Description

mitkDiffusion.cmake

mitkFiberfox.cmake

CMakeExternals/

Caffe.cmake

Modules/

DiffusionImaging/

Connectomics/

cmdapps

	Connectomics/	cmdapps/
	DiffusionCore/	cmdapps/

CaffeSegmentationTest.cpp

	Connectomics/	cmdapps/
		cmdapps/

NetworkCreation.cpp

NetworkStatistics.cpp

DeepDiffusion/

cmdapps/

Caffe2Test.cpp

CaffeTest.cpp

DiffusionCore/

cmdapps/

TensorDerivedMapsExtraction.cpp

CopyGeometry.cpp

DiffusionDICOMLoader.cpp

DiffusionIndices.cpp

DiffusionKurtosisFit.cpp

DwiDenoising.cpp

ExportShImage.cpp

ImageResampler.cpp

QballReconstruction.cpp

Registration.cpp

TensorReconstruction.cpp

	DiffusionCore/	cmdapps/
		cmdapps/

Dicom2Nrrd.cpp

ResampleGradients.cpp

FiberTracking/

Algorithms/

TrackingHandlers/

mitkTrackingHandlerPeaks.cpp

itkStreamlineTrackingFilter.cpp

TractographyEvaluation

	FiberTracking/	cmdapps/
		cmdapps/

	FiberProcessing/

FiberDirectionExtraction.cpp

	Fiberfox/

Fiberfox.cpp

	Misc/

FileFormatConverter.cpp

PeakExtraction.cpp

	Tractography/

GibbsTracking.cpp

RfTraining.cpp

StreamlineTracking.cpp

	TractographyEvaluation/

LocalDirectionalFiberPlausibility.cpp

PeaksAngularError.cpp

TractometerMetrics.cpp

	FiberTracking/	cmdapps/
	DiffusionCore/	cmdapps/

	Fiberfox/

	Misc/

	Tractography/

	TractographyEvaluation/

Quantification/

cmdapps

	Quantification/	cmdapps/
	DiffusionCore/	cmdapps/

TensorDerivedMapsExtraction.cpp

DiffusionIndices.cpp

DiffusionKurtosisFit.cpp

QballReconstruction.cpp

TensorReconstruction.cpp

	Quantification/	cmdapps/
		cmdapps/

MultishellMethods.cpp

DiffusionMiniApps.dox

ExtractImageStatistics.cpp

FiberDirectionExtraction.cpp

FileFormatConverter.cpp

GibbsTracking.cpp

HotspotMiniApp.cpp

ImageStatisticsMiniApp.cpp

ImageStatisticsMiniapp_3.cpp

ImageStatisticsMiniapp_v2.cpp

LocalDirectionalFiberPlausibility.cpp

MultishellMethods.cpp

NetworkCreation.cpp

NetworkStatistics.cpp

PeakExtraction.cpp

PeaksAngularError.cpp

PlanarFigureMaskCreatorMiniapp.cpp

ResampleGradients.cpp

RfTraining.cpp

Sift2WeightCopy.cpp

StreamlineTracking.cpp

TractDensity.cpp

TractometerMetrics.cpp

Plugins/

org.mitk.gui.qt.diffusionimaging.connectomics/

files.cmake

QmitkConnectomicsPerspective.h

resources/

parcellation.png

src/

internal/

Perspectives

mitkPluginActivator.cpp

	org.mitk.gui.qt.diffusionimaging.connectomics/	src/	internal/	Perspectives/
	org.mitk.gui.qt.diffusionimaging.ivim/	src/	internal/	Perspectives/

	QmitkConnectomicsPerspective.cpp
	QmitkDIAppIVIMPerspective.cpp

org.mitk.gui.qt.diffusionimaging.fiberfox/

src/

internal/

QmitkFiberfoxViewControls.ui

org.mitk.gui.qt.diffusionimaging.fiberprocessing/

org.mitk.gui.qt.diffusionimaging.ivim/

QmitkDIAppIVIMPerspective.cpp

src/

internal/

Perspectives/

QmitkIVIMViewControls.ui

org.mitk.gui.qt.diffusionimaging.reconstruction/

files.cmake

QmitkReconstructionPerspective.h

src/

internal/

Perspectives

mitkPluginActivator.cpp

	org.mitk.gui.qt.diffusionimaging.reconstruction/	src/	internal/	Perspectives/
	org.mitk.gui.qt.diffusionimaging.tractography/	src/	internal/	Perspectives/

