diff --git a/Applications/PluginGenerator/ProjectTemplate/CMakeExternals/MITK.cmake b/Applications/PluginGenerator/ProjectTemplate/CMakeExternals/MITK.cmake
index 7f79d4fa82..727a37cca8 100644
--- a/Applications/PluginGenerator/ProjectTemplate/CMakeExternals/MITK.cmake
+++ b/Applications/PluginGenerator/ProjectTemplate/CMakeExternals/MITK.cmake
@@ -1,212 +1,213 @@
#-----------------------------------------------------------------------------
# MITK
#-----------------------------------------------------------------------------
set(MITK_DEPENDS)
set(proj_DEPENDENCIES)
set(proj MITK)
if(NOT MITK_DIR)
#-----------------------------------------------------------------------------
# Create CMake options to customize the MITK build
#-----------------------------------------------------------------------------
option(MITK_USE_SUPERBUILD "Use superbuild for MITK" ON)
option(MITK_USE_BLUEBERRY "Build the BlueBerry platform in MITK" ON)
option(MITK_BUILD_EXAMPLES "Build the MITK examples" OFF)
option(MITK_BUILD_ALL_PLUGINS "Build all MITK plugins" OFF)
option(MITK_BUILD_TESTING "Build the MITK unit tests" OFF)
option(MITK_USE_CTK "Use CTK in MITK" ${MITK_USE_BLUEBERRY})
option(MITK_USE_DCMTK "Use DCMTK in MITK" ON)
option(MITK_USE_QT "Use Nokia's Qt library in MITK" ON)
option(MITK_USE_Boost "Use the Boost library in MITK" OFF)
option(MITK_USE_OpenCV "Use Intel's OpenCV library" OFF)
option(MITK_USE_Python "Enable Python wrapping in MITK" OFF)
if(MITK_USE_BLUEBERRY AND NOT MITK_USE_CTK)
message("Forcing MITK_USE_CTK to ON because of MITK_USE_BLUEBERRY")
set(MITK_USE_CTK ON CACHE BOOL "Use CTK in MITK" FORCE)
endif()
if(MITK_USE_CTK AND NOT MITK_USE_QT)
message("Forcing MITK_USE_QT to ON because of MITK_USE_CTK")
set(MITK_USE_QT ON CACHE BOOL "Use Nokia's Qt library in MITK" FORCE)
endif()
+ set(MITK_USE_CableSwig ${MITK_USE_Python})
set(MITK_USE_GDCM 1)
set(MITK_USE_ITK 1)
set(MITK_USE_VTK 1)
mark_as_advanced(MITK_USE_SUPERBUILD
MITK_BUILD_ALL_PLUGINS
MITK_BUILD_TESTING
)
set(mitk_cmake_boolean_args
MITK_USE_SUPERBUILD
MITK_USE_BLUEBERRY
MITK_BUILD_EXAMPLES
MITK_BUILD_ALL_PLUGINS
MITK_USE_CTK
MITK_USE_DCMTK
MITK_USE_QT
MITK_USE_Boost
MITK_USE_OpenCV
MITK_USE_Python
)
if(MITK_USE_QT)
# Look for Qt at the superbuild level, to catch missing Qt libs early
find_package(Qt4 4.6.0 REQUIRED)
endif()
set(additional_mitk_cmakevars )
# Configure the set of default pixel types
set(MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES
"int, unsigned int, short, unsigned short, char, unsigned char"
CACHE STRING "List of integral pixel types used in AccessByItk and InstantiateAccessFunction macros")
set(MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES
"double, float"
CACHE STRING "List of floating pixel types used in AccessByItk and InstantiateAccessFunction macros")
set(MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES
""
CACHE STRING "List of composite pixel types used in AccessByItk and InstantiateAccessFunction macros")
set(MITK_ACCESSBYITK_DIMENSIONS
"2,3"
CACHE STRING "List of dimensions used in AccessByItk and InstantiateAccessFunction macros")
foreach(_arg MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES
MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES MITK_ACCESSBYITK_DIMENSIONS)
mark_as_advanced(${_arg})
list(APPEND additional_mitk_cmakevars "-D${_arg}:STRING=${${_arg}}")
endforeach()
#-----------------------------------------------------------------------------
# Create options to inject pre-build dependencies
#-----------------------------------------------------------------------------
- foreach(proj CTK DCMTK GDCM VTK ITK OpenCV)
+ foreach(proj CTK DCMTK GDCM VTK ITK OpenCV CableSwig)
if(MITK_USE_${proj})
set(MITK_${proj}_DIR "${${proj}_DIR}" CACHE PATH "Path to ${proj} build directory")
mark_as_advanced(MITK_${proj}_DIR)
if(MITK_${proj}_DIR)
list(APPEND additional_mitk_cmakevars "-D${proj}_DIR:PATH=${MITK_${proj}_DIR}")
endif()
endif()
endforeach()
if(MITK_USE_Boost)
set(MITK_BOOST_ROOT "${BOOST_ROOT}" CACHE PATH "Path to Boost directory")
mark_as_advanced(MITK_BOOST_ROOT)
if(MITK_BOOST_ROOT)
list(APPEND additional_mitk_cmakevars "-DBOOST_ROOT:PATH=${MITK_BOOST_ROOT}")
endif()
endif()
set(MITK_SOURCE_DIR "" CACHE PATH "MITK source code location. If empty, MITK will be cloned from MITK_GIT_REPOSITORY")
set(MITK_GIT_REPOSITORY "http://git.mitk.org/MITK.git" CACHE STRING "The git repository for cloning MITK")
set(MITK_GIT_TAG "origin/master" CACHE STRING "The git tag/hash to be used when cloning from MITK_GIT_REPOSITORY")
mark_as_advanced(MITK_SOURCE_DIR MITK_GIT_REPOSITORY MITK_GIT_TAG)
#-----------------------------------------------------------------------------
# Create the final variable containing superbuild boolean args
#-----------------------------------------------------------------------------
set(mitk_boolean_args)
foreach(mitk_cmake_arg ${mitk_cmake_boolean_args})
list(APPEND mitk_boolean_args -D${mitk_cmake_arg}:BOOL=${${mitk_cmake_arg}})
endforeach()
#-----------------------------------------------------------------------------
# Additional MITK CMake variables
#-----------------------------------------------------------------------------
if(MITK_USE_QT AND QT_QMAKE_EXECUTABLE)
list(APPEND additional_mitk_cmakevars "-DQT_QMAKE_EXECUTABLE:FILEPATH=${QT_QMAKE_EXECUTABLE}")
endif()
if(MITK_USE_CTK)
list(APPEND additional_mitk_cmakevars "-DGIT_EXECUTABLE:FILEPATH=${GIT_EXECUTABLE}")
endif()
if(MITK_INITIAL_CACHE_FILE)
list(APPEND additional_mitk_cmakevars "-DMITK_INITIAL_CACHE_FILE:INTERNAL=${MITK_INITIAL_CACHE_FILE}")
endif()
if(MITK_USE_SUPERBUILD)
set(MITK_BINARY_DIR ${proj}-superbuild)
else()
set(MITK_BINARY_DIR ${proj}-build)
endif()
set(proj_DEPENDENCIES)
set(MITK_DEPENDS ${proj})
# Configure the MITK souce code location
if(NOT MITK_SOURCE_DIR)
set(mitk_source_location
SOURCE_DIR ${CMAKE_BINARY_DIR}/${proj}
GIT_REPOSITORY ${MITK_GIT_REPOSITORY}
GIT_TAG ${MITK_GIT_TAG}
)
else()
set(mitk_source_location
SOURCE_DIR ${MITK_SOURCE_DIR}
)
endif()
ExternalProject_Add(${proj}
${mitk_source_location}
BINARY_DIR ${MITK_BINARY_DIR}
PREFIX ${proj}${ep_suffix}
INSTALL_COMMAND ""
CMAKE_GENERATOR ${gen}
CMAKE_ARGS
${ep_common_args}
${mitk_boolean_args}
${additional_mitk_cmakevars}
-DBUILD_SHARED_LIBS:BOOL=ON
-DBUILD_TESTING:BOOL=${MITK_BUILD_TESTING}
DEPENDS
${proj_DEPENDENCIES}
)
if(MITK_USE_SUPERBUILD)
set(MITK_DIR "${CMAKE_CURRENT_BINARY_DIR}/${MITK_BINARY_DIR}/MITK-build")
else()
set(MITK_DIR "${CMAKE_CURRENT_BINARY_DIR}/${MITK_BINARY_DIR}")
