacing[i] = 1.0f; } if (i<3) { origin[i] = nrrdImageIO->GetOrigin(i); } } ioRegion.SetSize(ioSize); ioRegion.SetIndex(ioStart); MITK_INFO << "ioRegion: " << ioRegion << std::endl; nrrdImageIO->SetIORegion(ioRegion); void* buffer = new unsigned char[nrrdImageIO->GetImageSizeInBytes()]; nrrdImageIO->Read(buffer); image->Initialize(MakePixelType(nrrdImageIO), ndim, dimensions); image->SetImportChannel(buffer, 0, Image::ManageMemory); // access direction of itk::Image and include spacing mitk::Matrix3D matrix; matrix.SetIdentity(); unsigned int j, itkDimMax3 = (ndim >= 3 ? 3 : ndim); for (i = 0; i < itkDimMax3; ++i) for (j = 0; j < itkDimMax3; ++j) matrix[i][j] = nrrdImageIO->GetDirection(j)[i]; // re-initialize PlaneGeometry with origin and direction PlaneGeometry* planeGeometry = image->GetSlicedGeometry(0)->GetPlaneGeometry(0); planeGeometry->SetOrigin(origin); planeGeometry->GetIndexToWorldTransform()->SetMatrix(matrix); // re-initialize SlicedGeometry3D SlicedGeometry3D* slicedGeometry = image->GetSlicedGeometry(0); slicedGeometry->InitializeEvenlySpaced(planeGeometry, image->GetDimension(2)); slicedGeometry->SetSpacing(spacing); MITK_INFO << slicedGeometry->GetCornerPoint(false, false, false); MITK_INFO << slicedGeometry->GetCornerPoint(true, true, true); // re-initialize TimeGeometry ProportionalTimeGeometry::Pointer timeGeometry = ProportionalTimeGeometry::New(); timeGeometry->Initialize(slicedGeometry, image->GetDimension(3)); image->SetTimeGeometry(timeGeometry); buffer = NULL; MITK_INFO << "number of image components: " << image->GetPixelType().GetNumberOfComponents() << std::endl; const itk::MetaDataDictionary& dictionary = nrrdImageIO->GetMetaDataDictionary(); for (itk::MetaDataDictionary::ConstIterator iter = dictionary.Begin(), iterEnd = dictionary.End(); iter != iterEnd; ++iter) { std::string key = std::string("meta.") + iter->first; if (iter->second->GetMetaDataObjectTypeInfo() == typeid(std::string)) { std::string value = dynamic_cast*>(iter->second.GetPointer())->GetMetaDataObjectValue(); image->SetProperty(key.c_str(), mitk::StringProperty::New(value)); } } // end regular image loading LabelSetImage::Pointer output = LabelSetImageConverter::ConvertImageToLabelSetImage(image); // get labels and add them as properties to the image char keybuffer[256]; unsigned int numberOfLayers = GetIntByKey(dictionary, "layers"); std::string _xmlStr; mitk::Label::Pointer label; for (unsigned int layerIdx = 0; layerIdx < numberOfLayers; layerIdx++) { sprintf(keybuffer, "layer_%03d", layerIdx); int numberOfLabels = GetIntByKey(dictionary, keybuffer); mitk::LabelSet::Pointer labelSet = mitk::LabelSet::New(); for (int labelIdx = 0; labelIdx < numberOfLabels; labelIdx++) { TiXmlDocument doc; sprintf(keybuffer, "label_%03d_%05d", layerIdx, labelIdx); _xmlStr = GetStringByKey(dictionary, keybuffer); doc.Parse(_xmlStr.c_str()); TiXmlElement * labelElem = doc.FirstChildElement("Label"); if (labelElem == 0) mitkThrow() << "Error parsing NRRD header for mitk::LabelSetImage IO"; label = LoadLabelFromTiXmlDocument(labelElem); if (label->GetValue() == 0) // set exterior label is needed to hold exterior information output->SetExteriorLabel(label); labelSet->AddLabel(label); labelSet->SetLayer(layerIdx); } output->AddLabelSetToLayer(layerIdx, labelSet); } MITK_INFO << "...finished!" << std::endl; try { setlocale(LC_ALL, currLocale.c_str()); } catch(...) { mitkThrow() << "Could not reset locale!"; } std::vector result; result.push_back(output.GetPointer()); return result; } int LabelSetImageIO::GetIntByKey(const itk::MetaDataDictionary & dic,const std::string & str) { std::vector imgMetaKeys = dic.GetKeys(); std::vector::const_iterator itKey = imgMetaKeys.begin(); std::string metaString(""); for (; itKey != imgMetaKeys.end(); itKey ++) { itk::ExposeMetaData (dic, *itKey, metaString); if (itKey->find(str.c_str()) != std::string::npos) { return atoi(metaString.c_str()); } } return 0; } std::string LabelSetImageIO::GetStringByKey(const itk::MetaDataDictionary & dic,const std::string & str) { std::vector imgMetaKeys = dic.GetKeys(); std::vector::const_iterator itKey = imgMetaKeys.begin(); std::string metaString(""); for (; itKey != imgMetaKeys.end(); itKey ++) { itk::ExposeMetaData (dic, *itKey, metaString); if (itKey->find(str.c_str()) != std::string::npos) { return metaString; } } return metaString; } Label::Pointer LabelSetImageIO::LoadLabelFromTiXmlDocument(TiXmlElement * labelElem) { // reread TiXmlElement * propElem = labelElem->FirstChildElement("property"); std::string name; mitk::BaseProperty::Pointer prop; mitk::Label::Pointer label = mitk::Label::New(); while(propElem) { LabelSetImageIO::PropertyFromXmlElem( name, prop, propElem ); label->SetProperty( name, prop ); propElem = propElem->NextSiblingElement( "property" ); } return label.GetPointer(); } bool LabelSetImageIO::PropertyFromXmlElem(std::string& key, mitk::BaseProperty::Pointer& prop, TiXmlElement* elem) { std::string type; elem->QueryStringAttribute("type", &type); elem->QueryStringAttribute("key", &key); // construct name of serializer class std::string serializername(type); serializername += "Serializer"; std::list allSerializers = itk::ObjectFactoryBase::CreateAllInstance(serializername.c_str()); if (allSerializers.size() < 1) MITK_ERROR << "No serializer found for " << type << ". Skipping object"; if (allSerializers.size() > 1) MITK_WARN << "Multiple deserializers found for " << type << "Using arbitrarily the first one."; for ( std::list::iterator iter = allSerializers.begin(); iter != allSerializers.end(); ++iter ) { if (BasePropertySerializer* serializer = dynamic_cast( iter->GetPointer() ) ) { try { prop = serializer->Deserialize(elem->FirstChildElement()); } catch (std::exception& e) { MITK_ERROR << "Deserializer " << serializer->GetNameOfClass() << " failed: " << e.what(); return false; } break; } } if(prop.IsNull()) return false; return true; } void LabelSetImageIO::LoadLabelSetImagePreset(const std::string & presetFilename, mitk::LabelSetImage::Pointer& inputImage ) { std::unique_ptr presetXmlDoc(new TiXmlDocument()); bool ok = presetXmlDoc->LoadFile(presetFilename); if ( !ok ) return; TiXmlElement * presetElem = presetXmlDoc->FirstChildElement("LabelSetImagePreset"); if(!presetElem) { MITK_INFO << "No valid preset XML"; return; } int numberOfLayers; presetElem->QueryIntAttribute("layers", &numberOfLayers); for(int i = 0 ; i < numberOfLayers; i++) { TiXmlElement * layerElem = presetElem->FirstChildElement("Layer"); int numberOfLabels; layerElem->QueryIntAttribute("labels", &numberOfLabels); if(inputImage->GetLabelSet(i) == NULL) inputImage->AddLayer(); TiXmlElement * labelElement = layerElem->FirstChildElement("Label"); if(labelElement == NULL) break; for(int j = 0 ; j < numberOfLabels; j++) { mitk::Label::Pointer label = mitk::LabelSetImageIO::LoadLabelFromTiXmlDocument(labelElement); - inputImage->GetLabelSet()->AddLabel(label); + + if(label->GetValue() == 0) + inputImage->SetExteriorLabel(label); + else + inputImage->GetLabelSet()->AddLabel(label); labelElement = labelElement->NextSiblingElement("Label"); if(labelElement == NULL) break; } } } LabelSetImageIO* LabelSetImageIO::IOClone() const { return new LabelSetImageIO(*this); } TiXmlElement * LabelSetImageIO::GetLabelAsTiXmlElement(Label * label) { TiXmlElement* labelElem = new TiXmlElement("Label"); // add XML contents const PropertyList::PropertyMap* propmap = label->GetMap(); for ( PropertyList::PropertyMap::const_iterator iter = propmap->begin(); iter != propmap->end(); ++iter ) { std::string key = iter->first; const BaseProperty* property = iter->second; TiXmlElement* element = PropertyToXmlElem( key, property ); if (element) labelElem->LinkEndChild( element ); } return labelElem; } TiXmlElement* LabelSetImageIO::PropertyToXmlElem( const std::string& key, const BaseProperty* property ) { TiXmlElement* keyelement = new TiXmlElement("property"); keyelement->SetAttribute("key", key); keyelement->SetAttribute("type", property->GetNameOfClass()); // construct name of serializer class std::string serializername(property->GetNameOfClass()); serializername += "Serializer"; std::list allSerializers = itk::ObjectFactoryBase::CreateAllInstance(serializername.c_str()); if (allSerializers.size() < 1) MITK_ERROR << "No serializer found for " << property->GetNameOfClass() << ". Skipping object"; if (allSerializers.size() > 1) MITK_WARN << "Multiple serializers found for " << property->GetNameOfClass() << "Using arbitrarily the first