	QmitkReconstructionPerspective.cpp
	QmitkGibbsTractographyPerspective.cpp

org.mitk.gui.qt.diffusionimaging.tractography/

documentation/

UserManual/

QmitkGibbsTrackingViewUserManual.dox

QmitkMLBTViewUserManual.dox

QmitkStreamlineTrackingViewUserManual.dox

QmitkGibbsTractographyPerspective.cpp

src/

internal/

Perspectives/

QmitkMachineLearningTractographyPerspective.cpp

QmitkStreamlineTractographyPerspective.cpp

QmitkMLBTView.cpp

QmitkMLBTViewControls.ui

QmitkStreamlineTrackingView.cpp

QmitkStreamlineTrackingViewControls.ui

rMITKdf0068447d1e

CMake/BuildConfigurations/All.cmake

CMake/BuildConfigurations/mitkDiffusion.cmake

CMake/BuildConfigurations/mitkFiberfox.cmake

CMakeExternals/Caffe.cmake

Modules/DiffusionImaging/CMakeLists.txt

Modules/DiffusionImaging/Connectomics/CMakeLists.txt

Modules/DiffusionImaging/Connectomics/cmdapps/CMakeLists.txt

Modules/DiffusionImaging/Connectomics/cmdapps/NetworkCreation.cpp

Modules/DiffusionImaging/Connectomics/cmdapps/NetworkStatistics.cpp

Modules/DiffusionImaging/DeepDiffusion/cmdapps/Caffe2Test.cpp

Modules/DiffusionImaging/DeepDiffusion/cmdapps/CaffeSegmentationTest.cpp

Modules/DiffusionImaging/DeepDiffusion/cmdapps/CaffeTest.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/CMakeLists.txt

Modules/DiffusionImaging/DiffusionCore/cmdapps/CopyGeometry.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/Dicom2Nrrd.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/DiffusionDICOMLoader.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/DiffusionIndices.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/DiffusionKurtosisFit.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/DwiDenoising.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/ExportShImage.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/ImageResampler.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/QballReconstruction.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/Registration.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/ResampleGradients.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/TensorDerivedMapsExtraction.cpp

Modules/DiffusionImaging/DiffusionCore/cmdapps/TensorReconstruction.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/TrackingHandlers/mitkTrackingHandlerPeaks.cpp

Modules/DiffusionImaging/FiberTracking/Algorithms/itkStreamlineTrackingFilter.cpp

Modules/DiffusionImaging/FiberTracking/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberDirectionExtraction.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberExtraction.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberJoin.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/FiberProcessing.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/Sift2WeightCopy.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/FiberProcessing/TractDensity.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/Fiberfox/Fiberfox.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/FileFormatConverter.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Misc/PeakExtraction.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/GibbsTracking.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/RfTraining.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/Tractography/StreamlineTracking.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/CMakeLists.txt

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/LocalDirectionalFiberPlausibility.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/PeaksAngularError.cpp

Modules/DiffusionImaging/FiberTracking/cmdapps/TractographyEvaluation/TractometerMetrics.cpp