endif()
else()
# The project is provided using MITK_DIR, nevertheless since other
# projects may depend on MITK, let's add an 'empty' one
MacroEmptyExternalProject(${proj} "${proj_DEPENDENCIES}")
# Further, do some sanity checks in the case of a pre-built MITK
set(my_itk_dir ${ITK_DIR})
set(my_vtk_dir ${VTK_DIR})
set(my_qmake_executable ${QT_QMAKE_EXECUTABLE})
find_package(MITK REQUIRED)
if(my_itk_dir AND NOT my_itk_dir STREQUAL ${ITK_DIR})
message(FATAL_ERROR "ITK packages do not match:\n ${MY_PROJECT_NAME}: ${my_itk_dir}\n MITK: ${ITK_DIR}")
endif()
if(my_vtk_dir AND NOT my_vtk_dir STREQUAL ${VTK_DIR})
message(FATAL_ERROR "VTK packages do not match:\n ${MY_PROJECT_NAME}: ${my_vtk_dir}\n MITK: ${VTK_DIR}")
endif()
if(my_qmake_executable AND NOT my_qmake_executable STREQUAL ${MITK_QMAKE_EXECUTABLE})
message(FATAL_ERROR "Qt qmake does not match:\n ${MY_PROJECT_NAME}: ${my_qmake_executable}\n MITK: ${MITK_QMAKE_EXECUTABLE}")
endif()
endif()
diff --git a/CMakeExternals/CableSwig.cmake b/CMakeExternals/CableSwig.cmake
new file mode 100644
index 0000000000..759243ff91
--- /dev/null
+++ b/CMakeExternals/CableSwig.cmake
@@ -0,0 +1,44 @@
+#-----------------------------------------------------------------------------
+# CableSwig
+#-----------------------------------------------------------------------------
+
+if(MITK_USE_Python)
+
+# Sanity checks
+if(DEFINED CableSwig_DIR AND NOT EXISTS ${CableSwig_DIR})
+ message(FATAL_ERROR "CableSwig_DIR variable is defined but corresponds to non-existing directory")
+endif()
+
+set(proj CableSwig)
+set(proj_DEPENDENCIES )
+set(CableSwig_DEPENDS ${proj})
+
+if(NOT DEFINED CableSwig_DIR)
+
+ set(additional_cmake_args )
+
+ ExternalProject_Add(${proj}
+ SOURCE_DIR ${CMAKE_BINARY_DIR}/${proj}-src
+ BINARY_DIR ${proj}-build
+ PREFIX ${proj}-cmake
+ URL ${MITK_THIRDPARTY_DOWNLOAD_PREFIX_URL}/CableSwig-ITK-3.20.0.tar.gz
+ URL_MD5 893882bf8b4fbfbae3fe8c747a75f7a0
+ INSTALL_COMMAND ""
+ CMAKE_GENERATOR ${gen}
+ CMAKE_ARGS
+ ${ep_common_args}
+ ${additional_cmake_args}
+ -DBUILD_TESTING:BOOL=OFF
+ -DSWIG_BUILD_EXAMPLES:BOOL=OFF
+ DEPENDS ${proj_DEPENDENCIES}
+ )
+
+ set(CableSwig_DIR ${CMAKE_CURRENT_BINARY_DIR}/${proj}-build)
+
+else()
+
+ mitkMacroEmptyExternalProject(${proj} "${proj_DEPENDENCIES}")
+
+endif()
+
+endif()
diff --git a/CMakeExternals/ITK.cmake b/CMakeExternals/ITK.cmake
index 7e695873b1..fd97c4df63 100644
--- a/CMakeExternals/ITK.cmake
+++ b/CMakeExternals/ITK.cmake
@@ -1,72 +1,75 @@
#-----------------------------------------------------------------------------
# ITK
#-----------------------------------------------------------------------------
# Sanity checks
if(DEFINED ITK_DIR AND NOT EXISTS ${ITK_DIR})
message(FATAL_ERROR "ITK_DIR variable is defined but corresponds to non-existing directory")
endif()
set(proj ITK)
set(proj_DEPENDENCIES GDCM)
+if(MITK_USE_Python)
+ list(APPEND proj_DEPENDENCIES CableSwig)
+endif()
set(ITK_DEPENDS ${proj})
if(NOT DEFINED ITK_DIR)
set(additional_cmake_args )
if(MINGW)
set(additional_cmake_args
-DCMAKE_USE_WIN32_THREADS:BOOL=ON
-DCMAKE_USE_PTHREADS:BOOL=OFF)
endif()
if(MITK_USE_Python)
list(APPEND additional_cmake_args
-DUSE_WRAP_ITK:BOOL=ON
-DITK_USE_REVIEW:BOOL=ON
-DCableSwig_DIR:PATH=${CableSwig_DIR}
-DWRAP_ITK_JAVA:BOOL=OFF
-DWRAP_ITK_TCL:BOOL=OFF
-DWRAP_unsigned_char:BOOL=ON
-DWRAP_double:BOOL=ON
-DWRAP_rgb_unsigned_char:BOOL=ON
-DWRAP_rgba_unsigned_char:BOOL=ON
-DWRAP_signed_char:BOOL=ON
-DWRAP_signed_long:BOOL=ON
-DWRAP_signed_short:BOOL=ON
-DWRAP_short:BOOL=ON
-DWRAP_unsigned_long:BOOL=ON
)
endif()
if(GDCM_IS_2_0_18)
set(ITK_PATCH_COMMAND ${CMAKE_COMMAND} -DTEMPLATE_FILE:FILEPATH=${MITK_SOURCE_DIR}/CMakeExternals/EmptyFileForPatching.dummy -P ${MITK_SOURCE_DIR}/CMakeExternals/PatchITK-3.20.cmake)
endif()
ExternalProject_Add(${proj}
SOURCE_DIR ${CMAKE_BINARY_DIR}/${proj}-src
BINARY_DIR ${proj}-build
PREFIX ${proj}-cmake
URL ${MITK_THIRDPARTY_DOWNLOAD_PREFIX_URL}/InsightToolkit-3.20.1.tar.gz
URL_MD5 90342ffa78bd88ae48b3f62866fbf050
INSTALL_COMMAND ""
PATCH_COMMAND ${ITK_PATCH_COMMAND}
CMAKE_GENERATOR ${gen}
CMAKE_ARGS
${ep_common_args}
${additional_cmake_args}
-DBUILD_TESTING:BOOL=OFF
-DBUILD_EXAMPLES:BOOL=OFF
-DITK_USE_SYSTEM_GDCM:BOOL=ON
-DGDCM_DIR:PATH=${GDCM_DIR}
DEPENDS ${proj_DEPENDENCIES}
)
set(ITK_DIR ${CMAKE_CURRENT_BINARY_DIR}/${proj}-build)
else()
mitkMacroEmptyExternalProject(${proj} "${proj_DEPENDENCIES}")
endif()
diff --git a/CMakeLists.txt b/CMakeLists.txt
index de58d6dee6..a1445cd4f8 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -1,938 +1,936 @@
if(APPLE)
# With XCode 4.3, the SDK location changed. Older CMake
# versions are not able to find it.
cmake_minimum_required(VERSION 2.8.8)
else()
cmake_minimum_required(VERSION 2.8.4)
endif()
#-----------------------------------------------------------------------------
# Set a default build type if none was specified
#-----------------------------------------------------------------------------
if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
message(STATUS "Setting build type to 'Debug' as none was specified.")
set(CMAKE_BUILD_TYPE Debug CACHE STRING "Choose the type of build." FORCE)
# Set the possible values of build type for cmake-gui
set_property(CACHE CMAKE_BUILD_TYPE PROPERTY
STRINGS "Debug" "Release" "MinSizeRel" "RelWithDebInfo")
endif()
#-----------------------------------------------------------------------------
# Superbuild Option - Enabled by default
#-----------------------------------------------------------------------------
option(MITK_USE_SUPERBUILD "Build MITK and the projects it depends on via SuperBuild.cmake." ON)
if(MITK_USE_SUPERBUILD)
project(MITK-superbuild)
set(MITK_SOURCE_DIR ${PROJECT_SOURCE_DIR})
set(MITK_BINARY_DIR ${PROJECT_BINARY_DIR})
else()
project(MITK)
endif()
#-----------------------------------------------------------------------------
# Warn if source or build path is too long
#-----------------------------------------------------------------------------
if(WIN32)
set(_src_dir_length_max 50)
set(_bin_dir_length_max 50)
if(MITK_USE_SUPERBUILD)
set(_src_dir_length_max 43) # _src_dir_length_max - strlen(ITK-src)
set(_bin_dir_length_max 40) # _bin_dir_length_max - strlen(MITK-build)
endif()
string(LENGTH "${MITK_SOURCE_DIR}" _src_n)
string(LENGTH "${MITK_BINARY_DIR}" _bin_n)
# The warnings should be converted to errors
if(_src_n GREATER _src_dir_length_max)
message(WARNING "MITK source code directory path length is too long (${_src_n} > ${_src_dir_length_max})."
