diff --git a/Modules/Core/files.cmake b/Modules/Core/files.cmake index 5577f880ae..49db018347 100644 --- a/Modules/Core/files.cmake +++ b/Modules/Core/files.cmake @@ -1,321 +1,323 @@ file(GLOB_RECURSE H_FILES RELATIVE "${CMAKE_CURRENT_SOURCE_DIR}" "${CMAKE_CURRENT_SOURCE_DIR}/include/*") set(CPP_FILES mitkCoreActivator.cpp mitkCoreObjectFactoryBase.cpp mitkCoreObjectFactory.cpp mitkCoreServices.cpp mitkException.cpp Algorithms/mitkBaseDataSource.cpp Algorithms/mitkClippedSurfaceBoundsCalculator.cpp Algorithms/mitkCompareImageDataFilter.cpp Algorithms/mitkCompositePixelValueToString.cpp Algorithms/mitkConvert2Dto3DImageFilter.cpp Algorithms/mitkDataNodeSource.cpp Algorithms/mitkExtractSliceFilter.cpp Algorithms/mitkExtractSliceFilter2.cpp Algorithms/mitkHistogramGenerator.cpp Algorithms/mitkImageChannelSelector.cpp Algorithms/mitkImageSliceSelector.cpp Algorithms/mitkImageSource.cpp Algorithms/mitkImageTimeSelector.cpp Algorithms/mitkImageToImageFilter.cpp Algorithms/mitkImageToSurfaceFilter.cpp Algorithms/mitkMultiComponentImageDataComparisonFilter.cpp Algorithms/mitkPlaneGeometryDataToSurfaceFilter.cpp Algorithms/mitkPointSetSource.cpp Algorithms/mitkPointSetToPointSetFilter.cpp Algorithms/mitkRGBToRGBACastImageFilter.cpp Algorithms/mitkSubImageSelector.cpp Algorithms/mitkSurfaceSource.cpp Algorithms/mitkSurfaceToImageFilter.cpp Algorithms/mitkSurfaceToSurfaceFilter.cpp Algorithms/mitkUIDGenerator.cpp Algorithms/mitkVolumeCalculator.cpp Algorithms/mitkTemporalJoinImagesFilter.cpp Controllers/mitkBaseController.cpp Controllers/mitkCallbackFromGUIThread.cpp Controllers/mitkCameraController.cpp Controllers/mitkCameraRotationController.cpp + Controllers/mitkCrosshairManager.cpp Controllers/mitkLimitedLinearUndo.cpp Controllers/mitkOperationEvent.cpp Controllers/mitkPlanePositionManager.cpp Controllers/mitkProgressBar.cpp Controllers/mitkRenderingManager.cpp Controllers/mitkSliceNavigationController.cpp + Controllers/mitkSliceNavigationHelper.cpp Controllers/mitkStatusBar.cpp Controllers/mitkStepper.cpp Controllers/mitkTestManager.cpp Controllers/mitkUndoController.cpp Controllers/mitkVerboseLimitedLinearUndo.cpp Controllers/mitkVtkLayerController.cpp DataManagement/mitkAnatomicalStructureColorPresets.cpp DataManagement/mitkArbitraryTimeGeometry.cpp DataManagement/mitkAbstractTransformGeometry.cpp DataManagement/mitkAnnotationProperty.cpp DataManagement/mitkApplicationCursor.cpp DataManagement/mitkApplyTransformMatrixOperation.cpp DataManagement/mitkBaseData.cpp DataManagement/mitkBaseGeometry.cpp DataManagement/mitkBaseProperty.cpp DataManagement/mitkChannelDescriptor.cpp DataManagement/mitkClippingProperty.cpp DataManagement/mitkColorProperty.cpp DataManagement/mitkDataNode.cpp DataManagement/mitkDataStorage.cpp DataManagement/mitkEnumerationProperty.cpp DataManagement/mitkFloatPropertyExtension.cpp DataManagement/mitkGeometry3D.cpp DataManagement/mitkGeometryData.cpp DataManagement/mitkGeometryTransformHolder.cpp DataManagement/mitkGroupTagProperty.cpp DataManagement/mitkGenericIDRelationRule.cpp DataManagement/mitkIdentifiable.cpp DataManagement/mitkImageAccessorBase.cpp DataManagement/mitkImageCaster.cpp DataManagement/mitkImageCastPart1.cpp DataManagement/mitkImageCastPart2.cpp DataManagement/mitkImageCastPart3.cpp DataManagement/mitkImageCastPart4.cpp DataManagement/mitkImage.cpp DataManagement/mitkImageDataItem.cpp DataManagement/mitkImageDescriptor.cpp DataManagement/mitkImageReadAccessor.cpp DataManagement/mitkImageStatisticsHolder.cpp DataManagement/mitkImageVtkAccessor.cpp DataManagement/mitkImageVtkReadAccessor.cpp DataManagement/mitkImageVtkWriteAccessor.cpp DataManagement/mitkImageWriteAccessor.cpp DataManagement/mitkIntPropertyExtension.cpp DataManagement/mitkIPersistenceService.cpp DataManagement/mitkIPropertyAliases.cpp DataManagement/mitkIPropertyDescriptions.cpp DataManagement/mitkIPropertyExtensions.cpp DataManagement/mitkIPropertyFilters.cpp DataManagement/mitkIPropertyOwner.cpp DataManagement/mitkIPropertyPersistence.cpp DataManagement/mitkIPropertyProvider.cpp DataManagement/mitkLandmarkProjectorBasedCurvedGeometry.cpp DataManagement/mitkLandmarkProjector.cpp DataManagement/mitkLevelWindow.cpp DataManagement/mitkLevelWindowManager.cpp DataManagement/mitkLevelWindowPreset.cpp DataManagement/mitkLevelWindowProperty.cpp DataManagement/mitkLine.cpp DataManagement/mitkLookupTable.cpp DataManagement/mitkLookupTableProperty.cpp DataManagement/mitkLookupTables.cpp # specializations of GenericLookupTable DataManagement/mitkMaterial.cpp DataManagement/mitkMemoryUtilities.cpp DataManagement/mitkModalityProperty.cpp DataManagement/mitkModifiedLock.cpp DataManagement/mitkNodePredicateAnd.cpp DataManagement/mitkNodePredicateBase.cpp DataManagement/mitkNodePredicateCompositeBase.cpp DataManagement/mitkNodePredicateData.cpp DataManagement/mitkNodePredicateDataType.cpp DataManagement/mitkNodePredicateDataUID.cpp DataManagement/mitkNodePredicateDimension.cpp DataManagement/mitkNodePredicateFirstLevel.cpp DataManagement/mitkNodePredicateFunction.cpp DataManagement/mitkNodePredicateGeometry.cpp DataManagement/mitkNodePredicateNot.cpp DataManagement/mitkNodePredicateOr.cpp DataManagement/mitkNodePredicateProperty.cpp DataManagement/mitkNodePredicateDataProperty.cpp DataManagement/mitkNodePredicateSource.cpp DataManagement/mitkNodePredicateSubGeometry.cpp DataManagement/mitkNumericConstants.cpp DataManagement/mitkPlaneGeometry.cpp DataManagement/mitkPlaneGeometryData.cpp DataManagement/mitkPlaneOperation.cpp DataManagement/mitkPlaneOrientationProperty.cpp DataManagement/mitkPointOperation.cpp DataManagement/mitkPointSet.cpp DataManagement/mitkPointSetShapeProperty.cpp DataManagement/mitkProperties.cpp DataManagement/mitkPropertyAliases.cpp DataManagement/mitkPropertyDescriptions.cpp DataManagement/mitkPropertyExtension.cpp DataManagement/mitkPropertyExtensions.cpp DataManagement/mitkPropertyFilter.cpp DataManagement/mitkPropertyFilters.cpp DataManagement/mitkPropertyKeyPath.cpp DataManagement/mitkPropertyList.cpp DataManagement/mitkPropertyListReplacedObserver.cpp DataManagement/mitkPropertyNameHelper.cpp DataManagement/mitkPropertyObserver.cpp DataManagement/mitkPropertyPersistence.cpp DataManagement/mitkPropertyPersistenceInfo.cpp DataManagement/mitkPropertyRelationRuleBase.cpp DataManagement/mitkProportionalTimeGeometry.cpp DataManagement/mitkRenderingModeProperty.cpp DataManagement/mitkResliceMethodProperty.cpp DataManagement/mitkRestorePlanePositionOperation.cpp DataManagement/mitkRotationOperation.cpp DataManagement/mitkScaleOperation.cpp DataManagement/mitkSlicedData.cpp DataManagement/mitkSlicedGeometry3D.cpp DataManagement/mitkSmartPointerProperty.cpp DataManagement/mitkStandaloneDataStorage.cpp DataManagement/mitkStringProperty.cpp DataManagement/mitkSurface.cpp DataManagement/mitkSurfaceOperation.cpp DataManagement/mitkSourceImageRelationRule.cpp DataManagement/mitkThinPlateSplineCurvedGeometry.cpp DataManagement/mitkTimeGeometry.cpp DataManagement/mitkTransferFunction.cpp DataManagement/mitkTransferFunctionInitializer.cpp DataManagement/mitkTransferFunctionProperty.cpp DataManagement/mitkTemporoSpatialStringProperty.cpp DataManagement/mitkUIDManipulator.cpp DataManagement/mitkVector.cpp DataManagement/mitkVectorProperty.cpp DataManagement/mitkVtkInterpolationProperty.cpp DataManagement/mitkVtkRepresentationProperty.cpp DataManagement/mitkVtkResliceInterpolationProperty.cpp DataManagement/mitkVtkScalarModeProperty.cpp DataManagement/mitkWeakPointerProperty.cpp DataManagement/mitkIPropertyRelations.cpp DataManagement/mitkPropertyRelations.cpp Interactions/mitkAction.cpp Interactions/mitkBindDispatcherInteractor.cpp Interactions/mitkCrosshairPositionEvent.cpp Interactions/mitkDataInteractor.cpp Interactions/mitkDispatcher.cpp Interactions/mitkDisplayActionEventBroadcast.cpp Interactions/mitkDisplayActionEventFunctions.cpp Interactions/mitkDisplayActionEventHandler.cpp Interactions/mitkDisplayActionEventHandlerDesynchronized.cpp Interactions/mitkDisplayActionEventHandlerStd.cpp Interactions/mitkDisplayActionEventHandlerSynchronized.cpp Interactions/mitkDisplayCoordinateOperation.cpp Interactions/mitkEventConfig.cpp Interactions/mitkEventFactory.cpp Interactions/mitkEventRecorder.cpp Interactions/mitkEventStateMachine.cpp Interactions/mitkInteractionEventConst.cpp Interactions/mitkInteractionEvent.cpp Interactions/mitkInteractionEventHandler.cpp Interactions/mitkInteractionEventObserver.cpp Interactions/mitkInteractionKeyEvent.cpp Interactions/mitkInteractionPositionEvent.cpp Interactions/mitkInteractionSchemeSwitcher.cpp Interactions/mitkInternalEvent.cpp Interactions/mitkMouseDoubleClickEvent.cpp Interactions/mitkMouseMoveEvent.cpp Interactions/mitkMousePressEvent.cpp Interactions/mitkMouseReleaseEvent.cpp Interactions/mitkMouseWheelEvent.cpp Interactions/mitkPointSetDataInteractor.cpp Interactions/mitkSinglePointDataInteractor.cpp Interactions/mitkStateMachineAction.cpp Interactions/mitkStateMachineCondition.cpp Interactions/mitkStateMachineContainer.cpp Interactions/mitkStateMachineState.cpp Interactions/mitkStateMachineTransition.cpp Interactions/mitkVtkEventAdapter.cpp Interactions/mitkVtkInteractorStyle.cxx Interactions/mitkXML2EventParser.cpp IO/mitkAbstractFileIO.cpp IO/mitkAbstractFileReader.cpp IO/mitkAbstractFileWriter.cpp IO/mitkCustomMimeType.cpp IO/mitkFileReader.cpp IO/mitkFileReaderRegistry.cpp IO/mitkFileReaderSelector.cpp IO/mitkFileReaderWriterBase.cpp IO/mitkFileWriter.cpp IO/mitkFileWriterRegistry.cpp IO/mitkFileWriterSelector.cpp IO/mitkGeometry3DToXML.cpp IO/mitkIFileIO.cpp IO/mitkIFileReader.cpp IO/mitkIFileWriter.cpp IO/mitkGeometryDataReaderService.cpp IO/mitkGeometryDataWriterService.cpp IO/mitkImageGenerator.cpp IO/mitkImageVtkLegacyIO.cpp IO/mitkImageVtkXmlIO.cpp IO/mitkIMimeTypeProvider.cpp IO/mitkIOConstants.cpp IO/mitkIOMimeTypes.cpp IO/mitkIOUtil.cpp IO/mitkItkImageIO.cpp IO/mitkItkLoggingAdapter.cpp IO/mitkLegacyFileReaderService.cpp IO/mitkLegacyFileWriterService.cpp IO/mitkLocaleSwitch.cpp IO/mitkLog.cpp IO/mitkMimeType.cpp IO/mitkMimeTypeProvider.cpp IO/mitkOperation.cpp IO/mitkPixelType.cpp IO/mitkPointSetReaderService.cpp IO/mitkPointSetWriterService.cpp IO/mitkProportionalTimeGeometryToXML.cpp IO/mitkRawImageFileReader.cpp IO/mitkStandardFileLocations.cpp IO/mitkSurfaceStlIO.cpp IO/mitkSurfaceVtkIO.cpp IO/mitkSurfaceVtkLegacyIO.cpp IO/mitkSurfaceVtkXmlIO.cpp IO/mitkUtf8Util.cpp IO/mitkVtkLoggingAdapter.cpp IO/mitkPreferenceListReaderOptionsFunctor.cpp IO/mitkIOMetaInformationPropertyConstants.cpp Rendering/mitkAbstractAnnotationRenderer.cpp Rendering/mitkAnnotationUtils.cpp Rendering/mitkBaseRenderer.cpp #Rendering/mitkGLMapper.cpp Moved to deprecated LegacyGL Module Rendering/mitkGradientBackground.cpp Rendering/mitkImageVtkMapper2D.cpp Rendering/mitkMapper.cpp Rendering/mitkAnnotation.cpp Rendering/mitkPlaneGeometryDataMapper2D.cpp Rendering/mitkPlaneGeometryDataVtkMapper3D.cpp Rendering/mitkPointSetVtkMapper2D.cpp Rendering/mitkPointSetVtkMapper3D.cpp Rendering/mitkRenderWindowBase.cpp Rendering/mitkRenderWindow.cpp Rendering/mitkRenderWindowFrame.cpp #Rendering/mitkSurfaceGLMapper2D.cpp Moved to deprecated LegacyGL Module Rendering/mitkSurfaceVtkMapper2D.cpp Rendering/mitkSurfaceVtkMapper3D.cpp Rendering/mitkVtkEventProvider.cpp Rendering/mitkVtkMapper.cpp Rendering/mitkVtkPropRenderer.cpp Rendering/mitkVtkWidgetRendering.cpp Rendering/vtkMitkLevelWindowFilter.cpp Rendering/vtkMitkRectangleProp.cpp Rendering/vtkMitkRenderProp.cpp Rendering/vtkMitkThickSlicesFilter.cpp Rendering/vtkNeverTranslucentTexture.cpp ) set(RESOURCE_FILES Interactions/globalConfig.xml Interactions/DisplayInteraction.xml Interactions/DisplayConfigMITKBase.xml Interactions/DisplayConfigPACSBase.xml Interactions/DisplayConfigCrosshair.xml Interactions/DisplayConfigRotation.xml Interactions/DisplayConfigActivateCoupling.xml Interactions/DisplayConfigSwivel.xml Interactions/DisplayConfigPACSPan.xml Interactions/DisplayConfigPACSScroll.xml Interactions/DisplayConfigPACSZoom.xml Interactions/DisplayConfigPACSLevelWindow.xml Interactions/DisplayConfigBlockLMB.xml Interactions/PointSet.xml Interactions/PointSetConfig.xml mitkLevelWindowPresets.xml mitkAnatomicalStructureColorPresets.xml ) diff --git a/Modules/Core/include/mitkBaseRenderer.h b/Modules/Core/include/mitkBaseRenderer.h index d91f6a2b13..7ed6b171f7 100644 --- a/Modules/Core/include/mitkBaseRenderer.h +++ b/Modules/Core/include/mitkBaseRenderer.h @@ -1,467 +1,467 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef MITKBASERENDERER_H #define MITKBASERENDERER_H -#include "mitkDataStorage.h" -#include "mitkPlaneGeometry.h" -#include "mitkPlaneGeometryData.h" -#include "mitkTimeGeometry.h" +#include +#include +#include +#include -#include "mitkCameraController.h" -#include "mitkCameraRotationController.h" -#include "mitkSliceNavigationController.h" +#include +#include +#include -#include "mitkBindDispatcherInteractor.h" -#include "mitkDispatcher.h" +#include +#include #include #include #include #include namespace mitk { class Mapper; class BaseLocalStorageHandler; #pragma GCC visibility push(default) itkEventMacroDeclaration(RendererResetEvent, itk::AnyEvent); #pragma GCC visibility pop /* * \brief Organizes the rendering process * * A BaseRenderer contains a reference to a given vtkRenderWindow * and a corresponding vtkRenderer. * The BaseRenderer defines which mapper should be used (2D / 3D) * and which view direction should be rendered. * * All existing BaseRenderer are stored in a static variable * that can be accessed / modified via the static functions. * VtkPropRenderer is a concrete implementation of a BaseRenderer. */ class MITKCORE_EXPORT BaseRenderer : public itk::Object { public: typedef std::map BaseRendererMapType; static BaseRendererMapType baseRendererMap; static BaseRenderer* GetInstance(vtkRenderWindow* renderWindow); static void AddInstance(vtkRenderWindow* renderWindow, BaseRenderer* baseRenderer); static void RemoveInstance(vtkRenderWindow* renderWindow); static BaseRenderer* GetByName(const std::string& name); static vtkRenderWindow* GetRenderWindowByName(const std::string& name); mitkClassMacroItkParent(BaseRenderer, itk::Object); BaseRenderer(const char* name = nullptr, vtkRenderWindow* renderWindow = nullptr); /** * \brief Defines which kind of mapper (e.g. 2D or 3D) should be used. */ enum StandardMapperSlot { Standard2D = 1, Standard3D = 2 }; /** * \brief Defines which view direction should be rendered. */ enum class ViewDirection { AXIAL = 0, SAGITTAL, CORONAL, THREE_D }; void RemoveAllLocalStorages(); void RegisterLocalStorageHandler(BaseLocalStorageHandler* lsh); void UnregisterLocalStorageHandler(BaseLocalStorageHandler* lsh); virtual void SetDataStorage(DataStorage* storage); virtual DataStorage::Pointer GetDataStorage() const { return m_DataStorage.GetPointer(); } vtkRenderWindow* GetRenderWindow() const { return m_RenderWindow; } vtkRenderer* GetVtkRenderer() const { return m_VtkRenderer; } /** * \brief Get the dispatcher, which handles events for this base renderer. */ Dispatcher::Pointer GetDispatcher() const; /** * \brief Set a new size for the render window. */ virtual void Resize(int w, int h); /** * \brief Initialize the base renderer with a vtk render window. * Set the new renderer for the camera controller. */ virtual void InitRenderer(vtkRenderWindow* renderwindow); /** * \brief Set the initial size for the render window. */ virtual void InitSize(int w, int h); virtual void DrawOverlayMouse(Point2D&) { MITK_INFO << "BaseRenderer::DrawOverlayMouse() should be in concret implementation OpenGLRenderer." << std::endl; } /** * \brief Set the world time geometry using the given TimeGeometry. * * Setting a new world time geometry updates the current world geometry and the * curent world plane geometry, using the currently selected slice and timestep. */ virtual void SetWorldTimeGeometry(const mitk::TimeGeometry* geometry); itkGetConstObjectMacro(WorldTimeGeometry, TimeGeometry); /** * \brief Get the current time-extracted 3D-geometry. */ itkGetConstObjectMacro(CurrentWorldGeometry, BaseGeometry); /** * \brief Get the current slice-extracted 2D-geometry. */ itkGetConstObjectMacro(CurrentWorldPlaneGeometry, PlaneGeometry); virtual bool SetWorldGeometryToDataStorageBounds() { return false; } /** * \brief Set the slice that should be used for geometry extraction. * * The slice defines the current slice-extracted 2D-geometry (CurrentWorldPlaneGeometry). * Setting a new slice will update the current world geometry and the * curent world plane geometry. */ virtual void SetSlice(unsigned int slice); itkGetConstMacro(Slice, unsigned int); /** * \brief Set the timestep that should be used for geometry extraction. * * The timestep defines the current time-extracted 3D-geometry (CurrentWorldGeometry). * Setting a new timestep will update the current world geometry and the * curent world plane geometry. */ virtual void SetTimeStep(unsigned int timeStep); itkGetConstMacro(TimeStep, unsigned int); /** * \brief Get the timestep of a BaseData object which * exists at the time of the currently displayed content. * * Returns -1 if there is no data at the current time. */ TimeStepType GetTimeStep(const BaseData* data) const; /** * \brief Get the time in ms of the currently display content (geometry). */ ScalarType GetTime() const; /** * \brief Set the world time geometry using the geometry of the given event. * * The function is triggered by a SliceNavigationController::GeometrySendEvent. */ virtual void SetGeometry(const itk::EventObject& geometrySliceEvent); /** * \brief Set the current world plane geometry using the existing current world geometry. * * The function is triggered by a SliceNavigationController::GeometryUpdateEvent. */ virtual void UpdateGeometry(const itk::EventObject& geometrySliceEvent); /** * \brief Set the current slice using "SetSlice" and update the current world geometry * and the current world plane geometry. * * The function is triggered by a SliceNavigationController::GeometrySliceEvent. */ virtual void SetGeometrySlice(const itk::EventObject& geometrySliceEvent); /** * \brief Set the current time using "SetTimeStep" and update the current world geometry * and the current world plane geometry. * * The function is triggered by a TimeNavigationController::TimeEvent. */ virtual void SetGeometryTime(const itk::EventObject& geometryTimeEvent); itkGetObjectMacro(CurrentWorldPlaneGeometryNode, DataNode); /** * \brief Modify the update time of the current world plane geometry and force reslicing. */ void SendUpdateSlice(); /** * \brief Get timestamp of the update time of the current world plane geometry. */ itkGetMacro(CurrentWorldPlaneGeometryUpdateTime, unsigned long); /** * \brief Get timestamp of the update time of the current timestep. */ itkGetMacro(TimeStepUpdateTime, unsigned long); /** * \brief Pick a world coordinate (x,y,z) given a display coordinate (x,y). * * \warning Not implemented; has to be overwritten in subclasses. */ virtual void PickWorldPoint(const Point2D& diplayPosition, Point3D& worldPosition) const = 0; /** * \brief Determines the object (mitk::DataNode) closest to the current * position by means of picking. * * \warning Implementation currently empty for 2D rendering; intended to be * implemented for 3D renderers. */ virtual DataNode* PickObject(const Point2D& /*displayPosition*/, Point3D& /*worldPosition*/) const { return nullptr; } /** * \brief Get the currently used mapperID. */ itkGetMacro(MapperID, MapperSlotId); itkGetConstMacro(MapperID, MapperSlotId); /** * \brief Set the used mapperID. */ virtual void SetMapperID(MapperSlotId id); virtual int* GetSize() const; virtual int* GetViewportSize() const; void SetSliceNavigationController(SliceNavigationController* SlicenavigationController); itkGetObjectMacro(CameraController, CameraController); itkGetObjectMacro(SliceNavigationController, SliceNavigationController); itkGetObjectMacro(CameraRotationController, CameraRotationController); itkGetMacro(EmptyWorldGeometry, bool); /** * \brief Getter/Setter for defining if the displayed region should be shifted * or rescaled if the render window is resized. */ itkGetMacro(KeepDisplayedRegion, bool); itkSetMacro(KeepDisplayedRegion, bool); /** * \brief Return the name of the base renderer */ const char* GetName() const { return m_Name.c_str(); } /** * \brief Return the size in x-direction of the base renderer. */ int GetSizeX() const { return this->GetSize()[0]; } /** * \brief Return the size in y-direction of the base renderer. */ int GetSizeY() const { return this->GetSize()[1]; } /** * \brief Return the bounds of the bounding box of the * current world geometry (time-extracted 3D-geometry). * * If the geometry is empty, the bounds are set to zero. */ const double* GetBounds() const; void RequestUpdate(); void ForceImmediateUpdate(); /** * \brief Return the number of mappers which are visible and have * level-of-detail rendering enabled. */ unsigned int GetNumberOfVisibleLODEnabledMappers() const; /** * \brief Convert a display point to the 3D world index * using the geometry of the renderWindow. */ void DisplayToWorld(const Point2D& displayPoint, Point3D& worldIndex) const; /** * \brief Convert a display point to the 2D world index, mapped onto the display plane * using the geometry of the renderWindow. */ void DisplayToPlane(const Point2D& displayPoint, Point2D& planePointInMM) const; /** * \brief Convert a 3D world index to the display point * using the geometry of the renderWindow. */ void WorldToDisplay(const Point3D& worldIndex, Point2D& displayPoint) const; /** * \brief Convert a 3D world index to the point on the viewport * using the geometry of the renderWindow. */ void WorldToView(const Point3D& worldIndex, Point2D& viewPoint) const; /** * \brief Convert a 2D plane coordinate to the display point * using the geometry of the renderWindow. */ void PlaneToDisplay(const Point2D& planePointInMM, Point2D& displayPoint) const; /** * \brief Convert a 2D plane coordinate to the point on the viewport * using the geometry of the renderWindow. */ void PlaneToView(const Point2D& planePointInMM, Point2D& viewPoint) const; double GetScaleFactorMMPerDisplayUnit() const; Point2D GetDisplaySizeInMM() const; Point2D GetViewportSizeInMM() const; Point2D GetOriginInMM() const; itkGetConstMacro(ConstrainZoomingAndPanning, bool) virtual void SetConstrainZoomingAndPanning(bool constrain); protected: ~BaseRenderer() override; virtual void Update() = 0; vtkRenderWindow* m_RenderWindow; vtkRenderer* m_VtkRenderer; MapperSlotId m_MapperID; DataStorage::Pointer m_DataStorage; unsigned long m_LastUpdateTime; CameraController::Pointer m_CameraController; - SliceNavigationController::Pointer m_SliceNavigationController; CameraRotationController::Pointer m_CameraRotationController; + SliceNavigationController::Pointer m_SliceNavigationController; void UpdateCurrentGeometries(); virtual void SetCurrentWorldPlaneGeometry(const PlaneGeometry* geometry2d); virtual void SetCurrentWorldGeometry(const BaseGeometry *geometry); private: /** * \brief Pointer to the current TimeGeometry. * * This WorldTimeGeometry is used to extract a SlicedGeometry3D, * using the current timestep (set via SetTimeStep). * The time-extracted 3D-geometry is used as the "CurrentWorldgeometry". * It will be set using the "SetCurrentWorldGeometry"-function. * A PlaneGeometry can further be extracted using the current slice (set via SetSlice). * The slice-extracted 2D-geometry is used as the "CurrentWorldPlaneGeometry". * It will be set using the "SetCurrentWorldPlaneGeometry"-function. */ TimeGeometry::ConstPointer m_WorldTimeGeometry; /** * \brief Pointer to the current time-extracted 3D-geometry. * * This CurrentWorldGeometry is used to define the bounds for this * BaseRenderer. * It will be set using the "SetCurrentWorldGeometry"-function. */ BaseGeometry::ConstPointer m_CurrentWorldGeometry; /** * \brief Pointer to the current slice-extracted 2D-geometry. * * This CurrentWorldPlaneGeometry is used to define the maximal * area (2D manifold) to be rendered in case we are doing 2D-rendering. * It will be set using the "SetCurrentWorldPlaneGeometry"-function. */ PlaneGeometry::Pointer m_CurrentWorldPlaneGeometry; unsigned int m_Slice; unsigned int m_TimeStep; itk::TimeStamp m_CurrentWorldPlaneGeometryUpdateTime; itk::TimeStamp m_TimeStepUpdateTime; BindDispatcherInteractor* m_BindDispatcherInteractor; bool m_KeepDisplayedRegion; protected: void PrintSelf(std::ostream& os, itk::Indent indent) const override; PlaneGeometryData::Pointer m_CurrentWorldPlaneGeometryData; DataNode::Pointer m_CurrentWorldPlaneGeometryNode; unsigned long m_CurrentWorldPlaneGeometryTransformTime; std::string m_Name; double m_Bounds[6]; bool m_EmptyWorldGeometry; typedef std::set LODEnabledMappersType; unsigned int m_NumberOfVisibleLODEnabledMappers; std::list m_RegisteredLocalStorageHandlers; bool m_ConstrainZoomingAndPanning; }; } // namespace mitk #endif // MITKBASERENDERER_H diff --git a/Modules/Core/include/mitkCrosshairManager.h b/Modules/Core/include/mitkCrosshairManager.h new file mode 100644 index 0000000000..6f074fe677 --- /dev/null +++ b/Modules/Core/include/mitkCrosshairManager.h @@ -0,0 +1,102 @@ +/*============================================================================ + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center (DKFZ) +All rights reserved. + +Use of this source code is governed by a 3-clause BSD license that can be +found in the LICENSE file. + +============================================================================*/ + +#ifndef MITKCROSSHAIRMANAGER_H +#define MITKCROSSHAIRMANAGER_H + +#include + +#include +#include +#include +#include + +#include +#include + +namespace mitk +{ + /** + * \brief The CrosshairManager takes care of the correct settings for the plane geometries + * that form the crosshair. + * + * The CrosshairManager keeps track of a TimeGeometry, which is used to compute + * the three different plane geometries (axial, coronal, sagittal). + * These three plane geometries can be added to / removed from the data storage + * using this CrosshairManager. Adding / removing them to / from the data storage + * will change the rendering behavior for the crosshair - only data nodes + * inside the data storage will be rendered. + * + * + */ + class MITKCORE_EXPORT CrosshairManager : public itk::Object + { + public: + + mitkClassMacroItkParent(CrosshairManager, itk::Object); + mitkNewMacro2Param(Self, DataStorage*, BaseRenderer*); + + itkSetObjectMacro(DataStorage, DataStorage); + itkSetObjectMacro(BaseRenderer, BaseRenderer); + + /** + * \brief Set the input time geometry out of which the oriented geometries will be created. + */ + void ComputeOrientedTimeGeometries(const TimeGeometry* geometry); + + void SetCrosshairPosition(const Point3D& selectedPoint); + Point3D GetCrosshairPosition() const; + + void SetCrosshairVisibility(bool visible); + bool GetCrosshairVisibility() const; + void SetCrosshairGap(unsigned int gapSize); + + void AddPlanesToDataStorage(); + void RemovePlanesFromDataStorage(); + + protected: + + CrosshairManager(DataStorage* dataStorage, BaseRenderer* baseRenderer); + ~CrosshairManager(); + + void InitializePlaneProperties(DataNode::Pointer planeNode, const std::string& planeName); + void InitializePlaneData(DataNode::Pointer planeNode, const TimeGeometry* timeGeometry, unsigned int& slice); + void SetCrosshairPosition(const Point3D& selectedPoint, + DataNode::Pointer planeNode, + const TimeGeometry* timeGeometry, + unsigned int& slice); + void AddPlaneToDataStorage(DataNode::Pointer planeNode, DataNode::Pointer parent); + + DataStorage* m_DataStorage; + BaseRenderer* m_BaseRenderer; + + TimeGeometry::ConstPointer m_InputTimeGeometry; + TimeGeometry::Pointer m_AxialTimeGeometry; + TimeGeometry::Pointer m_CoronalTimeGeometry; + TimeGeometry::Pointer m_SagittalTimeGeometry; + + unsigned int m_AxialSlice; + unsigned int m_CoronalSlice; + unsigned int m_SagittalSlice; + + /** + * @brief The 3 helper objects which contain the plane geometry. + */ + DataNode::Pointer m_AxialPlaneNode; + DataNode::Pointer m_CoronalPlaneNode; + DataNode::Pointer m_SagittalPlaneNode; + DataNode::Pointer m_ParentNodeForGeometryPlanes; + + }; +} // namespace mitk + +#endif // MITKCROSSHAIRMANAGER_H diff --git a/Modules/Core/include/mitkSliceNavigationController.h b/Modules/Core/include/mitkSliceNavigationController.h index c45673095e..abf67f6dba 100644 --- a/Modules/Core/include/mitkSliceNavigationController.h +++ b/Modules/Core/include/mitkSliceNavigationController.h @@ -1,439 +1,439 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef MITKSLICENAVIGATIONCONTROLLER_H #define MITKSLICENAVIGATIONCONTROLLER_H #include #include #include #include #include #include #pragma GCC visibility push(default) #include #pragma GCC visibility pop #include namespace mitk { #define mitkTimeGeometryEventMacro(classname, super) \ class MITKCORE_EXPORT classname : public super \ { \ public: \ typedef classname Self; \ typedef super Superclass; \ classname(TimeGeometry *aTimeGeometry, unsigned int aPos) : Superclass(aTimeGeometry, aPos) {} \ virtual ~classname() {} \ virtual const char *GetEventName() const { return #classname; } \ virtual bool CheckEvent(const ::itk::EventObject *e) const { return dynamic_cast(e); } \ virtual ::itk::EventObject *MakeObject() const { return new Self(GetTimeGeometry(), GetPos()); } \ private: \ void operator=(const Self &); \ } class PlaneGeometry; class BaseGeometry; class BaseRenderer; /** * \brief Controls the selection of the slice the associated BaseRenderer * will display * * A SliceNavigationController takes a BaseGeometry or a TimeGeometry as input world geometry * (TODO what are the exact requirements?) and generates a TimeGeometry * as output. The TimeGeometry holds a number of SlicedGeometry3Ds and * these in turn hold a series of PlaneGeometries. One of these PlaneGeometries is * selected as world geometry for the BaseRenderers associated to 2D views. * * The SliceNavigationController holds has Steppers (one for the slice, a * second for the time step), which control the selection of a single * PlaneGeometry from the TimeGeometry. SliceNavigationController generates * ITK events to tell observers, like a BaseRenderer, when the selected slice * or timestep changes. * * Example: * \code * // Initialization * sliceCtrl = mitk::SliceNavigationController::New(); * * // Tell the navigator the geometry to be sliced (with geometry a * // BaseGeometry::ConstPointer) * sliceCtrl->SetInputWorldTimeGeometry(geometry.GetPointer()); * * // Tell the navigator in which direction it shall slice the data * sliceCtrl->SetViewDirection(mitk::SliceNavigationController::Axial); * * // Connect one or more BaseRenderer to this navigator, i.e.: events sent * // by the navigator when stepping through the slices (e.g. by * // sliceCtrl->GetSlice()->Next()) will be received by the BaseRenderer * // (in this example only slice-changes, see also ConnectGeometryTimeEvent * // and ConnectGeometryEvents.) * sliceCtrl->ConnectGeometrySliceEvent(renderer.GetPointer()); * * //create a world geometry and send the information to the connected renderer(s) * sliceCtrl->Update(); * \endcode * * * You can connect visible navigators to a SliceNavigationController, e.g., a * QmitkSliderNavigator (for Qt): * * \code * // Create the visible navigator (a slider with a spin-box) * QmitkSliderNavigator* navigator = * new QmitkSliderNavigator(parent, "slidernavigator"); * * // Connect the navigator to the slice-stepper of the * // SliceNavigationController. For initialization (position, minimal and * // maximal values) the values of the SliceNavigationController are used. * // Thus, accessing methods of a navigator is normally not necessary, since * // everything can be set via the (Qt-independent) SliceNavigationController. * // The QmitkStepperAdapter converts the Qt-signals to Qt-independent * // itk-events. * new QmitkStepperAdapter(navigator, sliceCtrl->GetSlice(), "navigatoradaptor"); * \endcode * * If you do not want that all renderwindows are updated when a new slice is * selected, you can use a specific RenderingManager, which updates only those * renderwindows that should be updated. This is sometimes useful when a 3D view * does not need to be updated when the slices in some 2D views are changed. * QmitkSliderNavigator (for Qt): * * \code * // create a specific RenderingManager * mitk::RenderingManager::Pointer myManager = mitk::RenderingManager::New(); * * // tell the RenderingManager to update only renderwindow1 and renderwindow2 * myManager->AddRenderWindow(renderwindow1); * myManager->AddRenderWindow(renderwindow2); * * // tell the SliceNavigationController of renderwindow1 and renderwindow2 * // to use the specific RenderingManager instead of the global one * renderwindow1->GetSliceNavigationController()->SetRenderingManager(myManager); * renderwindow2->GetSliceNavigationController()->SetRenderingManager(myManager); * \endcode * * \todo implement for non-evenly-timed geometry! * \ingroup NavigationControl */ class MITKCORE_EXPORT SliceNavigationController : public BaseController { public: mitkClassMacro(SliceNavigationController, BaseController); itkNewMacro(Self); /** * \brief Possible view directions, \a Original will use * the PlaneGeometry instances in a SlicedGeometry3D provided * as input world geometry (by SetInputWorldTimeGeometry). */ enum ViewDirection { Axial, Sagittal, Coronal, Original }; /** * \brief Set the input world time geometry out of which the * geometries for slicing will be created. * * Any previous previous set input geometry (3D or Time) will * be ignored in future. */ void SetInputWorldTimeGeometry(const TimeGeometry* geometry); itkGetConstObjectMacro(InputWorldTimeGeometry, TimeGeometry); /** * \brief Access the created geometry */ itkGetConstObjectMacro(CreatedWorldGeometry, TimeGeometry); itkGetObjectMacro(CreatedWorldGeometry, TimeGeometry); /** * \brief Set the desired view directions * * \sa ViewDirection * \sa Update(ViewDirection viewDirection, bool top = true, * bool frontside = true, bool rotated = false) */ itkSetEnumMacro(ViewDirection, ViewDirection); itkGetEnumMacro(ViewDirection, ViewDirection); /** * \brief Set the default view direction * * This is used to re-initialize the view direction of the SNC to the * default value with SetViewDirectionToDefault() * * \sa ViewDirection * \sa Update(ViewDirection viewDirection, bool top = true, * bool frontside = true, bool rotated = false) */ itkSetEnumMacro(DefaultViewDirection, ViewDirection); itkGetEnumMacro(DefaultViewDirection, ViewDirection); const char *GetViewDirectionAsString() const; virtual void SetViewDirectionToDefault(); /** * \brief Do the actual creation and send it to the connected * observers (renderers) * */ virtual void Update(); /** * \brief Extended version of Update, additionally allowing to * specify the direction/orientation of the created geometry. * */ virtual void Update(ViewDirection viewDirection, bool top = true, bool frontside = true, bool rotated = false); /** * \brief Send the created geometry to the connected * observers (renderers) * * Called by Update(). */ virtual void SendCreatedWorldGeometry(); /** * \brief Tell observers to re-read the currently selected 2D geometry * */ virtual void SendCreatedWorldGeometryUpdate(); /** * \brief Send the currently selected slice to the connected * observers (renderers) * * Called by Update(). */ virtual void SendSlice(); /** * \brief Send the currently selected time to the connected * observers (renderers) * * Called by Update(). */ virtual void SendTime(); class MITKCORE_EXPORT TimeGeometryEvent : public itk::AnyEvent { public: typedef TimeGeometryEvent Self; typedef itk::AnyEvent Superclass; TimeGeometryEvent(TimeGeometry* aTimeGeometry, unsigned int aPos) : m_TimeGeometry(aTimeGeometry), m_Pos(aPos) {} ~TimeGeometryEvent() override {} const char* GetEventName() const override { return "TimeGeometryEvent"; } bool CheckEvent(const ::itk::EventObject* e) const override { return dynamic_cast(e); } ::itk::EventObject* MakeObject() const override { return new Self(m_TimeGeometry, m_Pos); } TimeGeometry* GetTimeGeometry() const { return m_TimeGeometry; } unsigned int GetPos() const { return m_Pos; } private: TimeGeometry::Pointer m_TimeGeometry; unsigned int m_Pos; // TimeGeometryEvent(const Self&); void operator=(const Self&); // just hide }; mitkTimeGeometryEventMacro(GeometrySendEvent, TimeGeometryEvent); mitkTimeGeometryEventMacro(GeometryUpdateEvent, TimeGeometryEvent); mitkTimeGeometryEventMacro(GeometryTimeEvent, TimeGeometryEvent); mitkTimeGeometryEventMacro(GeometrySliceEvent, TimeGeometryEvent); template void ConnectGeometrySendEvent(T* receiver) { auto eventReceptorCommand = itk::ReceptorMemberCommand::New(); eventReceptorCommand->SetCallbackFunction(receiver, &T::SetGeometry); unsigned long tag = AddObserver(GeometrySendEvent(nullptr, 0), eventReceptorCommand); m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); } template void ConnectGeometryUpdateEvent(T* receiver) { auto eventReceptorCommand = itk::ReceptorMemberCommand::New(); eventReceptorCommand->SetCallbackFunction(receiver, &T::UpdateGeometry); unsigned long tag = AddObserver(GeometryUpdateEvent(nullptr, 0), eventReceptorCommand); m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); } template void ConnectGeometrySliceEvent(T* receiver) { auto eventReceptorCommand = itk::ReceptorMemberCommand::New(); eventReceptorCommand->SetCallbackFunction(receiver, &T::SetGeometrySlice); unsigned long tag = AddObserver(GeometrySliceEvent(nullptr, 0), eventReceptorCommand); m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); } template void ConnectGeometryTimeEvent(T* receiver) { auto eventReceptorCommand = itk::ReceptorMemberCommand::New(); eventReceptorCommand->SetCallbackFunction(receiver, &T::SetGeometryTime); unsigned long tag = AddObserver(GeometryTimeEvent(nullptr, 0), eventReceptorCommand); m_ReceiverToObserverTagsMap[static_cast(receiver)].push_back(tag); } template void ConnectGeometryEvents(T* receiver) { // connect sendEvent only once ConnectGeometrySliceEvent(receiver, false); ConnectGeometryTimeEvent(receiver); } // use a templated method to get the right offset when casting to void* template void Disconnect(T* receiver) { auto i = m_ReceiverToObserverTagsMap.find(static_cast(receiver)); if (i == m_ReceiverToObserverTagsMap.end()) return; const std::list& tags = i->second; for (auto tagIter = tags.begin(); tagIter != tags.end(); ++tagIter) { RemoveObserver(*tagIter); } m_ReceiverToObserverTagsMap.erase(i); } - Message1 SetCrosshairEvent; + Message1 SetCrosshairEvent; /** * \brief To connect multiple SliceNavigationController, we can * act as an observer ourselves: implemented interface * \warning not implemented */ virtual void SetGeometry(const itk::EventObject& geometrySliceEvent); /** * \brief To connect multiple SliceNavigationController, we can * act as an observer ourselves: implemented interface */ virtual void SetGeometrySlice(const itk::EventObject& geometrySliceEvent); /** * \brief To connect multiple SliceNavigationController, we can * act as an observer ourselves: implemented interface */ virtual void SetGeometryTime(const itk::EventObject& geometryTimeEvent); /** \brief Positions the SNC according to the specified point */ void SelectSliceByPoint(const Point3D& point); /** \brief Returns the BaseGeometry of the currently selected time step. */ const BaseGeometry* GetCurrentGeometry3D(); /** \brief Returns the currently selected Plane in the current * BaseGeometry (if existent). */ const PlaneGeometry* GetCurrentPlaneGeometry(); /** \brief Sets / gets the BaseRenderer associated with this SNC (if any). * While the BaseRenderer is not directly used by SNC, this is a convenience * method to enable BaseRenderer access via the SNC. */ itkSetObjectMacro(Renderer, BaseRenderer); itkGetMacro(Renderer, BaseRenderer*); /** \brief Re-orients the slice stack. All slices will be oriented to the given normal vector. The given point (world coordinates) defines the selected slice. Careful: The resulting axis vectors are not clearly defined this way. If you want to define them clearly, use ReorientSlices (const Point3D &point, const Vector3D &axisVec0, const Vector3D &axisVec1). */ void ReorientSlices(const Point3D& point, const Vector3D& normal); /** \brief Re-orients the slice stack so that all planes are oriented according to the * given axis vectors. The given Point eventually defines selected slice. */ void ReorientSlices(const Point3D& point, const Vector3D& axisVec0, const Vector3D& axisVec1); void ExecuteOperation(Operation* operation) override; /** * \brief Feature option to lock planes during mouse interaction. * This option flag disables the mouse event which causes the center * cross to move near by. */ itkSetMacro(SliceLocked, bool); itkGetMacro(SliceLocked, bool); itkBooleanMacro(SliceLocked); /** * \brief Feature option to lock slice rotation. * * This option flag disables separately the rotation of a slice which is * implemented in mitkSliceRotator. */ itkSetMacro(SliceRotationLocked, bool); itkGetMacro(SliceRotationLocked, bool); itkBooleanMacro(SliceRotationLocked); /** * \brief Adjusts the numerical range of the slice stepper according to * the current geometry orientation of this SNC's SlicedGeometry. */ void AdjustSliceStepperRange(); /** \brief Convenience method that returns the time step currently selected by the controller.*/ TimeStepType GetSelectedTimeStep() const; /** \brief Convenience method that returns the time point that corresponds to the selected * time step. The conversion is done using the time geometry of the SliceNavigationController. * If the time geometry is not yet set, this function will always return 0.0.