Modules/DiffusionImaging/Quantification/CMakeLists.txt

Modules/DiffusionImaging/Quantification/cmdapps/CMakeLists.txt

Modules/DiffusionImaging/Quantification/cmdapps/DiffusionIndices.cpp

Modules/DiffusionImaging/Quantification/cmdapps/DiffusionKurtosisFit.cpp

Modules/DiffusionImaging/Quantification/cmdapps/MultishellMethods.cpp

Modules/DiffusionImaging/Quantification/cmdapps/QballReconstruction.cpp

Modules/DiffusionImaging/Quantification/cmdapps/TensorDerivedMapsExtraction.cpp

Modules/DiffusionImaging/Quantification/cmdapps/TensorReconstruction.cpp

Modules/DiffusionImaging/cmdapps

Modules/DiffusionImaging/cmdapps/CMakeLists.txt

Modules/DiffusionImaging/cmdapps/Dicom2Nrrd.cpp

Modules/DiffusionImaging/cmdapps/Documentation

Modules/DiffusionImaging/cmdapps/Documentation/DiffusionMiniApps.dox

Modules/DiffusionImaging/cmdapps/ExtractImageStatistics.cpp

Modules/DiffusionImaging/cmdapps/FiberDirectionExtraction.cpp

Modules/DiffusionImaging/cmdapps/FiberExtraction.cpp

Modules/DiffusionImaging/cmdapps/FiberJoin.cpp

Modules/DiffusionImaging/cmdapps/FiberProcessing.cpp

Modules/DiffusionImaging/cmdapps/Fiberfox.cpp

Modules/DiffusionImaging/cmdapps/FileFormatConverter.cpp

Modules/DiffusionImaging/cmdapps/GibbsTracking.cpp

Modules/DiffusionImaging/cmdapps/HotspotMiniApp.cpp

Modules/DiffusionImaging/cmdapps/ImageStatisticsMiniApp.cpp

Modules/DiffusionImaging/cmdapps/ImageStatisticsMiniapp_3.cpp

Modules/DiffusionImaging/cmdapps/ImageStatisticsMiniapp_v2.cpp

Modules/DiffusionImaging/cmdapps/LocalDirectionalFiberPlausibility.cpp

Modules/DiffusionImaging/cmdapps/MultishellMethods.cpp

Modules/DiffusionImaging/cmdapps/NetworkCreation.cpp

Modules/DiffusionImaging/cmdapps/NetworkStatistics.cpp

Modules/DiffusionImaging/cmdapps/PeakExtraction.cpp

Modules/DiffusionImaging/cmdapps/PeaksAngularError.cpp

Modules/DiffusionImaging/cmdapps/PlanarFigureMaskCreatorMiniapp.cpp

Modules/DiffusionImaging/cmdapps/ResampleGradients.cpp

Modules/DiffusionImaging/cmdapps/RfTraining.cpp

Modules/DiffusionImaging/cmdapps/Sift2WeightCopy.cpp

Modules/DiffusionImaging/cmdapps/StreamlineTracking.cpp

Modules/DiffusionImaging/cmdapps/TractDensity.cpp

Modules/DiffusionImaging/cmdapps/TractometerMetrics.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.connectomics/files.cmake

Plugins/org.mitk.gui.qt.diffusionimaging.connectomics/plugin.xml

Plugins/org.mitk.gui.qt.diffusionimaging.connectomics/resources/parcellation.png

Plugins/org.mitk.gui.qt.diffusionimaging.connectomics/src/internal/Perspectives/QmitkConnectomicsPerspective.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.connectomics/src/internal/Perspectives/QmitkConnectomicsPerspective.h

Plugins/org.mitk.gui.qt.diffusionimaging.connectomics/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.fiberfox/src/internal/QmitkFiberfoxViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging.fiberprocessing/plugin.xml

Plugins/org.mitk.gui.qt.diffusionimaging.ivim/plugin.xml

Plugins/org.mitk.gui.qt.diffusionimaging.ivim/src/internal/Perspectives/QmitkDIAppIVIMPerspective.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.ivim/src/internal/QmitkIVIMViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging.reconstruction/files.cmake

Plugins/org.mitk.gui.qt.diffusionimaging.reconstruction/plugin.xml

Plugins/org.mitk.gui.qt.diffusionimaging.reconstruction/src/internal/Perspectives/QmitkReconstructionPerspective.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.reconstruction/src/internal/Perspectives/QmitkReconstructionPerspective.h

Plugins/org.mitk.gui.qt.diffusionimaging.reconstruction/src/internal/mitkPluginActivator.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/documentation/UserManual/QmitkGibbsTrackingViewUserManual.dox

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/documentation/UserManual/QmitkMLBTViewUserManual.dox

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/documentation/UserManual/QmitkStreamlineTrackingViewUserManual.dox

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/plugin.xml

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/src/internal/Perspectives/QmitkGibbsTractographyPerspective.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/src/internal/Perspectives/QmitkMachineLearningTractographyPerspective.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/src/internal/Perspectives/QmitkStreamlineTractographyPerspective.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/src/internal/QmitkMLBTView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/src/internal/QmitkMLBTViewControls.ui

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/src/internal/QmitkStreamlineTrackingView.cpp

Plugins/org.mitk.gui.qt.diffusionimaging.tractography/src/internal/QmitkStreamlineTrackingViewControls.ui