"Please move the MITK source code directory to a directory with a shorter path." )
endif()
if(_bin_n GREATER _bin_dir_length_max)
message(WARNING "MITK build directory path length is too long (${_bin_n} > ${_bin_dir_length_max})."
"Please move the MITK build directory to a directory with a shorter path." )
endif()
endif()
#-----------------------------------------------------------------------------
# See http://cmake.org/cmake/help/cmake-2-8-docs.html#section_Policies for details
#-----------------------------------------------------------------------------
set(project_policies
CMP0001 # NEW: CMAKE_BACKWARDS_COMPATIBILITY should no longer be used.
CMP0002 # NEW: Logical target names must be globally unique.
CMP0003 # NEW: Libraries linked via full path no longer produce linker search paths.
CMP0004 # NEW: Libraries linked may NOT have leading or trailing whitespace.
CMP0005 # NEW: Preprocessor definition values are now escaped automatically.
CMP0006 # NEW: Installing MACOSX_BUNDLE targets requires a BUNDLE DESTINATION.
CMP0007 # NEW: List command no longer ignores empty elements.
CMP0008 # NEW: Libraries linked by full-path must have a valid library file name.
CMP0009 # NEW: FILE GLOB_RECURSE calls should not follow symlinks by default.
CMP0010 # NEW: Bad variable reference syntax is an error.
CMP0011 # NEW: Included scripts do automatic cmake_policy PUSH and POP.
CMP0012 # NEW: if() recognizes numbers and boolean constants.
CMP0013 # NEW: Duplicate binary directories are not allowed.
CMP0014 # NEW: Input directories must have CMakeLists.txt
)
foreach(policy ${project_policies})
if(POLICY ${policy})
cmake_policy(SET ${policy} NEW)
endif()
endforeach()
#-----------------------------------------------------------------------------
# Update CMake module path
#------------------------------------------------------------------------------
set(CMAKE_MODULE_PATH
${MITK_SOURCE_DIR}/CMake
${CMAKE_MODULE_PATH}
)
#-----------------------------------------------------------------------------
# CMake function(s) and macro(s)
#-----------------------------------------------------------------------------
include(mitkMacroEmptyExternalProject)
include(mitkFunctionGenerateProjectXml)
include(mitkFunctionSuppressWarnings)
SUPPRESS_VC_DEPRECATED_WARNINGS()
#-----------------------------------------------------------------------------
# Output directories.
#-----------------------------------------------------------------------------
foreach(type LIBRARY RUNTIME ARCHIVE)
# Make sure the directory exists
if(DEFINED MITK_CMAKE_${type}_OUTPUT_DIRECTORY
AND NOT EXISTS ${MITK_CMAKE_${type}_OUTPUT_DIRECTORY})
message("Creating directory MITK_CMAKE_${type}_OUTPUT_DIRECTORY: ${MITK_CMAKE_${type}_OUTPUT_DIRECTORY}")
file(MAKE_DIRECTORY "${MITK_CMAKE_${type}_OUTPUT_DIRECTORY}")
endif()
if(MITK_USE_SUPERBUILD)
set(output_dir ${MITK_BINARY_DIR}/bin)
if(NOT DEFINED MITK_CMAKE_${type}_OUTPUT_DIRECTORY)
set(MITK_CMAKE_${type}_OUTPUT_DIRECTORY ${MITK_BINARY_DIR}/MITK-build/bin)
endif()
else()
if(NOT DEFINED MITK_CMAKE_${type}_OUTPUT_DIRECTORY)
set(output_dir ${MITK_BINARY_DIR}/bin)
else()
set(output_dir ${MITK_CMAKE_${type}_OUTPUT_DIRECTORY})
endif()
endif()
set(CMAKE_${type}_OUTPUT_DIRECTORY ${output_dir} CACHE INTERNAL "Single output directory for building all libraries.")
mark_as_advanced(CMAKE_${type}_OUTPUT_DIRECTORY)
endforeach()
#-----------------------------------------------------------------------------
# Additional MITK Options (also shown during superbuild)
#-----------------------------------------------------------------------------
option(BUILD_SHARED_LIBS "Build MITK with shared libraries" ON)
option(WITH_COVERAGE "Enable/Disable coverage" OFF)
option(BUILD_TESTING "Test the project" ON)
option(MITK_BUILD_ALL_APPS "Build all MITK applications" OFF)
set(MITK_BUILD_TUTORIAL OFF CACHE INTERNAL "Deprecated! Use MITK_BUILD_EXAMPLES instead!")
option(MITK_BUILD_EXAMPLES "Build the MITK Examples" ${MITK_BUILD_TUTORIAL})
option(MITK_USE_Boost "Use the Boost C++ library" OFF)
option(MITK_USE_BLUEBERRY "Build the BlueBerry platform" ON)
option(MITK_USE_CTK "Use CTK in MITK" ${MITK_USE_BLUEBERRY})
option(MITK_USE_QT "Use Nokia's Qt library" ${MITK_USE_CTK})
option(MITK_USE_DCMTK "EXPERIMENTAL, superbuild only: Use DCMTK in MITK" ${MITK_USE_CTK})
option(MITK_DCMTK_BUILD_SHARED_LIBS "EXPERIMENTAL, superbuild only: build DCMTK as shared libs" OFF)
option(MITK_USE_OpenCV "Use Intel's OpenCV library" OFF)
option(MITK_USE_OpenCL "Use OpenCL GPU-Computing library" OFF)
option(MITK_USE_Python "Use Python wrapping in MITK" OFF)
+set(MITK_USE_CableSwig ${MITK_USE_Python})
mark_as_advanced(MITK_BUILD_ALL_APPS
MITK_USE_CTK
MITK_USE_DCMTK
)
if(MITK_USE_Boost)
option(MITK_USE_SYSTEM_Boost "Use the system Boost" OFF)
set(MITK_USE_Boost_LIBRARIES "" CACHE STRING "A semi-colon separated list of required Boost libraries")
endif()
if(MITK_USE_BLUEBERRY)
option(MITK_BUILD_ALL_PLUGINS "Build all MITK plugins" OFF)
mark_as_advanced(MITK_BUILD_ALL_PLUGINS)
if(NOT MITK_USE_CTK)
message("Forcing MITK_USE_CTK to ON because of MITK_USE_BLUEBERRY")
set(MITK_USE_CTK ON CACHE BOOL "Use CTK in MITK" FORCE)
endif()
endif()
if(MITK_USE_CTK)
if(NOT MITK_USE_QT)
message("Forcing MITK_USE_QT to ON because of MITK_USE_CTK")
set(MITK_USE_QT ON CACHE BOOL "Use Nokia's Qt library in MITK" FORCE)
endif()
if(NOT MITK_USE_DCMTK)
message("Setting MITK_USE_DCMTK to ON because DCMTK needs to be build for CTK")
set(MITK_USE_DCMTK ON CACHE BOOL "Use DCMTK in MITK" FORCE)
endif()
endif()
if(MITK_USE_QT)
# find the package at the very beginning, so that QT4_FOUND is available
find_package(Qt4 4.6.2 REQUIRED)
endif()
# Customize the default pixel types for multiplex macros
set(MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES
"int, unsigned int, short, unsigned short, char, unsigned char"
CACHE STRING "List of integral pixel types used in AccessByItk and InstantiateAccessFunction macros")
set(MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES
"double, float"
CACHE STRING "List of floating pixel types used in AccessByItk and InstantiateAccessFunction macros")
set(MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES
"itk::RGBPixel<unsigned char>, itk::RGBAPixel<unsigned char>"
CACHE STRING "List of composite pixel types used in AccessByItk and InstantiateAccessFunction macros")
set(MITK_ACCESSBYITK_DIMENSIONS
"2,3"
CACHE STRING "List of dimensions used in AccessByItk and InstantiateAccessFunction macros")
mark_as_advanced(MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES
MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES
MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES
MITK_ACCESSBYITK_DIMENSIONS
)
# consistency checks
if(NOT MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES)
set(MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES
"int, unsigned int, short, unsigned short, char, unsigned char"
CACHE STRING "List of integral pixel types used in AccessByItk and InstantiateAccessFunction macros" FORCE)
endif()
if(NOT MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES)
set(MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES
"double, float"
CACHE STRING "List of floating pixel types used in AccessByItk and InstantiateAccessFunction macros" FORCE)
endif()
if(NOT MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES)
set(MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES
"itk::RGBPixel<unsigned char>, itk::RGBAPixel<unsigned char>"
CACHE STRING "List of composite pixel types used in AccessByItk and InstantiateAccessFunction macros" FORCE)