*/ TimePointType GetSelectedTimePoint() const; protected: SliceNavigationController(); ~SliceNavigationController() override; void CreateWorldGeometry(bool top, bool frontside, bool rotated); TimeGeometry::ConstPointer m_InputWorldTimeGeometry; TimeGeometry::Pointer m_CreatedWorldGeometry; ViewDirection m_ViewDirection; ViewDirection m_DefaultViewDirection; RenderingManager::Pointer m_RenderingManager; BaseRenderer* m_Renderer; bool m_BlockUpdate; bool m_SliceLocked; bool m_SliceRotationLocked; typedef std::map> ObserverTagsMapType; ObserverTagsMapType m_ReceiverToObserverTagsMap; }; } // namespace mitk #endif // MITKSLICENAVIGATIONCONTROLLER_H diff --git a/Modules/Core/include/mitkSliceNavigationHelper.h b/Modules/Core/include/mitkSliceNavigationHelper.h new file mode 100644 index 0000000000..2176f4585a --- /dev/null +++ b/Modules/Core/include/mitkSliceNavigationHelper.h @@ -0,0 +1,99 @@ +/*============================================================================ + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center (DKFZ) +All rights reserved. + +Use of this source code is governed by a 3-clause BSD license that can be +found in the LICENSE file. + +============================================================================*/ + +#ifndef MITKSLICENAVIGATIONHELPER_H +#define MITKSLICENAVIGATIONHELPER_H + +#include + +#include +#include + +namespace mitk +{ + namespace SliceNavigationHelper + { + + /** + * \brief Select a specific slice from the given time geometry given a 3D point. + * + * The function uses the currently selected time point to retrieve the current base geometry from + * the given time geometry. + * If this base geometry is a SlicedGeometry3D, the best fitting slice is computed by projecting + * the point onto the plane geometry of this SlicedGeometry. + * The slice with the shortest distance to the point is returned as the selected slice. + * + * \param timeGeometry The TimeGeometry of which the slice should be selected. + * \param point The Point3D which is used to select the specific slice. + * + * \pre The given TimeGeometry must cover the currently selected time point. If not, an exception is thrown. + * If the given TimeGeomety is a nullptr, -1 is returned. + * + * \return The selected slice as unsigned int. If the computed slice is negative, "0" (zero) is + * returned as the selected slice. + */ + MITKCORE_EXPORT unsigned int SelectSliceByPoint(const TimeGeometry* timeGeometry, const Point3D& point); + + /** + * \brief Create a new time geometry, which is oriented with the given plane orientation. + * + * The function uses the currently selected time point to retrieve the current base geometry from + * the given time geometry. + * A new SlicedGeometry3D is created and initialized with the given parameters and the extracted base geometry. + * This new SlicedGeometry3D is then used to replace the geometries of each time step of a cloned version + * of the given TimeGeometry. This allows to only replace the contained geometries for each time step, + * keeping the time steps (time point + time duration) from the original time geometry. + * + * \param timeGeometry The TimeGeometry which should be used for cloning. + * \param planeOrientation The PlaneOrientation that specifies the new orientation of the time geometry. + * \param top If true, create the plane at top, otherwise at bottom. + * \param frontside Defines the side of the plane. + * \param rotated Rotates the plane by 180 degree around its normal. + * s.a. PlaneGeometry::InitializeStandardPlane + * + * \pre The given TimeGeometry must cover the currently selected time point. If not, an exception is thrown. + * If the given TimeGeomety is a nullptr, a nullptr is returned immediately. + * + * \return The created geometry as TimeGeometry. + */ + MITKCORE_EXPORT TimeGeometry::Pointer CreateOrientedTimeGeometry(const TimeGeometry* timeGeometry, + PlaneGeometry::PlaneOrientation planeOrientation, + bool top, + bool frontside, + bool rotated); + + /** + * \brief Extracts the plane geometry for the given time step and slice position. + * + * The function uses the given time point to retrieve the current base geometry from + * the given time geometry. + * If this base geometry is a SlicedGeometry3D, the plane geometry of the given + * slice position is extracted and returned. + * If not, a nullptr is returned. + * + * \param timeGeometry The TimeGeometry of which the plane geometry should be extracted + * \param timePoint The time point to extract the current base geometry. + * \param slicePosition The slice position to extract the current plane geometry. + * + * \pre The given TimeGeometry must cover the currently selected time point. If not, an exception is thrown. + * If the given TimeGeomety is a nullptr, a nullptr is returned immediately. + * + * \return The extracted plane geometry as PlaneGeometry. + * Nullptr, if no SlicedGeometry3D was found for the given time step. + */ + MITKCORE_EXPORT PlaneGeometry* GetCurrentPlaneGeometry(const TimeGeometry* timeGeometry, + TimePointType timePoint, + unsigned int slicePosition); + } // namespace SliceNavigationHelper +} // namespace mitk + +#endif // MITKSLICENAVIGATIONHELPER_H diff --git a/Modules/Core/src/Controllers/mitkCrosshairManager.cpp b/Modules/Core/src/Controllers/mitkCrosshairManager.cpp new file mode 100644 index 0000000000..a9ef72d7b3 --- /dev/null +++ b/Modules/Core/src/Controllers/mitkCrosshairManager.cpp @@ -0,0 +1,351 @@ +/*============================================================================ + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center (DKFZ) +All rights reserved. + +Use of this source code is governed by a 3-clause BSD license that can be +found in the LICENSE file. + +============================================================================*/ + +#include "mitkCrosshairManager.h" + +#include +#include +#include +#include +#include +#include + +mitk::CrosshairManager::CrosshairManager(DataStorage* dataStorage, BaseRenderer* baseRenderer) + : m_DataStorage(dataStorage) + , m_BaseRenderer(baseRenderer) + , m_InputTimeGeometry() + , m_AxialTimeGeometry() + , m_CoronalTimeGeometry() + , m_SagittalTimeGeometry() +{ + m_AxialPlaneNode = mitk::DataNode::New(); + m_CoronalPlaneNode = mitk::DataNode::New(); + m_SagittalPlaneNode = mitk::DataNode::New(); + + std::string rendererName = std::string(m_BaseRenderer->GetName()); + this->InitializePlaneProperties(m_AxialPlaneNode, std::string(rendererName + "axial.plane")); + this->InitializePlaneProperties(m_CoronalPlaneNode, std::string(rendererName + "coronal.plane")); + this->InitializePlaneProperties(m_SagittalPlaneNode, std::string(rendererName + "sagittal.plane")); + + m_ParentNodeForGeometryPlanes = mitk::DataNode::New(); + m_ParentNodeForGeometryPlanes->SetProperty("name", mitk::StringProperty::New(rendererName)); + m_ParentNodeForGeometryPlanes->SetProperty("helper object", mitk::BoolProperty::New(true)); +} + +mitk::CrosshairManager::~CrosshairManager() +{ + this->RemovePlanesFromDataStorage(); +} + +void mitk::CrosshairManager::ComputeOrientedTimeGeometries(const TimeGeometry* geometry) +{ + if (nullptr != geometry) + { + if (geometry->GetBoundingBoxInWorld()->GetDiagonalLength2() < eps) + { + itkWarningMacro("setting an empty bounding-box"); + geometry = nullptr; + } + } + + if (m_InputTimeGeometry == geometry) + { + return; + } + + m_InputTimeGeometry = geometry; + + if (m_InputTimeGeometry.IsNull()) + { + return; + } + + if (0 == m_InputTimeGeometry->CountTimeSteps()) + { + return; + } + + try + { + m_AxialTimeGeometry = SliceNavigationHelper::CreateOrientedTimeGeometry( + m_InputTimeGeometry, PlaneGeometry::Axial, false, false, true); + m_CoronalTimeGeometry = SliceNavigationHelper::CreateOrientedTimeGeometry( + m_InputTimeGeometry, PlaneGeometry::Coronal, false, true, false); + m_SagittalTimeGeometry = SliceNavigationHelper::CreateOrientedTimeGeometry( + m_InputTimeGeometry, PlaneGeometry::Sagittal, true, true, false); + } + catch (const mitk::Exception& e) + { + MITK_ERROR << "Unable to create oriented time geometries\n" + << "Reason: " << e.GetDescription(); + } + + this->InitializePlaneData(m_AxialPlaneNode, m_AxialTimeGeometry, m_AxialSlice); + this->InitializePlaneData(m_CoronalPlaneNode, m_CoronalTimeGeometry, m_CoronalSlice); + this->InitializePlaneData(m_SagittalPlaneNode, m_SagittalTimeGeometry, m_SagittalSlice); + + RenderingManager::GetInstance()->RequestUpdate(m_BaseRenderer->GetRenderWindow()); +} + +void mitk::CrosshairManager::SetCrosshairPosition(const Point3D& selectedPoint) +{ + if (m_AxialPlaneNode.IsNull() || m_CoronalPlaneNode.IsNull() || m_SagittalPlaneNode.IsNull()) + { + return; + } + + if (m_AxialTimeGeometry.IsNull() || m_CoronalTimeGeometry.IsNull() || m_SagittalTimeGeometry.IsNull()) + { + return; + } + + this->SetCrosshairPosition(selectedPoint, m_AxialPlaneNode, m_AxialTimeGeometry, m_AxialSlice); + this->SetCrosshairPosition(selectedPoint, m_CoronalPlaneNode, m_CoronalTimeGeometry, m_CoronalSlice); + this->SetCrosshairPosition(selectedPoint, m_SagittalPlaneNode, m_SagittalTimeGeometry, m_SagittalSlice); +} + +mitk::Point3D mitk::CrosshairManager::GetCrosshairPosition() const +{ + if (m_InputTimeGeometry.IsNull()) + { + // return null-point since we don't show the crosshair anyway + return Point3D(0.0); + } + + Point3D point = m_InputTimeGeometry->GetCenterInWorld(); + + PlaneGeometry* axialPlaneGeometry = nullptr; + PlaneGeometry* coronalPlaneGeometry = nullptr; + PlaneGeometry* sagittalPlaneGeometry = nullptr; + + // get the currently selected time point + auto selectedTimePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); + try + { + axialPlaneGeometry = + SliceNavigationHelper::GetCurrentPlaneGeometry(m_AxialTimeGeometry, selectedTimePoint, m_AxialSlice); + coronalPlaneGeometry = + SliceNavigationHelper::GetCurrentPlaneGeometry(m_CoronalTimeGeometry, selectedTimePoint, m_CoronalSlice); + sagittalPlaneGeometry = + SliceNavigationHelper::GetCurrentPlaneGeometry(m_SagittalTimeGeometry, selectedTimePoint, m_SagittalSlice); + } + catch (const mitk::Exception& e) + { + MITK_ERROR << "Unable to get plane geometries. Using default center point.\n" + << "Reason: " << e.GetDescription(); + } + + Line3D line; + if (nullptr != axialPlaneGeometry && nullptr != coronalPlaneGeometry && + axialPlaneGeometry->IntersectionLine(coronalPlaneGeometry, line)) + { + if (nullptr != sagittalPlaneGeometry && sagittalPlaneGeometry->IntersectionPoint(line, point)) + { + return point; + } + } + + // return input geometry center point if no intersection point was found + return point; +} + +void mitk::CrosshairManager::SetCrosshairVisibility(bool visible) +{ + if (m_AxialPlaneNode.IsNull() || m_CoronalPlaneNode.IsNull() || m_SagittalPlaneNode.IsNull()) + { + return; + } + + m_AxialPlaneNode->SetVisibility(visible, m_BaseRenderer); + m_CoronalPlaneNode->SetVisibility(visible, m_BaseRenderer); + m_SagittalPlaneNode->SetVisibility(visible, m_BaseRenderer); +} + +bool mitk::CrosshairManager::GetCrosshairVisibility() const +{ + if (m_AxialPlaneNode.IsNull() || m_CoronalPlaneNode.IsNull() || m_SagittalPlaneNode.IsNull()) + { + return false; + } + + bool axialVisibility = false; + if (m_AxialPlaneNode->GetVisibility(axialVisibility, m_BaseRenderer)) + { + bool coronalVisibility = false; + if (m_CoronalPlaneNode->GetVisibility(coronalVisibility, m_BaseRenderer)) + { + bool sagittalVisibility = false; + if (m_SagittalPlaneNode->GetVisibility(sagittalVisibility, m_BaseRenderer)) + { + if (axialVisibility == coronalVisibility && coronalVisibility == sagittalVisibility) + { + return axialVisibility; + } + } + } + } + + mitkThrow() << "Invalid state of plane visibility."; +} + +void mitk::CrosshairManager::SetCrosshairGap(unsigned int gapSize) +{ + m_AxialPlaneNode->SetIntProperty("Crosshair.Gap Size", gapSize); + m_CoronalPlaneNode->SetIntProperty("Crosshair.Gap Size", gapSize); + m_SagittalPlaneNode->SetIntProperty("Crosshair.Gap Size", gapSize); +} + +void mitk::CrosshairManager::AddPlanesToDataStorage() +{ + if (nullptr == m_DataStorage) + { + return; + } + + if (m_AxialPlaneNode.IsNull() || m_CoronalPlaneNode.IsNull() + || m_SagittalPlaneNode.IsNull() || m_ParentNodeForGeometryPlanes.IsNull()) + { + return; + } + + this->AddPlaneToDataStorage(m_ParentNodeForGeometryPlanes, nullptr); + this->AddPlaneToDataStorage(m_AxialPlaneNode, m_ParentNodeForGeometryPlanes); + this->AddPlaneToDataStorage(m_CoronalPlaneNode, m_ParentNodeForGeometryPlanes); + this->AddPlaneToDataStorage(m_SagittalPlaneNode, m_ParentNodeForGeometryPlanes); +} + +void mitk::CrosshairManager::RemovePlanesFromDataStorage() +{ + if (nullptr == m_DataStorage) + { + return; + } + + if (m_AxialPlaneNode.IsNotNull() && m_CoronalPlaneNode.IsNotNull() + && m_SagittalPlaneNode.IsNotNull() && m_ParentNodeForGeometryPlanes.IsNotNull()) + { + m_DataStorage->Remove(m_AxialPlaneNode); + m_DataStorage->Remove(m_CoronalPlaneNode); + m_DataStorage->Remove(m_SagittalPlaneNode); + m_DataStorage->Remove(m_ParentNodeForGeometryPlanes); + } +} + +void mitk::CrosshairManager::InitializePlaneProperties(DataNode::Pointer planeNode, const std::string& planeName) +{ + planeNode->GetPropertyList()->SetProperty("layer", mitk::IntProperty::New(1000)); + planeNode->SetProperty("reslice.thickslices", mitk::ResliceMethodProperty::New()); + planeNode->SetProperty("reslice.thickslices.num", mitk::IntProperty::New(5)); + planeNode->SetProperty("Crosshair.Gap Size", mitk::IntProperty::New(32)); + + // set the crosshair only visible for this specific renderer + planeNode->SetVisibility(false); + planeNode->SetVisibility(true, m_BaseRenderer); + planeNode->SetProperty("name", mitk::StringProperty::New(planeName)); + planeNode->SetProperty("helper object", mitk::BoolProperty::New(true)); +} + +void mitk::CrosshairManager::InitializePlaneData(DataNode::Pointer planeNode, const TimeGeometry* timeGeometry, unsigned int& slice) +{ + if (planeNode.IsNull()) + { + return; + } + + if (nullptr == timeGeometry) + { + return; + } + + // get the BaseGeometry of the selected time point + auto selectedTimePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); + auto currentGeometry = timeGeometry->GetGeometryForTimePoint(selectedTimePoint); + if (nullptr == currentGeometry) + { + // time point not valid for the time geometry + mitkThrow() << "Cannot extract a base geometry. A time point is selected that is not covered by" + << "the given time geometry. Selected time point: " << selectedTimePoint; + } + + const auto* slicedGeometry = dynamic_cast(currentGeometry.GetPointer()); + if (nullptr == slicedGeometry) + { + return; + } + + slice = slicedGeometry->GetSlices() / 2; // center slice + PlaneGeometryData::Pointer planeData = PlaneGeometryData::New(); + planeData->SetPlaneGeometry(slicedGeometry->GetPlaneGeometry(slice)); + planeNode->SetData(planeData); +} + +void mitk::CrosshairManager::SetCrosshairPosition(const Point3D& selectedPoint, + DataNode::Pointer planeNode, + const TimeGeometry* timeGeometry, + unsigned int& slice) +{ + PlaneGeometryData::Pointer planeData = PlaneGeometryData::New(); + + int selectedSlice = -1; + try + { + selectedSlice = SliceNavigationHelper::SelectSliceByPoint(timeGeometry, selectedPoint); + } + catch (const mitk::Exception& e) + { + MITK_ERROR << "Unable to select a slice by the given point " << selectedPoint << "\n" + << "Reason: " << e.GetDescription(); + } + + if (-1 == selectedSlice) + { + return; + } + + slice = selectedSlice; + mitk::PlaneGeometry* planeGeometry = nullptr; + // get the currently selected time point + auto selectedTimePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); + try + { + planeGeometry = SliceNavigationHelper::GetCurrentPlaneGeometry(timeGeometry, selectedTimePoint, slice); + } + catch (const mitk::Exception& e) + { + MITK_ERROR << "Unable to get plane geometries\n" + << "Reason: " << e.GetDescription(); + } + + if (nullptr == planeGeometry) + { + return; + } + + planeData->SetPlaneGeometry(planeGeometry); + planeNode->SetData(planeData); +} + +void mitk::CrosshairManager::AddPlaneToDataStorage(DataNode::Pointer planeNode, DataNode::Pointer parent) +{ + if (!m_DataStorage->Exists(planeNode) + && (nullptr == parent || m_DataStorage->Exists(parent))) + { + try + { + m_DataStorage->Add(planeNode, parent); + } + catch (std::invalid_argument& /*e*/) + { + return; + } + } +} diff --git a/Modules/Core/src/Controllers/mitkSliceNavigationController.cpp b/Modules/Core/src/Controllers/mitkSliceNavigationController.cpp index d99c58a6e6..6201016e0c 100644 --- a/Modules/Core/src/Controllers/mitkSliceNavigationController.cpp +++ b/Modules/Core/src/Controllers/mitkSliceNavigationController.cpp @@ -1,599 +1,562 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkSliceNavigationController.h" +#include #include "mitkBaseRenderer.h" #include "mitkCrosshairPositionEvent.h" #include "mitkOperation.h" #include "mitkOperationActor.h" #include "mitkPlaneGeometry.h" #include "mitkProportionalTimeGeometry.h" #include "mitkArbitraryTimeGeometry.h" #include "mitkSlicedGeometry3D.h" #include "mitkVtkPropRenderer.h" #include "mitkImage.h" #include "mitkImagePixelReadAccessor.h" #include "mitkInteractionConst.h" #include "mitkNodePredicateDataType.h" #include "mitkOperationEvent.h" #include "mitkPixelTypeMultiplex.h" #include "mitkPlaneOperation.h" #include "mitkPointOperation.h" #include "mitkStatusBar.h" #include "mitkApplyTransformMatrixOperation.h" namespace mitk { PlaneGeometry::PlaneOrientation ViewDirectionToPlaneOrientation(SliceNavigationController::ViewDirection viewDiretion) { switch (viewDiretion) { case SliceNavigationController::Axial: return PlaneGeometry::Axial; case SliceNavigationController::Sagittal: return PlaneGeometry::Sagittal; case SliceNavigationController::Coronal: return PlaneGeometry::Coronal; case SliceNavigationController::Original: default: return PlaneGeometry::None; } } SliceNavigationController::SliceNavigationController() : BaseController() , m_InputWorldTimeGeometry(TimeGeometry::ConstPointer()) , m_CreatedWorldGeometry(TimeGeometry::Pointer()) , m_ViewDirection(Axial) , m_DefaultViewDirection(Axial) , m_RenderingManager(RenderingManager::Pointer()) , m_Renderer(nullptr) , m_BlockUpdate(false) , m_SliceLocked(false) , m_SliceRotationLocked(false) { typedef itk::SimpleMemberCommand SNCCommandType; SNCCommandType::Pointer sliceStepperChangedCommand, timeStepperChangedCommand; sliceStepperChangedCommand = SNCCommandType::New(); timeStepperChangedCommand = SNCCommandType::New(); sliceStepperChangedCommand->SetCallbackFunction(this, &SliceNavigationController::SendSlice); timeStepperChangedCommand->SetCallbackFunction(this, &SliceNavigationController::SendTime); m_Slice->AddObserver(itk::ModifiedEvent(), sliceStepperChangedCommand); m_Time->AddObserver(itk::ModifiedEvent(), timeStepperChangedCommand); m_Slice->SetUnitName("mm"); m_Time->SetUnitName("ms"); } SliceNavigationController::~SliceNavigationController() { // nothing here } void SliceNavigationController::SetInputWorldTimeGeometry(const TimeGeometry* geometry) { if (nullptr != geometry) { if (geometry->GetBoundingBoxInWorld()->GetDiagonalLength2() < eps) { itkWarningMacro("setting an empty bounding-box"); geometry = nullptr; } } if (m_InputWorldTimeGeometry != geometry) { m_InputWorldTimeGeometry = geometry; this->Modified(); } } void SliceNavigationController::SetViewDirectionToDefault() { m_ViewDirection = m_DefaultViewDirection; } const char* SliceNavigationController::GetViewDirectionAsString() const { const char* viewDirectionString; switch (m_ViewDirection) { case SliceNavigationController::Axial: viewDirectionString = "Axial"; break; case SliceNavigationController::Sagittal: viewDirectionString = "Sagittal"; break; case SliceNavigationController::Coronal: viewDirectionString = "Coronal"; break; case SliceNavigationController::Original: viewDirectionString = "Original"; break; default: viewDirectionString = "No View Direction Available"; break; } return viewDirectionString; } void SliceNavigationController::Update() { if (!m_BlockUpdate) { if (m_ViewDirection == Sagittal) { this->Update(Sagittal, true, true, false); } else if (m_ViewDirection == Coronal) { this->Update(Coronal, false, true, false); } else if (m_ViewDirection == Axial) { this->Update(Axial, false, false, true); } else { this->Update(m_ViewDirection); } } } void SliceNavigationController::Update(SliceNavigationController::ViewDirection viewDirection, bool top, bool frontside, bool rotated) { if (m_BlockUpdate) { return; } if (m_InputWorldTimeGeometry.IsNull()) { return; } if (0 == m_InputWorldTimeGeometry->CountTimeSteps()) { return; } m_BlockUpdate = true; if (m_LastUpdateTime < m_InputWorldTimeGeometry->GetMTime()) { Modified(); } this->SetViewDirection(viewDirection); if (m_LastUpdateTime < GetMTime()) { m_LastUpdateTime = GetMTime(); this->CreateWorldGeometry(top, frontside, rotated); } // unblock update; we may do this now, because if m_BlockUpdate was already // true before this method was entered, then we will never come here. m_BlockUpdate = false; // Send the geometry. Do this even if nothing was changed, because maybe // Update() was only called to re-send the old geometry and time/slice data. this->SendCreatedWorldGeometry(); this->SendSlice(); this->SendTime(); // Adjust the stepper range of slice stepper according to geometry this->AdjustSliceStepperRange(); } void SliceNavigationController::SendCreatedWorldGeometry() { if (!m_BlockUpdate) { this->InvokeEvent(GeometrySendEvent(m_CreatedWorldGeometry, 0)); } } void SliceNavigationController::SendCreatedWorldGeometryUpdate() { if (!m_BlockUpdate) { this->InvokeEvent(GeometryUpdateEvent(m_CreatedWorldGeometry, m_Slice->GetPos())); } } void SliceNavigationController::SendSlice() { if (!m_BlockUpdate) { if (m_CreatedWorldGeometry.IsNotNull()) { this->InvokeEvent(GeometrySliceEvent(m_CreatedWorldGeometry, m_Slice->GetPos())); RenderingManager::GetInstance()->RequestUpdateAll(); } } } void SliceNavigationController::SendTime() { if (!m_BlockUpdate) { if (m_CreatedWorldGeometry.IsNotNull()) { this->InvokeEvent(GeometryTimeEvent(m_CreatedWorldGeometry, m_Time->GetPos())); RenderingManager::GetInstance()->RequestUpdateAll(); } } } void SliceNavigationController::SetGeometry(const itk::EventObject&) { // not implemented } void SliceNavigationController::SetGeometryTime(const itk::EventObject& geometryTimeEvent) { if (m_CreatedWorldGeometry.IsNull()) { return; } const auto* timeEvent = dynamic_cast(&geometryTimeEvent); assert(timeEvent != nullptr); TimeGeometry* timeGeometry = timeEvent->GetTimeGeometry(); assert(timeGeometry != nullptr); auto timeStep = (int)timeEvent->GetPos(); ScalarType timeInMS; timeInMS = timeGeometry->TimeStepToTimePoint(timeStep); timeStep = m_CreatedWorldGeometry->TimePointToTimeStep(timeInMS); this->GetTime()->SetPos(timeStep); } void SliceNavigationController::SetGeometrySlice(const itk::EventObject& geometrySliceEvent) { const auto* sliceEvent = dynamic_cast(&geometrySliceEvent); assert(sliceEvent != nullptr); this->GetSlice()->SetPos(sliceEvent->GetPos()); } void SliceNavigationController::SelectSliceByPoint(const Point3D& point) { if (m_CreatedWorldGeometry.IsNull()) { return; } - //@todo add time to PositionEvent and use here!! - const auto* slicedWorldGeometry = dynamic_cast( - m_CreatedWorldGeometry->GetGeometryForTimeStep(this->GetTime()->GetPos()).GetPointer()); - - if (nullptr == slicedWorldGeometry) - { - return; - } - - int bestSlice = -1; - double bestDistance = itk::NumericTraits::max(); - - if (slicedWorldGeometry->GetEvenlySpaced()) + int selectedSlice = -1; + try { - PlaneGeometry* plane = slicedWorldGeometry->GetPlaneGeometry(0); - - const Vector3D& direction = slicedWorldGeometry->GetDirectionVector(); - - Point3D projectedPoint; - plane->Project(point, projectedPoint); - - // Check whether the point is somewhere within the slice stack volume; - // otherwise, the default slice (0) will be selected - if (direction[0] * (point[0] - projectedPoint[0]) + direction[1] * (point[1] - projectedPoint[1]) + - direction[2] * (point[2] - projectedPoint[2]) >= 0) - { - bestSlice = static_cast(plane->Distance(point) / slicedWorldGeometry->GetSpacing()[2] + 0.5); - } + selectedSlice = SliceNavigationHelper::SelectSliceByPoint(m_CreatedWorldGeometry, point); } - else + catch (const mitk::Exception& e) { - int numberOfSlices = slicedWorldGeometry->GetSlices(); - Point3D projectedPoint; - for (int slice = 0; slice < numberOfSlices; ++slice) - { - slicedWorldGeometry->GetPlaneGeometry(slice)->Project(point, projectedPoint); - const Vector3D distance = projectedPoint - point; - ScalarType currentDistance = distance.GetSquaredNorm(); - - if (currentDistance < bestDistance) - { - bestDistance = currentDistance; - bestSlice = slice; - } - } + MITK_ERROR << "Unable to select a slice by the given point " << point << "\n" + << "Reason: " << e.GetDescription(); } - if (bestSlice >= 0) + if (-1 == selectedSlice) { - this->GetSlice()->SetPos(bestSlice); - } - else - { - this->GetSlice()->SetPos(0); + return; } + this->GetSlice()->SetPos(selectedSlice); + this->SendCreatedWorldGeometryUpdate(); // send crosshair event SetCrosshairEvent.Send(point); } void SliceNavigationController::ReorientSlices(const Point3D& point, const Vector3D& normal) { if (m_CreatedWorldGeometry.IsNull()) { return; } PlaneOperation op(OpORIENT, point, normal); m_CreatedWorldGeometry->ExecuteOperation(&op); this->SendCreatedWorldGeometryUpdate(); } void SliceNavigationController::ReorientSlices(const Point3D& point, const Vector3D& axisVec0, const Vector3D& axisVec1) { if (m_CreatedWorldGeometry.IsNull()) { return; } PlaneOperation op(OpORIENT, point, axisVec0, axisVec1); m_CreatedWorldGeometry->ExecuteOperation(&op); this->SendCreatedWorldGeometryUpdate(); } const BaseGeometry* SliceNavigationController::GetCurrentGeometry3D() { if (m_CreatedWorldGeometry.IsNull()) { return nullptr; } return m_CreatedWorldGeometry->GetGeometryForTimeStep(this->GetTime()->GetPos()); } const PlaneGeometry* SliceNavigationController::GetCurrentPlaneGeometry() { const auto* slicedGeometry = dynamic_cast(this->GetCurrentGeometry3D()); if (nullptr == slicedGeometry) { return nullptr; } return slicedGeometry->GetPlaneGeometry(this->GetSlice()->GetPos()); } void SliceNavigationController::AdjustSliceStepperRange() { const auto* slicedGeometry = dynamic_cast(this->GetCurrentGeometry3D()); const Vector3D& direction = slicedGeometry->GetDirectionVector(); int c = 0; int i, k = 0; for (i = 0; i < 3; ++i) { if (fabs(direction[i]) < 0.000000001) { ++c; } else { k = i; } } if (c == 2) { ScalarType min = slicedGeometry->GetOrigin()[k]; ScalarType max = min + slicedGeometry->GetExtentInMM(k); m_Slice->SetRange(min, max); } else { m_Slice->InvalidateRange(); } } void SliceNavigationController::ExecuteOperation(Operation* operation) { // switch on type // - select best slice for a given point // - rotate created world geometry according to Operation->SomeInfo() if (!operation || m_CreatedWorldGeometry.IsNull()) { return; } switch (operation->GetOperationType()) { case OpMOVE: // should be a point operation { if (!m_SliceLocked) // do not move the cross position { // select a slice auto* po = dynamic_cast(operation); if (po && po->GetIndex() == -1) { this->SelectSliceByPoint(po->GetPoint()); } else if (po && po->GetIndex() != -1) // undo case because index != -1, index holds the old position of this slice { this->GetSlice()->SetPos(po->GetIndex()); } } break; } case OpRESTOREPLANEPOSITION: { m_CreatedWorldGeometry->ExecuteOperation(operation); this->SendCreatedWorldGeometryUpdate(); break; } case OpAPPLYTRANSFORMMATRIX: { m_CreatedWorldGeometry->ExecuteOperation(operation); this->SendCreatedWorldGeometryUpdate(); break; } default: { // do nothing break; } } } TimeStepType SliceNavigationController::GetSelectedTimeStep() const { return this->GetTime()->GetPos(); } TimePointType SliceNavigationController::GetSelectedTimePoint() const { auto timeStep = this->GetSelectedTimeStep(); if (m_CreatedWorldGeometry.IsNull()) { return 0.0; } if (!m_CreatedWorldGeometry->IsValidTimeStep(timeStep)) { mitkThrow() << "SliceNavigationController is in an invalid state. It has a time step" << "selected that is not covered by its time geometry. Selected time step: " << timeStep << "; TimeGeometry steps count: " << m_CreatedWorldGeometry->CountTimeSteps(); } return m_CreatedWorldGeometry->TimeStepToTimePoint(timeStep); } void SliceNavigationController::CreateWorldGeometry(bool top, bool frontside, bool rotated) { // initialize the viewplane SlicedGeometry3D::Pointer slicedWorldGeometry; BaseGeometry::ConstPointer currentGeometry; // get the BaseGeometry (ArbitraryTimeGeometry or ProportionalTimeGeometry) of the current time step auto currentTimeStep = this->GetTime()->GetPos(); if (m_InputWorldTimeGeometry->IsValidTimeStep(currentTimeStep)) { currentGeometry = m_InputWorldTimeGeometry->GetGeometryForTimeStep(currentTimeStep); } else { currentGeometry = m_InputWorldTimeGeometry->GetGeometryForTimeStep(0); } if (Original == m_ViewDirection) { slicedWorldGeometry = dynamic_cast( m_InputWorldTimeGeometry->GetGeometryForTimeStep(currentTimeStep).GetPointer()); if (slicedWorldGeometry.IsNull()) { slicedWorldGeometry = SlicedGeometry3D::New(); slicedWorldGeometry->InitializePlanes( currentGeometry, PlaneGeometry::None, top, frontside, rotated); slicedWorldGeometry->SetSliceNavigationController(this); } } else { slicedWorldGeometry = SlicedGeometry3D::New(); slicedWorldGeometry->InitializePlanes( currentGeometry, ViewDirectionToPlaneOrientation(m_ViewDirection), top, frontside, rotated); slicedWorldGeometry->SetSliceNavigationController(this); } // reset the stepper m_Slice->SetSteps(slicedWorldGeometry->GetSlices()); m_Slice->SetPos(0); TimeStepType inputTimeSteps = m_InputWorldTimeGeometry->CountTimeSteps(); const TimeBounds& timeBounds = m_InputWorldTimeGeometry->GetTimeBounds(); m_Time->SetSteps(inputTimeSteps); m_Time->SetPos(0); m_Time->SetRange(timeBounds[0], timeBounds[1]); currentTimeStep = this->GetTime()->GetPos(); assert(m_InputWorldTimeGeometry->GetGeometryForTimeStep(currentTimeStep).IsNotNull()); // create new time geometry and initialize it according to the type of the 'm_InputWorldTimeGeometry' // the created world geometry will either have equidistant timesteps (ProportionalTimeGeometry) // or individual time bounds for each timestep (ArbitraryTimeGeometry) m_CreatedWorldGeometry = mitk::TimeGeometry::Pointer(); if (nullptr != dynamic_cast(m_InputWorldTimeGeometry.GetPointer())) { const TimePointType minimumTimePoint = m_InputWorldTimeGeometry->TimeStepToTimePoint(currentTimeStep); const TimePointType stepDuration = m_InputWorldTimeGeometry->TimeStepToTimePoint(currentTimeStep + 1) - minimumTimePoint; auto createdTimeGeometry = ProportionalTimeGeometry::New(); createdTimeGeometry->Initialize(slicedWorldGeometry, inputTimeSteps); createdTimeGeometry->SetFirstTimePoint(minimumTimePoint); createdTimeGeometry->SetStepDuration(stepDuration); m_CreatedWorldGeometry = createdTimeGeometry; } else { auto createdTimeGeometry = mitk::ArbitraryTimeGeometry::New(); createdTimeGeometry->ReserveSpaceForGeometries(inputTimeSteps); const BaseGeometry::Pointer clonedGeometry = slicedWorldGeometry->Clone(); for (TimeStepType i = 0; i < inputTimeSteps; ++i) { const auto bounds = m_InputWorldTimeGeometry->GetTimeBounds(i); createdTimeGeometry->AppendNewTimeStep(clonedGeometry, bounds[0], bounds[1]); } createdTimeGeometry->Update(); m_CreatedWorldGeometry = createdTimeGeometry; } } } // namespace mitk diff --git a/Modules/Core/src/Controllers/mitkSliceNavigationHelper.cpp b/Modules/Core/src/Controllers/mitkSliceNavigationHelper.cpp new file mode 100644 index 0000000000..9aeec5f3e6 --- /dev/null +++ b/Modules/Core/src/Controllers/mitkSliceNavigationHelper.cpp @@ -0,0 +1,141 @@ +/*============================================================================ + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center (DKFZ) +All rights reserved. + +Use of this source code is governed by a 3-clause BSD license that can be +found in the LICENSE file. + +============================================================================*/ + +#include "mitkSliceNavigationHelper.h" + +#include +#include +#include +#include +#include +#include + +unsigned int mitk::SliceNavigationHelper::SelectSliceByPoint(const TimeGeometry* timeGeometry, + const Point3D& point) +{ + int selectedSlice = -1; + if (nullptr == timeGeometry) + { + return selectedSlice; + } + + // get the BaseGeometry of the selected time point + auto selectedTimePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); + auto currentGeometry = timeGeometry->GetGeometryForTimePoint(selectedTimePoint); + if (nullptr == currentGeometry) + { + // time point not valid for the ime geometry + mitkThrow() << "Cannot extract a base geometry. A time point is selected that is not covered by" + << "the given time geometry. Selected time point: " << selectedTimePoint; + } + + const auto* slicedGeometry = dynamic_cast(currentGeometry.GetPointer()); + if (nullptr == slicedGeometry) + { + return selectedSlice; + } + + double bestDistance = itk::NumericTraits::max(); + if (slicedGeometry->GetEvenlySpaced()) + { + PlaneGeometry* plane = slicedGeometry->GetPlaneGeometry(0); + const Vector3D& direction = slicedGeometry->GetDirectionVector(); + + Point3D projectedPoint; + plane->Project(point, projectedPoint); + + // check whether the point is somewhere within the slice stack volume + if (direction[0] * (point[0] - projectedPoint[0]) + direction[1] * (point[1] - projectedPoint[1]) + + direction[2] * (point[2] - projectedPoint[2]) >= 0) + { + selectedSlice = static_cast(plane->Distance(point) / slicedGeometry->GetSpacing()[2] + 0.5); + } + } + else + { + int numberOfSlices = slicedGeometry->GetSlices(); + Point3D projectedPoint; + for (int slice = 0; slice < numberOfSlices; ++slice) + { + slicedGeometry->GetPlaneGeometry(slice)->Project(point, projectedPoint); + const Vector3D distance = projectedPoint - point; + ScalarType currentDistance = distance.GetSquaredNorm(); + + if (currentDistance < bestDistance) + { + bestDistance = currentDistance; + selectedSlice = slice; + } + } + } + + if (selectedSlice < 0) + { + selectedSlice = 0; // do not allow negative slices + } + + return selectedSlice; +} + +mitk::TimeGeometry::Pointer mitk::SliceNavigationHelper::CreateOrientedTimeGeometry(const TimeGeometry* timeGeometry, + PlaneGeometry::PlaneOrientation planeOrientation, bool top, bool frontside, bool rotated) +{ + if (nullptr == timeGeometry) + { + return nullptr; + } + + // initialize the viewplane + SlicedGeometry3D::Pointer slicedGeometry; + BaseGeometry::ConstPointer currentGeometry; + + // get the BaseGeometry of the selected time point + auto selectedTimePoint = RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); + currentGeometry = timeGeometry->GetGeometryForTimePoint(selectedTimePoint); + if(nullptr == currentGeometry) + { + // time point not valid for the time geometry + mitkThrow() << "Cannot extract a base geometry. A time point is selected that is not covered by" + << "the given time geometry. Selected time point: " << selectedTimePoint; + } + + slicedGeometry = SlicedGeometry3D::New(); + slicedGeometry->InitializePlanes(currentGeometry, planeOrientation, top, frontside, rotated); + + // use the existing time geometry but replace all time steps with the newly created + // sliced geometry (base geometry), initialized to the desired plane orientation + auto createdTimeGeometry = timeGeometry->Clone(); + createdTimeGeometry->ReplaceTimeStepGeometries(slicedGeometry); + return createdTimeGeometry; +} + +mitk::PlaneGeometry* mitk::SliceNavigationHelper::GetCurrentPlaneGeometry(const TimeGeometry* timeGeometry, + TimePointType timePoint, + unsigned int slicePosition) +{ + if (nullptr == timeGeometry) + { + return nullptr; + } + + const auto* slicedGeometry = + dynamic_cast(timeGeometry->GetGeometryForTimePoint(timePoint).GetPointer()); + + if (nullptr == slicedGeometry) + { + // time point not valid for the time geometry + mitkThrow() << "Cannot extract a sliced geometry. A time point is selected that is not covered by" + << "the given time geometry. Selected time point: " << timePoint; + } + + return slicedGeometry->GetPlaneGeometry(slicePosition); +} diff --git a/Modules/Core/src/Rendering/mitkBaseRenderer.cpp b/Modules/Core/src/Rendering/mitkBaseRenderer.cpp index 6c75786446..69a07fbffd 100644 --- a/Modules/Core/src/Rendering/mitkBaseRenderer.cpp +++ b/Modules/Core/src/Rendering/mitkBaseRenderer.cpp @@ -1,724 +1,732 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkBaseRenderer.h" #include "mitkMapper.h" #include "mitkResliceMethodProperty.h" // Geometries #include "mitkSlicedGeometry3D.h" #include "mitkVtkLayerController.h" #include "mitkInteractionConst.h" #include "mitkProperties.h" #include "mitkWeakPointerProperty.h" // VTK #include #include #include #include #include namespace mitk { itkEventMacroDefinition(RendererResetEvent, itk::AnyEvent); } mitk::BaseRenderer::BaseRendererMapType mitk::BaseRenderer::baseRendererMap; mitk::BaseRenderer *mitk::BaseRenderer::GetInstance(vtkRenderWindow *renWin) { for (auto mapit = baseRendererMap.begin(); mapit != baseRendererMap.end(); ++mapit) { if ((*mapit).first == renWin) return (*mapit).second; } return nullptr; } void mitk::BaseRenderer::AddInstance(vtkRenderWindow *renWin, BaseRenderer *baseRenderer) { if (renWin == nullptr || baseRenderer == nullptr) return; // ensure that no BaseRenderer is managed twice mitk::BaseRenderer::RemoveInstance(renWin); baseRendererMap.insert(BaseRendererMapType::value_type(renWin, baseRenderer)); } void mitk::BaseRenderer::RemoveInstance(vtkRenderWindow *renWin) { auto mapit = baseRendererMap.find(renWin); if (mapit != baseRendererMap.end()) baseRendererMap.erase(mapit); } mitk::BaseRenderer *mitk::BaseRenderer::GetByName(const std::string &name) { for (auto mapit = baseRendererMap.begin(); mapit != baseRendererMap.end(); ++mapit) { if ((*mapit).second->m_Name == name) return (*mapit).second; } return nullptr; } vtkRenderWindow *mitk::BaseRenderer::GetRenderWindowByName(const std::string &name) { for (auto mapit = baseRendererMap.begin(); mapit != baseRendererMap.end(); ++mapit) { if ((*mapit).second->m_Name == name) return (*mapit).first; } return nullptr; } mitk::BaseRenderer::BaseRenderer(const char *name, vtkRenderWindow *renWin) : m_RenderWindow(nullptr), m_VtkRenderer(nullptr), m_MapperID(StandardMapperSlot::Standard2D), m_DataStorage(nullptr), m_LastUpdateTime(0), m_CameraController(nullptr), - m_SliceNavigationController(nullptr), m_CameraRotationController(nullptr), + m_SliceNavigationController(nullptr), m_WorldTimeGeometry(nullptr), m_CurrentWorldGeometry(nullptr), m_CurrentWorldPlaneGeometry(nullptr), m_Slice(0), m_TimeStep(), m_CurrentWorldPlaneGeometryUpdateTime(), m_TimeStepUpdateTime(), m_KeepDisplayedRegion(true), m_CurrentWorldPlaneGeometryData(nullptr), m_CurrentWorldPlaneGeometryNode(nullptr), m_CurrentWorldPlaneGeometryTransformTime(0), m_Name(name), m_EmptyWorldGeometry(true), m_NumberOfVisibleLODEnabledMappers(0) { m_Bounds[0] = 0; m_Bounds[1] = 0; m_Bounds[2] = 0; m_Bounds[3] = 0; m_Bounds[4] = 0; m_Bounds[5] = 0; if (name != nullptr) { m_Name = name; } else { m_Name = "unnamed renderer"; itkWarningMacro(<< "Created unnamed renderer. Bad for serialization. Please choose a name."); } if (renWin != nullptr) { m_RenderWindow = renWin; m_RenderWindow->Register(nullptr); } else { itkWarningMacro(<< "Created mitkBaseRenderer without vtkRenderWindow present."); } // instances.insert( this ); // adding this BaseRenderer to the List of all BaseRenderer m_BindDispatcherInteractor = new mitk::BindDispatcherInteractor(GetName()); WeakPointerProperty::Pointer rendererProp = WeakPointerProperty::New((itk::Object *)this); m_CurrentWorldPlaneGeometry = mitk::PlaneGeometry::New(); m_CurrentWorldPlaneGeometryData = mitk::PlaneGeometryData::New(); m_CurrentWorldPlaneGeometryData->SetPlaneGeometry(m_CurrentWorldPlaneGeometry); m_CurrentWorldPlaneGeometryNode = mitk::DataNode::New(); m_CurrentWorldPlaneGeometryNode->SetData(m_CurrentWorldPlaneGeometryData); m_CurrentWorldPlaneGeometryNode->GetPropertyList()->SetProperty("renderer", rendererProp); m_CurrentWorldPlaneGeometryNode->GetPropertyList()->SetProperty("layer", IntProperty::New(1000)); m_CurrentWorldPlaneGeometryNode->SetProperty("reslice.thickslices", mitk::ResliceMethodProperty::New()); m_CurrentWorldPlaneGeometryNode->SetProperty("reslice.thickslices.num", mitk::IntProperty::New(1)); m_CurrentWorldPlaneGeometryTransformTime = m_CurrentWorldPlaneGeometryNode->GetVtkTransform()->GetMTime(); - mitk::SliceNavigationController::Pointer sliceNavigationController = mitk::SliceNavigationController::New(); - sliceNavigationController->SetRenderer(this); - sliceNavigationController->ConnectGeometrySendEvent(this); - sliceNavigationController->ConnectGeometryUpdateEvent(this); - sliceNavigationController->ConnectGeometrySliceEvent(this); - sliceNavigationController->ConnectGeometryTimeEvent(this); - m_SliceNavigationController = sliceNavigationController; + m_SliceNavigationController = mitk::SliceNavigationController::New(); + m_SliceNavigationController->SetRenderer(this); + m_SliceNavigationController->ConnectGeometrySendEvent(this); + m_SliceNavigationController->ConnectGeometryUpdateEvent(this); + m_SliceNavigationController->ConnectGeometrySliceEvent(this); + m_SliceNavigationController->ConnectGeometryTimeEvent(this); m_CameraRotationController = mitk::CameraRotationController::New(); m_CameraRotationController->SetRenderWindow(m_RenderWindow); m_CameraRotationController->AcquireCamera(); m_CameraController = mitk::CameraController::New(); m_CameraController->SetRenderer(this); m_VtkRenderer = vtkRenderer::New(); m_VtkRenderer->SetMaximumNumberOfPeels(16); if (AntiAliasing::FastApproximate == RenderingManager::GetInstance()->GetAntiAliasing()) m_VtkRenderer->UseFXAAOn(); if (nullptr == mitk::VtkLayerController::GetInstance(m_RenderWindow)) mitk::VtkLayerController::AddInstance(m_RenderWindow, m_VtkRenderer); mitk::VtkLayerController::GetInstance(m_RenderWindow)->InsertSceneRenderer(m_VtkRenderer); } mitk::BaseRenderer::~BaseRenderer() { if (m_VtkRenderer != nullptr) { m_VtkRenderer->Delete(); m_VtkRenderer = nullptr; } if (m_CameraController.IsNotNull()) m_CameraController->SetRenderer(nullptr); mitk::VtkLayerController::RemoveInstance(m_RenderWindow); RemoveAllLocalStorages(); m_DataStorage = nullptr; if (m_BindDispatcherInteractor != nullptr) { delete m_BindDispatcherInteractor; } if (m_RenderWindow != nullptr) { m_RenderWindow->Delete(); m_RenderWindow = nullptr; } } void mitk::BaseRenderer::RemoveAllLocalStorages() { this->InvokeEvent(RendererResetEvent()); std::list::iterator it; for (it = m_RegisteredLocalStorageHandlers.begin(); it != m_RegisteredLocalStorageHandlers.end(); ++it) (*it)->ClearLocalStorage(this, false); m_RegisteredLocalStorageHandlers.clear(); } void mitk::BaseRenderer::RegisterLocalStorageHandler(mitk::BaseLocalStorageHandler *lsh) { m_RegisteredLocalStorageHandlers.push_back(lsh); } void mitk::BaseRenderer::UnregisterLocalStorageHandler(mitk::BaseLocalStorageHandler *lsh) { m_RegisteredLocalStorageHandlers.remove(lsh); } void mitk::BaseRenderer::SetDataStorage(DataStorage *storage) { if (storage != m_DataStorage && storage != nullptr) { m_DataStorage = storage; m_BindDispatcherInteractor->SetDataStorage(m_DataStorage); this->Modified(); } } mitk::Dispatcher::Pointer mitk::BaseRenderer::GetDispatcher() const { return m_BindDispatcherInteractor->GetDispatcher(); } void mitk::BaseRenderer::Resize(int w, int h) { m_RenderWindow->SetSize(w, h); } void mitk::BaseRenderer::InitRenderer(vtkRenderWindow *renderwindow) { if (m_RenderWindow != renderwindow) { if (m_RenderWindow != nullptr) { m_RenderWindow->Delete(); } m_RenderWindow = renderwindow; if (m_RenderWindow != nullptr) { m_RenderWindow->Register(nullptr); } } RemoveAllLocalStorages(); if (m_CameraController.IsNotNull()) { m_CameraController->SetRenderer(this); } } void mitk::BaseRenderer::InitSize(int w, int h) { m_RenderWindow->SetSize(w, h); } void mitk::BaseRenderer::SetWorldTimeGeometry(const mitk::TimeGeometry* geometry) { if (m_WorldTimeGeometry == geometry) { return; } m_WorldTimeGeometry = geometry; this->UpdateCurrentGeometries(); } void