one."; for ( std::list::iterator iter = allSerializers.begin(); iter != allSerializers.end(); ++iter ) { if (BasePropertySerializer* serializer = dynamic_cast( iter->GetPointer() ) ) { serializer->SetProperty(property); try { TiXmlElement* valueelement = serializer->Serialize(); if (valueelement) keyelement->LinkEndChild( valueelement ); } catch (std::exception& e) { MITK_ERROR << "Serializer " << serializer->GetNameOfClass() << " failed: " << e.what(); } break; } } return keyelement; } bool LabelSetImageIO::SaveLabelSetImagePreset(const std::string & presetFilename, LabelSetImage::Pointer & inputImage) { TiXmlDocument * presetXmlDoc = new TiXmlDocument(); TiXmlDeclaration * decl = new TiXmlDeclaration( "1.0", "", "" ); presetXmlDoc->LinkEndChild( decl ); TiXmlElement * presetElement = new TiXmlElement("LabelSetImagePreset"); presetElement->SetAttribute("layers", inputImage->GetNumberOfLayers()); presetXmlDoc->LinkEndChild(presetElement); for (unsigned int layerIdx=0; layerIdxGetNumberOfLayers(); layerIdx++) { TiXmlElement * layerElement = new TiXmlElement("Layer"); layerElement->SetAttribute("index", layerIdx); layerElement->SetAttribute("labels", inputImage->GetNumberOfLabels(layerIdx)); presetElement->LinkEndChild(layerElement); for (unsigned int labelIdx=0; labelIdxGetNumberOfLabels(layerIdx); labelIdx++) { TiXmlElement * labelAsXml = LabelSetImageIO::GetLabelAsTiXmlElement(inputImage->GetLabel(labelIdx,layerIdx)); layerElement->LinkEndChild(labelAsXml); } } bool wasSaved = presetXmlDoc->SaveFile(presetFilename); delete presetXmlDoc; return wasSaved; } } //namespace #endif //__mitkLabelSetImageWriter__cpp diff --git a/Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkCreateMultiLabelPresetAction.cpp b/Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkCreateMultiLabelPresetAction.cpp index bf0e1c3e95..aa8aa14566 100644 --- a/Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkCreateMultiLabelPresetAction.cpp +++ b/Plugins/org.mitk.gui.qt.multilabelsegmentation/src/internal/QmitkCreateMultiLabelPresetAction.cpp @@ -1,84 +1,84 @@ /*=================================================================== The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See LICENSE.txt or http://www.mitk.org for details. ===================================================================*/ #include "QmitkCreateMultiLabelPresetAction.h" #include "mitkLabelSetImage.h" #include "QMessageBox" #include #include "QFileDialog" //MLI TODO -//#include "mitkLabelSetImageWriter.h" +#include "mitkLabelSetImageIO.h" #include "tinyxml.h" QmitkCreateMultiLabelPresetAction::QmitkCreateMultiLabelPresetAction() { } QmitkCreateMultiLabelPresetAction::~QmitkCreateMultiLabelPresetAction() { } void QmitkCreateMultiLabelPresetAction::Run( const QList &selectedNodes ) { foreach ( mitk::DataNode::Pointer referenceNode, selectedNodes ) { if (referenceNode.IsNotNull()) { mitk::LabelSetImage::Pointer referenceImage = dynamic_cast( referenceNode->GetData() ); assert(referenceImage); if(referenceImage->GetNumberOfLabels() <= 1) { QMessageBox::information(NULL, "Create LabelSetImage Preset", "Could not create a LabelSetImage preset.\nNo Labels defined!\n");\ return; } std::string sName = referenceNode->GetName(); QString qName; qName.sprintf("%s.lsetp",sName.c_str()); QString filename = QFileDialog::getSaveFileName( NULL,"save file dialog",QString(),"LabelSet Preset(*.lsetp)"); if ( filename.isEmpty() ) return; //MLI TODO - bool wasSaved;// = mitk::LabelSetImageWriter::SaveLabelSetImagePreset(filename.toStdString(),referenceImage); + bool wasSaved = mitk::LabelSetImageIO::SaveLabelSetImagePreset(filename.toStdString(),referenceImage); if(!wasSaved) { QMessageBox::information(NULL, "Create LabelSetImage Preset", "Could not save a LabelSetImage preset as Xml.\n");\ return; } } } } void QmitkCreateMultiLabelPresetAction::SetDataStorage(mitk::DataStorage* dataStorage) { m_DataStorage = dataStorage; } void QmitkCreateMultiLabelPresetAction::SetFunctionality(berry::QtViewPart* /*functionality*/) { //not needed } void QmitkCreateMultiLabelPresetAction::SetSmoothed(bool smoothed) { //not needed } void QmitkCreateMultiLabelPresetAction::SetDecimated(bool decimated) { //not needed -} \ No newline at end of file +}