endif()
if(NOT MITK_ACCESSBYITK_DIMENSIONS)
set(MITK_ACCESSBYITK_DIMENSIONS
"2,3"
CACHE STRING "List of dimensions used in AccessByItk and InstantiateAccessFunction macros")
endif()
#-----------------------------------------------------------------------------
# Additional CXX/C Flags
#-----------------------------------------------------------------------------
set(ADDITIONAL_C_FLAGS "" CACHE STRING "Additional C Flags")
mark_as_advanced(ADDITIONAL_C_FLAGS)
set(ADDITIONAL_CXX_FLAGS "" CACHE STRING "Additional CXX Flags")
mark_as_advanced(ADDITIONAL_CXX_FLAGS)
#-----------------------------------------------------------------------------
# Project.xml
#-----------------------------------------------------------------------------
# A list of topologically ordered targets
set(CTEST_PROJECT_SUBPROJECTS)
if(MITK_USE_BLUEBERRY)
list(APPEND CTEST_PROJECT_SUBPROJECTS BlueBerry)
endif()
list(APPEND CTEST_PROJECT_SUBPROJECTS
MITK-Core
MITK-CoreUI
MITK-IGT
MITK-ToF
MITK-DTI
MITK-Registration
MITK-Modules # all modules not contained in a specific subproject
MITK-Plugins # all plugins not contained in a specific subproject
MITK-Examples
Unlabeled # special "subproject" catching all unlabeled targets and tests
)
# Configure CTestConfigSubProject.cmake that could be used by CTest scripts
configure_file(${MITK_SOURCE_DIR}/CTestConfigSubProject.cmake.in
${MITK_BINARY_DIR}/CTestConfigSubProject.cmake)
if(CTEST_PROJECT_ADDITIONAL_TARGETS)
# those targets will be executed at the end of the ctest driver script
# and they also get their own subproject label
set(subproject_list "${CTEST_PROJECT_SUBPROJECTS};${CTEST_PROJECT_ADDITIONAL_TARGETS}")
else()
set(subproject_list "${CTEST_PROJECT_SUBPROJECTS}")
endif()
# Generate Project.xml file expected by the CTest driver script
mitkFunctionGenerateProjectXml(${MITK_BINARY_DIR} MITK "${subproject_list}" ${MITK_USE_SUPERBUILD})
#-----------------------------------------------------------------------------
# Superbuild script
#-----------------------------------------------------------------------------
if(MITK_USE_SUPERBUILD)
include("${CMAKE_CURRENT_SOURCE_DIR}/SuperBuild.cmake")
return()
endif()
#*****************************************************************************
#**************************** END OF SUPERBUILD ****************************
#*****************************************************************************
#-----------------------------------------------------------------------------
# CMake function(s) and macro(s)
#-----------------------------------------------------------------------------
include(CheckCXXSourceCompiles)
include(mitkFunctionCheckCompilerFlags)
include(mitkFunctionGetGccVersion)
include(MacroParseArguments)
include(mitkFunctionSuppressWarnings) # includes several functions
include(mitkFunctionOrganizeSources)
include(mitkFunctionGetVersion)
include(mitkFunctionGetVersionDescription)
include(mitkFunctionCreateWindowsBatchScript)
include(mitkFunctionInstallProvisioningFiles)
include(mitkFunctionInstallAutoLoadModules)
include(mitkFunctionCompileSnippets)
include(mitkMacroCreateModuleConf)
include(mitkMacroCreateModule)
include(mitkMacroCheckModule)
include(mitkMacroCreateModuleTests)
include(mitkFunctionAddCustomModuleTest)
include(mitkMacroUseModule)
include(mitkMacroMultiplexPicType)
include(mitkMacroInstall)
include(mitkMacroInstallHelperApp)
include(mitkMacroInstallTargets)
include(mitkMacroGenerateToolsLibrary)
include(mitkMacroGetLinuxDistribution)
#-----------------------------------------------------------------------------
# Prerequesites
#-----------------------------------------------------------------------------
find_package(ITK REQUIRED)
find_package(VTK REQUIRED)
if(ITK_USE_SYSTEM_GDCM)
find_package(GDCM PATHS ${ITK_GDCM_DIR} REQUIRED)
endif()
#-----------------------------------------------------------------------------
# Set MITK specific options and variables (NOT available during superbuild)
#-----------------------------------------------------------------------------
# ASK THE USER TO SHOW THE CONSOLE WINDOW FOR CoreApp and mitkWorkbench
option(MITK_SHOW_CONSOLE_WINDOW "Use this to enable or disable the console window when starting MITK GUI Applications" ON)
mark_as_advanced(MITK_SHOW_CONSOLE_WINDOW)
# TODO: check if necessary
option(USE_ITKZLIB "Use the ITK zlib for pic compression." ON)
mark_as_advanced(USE_ITKZLIB)
if(NOT MITK_FAST_TESTING)
if(DEFINED MITK_CTEST_SCRIPT_MODE
AND (MITK_CTEST_SCRIPT_MODE STREQUAL "continuous" OR MITK_CTEST_SCRIPT_MODE STREQUAL "experimental") )
set(MITK_FAST_TESTING 1)
endif()
endif()
#-----------------------------------------------------------------------------
# Get MITK version info
#-----------------------------------------------------------------------------
mitkFunctionGetVersion(${MITK_SOURCE_DIR} MITK)
mitkFunctionGetVersionDescription(${MITK_SOURCE_DIR} MITK)
#-----------------------------------------------------------------------------
# Installation preparation
#
# These should be set before any MITK install macros are used
#-----------------------------------------------------------------------------
# on Mac OSX all BlueBerry plugins get copied into every
# application bundle (.app directory) specified here
if(MITK_USE_BLUEBERRY AND APPLE)
include("${CMAKE_CURRENT_SOURCE_DIR}/Applications/AppList.cmake")
foreach(mitk_app ${MITK_APPS})
# extract option_name
string(REPLACE "^^" "\\;" target_info ${mitk_app})
set(target_info_list ${target_info})
list(GET target_info_list 1 option_name)
list(GET target_info_list 0 app_name)
# check if the application is enabled
if(${option_name} OR MITK_BUILD_ALL_APPS)
set(MACOSX_BUNDLE_NAMES ${MACOSX_BUNDLE_NAMES} ${app_name})
endif()
endforeach()
endif()
#-----------------------------------------------------------------------------
# Set symbol visibility Flags
#-----------------------------------------------------------------------------
# MinGW does not export all symbols automatically, so no need to set flags
if(CMAKE_COMPILER_IS_GNUCXX AND NOT MINGW)
set(VISIBILITY_CXX_FLAGS ) #"-fvisibility=hidden -fvisibility-inlines-hidden")
endif()
#-----------------------------------------------------------------------------
# Set coverage Flags
#-----------------------------------------------------------------------------
if(WITH_COVERAGE)
if("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
set(coverage_flags "-g -fprofile-arcs -ftest-coverage -O0 -DNDEBUG")
set(COVERAGE_CXX_FLAGS ${coverage_flags})
set(COVERAGE_C_FLAGS ${coverage_flags})
endif()
endif()
#-----------------------------------------------------------------------------
# MITK C/CXX Flags
#-----------------------------------------------------------------------------
set(MITK_C_FLAGS "${COVERAGE_C_FLAGS} ${ADDITIONAL_C_FLAGS}")
set(MITK_CXX_FLAGS "${VISIBILITY_CXX_FLAGS} ${COVERAGE_CXX_FLAGS} ${ADDITIONAL_CXX_FLAGS}")
include(mitkSetupC++0xVariables)
set(cflags )
if(WIN32)
set(cflags "${cflags} -DPOCO_NO_UNWINDOWS -DWIN32_LEAN_AND_MEAN")
endif()
if(CMAKE_COMPILER_IS_GNUCXX)
set(cflags "${cflags} -Wall -Wextra -Wpointer-arith -Winvalid-pch -Wcast-align -Wwrite-strings")
mitkFunctionCheckCompilerFlags("-fdiagnostics-show-option" cflags)
mitkFunctionCheckCompilerFlags("-Wl,--no-undefined" cflags)
mitkFunctionCheckCompilerFlags("-Wl,--as-needed" cflags)
if(MITK_USE_C++0x)
mitkFunctionCheckCompilerFlags("-std=c++0x" MITK_CXX_FLAGS)
endif()
mitkFunctionGetGccVersion(${CMAKE_CXX_COMPILER} GCC_VERSION)