mitk::BaseRenderer::SetSlice(unsigned int slice) { if (m_Slice == slice) { return; } m_Slice = slice; this->UpdateCurrentGeometries(); } void mitk::BaseRenderer::SetTimeStep(unsigned int timeStep) { if (m_TimeStep == timeStep) { return; } m_TimeStep = timeStep; m_TimeStepUpdateTime.Modified(); this->UpdateCurrentGeometries(); } mitk::TimeStepType mitk::BaseRenderer::GetTimeStep(const mitk::BaseData* data) const { if ((data == nullptr) || (data->IsInitialized() == false)) { return -1; } return data->GetTimeGeometry()->TimePointToTimeStep(GetTime()); } mitk::ScalarType mitk::BaseRenderer::GetTime() const { if (m_WorldTimeGeometry.IsNull()) { return 0; } else { ScalarType timeInMS = m_WorldTimeGeometry->TimeStepToTimePoint(GetTimeStep()); if (timeInMS == itk::NumericTraits::NonpositiveMin()) return 0; else return timeInMS; } } void mitk::BaseRenderer::SetGeometry(const itk::EventObject& geometrySendEvent) { const auto* sendEvent = dynamic_cast(&geometrySendEvent); if (nullptr == sendEvent) { return; } SetWorldTimeGeometry(sendEvent->GetTimeGeometry()); } void mitk::BaseRenderer::UpdateGeometry(const itk::EventObject& geometryUpdateEvent) { const auto* updateEvent = dynamic_cast(&geometryUpdateEvent); if (nullptr == updateEvent) { return; } if (m_CurrentWorldGeometry.IsNull()) { return; } const auto* slicedWorldGeometry = dynamic_cast(m_CurrentWorldGeometry.GetPointer()); if (slicedWorldGeometry) { PlaneGeometry* geometry2D = slicedWorldGeometry->GetPlaneGeometry(m_Slice); SetCurrentWorldPlaneGeometry(geometry2D); // calls Modified() } } void mitk::BaseRenderer::SetGeometrySlice(const itk::EventObject& geometrySliceEvent) { const auto* sliceEvent = dynamic_cast(&geometrySliceEvent); if (nullptr == sliceEvent) { return; } this->SetSlice(sliceEvent->GetPos()); } void mitk::BaseRenderer::SetGeometryTime(const itk::EventObject& geometryTimeEvent) { const auto* timeEvent = dynamic_cast(&geometryTimeEvent); if (nullptr == timeEvent) { return; } this->SetTimeStep(timeEvent->GetPos()); } void mitk::BaseRenderer::SendUpdateSlice() { m_CurrentWorldPlaneGeometryUpdateTime.Modified(); } void mitk::BaseRenderer::SetMapperID(MapperSlotId id) { if (m_MapperID != id) { bool useDepthPeeling = Standard3D == id; m_VtkRenderer->SetUseDepthPeeling(useDepthPeeling); m_VtkRenderer->SetUseDepthPeelingForVolumes(useDepthPeeling); m_MapperID = id; this->Modified(); } } int* mitk::BaseRenderer::GetSize() const { return m_RenderWindow->GetSize(); } int* mitk::BaseRenderer::GetViewportSize() const { return m_VtkRenderer->GetSize(); } const double* mitk::BaseRenderer::GetBounds() const { return m_Bounds; } void mitk::BaseRenderer::RequestUpdate() { SetConstrainZoomingAndPanning(true); RenderingManager::GetInstance()->RequestUpdate(m_RenderWindow); } void mitk::BaseRenderer::ForceImmediateUpdate() { RenderingManager::GetInstance()->ForceImmediateUpdate(m_RenderWindow); } unsigned int mitk::BaseRenderer::GetNumberOfVisibleLODEnabledMappers() const { return m_NumberOfVisibleLODEnabledMappers; } void mitk::BaseRenderer::SetSliceNavigationController(mitk::SliceNavigationController *SlicenavigationController) { if (SlicenavigationController == nullptr) return; // copy worldgeometry SlicenavigationController->SetInputWorldTimeGeometry(SlicenavigationController->GetCreatedWorldGeometry()); SlicenavigationController->Update(); // set new m_SliceNavigationController = SlicenavigationController; m_SliceNavigationController->SetRenderer(this); if (m_SliceNavigationController.IsNotNull()) { m_SliceNavigationController->ConnectGeometrySendEvent(this); m_SliceNavigationController->ConnectGeometryUpdateEvent(this); m_SliceNavigationController->ConnectGeometrySliceEvent(this); m_SliceNavigationController->ConnectGeometryTimeEvent(this); } } void mitk::BaseRenderer::DisplayToWorld(const Point2D& displayPoint, Point3D& worldIndex) const { if (m_MapperID == BaseRenderer::Standard2D) { double display[3], * world; // For the right z-position in display coordinates, take the focal point, convert it to display and use it for // correct depth. double* displayCoord; double cameraFP[4]; // Get camera focal point and position. Convert to display (screen) // coordinates. We need a depth value for z-buffer. this->GetVtkRenderer()->GetActiveCamera()->GetFocalPoint(cameraFP); cameraFP[3] = 0.0; this->GetVtkRenderer()->SetWorldPoint(cameraFP[0], cameraFP[1], cameraFP[2], cameraFP[3]); this->GetVtkRenderer()->WorldToDisplay(); displayCoord = this->GetVtkRenderer()->GetDisplayPoint(); // now convert the display point to world coordinates display[0] = displayPoint[0]; display[1] = displayPoint[1]; display[2] = displayCoord[2]; this->GetVtkRenderer()->SetDisplayPoint(display); this->GetVtkRenderer()->DisplayToWorld(); world = this->GetVtkRenderer()->GetWorldPoint(); for (int i = 0; i < 3; i++) { worldIndex[i] = world[i] / world[3]; } } else if (m_MapperID == BaseRenderer::Standard3D) { // Seems to be the same code as above, but subclasses may contain different implementations. PickWorldPoint(displayPoint, worldIndex); } return; } void mitk::BaseRenderer::DisplayToPlane(const Point2D &displayPoint, Point2D &planePointInMM) const { if (m_MapperID == BaseRenderer::Standard2D) { Point3D worldPoint; this->DisplayToWorld(displayPoint, worldPoint); m_CurrentWorldPlaneGeometry->Map(worldPoint, planePointInMM); } else if (m_MapperID == BaseRenderer::Standard3D) { MITK_WARN << "No conversion possible with 3D mapper."; return; } return; } void mitk::BaseRenderer::WorldToDisplay(const Point3D &worldIndex, Point2D &displayPoint) const { double world[4], *display; world[0] = worldIndex[0]; world[1] = worldIndex[1]; world[2] = worldIndex[2]; world[3] = 1.0; this->GetVtkRenderer()->SetWorldPoint(world); this->GetVtkRenderer()->WorldToDisplay(); display = this->GetVtkRenderer()->GetDisplayPoint(); displayPoint[0] = display[0]; displayPoint[1] = display[1]; return; } void mitk::BaseRenderer::WorldToView(const mitk::Point3D &worldIndex, mitk::Point2D &viewPoint) const { double world[4], *view; world[0] = worldIndex[0]; world[1] = worldIndex[1]; world[2] = worldIndex[2]; world[3] = 1.0; this->GetVtkRenderer()->SetWorldPoint(world); this->GetVtkRenderer()->WorldToView(); view = this->GetVtkRenderer()->GetViewPoint(); this->GetVtkRenderer()->ViewToNormalizedViewport(view[0], view[1], view[2]); viewPoint[0] = view[0] * this->GetViewportSize()[0]; viewPoint[1] = view[1] * this->GetViewportSize()[1]; return; } void mitk::BaseRenderer::PlaneToDisplay(const Point2D &planePointInMM, Point2D &displayPoint) const { Point3D worldPoint; m_CurrentWorldPlaneGeometry->Map(planePointInMM, worldPoint); this->WorldToDisplay(worldPoint, displayPoint); return; } void mitk::BaseRenderer::PlaneToView(const Point2D &planePointInMM, Point2D &viewPoint) const { Point3D worldPoint; m_CurrentWorldPlaneGeometry->Map(planePointInMM, worldPoint); this->WorldToView(worldPoint,viewPoint); return; } double mitk::BaseRenderer::GetScaleFactorMMPerDisplayUnit() const { if (this->GetMapperID() == BaseRenderer::Standard2D) { // GetParallelScale returns half of the height of the render window in mm. // Divided by the half size of the Display size in pixel givest the mm per pixel. return this->GetVtkRenderer()->GetActiveCamera()->GetParallelScale() * 2.0 / GetViewportSize()[1]; } else return 1.0; } mitk::Point2D mitk::BaseRenderer::GetDisplaySizeInMM() const { Point2D dispSizeInMM; dispSizeInMM[0] = GetSizeX() * GetScaleFactorMMPerDisplayUnit(); dispSizeInMM[1] = GetSizeY() * GetScaleFactorMMPerDisplayUnit(); return dispSizeInMM; } mitk::Point2D mitk::BaseRenderer::GetViewportSizeInMM() const { Point2D dispSizeInMM; dispSizeInMM[0] = GetViewportSize()[0] * GetScaleFactorMMPerDisplayUnit(); dispSizeInMM[1] = GetViewportSize()[1] * GetScaleFactorMMPerDisplayUnit(); return dispSizeInMM; } mitk::Point2D mitk::BaseRenderer::GetOriginInMM() const { Point2D originPx; originPx[0] = m_VtkRenderer->GetOrigin()[0]; originPx[1] = m_VtkRenderer->GetOrigin()[1]; Point2D displayGeometryOriginInMM; DisplayToPlane(originPx, displayGeometryOriginInMM); // top left of the render window (Origin) return displayGeometryOriginInMM; } void mitk::BaseRenderer::SetConstrainZoomingAndPanning(bool constrain) { m_ConstrainZoomingAndPanning = constrain; if (m_ConstrainZoomingAndPanning) { this->GetCameraController()->AdjustCameraToPlane(); } } void mitk::BaseRenderer::UpdateCurrentGeometries() { if (m_WorldTimeGeometry.IsNull()) { // simply mark the base renderer as modified Modified(); } if (m_TimeStep >= m_WorldTimeGeometry->CountTimeSteps()) { m_TimeStep = m_WorldTimeGeometry->CountTimeSteps() - 1; } auto slicedWorldGeometry = dynamic_cast(m_WorldTimeGeometry->GetGeometryForTimeStep(m_TimeStep).GetPointer()); if (slicedWorldGeometry != nullptr) { if (m_Slice >= slicedWorldGeometry->GetSlices()) { m_Slice = slicedWorldGeometry->GetSlices() - 1; } SetCurrentWorldGeometry(slicedWorldGeometry); SetCurrentWorldPlaneGeometry(slicedWorldGeometry->GetPlaneGeometry(m_Slice)); } } void mitk::BaseRenderer::SetCurrentWorldPlaneGeometry(const mitk::PlaneGeometry* geometry2d) { - if (m_CurrentWorldPlaneGeometry != geometry2d) + if (m_CurrentWorldPlaneGeometry == geometry2d) { - m_CurrentWorldPlaneGeometry = geometry2d->Clone(); - m_CurrentWorldPlaneGeometryData->SetPlaneGeometry(m_CurrentWorldPlaneGeometry); - m_CurrentWorldPlaneGeometryUpdateTime.Modified(); - Modified(); + return; } + + m_CurrentWorldPlaneGeometry = geometry2d->Clone(); + m_CurrentWorldPlaneGeometryData->SetPlaneGeometry(m_CurrentWorldPlaneGeometry); + m_CurrentWorldPlaneGeometryUpdateTime.Modified(); + Modified(); } void mitk::BaseRenderer::SetCurrentWorldGeometry(const mitk::BaseGeometry* geometry) { + if (m_CurrentWorldGeometry == geometry) + { + return; + } + m_CurrentWorldGeometry = geometry; if (geometry == nullptr) { m_Bounds[0] = 0; m_Bounds[1] = 0; m_Bounds[2] = 0; m_Bounds[3] = 0; m_Bounds[4] = 0; m_Bounds[5] = 0; m_EmptyWorldGeometry = true; return; } + BoundingBox::Pointer boundingBox = m_CurrentWorldGeometry->CalculateBoundingBoxRelativeToTransform(nullptr); const BoundingBox::BoundsArrayType& worldBounds = boundingBox->GetBounds(); m_Bounds[0] = worldBounds[0]; m_Bounds[1] = worldBounds[1]; m_Bounds[2] = worldBounds[2]; m_Bounds[3] = worldBounds[3]; m_Bounds[4] = worldBounds[4]; m_Bounds[5] = worldBounds[5]; + if (boundingBox->GetDiagonalLength2() <= mitk::eps) { m_EmptyWorldGeometry = true; } else { m_EmptyWorldGeometry = false; } } void mitk::BaseRenderer::PrintSelf(std::ostream &os, itk::Indent indent) const { os << indent << " MapperID: " << m_MapperID << std::endl; os << indent << " Slice: " << m_Slice << std::endl; os << indent << " TimeStep: " << m_TimeStep << std::endl; os << indent << " CurrentWorldPlaneGeometry: "; if (m_CurrentWorldPlaneGeometry.IsNull()) os << "nullptr" << std::endl; else m_CurrentWorldPlaneGeometry->Print(os, indent); os << indent << " CurrentWorldPlaneGeometryUpdateTime: " << m_CurrentWorldPlaneGeometryUpdateTime << std::endl; os << indent << " CurrentWorldPlaneGeometryTransformTime: " << m_CurrentWorldPlaneGeometryTransformTime << std::endl; Superclass::PrintSelf(os, indent); } diff --git a/Modules/QtWidgets/include/QmitkAbstractMultiWidget.h b/Modules/QtWidgets/include/QmitkAbstractMultiWidget.h index e3d5a3558d..e50f98aeed 100644 --- a/Modules/QtWidgets/include/QmitkAbstractMultiWidget.h +++ b/Modules/QtWidgets/include/QmitkAbstractMultiWidget.h @@ -1,160 +1,161 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QMITKABSTRACTMULTIWIDGET_H #define QMITKABSTRACTMULTIWIDGET_H // mitk qt widgets module #include "MitkQtWidgetsExports.h" // mitk core #include #include #include #include // qt #include // c++ #include #include class QmitkMultiWidgetLayoutManager; class QmitkRenderWindow; class QmitkRenderWindowWidget; namespace mitk { class DataStorage; class InteractionEventHandler; } /** * @brief The 'QmitkAbstractMultiWidget' is a 'QWidget' that can be subclassed to display multiple render windows at once. * Render windows can dynamically be added and removed to change the layout of the multi widget. * A subclass of this multi widget can be used inside a 'QmitkAbstractMultiWidgetEditor'. * * The class uses the 'DisplayActionEventBroadcast' and 'DisplayActionEventHandler' classes to * load a state machine and set an event configuration. * * Using the 'Synchronize' function the user can enable or disable the synchronization of display action events. * See 'DisplayActionEventFunctions'-class for the different synchronized and non-synchronized functions used. */ class MITKQTWIDGETS_EXPORT QmitkAbstractMultiWidget : public QWidget { Q_OBJECT public: using RenderWindowWidgetPointer = std::shared_ptr; using RenderWindowWidgetMap = std::map>; using RenderWindowHash = QHash; using ViewDirection = mitk::BaseRenderer::ViewDirection; QmitkAbstractMultiWidget(QWidget* parent = 0, Qt::WindowFlags f = 0, const QString& multiWidgetName = "multiwidget"); virtual ~QmitkAbstractMultiWidget(); virtual void InitializeMultiWidget() = 0; virtual void MultiWidgetOpened() { } virtual void MultiWidgetClosed() { } virtual void SetDataStorage(mitk::DataStorage* dataStorage); mitk::DataStorage* GetDataStorage() const; int GetRowCount() const; int GetColumnCount() const; virtual void SetLayout(int row, int column); virtual void Synchronize(bool) { }; virtual void SetInteractionScheme(mitk::InteractionSchemeSwitcher::InteractionScheme scheme); mitk::InteractionEventHandler* GetInteractionEventHandler(); void SetDisplayActionEventHandler(std::unique_ptr displayActionEventHandler); mitk::DisplayActionEventHandler* GetDisplayActionEventHandler(); RenderWindowWidgetMap GetRenderWindowWidgets() const; RenderWindowWidgetMap Get2DRenderWindowWidgets() const; RenderWindowWidgetMap Get3DRenderWindowWidgets() const; RenderWindowWidgetPointer GetRenderWindowWidget(int row, int column) const; RenderWindowWidgetPointer GetRenderWindowWidget(const QString& widgetName) const; RenderWindowWidgetPointer GetRenderWindowWidget(const QmitkRenderWindow* renderWindow) const; RenderWindowHash GetRenderWindows() const; QmitkRenderWindow* GetRenderWindow(int row, int column) const; virtual QmitkRenderWindow* GetRenderWindow(const QString& widgetName) const; virtual QmitkRenderWindow* GetRenderWindow(const ViewDirection& viewDirection) const = 0; virtual void SetActiveRenderWindowWidget(RenderWindowWidgetPointer