# With older version of gcc supporting the flag -fstack-protector-all, an extra dependency to libssp.so
# is introduced. If gcc is smaller than 4.4.0 and the build type is Release let's not include the flag.
# Doing so should allow to build package made for distribution using older linux distro.
if(${GCC_VERSION} VERSION_GREATER "4.4.0" OR (CMAKE_BUILD_TYPE STREQUAL "Debug" AND ${GCC_VERSION} VERSION_LESS "4.4.0"))
mitkFunctionCheckCompilerFlags("-fstack-protector-all" cflags)
endif()
if(MINGW)
# suppress warnings about auto imported symbols
set(MITK_CXX_FLAGS "-Wl,--enable-auto-import ${MITK_CXX_FLAGS}")
# we need to define a Windows version
set(MITK_CXX_FLAGS "-D_WIN32_WINNT=0x0500 ${MITK_CXX_FLAGS}")
endif()
#set(MITK_CXX_FLAGS "-Woverloaded-virtual -Wold-style-cast -Wstrict-null-sentinel -Wsign-promo ${MITK_CXX_FLAGS}")
set(MITK_CXX_FLAGS "-Woverloaded-virtual -Wstrict-null-sentinel ${MITK_CXX_FLAGS}")
set(MITK_CXX_FLAGS_RELEASE "-D_FORTIFY_SOURCE=2 ${MITK_CXX_FLAGS_RELEASE}")
endif()
set(MITK_C_FLAGS "${cflags} ${MITK_C_FLAGS}")
set(MITK_CXX_FLAGS "${cflags} ${MITK_CXX_FLAGS}")
#-----------------------------------------------------------------------------
# MITK Packages
#-----------------------------------------------------------------------------
set(MITK_MODULES_PACKAGE_DEPENDS_DIR ${MITK_SOURCE_DIR}/CMake/PackageDepends)
set(MODULES_PACKAGE_DEPENDS_DIRS ${MITK_MODULES_PACKAGE_DEPENDS_DIR})
#-----------------------------------------------------------------------------
# Testing
#-----------------------------------------------------------------------------
if(BUILD_TESTING)
enable_testing()
include(CTest)
mark_as_advanced(TCL_TCLSH DART_ROOT)
option(MITK_ENABLE_GUI_TESTING OFF "Enable the MITK GUI tests")
# Setup file for setting custom ctest vars
configure_file(
CMake/CTestCustom.cmake.in
${MITK_BINARY_DIR}/CTestCustom.cmake
@ONLY
)
# Configuration for the CMake-generated test driver
set(CMAKE_TESTDRIVER_EXTRA_INCLUDES "#include <stdexcept>")
set(CMAKE_TESTDRIVER_BEFORE_TESTMAIN "
try
{")
set(CMAKE_TESTDRIVER_AFTER_TESTMAIN " }
catch( std::exception & excp )
{
fprintf(stderr,\"%s\\n\",excp.what());
return EXIT_FAILURE;
}
catch( ... )
{
printf(\"Exception caught in the test driver\\n\");
return EXIT_FAILURE;
}
")
set(MITK_TEST_OUTPUT_DIR "${MITK_BINARY_DIR}/test_output")
if(NOT EXISTS ${MITK_TEST_OUTPUT_DIR})
file(MAKE_DIRECTORY ${MITK_TEST_OUTPUT_DIR})
endif()
# Test the external project template
if(MITK_USE_BLUEBERRY)
include(mitkTestProjectTemplate)
endif()
# Test the package target
include(mitkPackageTest)
endif()
configure_file(mitkTestingConfig.h.in ${MITK_BINARY_DIR}/mitkTestingConfig.h)
#-----------------------------------------------------------------------------
# MITK_SUPERBUILD_BINARY_DIR
#-----------------------------------------------------------------------------
# If MITK_SUPERBUILD_BINARY_DIR isn't defined, it means MITK is *NOT* build using Superbuild.
# In that specific case, MITK_SUPERBUILD_BINARY_DIR should default to MITK_BINARY_DIR
if(NOT DEFINED MITK_SUPERBUILD_BINARY_DIR)
set(MITK_SUPERBUILD_BINARY_DIR ${MITK_BINARY_DIR})
endif()
#-----------------------------------------------------------------------------
# Compile Utilities and set-up MITK variables
#-----------------------------------------------------------------------------
include(mitkSetupVariables)
#-----------------------------------------------------------------------------
# Cleanup
#-----------------------------------------------------------------------------
file(GLOB _MODULES_CONF_FILES ${PROJECT_BINARY_DIR}/${MODULES_CONF_DIRNAME}/*.cmake)
if(_MODULES_CONF_FILES)
file(REMOVE ${_MODULES_CONF_FILES})
endif()
add_subdirectory(Utilities)
if(MITK_USE_BLUEBERRY)
# We need to hack a little bit because MITK applications may need
# to enable certain BlueBerry plug-ins. However, these plug-ins
# are validated separately from the MITK plug-ins and know nothing
# about potential MITK plug-in dependencies of the applications. Hence
# we cannot pass the MITK application list to the BlueBerry
# ctkMacroSetupPlugins call but need to extract the BlueBerry dependencies
# from the applications and set them explicitly.
include("${CMAKE_CURRENT_SOURCE_DIR}/Applications/AppList.cmake")
foreach(mitk_app ${MITK_APPS})
# extract target_dir and option_name
string(REPLACE "^^" "\\;" target_info ${mitk_app})
set(target_info_list ${target_info})
list(GET target_info_list 0 target_dir)
list(GET target_info_list 1 option_name)
# check if the application is enabled and if target_libraries.cmake exists
if((${option_name} OR MITK_BUILD_ALL_APPS) AND EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/Applications/${target_dir}/target_libraries.cmake")
include("${CMAKE_CURRENT_SOURCE_DIR}/Applications/${target_dir}/target_libraries.cmake")
foreach(_target_dep ${target_libraries})
if(_target_dep MATCHES org_blueberry_)
string(REPLACE _ . _app_bb_dep ${_target_dep})
# explicitly set the build option for the BlueBerry plug-in
set(BLUEBERRY_BUILD_${_app_bb_dep} ON CACHE BOOL "Build the ${_app_bb_dep} plug-in")
endif()
endforeach()
endif()
endforeach()
set(mbilog_DIR "${mbilog_BINARY_DIR}")
if(MITK_BUILD_ALL_PLUGINS)
set(BLUEBERRY_BUILD_ALL_PLUGINS ON)
endif()
add_subdirectory(BlueBerry)
set(BlueBerry_DIR ${CMAKE_CURRENT_BINARY_DIR}/BlueBerry
CACHE PATH "The directory containing a CMake configuration file for BlueBerry" FORCE)
include(mitkMacroCreateCTKPlugin)
endif()
#-----------------------------------------------------------------------------
# Set C/CXX Flags for MITK code
#-----------------------------------------------------------------------------
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${MITK_CXX_FLAGS}")
set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} ${MITK_CXX_FLAGS_RELEASE}")
set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${MITK_C_FLAGS}")
if(MITK_USE_QT)
add_definitions(-DQWT_DLL)
endif()
#-----------------------------------------------------------------------------
# Add custom targets representing CDash subprojects
#-----------------------------------------------------------------------------
foreach(subproject ${CTEST_PROJECT_SUBPROJECTS})
if(NOT TARGET ${subproject} AND NOT subproject MATCHES "Unlabeled")
add_custom_target(${subproject})
endif()
endforeach()
#-----------------------------------------------------------------------------
# Add subdirectories
#-----------------------------------------------------------------------------
link_directories(${MITK_LINK_DIRECTORIES})
add_subdirectory(Core)
add_subdirectory(Modules)
if(MITK_USE_BLUEBERRY)
find_package(BlueBerry REQUIRED)
set(MITK_DEFAULT_SUBPROJECTS MITK-Plugins)
# Plug-in testing (needs some work to be enabled again)
if(BUILD_TESTING)
include(berryTestingHelpers)
set(BLUEBERRY_UI_TEST_APP "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/CoreApp")
get_target_property(_is_macosx_bundle CoreApp MACOSX_BUNDLE)
if(APPLE AND _is_macosx_bundle)
set(BLUEBERRY_UI_TEST_APP "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/CoreApp.app/Contents/MacOS/CoreApp")
endif()
set(BLUEBERRY_TEST_APP_ID "org.mitk.qt.coreapplication")
endif()
include("${CMAKE_CURRENT_SOURCE_DIR}/Plugins/PluginList.cmake")
set(mitk_plugins_fullpath )
foreach(mitk_plugin ${MITK_EXT_PLUGINS})
list(APPEND mitk_plugins_fullpath Plugins/${mitk_plugin})
endforeach()
if(EXISTS ${MITK_PRIVATE_MODULES}/PluginList.cmake)
include(${MITK_PRIVATE_MODULES}/PluginList.cmake)
foreach(mitk_plugin ${MITK_PRIVATE_PLUGINS})
list(APPEND mitk_plugins_fullpath ${MITK_PRIVATE_MODULES}/${mitk_plugin})
endforeach()
endif()
# Specify which plug-ins belong to this project
macro(GetMyTargetLibraries all_target_libraries varname)
set(re_ctkplugin_mitk "^org_mitk_[a-zA-Z0-9_]+$")
set(re_ctkplugin_bb "^org_blueberry_[a-zA-Z0-9_]+$")
set(_tmp_list)
list(APPEND _tmp_list ${all_target_libraries})
ctkMacroListFilter(_tmp_list re_ctkplugin_mitk re_ctkplugin_bb OUTPUT_VARIABLE ${varname})
endmacro()
# Get infos about application directories and build options
include("${CMAKE_CURRENT_SOURCE_DIR}/Applications/AppList.cmake")
set(mitk_apps_fullpath )
foreach(mitk_app ${MITK_APPS})
list(APPEND mitk_apps_fullpath "${CMAKE_CURRENT_SOURCE_DIR}/Applications/${mitk_app}")
endforeach()
ctkMacroSetupPlugins(${mitk_plugins_fullpath}
BUILD_OPTION_PREFIX MITK_BUILD_
APPS ${mitk_apps_fullpath}
BUILD_ALL ${MITK_BUILD_ALL_PLUGINS}
COMPACT_OPTIONS)
set(MITK_PLUGIN_USE_FILE "${MITK_BINARY_DIR}/MitkPluginUseFile.cmake")
if(${PROJECT_NAME}_PLUGIN_LIBRARIES)
ctkFunctionGeneratePluginUseFile(${MITK_PLUGIN_USE_FILE})
else()
file(REMOVE ${MITK_PLUGIN_USE_FILE})
set(MITK_PLUGIN_USE_FILE )
endif()
endif()
# Construct a list of paths containing runtime directories
# for MITK applications on Windows
set(MITK_RUNTIME_PATH
"${VTK_LIBRARY_DIRS}/%VS_BUILD_TYPE%;${ITK_LIBRARY_DIRS}/%VS_BUILD_TYPE%;${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/%VS_BUILD_TYPE%"
)
if(QT4_FOUND)
set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${QT_LIBRARY_DIR}/../bin")
endif()
if(MITK_USE_BLUEBERRY)
set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${CTK_RUNTIME_LIBRARY_DIRS}/%VS_BUILD_TYPE%")
if(DEFINED CTK_PLUGIN_RUNTIME_OUTPUT_DIRECTORY)
if(IS_ABSOLUTE "${CTK_PLUGIN_RUNTIME_OUTPUT_DIRECTORY}")
set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${CTK_PLUGIN_RUNTIME_OUTPUT_DIRECTORY}/%VS_BUILD_TYPE%")
else()
set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${CTK_PLUGIN_RUNTIME_OUTPUT_DIRECTORY}/%VS_BUILD_TYPE%")
endif()
else()
set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/plugins/%VS_BUILD_TYPE%")
endif()
endif()
if(GDCM_DIR)
set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${GDCM_DIR}/bin/%VS_BUILD_TYPE%")
endif()
if(OpenCV_DIR)
set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${OpenCV_DIR}/bin/%VS_BUILD_TYPE%")
endif()
# DCMTK is statically build
#if(DCMTK_DIR)
# set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${DCMTK_DIR}/bin/%VS_BUILD_TYPE%")
#endif()
if(MITK_USE_Boost AND MITK_USE_Boost_LIBRARIES AND NOT MITK_USE_SYSTEM_Boost)
set(MITK_RUNTIME_PATH "${MITK_RUNTIME_PATH};${Boost_LIBRARY_DIRS}")
endif()
#-----------------------------------------------------------------------------
# Python Wrapping
#-----------------------------------------------------------------------------
-
-set(MITK_WRAPPING_SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/Wrapping)
-set(MITK_WRAPPING_BINARY_DIR ${CMAKE_CURRENT_BINARY_DIR}/Wrapping)
-option(MITK_USE_Python "Build Python integration for MITK)." OFF)
+option(MITK_USE_Python "Build Python integration for MITK (requires CableSwig)." OFF)
#-----------------------------------------------------------------------------
# Documentation
#-----------------------------------------------------------------------------
add_subdirectory(Documentation)
#-----------------------------------------------------------------------------
# Installation
#-----------------------------------------------------------------------------
# set MITK cpack variables
# These are the default variables, which can be overwritten ( see below )
include(mitkSetupCPack)
set(use_default_config ON)
# MITK_APPS is set in Applications/AppList.cmake (included somewhere above
# if MITK_USE_BLUEBERRY is set to ON).
if(MITK_APPS)
set(activated_apps_no 0)
list(LENGTH MITK_APPS app_count)
# Check how many apps have been enabled
# If more than one app has been activated, the we use the
# default CPack configuration. Otherwise that apps configuration
# will be used, if present.
foreach(mitk_app ${MITK_APPS})
# extract option_name
string(REPLACE "^^" "\\;" target_info ${mitk_app})
set(target_info_list ${target_info})
list(GET target_info_list 1 option_name)
# check if the application is enabled
if(${option_name} OR MITK_BUILD_ALL_APPS)
MATH(EXPR activated_apps_no "${activated_apps_no} + 1")
endif()
endforeach()
if(app_count EQUAL 1 AND (activated_apps_no EQUAL 1 OR MITK_BUILD_ALL_APPS))
# Corner case if there is only one app in total
set(use_project_cpack ON)
elseif(activated_apps_no EQUAL 1 AND NOT MITK_BUILD_ALL_APPS)
# Only one app is enabled (no "build all" flag set)
set(use_project_cpack ON)
else()
# Less or more then one app is enabled
set(use_project_cpack OFF)
endif()
foreach(mitk_app ${MITK_APPS})
# extract target_dir and option_name
string(REPLACE "^^" "\\;" target_info ${mitk_app})
set(target_info_list ${target_info})
list(GET target_info_list 0 target_dir)
list(GET target_info_list 1 option_name)
# check if the application is enabled
if(${option_name} OR MITK_BUILD_ALL_APPS)
# check whether application specific configuration files will be used
if(use_project_cpack)
# use files if they exist
if(EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/Applications/${target_dir}/CPackOptions.cmake")
include("${CMAKE_CURRENT_SOURCE_DIR}/Applications/${target_dir}/CPackOptions.cmake")
endif()
if(EXISTS "${PROJECT_SOURCE_DIR}/Applications/${target_dir}/CPackConfig.cmake.in")
set(CPACK_PROJECT_CONFIG_FILE "${PROJECT_BINARY_DIR}/Applications/${target_dir}/CPackConfig.cmake")
configure_file(${PROJECT_SOURCE_DIR}/Applications/${target_dir}/CPackConfig.cmake.in
${CPACK_PROJECT_CONFIG_FILE} @ONLY)
set(use_default_config OFF)
endif()
endif()
# add link to the list
list(APPEND CPACK_CREATE_DESKTOP_LINKS "${target_dir}")
endif()
endforeach()
endif()
# if no application specific configuration file was used, use default
if(use_default_config)
configure_file(${MITK_SOURCE_DIR}/MITKCPackOptions.cmake.in
${MITK_BINARY_DIR}/MITKCPackOptions.cmake @ONLY)
set(CPACK_PROJECT_CONFIG_FILE "${MITK_BINARY_DIR}/MITKCPackOptions.cmake")
endif()
# include CPack model once all variables are set
include(CPack)
# Additional installation rules
include(mitkInstallRules)
#-----------------------------------------------------------------------------
# Last configuration steps
#-----------------------------------------------------------------------------
# This is for installation support of external projects depending on
# MITK plugins and modules. The export file should not be used for linking to MITK
# libraries without using LINK_DIRECTORIES, since the exports are incomplete
# yet (depending libraries are not exported).
set(MITK_EXPORTS_FILE "${MITK_BINARY_DIR}/MitkExports.cmake")
file(REMOVE ${MITK_EXPORTS_FILE})
set(targets_to_export)
get_property(module_targets GLOBAL PROPERTY MITK_MODULE_TARGETS)
if(module_targets)
list(APPEND targets_to_export ${module_targets})
endif()
if(MITK_USE_BLUEBERRY)
if(MITK_PLUGIN_LIBRARIES)
list(APPEND targets_to_export ${MITK_PLUGIN_LIBRARIES})
endif()
endif()
export(TARGETS ${targets_to_export} APPEND
FILE ${MITK_EXPORTS_FILE})
set(MITK_EXPORTED_TARGET_PROPERTIES )
foreach(target_to_export ${targets_to_export})
get_target_property(autoload_targets ${target_to_export} MITK_AUTOLOAD_TARGETS)
if(autoload_targets)
set(MITK_EXPORTED_TARGET_PROPERTIES "${MITK_EXPORTED_TARGET_PROPERTIES}
set_target_properties(${target_to_export} PROPERTIES MITK_AUTOLOAD_TARGETS \"${autoload_targets}\")")
endif()
get_target_property(autoload_dir ${target_to_export} MITK_AUTOLOAD_DIRECTORY)
if(autoload_dir)
set(MITK_EXPORTED_TARGET_PROPERTIES "${MITK_EXPORTED_TARGET_PROPERTIES}
set_target_properties(${target_to_export} PROPERTIES MITK_AUTOLOAD_DIRECTORY \"${autoload_dir}\")")
endif()
endforeach()
configure_file(${MITK_SOURCE_DIR}/CMake/ToolExtensionITKFactory.cpp.in
${MITK_BINARY_DIR}/ToolExtensionITKFactory.cpp.in COPYONLY)
configure_file(${MITK_SOURCE_DIR}/CMake/ToolExtensionITKFactoryLoader.cpp.in
${MITK_BINARY_DIR}/ToolExtensionITKFactoryLoader.cpp.in COPYONLY)
configure_file(${MITK_SOURCE_DIR}/CMake/ToolGUIExtensionITKFactory.cpp.in
${MITK_BINARY_DIR}/ToolGUIExtensionITKFactory.cpp.in COPYONLY)
set(VISIBILITY_AVAILABLE 0)
set(visibility_test_flag "")
mitkFunctionCheckCompilerFlags("-fvisibility=hidden" visibility_test_flag)
if(visibility_test_flag)
# The compiler understands -fvisiblity=hidden (probably gcc >= 4 or Clang)
set(VISIBILITY_AVAILABLE 1)
endif()
configure_file(mitkExportMacros.h.in ${MITK_BINARY_DIR}/mitkExportMacros.h)
configure_file(mitkVersion.h.in ${MITK_BINARY_DIR}/mitkVersion.h)
configure_file(mitkConfig.h.in ${MITK_BINARY_DIR}/mitkConfig.h)
set(VECMATH_INCLUDE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/Utilities/vecmath)
set(IPFUNC_INCLUDE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/Utilities/ipFunc)
set(UTILITIES_DIR ${CMAKE_CURRENT_SOURCE_DIR}/Utilities)
file(GLOB _MODULES_CONF_FILES RELATIVE ${PROJECT_BINARY_DIR}/${MODULES_CONF_DIRNAME} ${PROJECT_BINARY_DIR}/${MODULES_CONF_DIRNAME}/*.cmake)
set(MITK_MODULE_NAMES)
foreach(_module ${_MODULES_CONF_FILES})
string(REPLACE Config.cmake "" _module_name ${_module})
list(APPEND MITK_MODULE_NAMES ${_module_name})
endforeach()
configure_file(mitkConfig.h.in ${MITK_BINARY_DIR}/mitkConfig.h)
configure_file(MITKConfig.cmake.in ${MITK_BINARY_DIR}/MITKConfig.cmake @ONLY)
# If we are under Windows, create two batch files which correctly
# set up the environment for the application and for Visual Studio
if(WIN32)
include(mitkFunctionCreateWindowsBatchScript)
set(VS_SOLUTION_FILE "${PROJECT_BINARY_DIR}/${PROJECT_NAME}.sln")
foreach(VS_BUILD_TYPE debug release)
mitkFunctionCreateWindowsBatchScript("${MITK_SOURCE_DIR}/CMake/StartVS.bat.in"
${PROJECT_BINARY_DIR}/StartVS_${VS_BUILD_TYPE}.bat
${VS_BUILD_TYPE})
endforeach()
endif(WIN32)
#-----------------------------------------------------------------------------
# MITK Applications
#-----------------------------------------------------------------------------
# This must come after MITKConfig.h was generated, since applications
# might do a find_package(MITK REQUIRED).
add_subdirectory(Applications)
#-----------------------------------------------------------------------------
# MITK Examples
#-----------------------------------------------------------------------------
if(MITK_BUILD_EXAMPLES)
# This must come after MITKConfig.h was generated, since applications
# might do a find_package(MITK REQUIRED).
add_subdirectory(Examples)
endif()
diff --git a/Plugins/org.mitk.gui.qt.dicom/resources/dicom.qrc b/Plugins/org.mitk.gui.qt.dicom/resources/dicom.qrc
deleted file mode 100644
index 0cdc545472..0000000000
--- a/Plugins/org.mitk.gui.qt.dicom/resources/dicom.qrc
+++ /dev/null
@@ -1,11 +0,0 @@
-<RCC>
- <qresource prefix="/org.mitk.gui.qt.dicom" >
- <file>drive-harddisk_32.png</file>
- <file>folder_32.png</file>
- <file>media-optical_32.png</file>
- <file>network-workgroup_32.png</file>
- <file>network-idle_16.png</file>
- <file>network-offline_16.png</file>
- <file>network-error_16.png</file>
- </qresource>
-</RCC>
diff --git a/SuperBuild.cmake b/SuperBuild.cmake
index d3ddd4061d..0acf431a96 100644
--- a/SuperBuild.cmake
+++ b/SuperBuild.cmake
@@ -1,302 +1,303 @@
#-----------------------------------------------------------------------------
# Convenient macro allowing to download a file
#-----------------------------------------------------------------------------
macro(downloadFile url dest)
file(DOWNLOAD ${url} ${dest} STATUS status)
list(GET status 0 error_code)
list(GET status 1 error_msg)
if(error_code)
message(FATAL_ERROR "error: Failed to download ${url} - ${error_msg}")
endif()
endmacro()
#-----------------------------------------------------------------------------
# MITK Prerequisites
#-----------------------------------------------------------------------------
if(UNIX AND NOT APPLE)
include(mitkFunctionCheckPackageHeader)
# Check for libxt-dev
mitkFunctionCheckPackageHeader(StringDefs.h libxt-dev /usr/include/X11/)
# Check for libtiff4-dev
mitkFunctionCheckPackageHeader(tiff.h libtiff4-dev)
# Check for libwrap0-dev
mitkFunctionCheckPackageHeader(tcpd.h libwrap0-dev)
endif()
#-----------------------------------------------------------------------------
# ExternalProjects
#-----------------------------------------------------------------------------
set(external_projects
VTK
GDCM
+ CableSwig
ITK
Boost
DCMTK
CTK
OpenCV
MITKData
)
-
+set(MITK_USE_CableSwig ${MITK_USE_Python})
set(MITK_USE_GDCM 1)
set(MITK_USE_ITK 1)
set(MITK_USE_VTK 1)
-foreach(proj VTK GDCM ITK DCMTK CTK OpenCV)
+foreach(proj VTK GDCM CableSwig ITK DCMTK CTK OpenCV)
if(MITK_USE_${proj})
set(EXTERNAL_${proj}_DIR "${${proj}_DIR}" CACHE PATH "Path to ${proj} build directory")
mark_as_advanced(EXTERNAL_${proj}_DIR)
if(EXTERNAL_${proj}_DIR)
set(${proj}_DIR ${EXTERNAL_${proj}_DIR})
endif()
endif()
endforeach()
if(MITK_USE_Boost)
set(EXTERNAL_BOOST_ROOT "${BOOST_ROOT}" CACHE PATH "Path to Boost directory")
mark_as_advanced(EXTERNAL_BOOST_ROOT)
if(EXTERNAL_BOOST_ROOT)
set(BOOST_ROOT ${EXTERNAL_BOOST_ROOT})
endif()
endif()
if(BUILD_TESTING)
set(EXTERNAL_MITK_DATA_DIR "${MITK_DATA_DIR}" CACHE PATH "Path to the MITK data directory")
mark_as_advanced(EXTERNAL_MITK_DATA_DIR)
if(EXTERNAL_MITK_DATA_DIR)
set(MITK_DATA_DIR ${EXTERNAL_MITK_DATA_DIR})
endif()
endif()
# Look for git early on, if needed
if((BUILD_TESTING AND NOT EXTERNAL_MITK_DATA_DIR) OR
(MITK_USE_CTK AND NOT EXTERNAL_CTK_DIR))
find_package(Git REQUIRED)
endif()
#-----------------------------------------------------------------------------
# External project settings
#-----------------------------------------------------------------------------
include(ExternalProject)
set(ep_base "${CMAKE_BINARY_DIR}/CMakeExternals")
set_property(DIRECTORY PROPERTY EP_BASE ${ep_base})
set(ep_install_dir ${ep_base}/Install)
#set(ep_build_dir ${ep_base}/Build)
set(ep_source_dir ${ep_base}/Source)
#set(ep_parallelism_level)
set(ep_build_shared_libs ON)
set(ep_build_testing OFF)
if(NOT MITK_THIRDPARTY_DOWNLOAD_PREFIX_URL)
set(MITK_THIRDPARTY_DOWNLOAD_PREFIX_URL http://mitk.org/download/thirdparty)
endif()
# Compute -G arg for configuring external projects with the same CMake generator:
if(CMAKE_EXTRA_GENERATOR)
set(gen "${CMAKE_EXTRA_GENERATOR} - ${CMAKE_GENERATOR}")
else()
set(gen "${CMAKE_GENERATOR}")
endif()
# Use this value where semi-colons are needed in ep_add args:
set(sep "^^")
##
if(MSVC90 OR MSVC10)
set(ep_common_C_FLAGS "${CMAKE_C_FLAGS} /bigobj /MP")
set(ep_common_CXX_FLAGS "${CMAKE_CXX_FLAGS} /bigobj /MP")
else()
set(ep_common_C_FLAGS "${CMAKE_C_FLAGS} -DLINUX_EXTRA")
set(ep_common_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DLINUX_EXTRA")
endif()
set(ep_common_args
-DBUILD_TESTING:BOOL=${ep_build_testing}
-DCMAKE_INSTALL_PREFIX:PATH=${ep_install_dir}
-DBUILD_SHARED_LIBS:BOOL=ON
-DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE}
-DCMAKE_C_COMPILER:FILEPATH=${CMAKE_C_COMPILER}
-DCMAKE_CXX_COMPILER:FILEPATH=${CMAKE_CXX_COMPILER}
-DCMAKE_C_FLAGS:STRING=${ep_common_C_FLAGS}
-DCMAKE_CXX_FLAGS:STRING=${ep_common_CXX_FLAGS}
#debug flags
-DCMAKE_CXX_FLAGS_DEBUG:STRING=${CMAKE_CXX_FLAGS_DEBUG}
-DCMAKE_C_FLAGS_DEBUG:STRING=${CMAKE_C_FLAGS_DEBUG}
#release flags
-DCMAKE_CXX_FLAGS_RELEASE:STRING=${CMAKE_CXX_FLAGS_RELEASE}
-DCMAKE_C_FLAGS_RELEASE:STRING=${CMAKE_C_FLAGS_RELEASE}
#relwithdebinfo
-DCMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=${CMAKE_CXX_FLAGS_RELWITHDEBINFO}
-DCMAKE_C_FLAGS_RELWITHDEBINFO:STRING=${CMAKE_C_FLAGS_RELWITHDEBINFO}
)
# Include external projects
foreach(p ${external_projects})
include(CMakeExternals/${p}.cmake)
endforeach()
#-----------------------------------------------------------------------------
# Set superbuild boolean args
#-----------------------------------------------------------------------------
set(mitk_cmake_boolean_args
BUILD_SHARED_LIBS
WITH_COVERAGE
BUILD_TESTING
MITK_USE_QT
MITK_BUILD_ALL_PLUGINS
MITK_BUILD_ALL_APPS
MITK_BUILD_TUTORIAL # Deprecated. Use MITK_BUILD_EXAMPLES instead
MITK_BUILD_EXAMPLES
MITK_USE_Boost
MITK_USE_SYSTEM_Boost
MITK_USE_BLUEBERRY
MITK_USE_CTK
MITK_USE_DCMTK
MITK_DCMTK_BUILD_SHARED_LIBS
MITK_USE_OpenCV
MITK_USE_Python
MITK_USE_OpenCL
)
#-----------------------------------------------------------------------------
# Create the final variable containing superbuild boolean args
#-----------------------------------------------------------------------------
set(mitk_superbuild_boolean_args)
foreach(mitk_cmake_arg ${mitk_cmake_boolean_args})
list(APPEND mitk_superbuild_boolean_args -D${mitk_cmake_arg}:BOOL=${${mitk_cmake_arg}})
endforeach()
if(MITK_BUILD_ALL_PLUGINS)
list(APPEND mitk_superbuild_boolean_args -DBLUEBERRY_BUILD_ALL_PLUGINS:BOOL=ON)
endif()
#-----------------------------------------------------------------------------
# MITK Utilities
#-----------------------------------------------------------------------------
set(proj MITK-Utilities)
ExternalProject_Add(${proj}
DOWNLOAD_COMMAND ""
CONFIGURE_COMMAND ""
BUILD_COMMAND ""
INSTALL_COMMAND ""
DEPENDS
# Mandatory dependencies
${VTK_DEPENDS}
${ITK_DEPENDS}
# Optionnal dependencies
${Boost_DEPENDS}
${CTK_DEPENDS}
${DCMTK_DEPENDS}
${OpenCV_DEPENDS}
${MITK-Data_DEPENDS}
)
#-----------------------------------------------------------------------------
# MITK Configure
#-----------------------------------------------------------------------------
if(MITK_INITIAL_CACHE_FILE)
set(mitk_initial_cache_arg -C "${MITK_INITIAL_CACHE_FILE}")
endif()
set(mitk_optional_cache_args )
foreach(type RUNTIME ARCHIVE LIBRARY)
if(DEFINED CTK_PLUGIN_${type}_OUTPUT_DIRECTORY)
list(APPEND mitk_optional_cache_args -DCTK_PLUGIN_${type}_OUTPUT_DIRECTORY:PATH=${CTK_PLUGIN_${type}_OUTPUT_DIRECTORY})
endif()
endforeach()
set(proj MITK-Configure)
ExternalProject_Add(${proj}
LIST_SEPARATOR ^^
DOWNLOAD_COMMAND ""
CMAKE_GENERATOR ${gen}
CMAKE_CACHE_ARGS
${ep_common_args}
${mitk_superbuild_boolean_args}
${mitk_optional_cache_args}
-DMITK_USE_SUPERBUILD:BOOL=OFF
-DMITK_CMAKE_LIBRARY_OUTPUT_DIRECTORY:PATH=${MITK_CMAKE_LIBRARY_OUTPUT_DIRECTORY}
-DMITK_CMAKE_RUNTIME_OUTPUT_DIRECTORY:PATH=${MITK_CMAKE_RUNTIME_OUTPUT_DIRECTORY}
-DMITK_CMAKE_ARCHIVE_OUTPUT_DIRECTORY:PATH=${MITK_CMAKE_ARCHIVE_OUTPUT_DIRECTORY}
-DCTEST_USE_LAUNCHERS:BOOL=${CTEST_USE_LAUNCHERS}
-DMITK_CTEST_SCRIPT_MODE:STRING=${MITK_CTEST_SCRIPT_MODE}
-DMITK_SUPERBUILD_BINARY_DIR:PATH=${MITK_BINARY_DIR}
-DQT_QMAKE_EXECUTABLE:FILEPATH=${QT_QMAKE_EXECUTABLE}
-DMITK_KWSTYLE_EXECUTABLE:FILEPATH=${MITK_KWSTYLE_EXECUTABLE}
-DMITK_MODULES_TO_BUILD:INTERNAL=${MITK_MODULES_TO_BUILD}
-DCTK_DIR:PATH=${CTK_DIR}
-DDCMTK_DIR:PATH=${DCMTK_DIR}
-DVTK_DIR:PATH=${VTK_DIR} # FindVTK expects VTK_DIR
-DITK_DIR:PATH=${ITK_DIR} # FindITK expects ITK_DIR
-DOpenCV_DIR:PATH=${OpenCV_DIR}
-DGDCM_DIR:PATH=${GDCM_DIR}
-DBOOST_ROOT:PATH=${BOOST_ROOT}
-DMITK_USE_Boost_LIBRARIES:STRING=${MITK_USE_Boost_LIBRARIES}
-DMITK_DATA_DIR:PATH=${MITK_DATA_DIR}
-DMITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES:STRING=${MITK_ACCESSBYITK_INTEGRAL_PIXEL_TYPES}
-DMITK_ACCESSBYITK_FLOATING_PIXEL_TYPES:STRING=${MITK_ACCESSBYITK_FLOATING_PIXEL_TYPES}
-DMITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES:STRING=${MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES}
-DMITK_ACCESSBYITK_DIMENSIONS:STRING=${MITK_ACCESSBYITK_DIMENSIONS}
CMAKE_ARGS
${mitk_initial_cache_arg}
SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}
BINARY_DIR ${CMAKE_BINARY_DIR}/MITK-build
BUILD_COMMAND ""
INSTALL_COMMAND ""
DEPENDS
MITK-Utilities
)
#-----------------------------------------------------------------------------
# MITK
#-----------------------------------------------------------------------------
if(CMAKE_GENERATOR MATCHES ".*Makefiles.*")
set(mitk_build_cmd "$(MAKE)")
else()
set(mitk_build_cmd ${CMAKE_COMMAND} --build ${CMAKE_CURRENT_BINARY_DIR}/MITK-build --config ${CMAKE_CFG_INTDIR})
endif()
if(NOT DEFINED SUPERBUILD_EXCLUDE_MITKBUILD_TARGET OR NOT SUPERBUILD_EXCLUDE_MITKBUILD_TARGET)
set(MITKBUILD_TARGET_ALL_OPTION "ALL")
else()
set(MITKBUILD_TARGET_ALL_OPTION "")
endif()
add_custom_target(MITK-build ${MITKBUILD_TARGET_ALL_OPTION}
COMMAND ${mitk_build_cmd}
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/MITK-build
DEPENDS MITK-Configure
)
#-----------------------------------------------------------------------------
# Custom target allowing to drive the build of the MITK project itself
#-----------------------------------------------------------------------------
add_custom_target(MITK
COMMAND ${mitk_build_cmd}
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/MITK-build
)