activeRenderWindowWidget); RenderWindowWidgetPointer GetActiveRenderWindowWidget() const; RenderWindowWidgetPointer GetFirstRenderWindowWidget() const; RenderWindowWidgetPointer GetLastRenderWindowWidget() const; virtual QString GetNameFromIndex(int row, int column) const; virtual QString GetNameFromIndex(size_t index) const; unsigned int GetNumberOfRenderWindowWidgets() const; void RequestUpdate(const QString& widgetName); void RequestUpdateAll(); void ForceImmediateUpdate(const QString& widgetName); void ForceImmediateUpdateAll(); virtual void SetSelectedPosition(const mitk::Point3D& newPosition, const QString& widgetName) = 0; virtual const mitk::Point3D GetSelectedPosition(const QString& widgetName) const = 0; virtual void SetCrosshairVisibility(bool visible) = 0; virtual bool GetCrosshairVisibility() const = 0; + virtual void SetCrosshairGap(unsigned int gapSize) = 0; virtual void ResetCrosshair() = 0; virtual void SetWidgetPlaneMode(int mode) = 0; virtual void ActivateMenuWidget(bool state); virtual bool IsMenuWidgetEnabled() const; QmitkMultiWidgetLayoutManager* GetMultiWidgetLayoutManager() const; signals: void ActiveRenderWindowChanged(); private slots: void OnFocusChanged(itk::Object*, const itk::EventObject& event); protected: virtual void AddRenderWindowWidget(const QString& widgetName, RenderWindowWidgetPointer renderWindowWidget); virtual void RemoveRenderWindowWidget(); private: /** * @brief This function will be called by the function 'SetLayout' and * can be implemented and customized in the subclasses. */ virtual void SetLayoutImpl() = 0; /** * @brief This function will be called by the function 'SetInteractionScheme' and * can be implemented and customized in the subclasses. */ virtual void SetInteractionSchemeImpl() = 0; struct Impl; std::unique_ptr m_Impl; }; #endif // QMITKABSTRACTMULTIWIDGET_H diff --git a/Modules/QtWidgets/include/QmitkMxNMultiWidget.h b/Modules/QtWidgets/include/QmitkMxNMultiWidget.h index 98326606f0..f979ff414c 100644 --- a/Modules/QtWidgets/include/QmitkMxNMultiWidget.h +++ b/Modules/QtWidgets/include/QmitkMxNMultiWidget.h @@ -1,88 +1,92 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QMITKMXNMULTIWIDGET_H #define QMITKMXNMULTIWIDGET_H // qt widgets module #include "MitkQtWidgetsExports.h" #include "QmitkAbstractMultiWidget.h" /** * @brief The 'QmitkMxNMultiWidget' is a 'QmitkAbstractMultiWidget' that is used to display multiple render windows at once. * Render windows can dynamically be added and removed to change the layout of the multi widget. This * is done by using the 'SetLayout'-function to define a layout. This will automatically add or remove * the appropriate number of render window widgets. */ class MITKQTWIDGETS_EXPORT QmitkMxNMultiWidget : public QmitkAbstractMultiWidget { Q_OBJECT public: QmitkMxNMultiWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0, const QString& multiWidgetName = "mxnmulti"); ~QmitkMxNMultiWidget(); void InitializeMultiWidget() override; void Synchronize(bool synchronized) override; QmitkRenderWindow* GetRenderWindow(const QString& widgetName) const override; QmitkRenderWindow* GetRenderWindow(const mitk::BaseRenderer::ViewDirection& viewDirection) const override; void SetActiveRenderWindowWidget(RenderWindowWidgetPointer activeRenderWindowWidget) override; void SetSelectedPosition(const mitk::Point3D& newPosition, const QString& widgetName) override; const mitk::Point3D GetSelectedPosition(const QString& widgetName) const override; - void SetCrosshairVisibility(bool activate) override; - bool GetCrosshairVisibility() const override { return m_CrosshairVisibility; } + void SetCrosshairVisibility(bool visible) override; + bool GetCrosshairVisibility() const override; + void SetCrosshairGap(unsigned int gapSize) override; void ResetCrosshair() override; void SetWidgetPlaneMode(int userMode) override; mitk::SliceNavigationController* GetTimeNavigationController(); + void AddPlanesToDataStorage(); + void RemovePlanesFromDataStorage(); + public Q_SLOTS: // mouse events void wheelEvent(QWheelEvent* e) override; void mousePressEvent(QMouseEvent* e) override; void moveEvent(QMoveEvent* e) override; Q_SIGNALS: void WheelMoved(QWheelEvent *); void Moved(); protected: void RemoveRenderWindowWidget() override; private: void SetLayoutImpl() override; void SetInteractionSchemeImpl() override { } void CreateRenderWindowWidget(); mitk::SliceNavigationController* m_TimeNavigationController; bool m_CrosshairVisibility; }; #endif // QMITKMXNMULTIWIDGET_H diff --git a/Modules/QtWidgets/include/QmitkRenderWindowWidget.h b/Modules/QtWidgets/include/QmitkRenderWindowWidget.h index 736b361b62..f72268056c 100644 --- a/Modules/QtWidgets/include/QmitkRenderWindowWidget.h +++ b/Modules/QtWidgets/include/QmitkRenderWindowWidget.h @@ -1,106 +1,114 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QMITKRENDERWINDOWWIDGET_H #define QMITKRENDERWINDOWWIDGET_H // qt widgets module #include "MitkQtWidgetsExports.h" #include "QmitkRenderWindow.h" // mitk core +#include #include -#include #include // qt #include #include #include class vtkCornerAnnotation; /** * @brief The 'QmitkRenderWindowWidget' is a QFrame that holds a render window -* and some associates properties, like a crosshair (pointset) and decorations. +* and some associates properties, e.g. decorations. * Decorations are corner annotation (text and color), frame color or background color * and can be set using this class. * The 'QmitkRenderWindowWidget' is used inside a 'QmitkAbstractMultiWidget', where a map contains * several render window widgets to create the multi widget display. +* This class uses a CrosshairManager, which allows to use plane geometries as crosshair. */ class MITKQTWIDGETS_EXPORT QmitkRenderWindowWidget : public QFrame { Q_OBJECT public: QmitkRenderWindowWidget( QWidget* parent = nullptr, const QString& widgetName = "", mitk::DataStorage* dataStorage = nullptr); ~QmitkRenderWindowWidget() override; void SetDataStorage(mitk::DataStorage* dataStorage); const QString& GetWidgetName() const { return m_WidgetName; }; QmitkRenderWindow* GetRenderWindow() const { return m_RenderWindow; }; mitk::SliceNavigationController* GetSliceNavigationController() const; void RequestUpdate(); void ForceImmediateUpdate(); void SetGradientBackgroundColors(const mitk::Color& upper, const mitk::Color& lower); void ShowGradientBackground(bool enable); std::pair GetGradientBackgroundColors() const { return m_GradientBackgroundColors; }; bool IsGradientBackgroundOn() const; void SetDecorationColor(const mitk::Color& color); mitk::Color GetDecorationColor() const { return m_DecorationColor; }; void ShowColoredRectangle(bool show); bool IsColoredRectangleVisible() const; void ShowCornerAnnotation(bool show); bool IsCornerAnnotationVisible() const; void SetCornerAnnotationText(const std::string& cornerAnnotation); std::string GetCornerAnnotationText() const; bool IsRenderWindowMenuActivated() const; - void ActivateCrosshair(bool activate); + void SetCrosshairVisibility(bool visible); + bool GetCrosshairVisibility(); + void SetCrosshairGap(unsigned int gapSize); + + void AddPlanesToDataStorage(); + void RemovePlanesFromDataStorage(); + + void SetCrosshairPosition(const mitk::Point3D& newPosition); + mitk::Point3D GetCrosshairPosition() const; + + void SetGeometry(const itk::EventObject& event); private: void InitializeGUI(); void InitializeDecorations(); - void SetCrosshair(mitk::Point3D selectedPoint); - QString m_WidgetName; QHBoxLayout* m_Layout; mitk::DataStorage* m_DataStorage; QmitkRenderWindow* m_RenderWindow; - mitk::DataNode::Pointer m_PointSetNode; - mitk::PointSet::Pointer m_PointSet; + mitk::CrosshairManager::Pointer m_CrosshairManager; std::pair m_GradientBackgroundColors; mitk::Color m_DecorationColor; vtkSmartPointer m_CornerAnnotation; }; #endif // QMITKRENDERWINDOWWIDGET_H diff --git a/Modules/QtWidgets/include/QmitkStdMultiWidget.h b/Modules/QtWidgets/include/QmitkStdMultiWidget.h index 7d1cca97a8..1ecd723bb7 100644 --- a/Modules/QtWidgets/include/QmitkStdMultiWidget.h +++ b/Modules/QtWidgets/include/QmitkStdMultiWidget.h @@ -1,161 +1,162 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef QMITKSTDMULTIWIDGET_H #define QMITKSTDMULTIWIDGET_H // qt widgets module #include "MitkQtWidgetsExports.h" #include "QmitkAbstractMultiWidget.h" /** * @brief The 'QmitkStdMultiWidget' is a 'QmitkAbstractMultiWidget' that is used to display multiple render windows at once. * Render windows are predefined in a 2x2 design with 3 different 2D view planes and a 3D render window. */ class MITKQTWIDGETS_EXPORT QmitkStdMultiWidget : public QmitkAbstractMultiWidget { Q_OBJECT public: QmitkStdMultiWidget( QWidget *parent = nullptr, Qt::WindowFlags f = nullptr, const QString &name = "stdmulti"); ~QmitkStdMultiWidget() override; virtual void InitializeMultiWidget() override; virtual QmitkRenderWindow* GetRenderWindow(const QString& widgetName) const override; virtual QmitkRenderWindow* GetRenderWindow(const mitk::BaseRenderer::ViewDirection& viewDirection) const override; virtual void SetSelectedPosition(const mitk::Point3D& newPosition, const QString& widgetName) override; virtual const mitk::Point3D GetSelectedPosition(const QString& widgetName) const override; virtual void SetCrosshairVisibility(bool) override; virtual bool GetCrosshairVisibility() const override; + void SetCrosshairGap(unsigned int gapSize) override; virtual void ResetCrosshair() override; virtual void SetWidgetPlaneMode(int mode) override; mitk::SliceNavigationController* GetTimeNavigationController(); void AddPlanesToDataStorage(); void RemovePlanesFromDataStorage(); /** \brief Listener to the CrosshairPositionEvent Ensures the CrosshairPositionEvent is handled only once and at the end of the Qt-Event loop */ void HandleCrosshairPositionEvent(); /** * @brief Convenience method to get a render window widget. * @param number of the widget (0-3) * @return The render window widget */ QmitkRenderWindow* GetRenderWindow(unsigned int number) const; QmitkRenderWindow* GetRenderWindow1() const; QmitkRenderWindow* GetRenderWindow2() const; QmitkRenderWindow* GetRenderWindow3() const; QmitkRenderWindow* GetRenderWindow4() const; /** * @brief Convenience method to get a widget plane. * @param number of the widget plane (1-3) * @return The widget plane as data node */ mitk::DataNode::Pointer GetWidgetPlane(unsigned int number) const; mitk::DataNode::Pointer GetWidgetPlane1() const; mitk::DataNode::Pointer GetWidgetPlane2() const; mitk::DataNode::Pointer GetWidgetPlane3() const; /** * @brief SetDecorationColor Set the color of the decoration of the 4 widgets. * * This is used to color the frame of the renderwindow and the corner annatation. * For the first 3 widgets, this color is a property of the helper object nodes * which contain the respective plane geometry. For widget 4, this is a member, * since there is no data node for this widget. */ void SetDecorationColor(unsigned int widgetNumber, mitk::Color color); /** * @brief GetDecorationColorForWidget Get the color for annotation, crosshair and rectangle. * @param widgetNumber Number of the renderwindow (0-3). * @return Color in mitk format. */ mitk::Color GetDecorationColor(unsigned int widgetNumber); public Q_SLOTS: // mouse events virtual void mousePressEvent(QMouseEvent*) override; virtual void moveEvent(QMoveEvent* e) override; virtual void wheelEvent(QWheelEvent* e) override; /// Receives the signal from HandleCrosshairPositionEvent, executes the StatusBar update void HandleCrosshairPositionEventDelayed(); void Fit(); void AddDisplayPlaneSubTree(); void EnsureDisplayContainsPoint(mitk::BaseRenderer *renderer, const mitk::Point3D &p); void SetWidgetPlaneVisibility(const char *widgetName, bool visible, mitk::BaseRenderer *renderer = nullptr); void SetWidgetPlanesVisibility(bool visible, mitk::BaseRenderer *renderer = nullptr); Q_SIGNALS: void NotifyCrosshairVisibilityChanged(bool visible); void NotifyCrosshairRotationModeChanged(int mode); void WheelMoved(QWheelEvent *); void Moved(); private: virtual void SetLayoutImpl() override; virtual void SetInteractionSchemeImpl() override { } void CreateRenderWindowWidgets(); mitk::SliceNavigationController* m_TimeNavigationController; /** * @brief The 3 helper objects which contain the plane geometry. */ mitk::DataNode::Pointer m_PlaneNode1; mitk::DataNode::Pointer m_PlaneNode2; mitk::DataNode::Pointer m_PlaneNode3; /** * @brief m_ParentNodeForGeometryPlanes This helper object is added to the datastorage * and contains the 3 planes for displaying the image geometry (crosshair and 3D planes). */ mitk::DataNode::Pointer m_ParentNodeForGeometryPlanes; /** * @brief m_DecorationColorWidget4 color for annotation and rectangle of widget 4. * * For other widgets1-3, the color is a property of the respective data node. * There is no node for widget 4, hence, we need an extra member. */ mitk::Color m_DecorationColorWidget4; bool m_PendingCrosshairPositionEvent; }; #endif // QMITKSTDMULTIWIDGET_H diff --git a/Modules/QtWidgets/src/QmitkMxNMultiWidget.cpp b/Modules/QtWidgets/src/QmitkMxNMultiWidget.cpp index b571dcd6a8..3409c04ce2 100644 --- a/Modules/QtWidgets/src/QmitkMxNMultiWidget.cpp +++ b/Modules/QtWidgets/src/QmitkMxNMultiWidget.cpp @@ -1,291 +1,348 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkMxNMultiWidget.h" #include "QmitkRenderWindowWidget.h" // mitk core #include #include #include // qt #include +#include QmitkMxNMultiWidget::QmitkMxNMultiWidget(QWidget* parent, Qt::WindowFlags f/* = 0*/, const QString& multiWidgetName/* = "mxnmulti"*/) : QmitkAbstractMultiWidget(parent, f, multiWidgetName) , m_TimeNavigationController(nullptr) , m_CrosshairVisibility(false) { m_TimeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); } QmitkMxNMultiWidget::~QmitkMxNMultiWidget() { auto allRenderWindows = this->GetRenderWindows(); for (auto& renderWindow : allRenderWindows) { m_TimeNavigationController->Disconnect(renderWindow->GetSliceNavigationController()); } } - void QmitkMxNMultiWidget::InitializeMultiWidget() { SetLayout(1, 1); SetDisplayActionEventHandler(std::make_unique()); auto displayActionEventHandler = GetDisplayActionEventHandler(); if (nullptr != displayActionEventHandler) { displayActionEventHandler->InitActions(); } } void QmitkMxNMultiWidget::Synchronize(bool synchronized) { if (synchronized) { SetDisplayActionEventHandler(std::make_unique()); } else { SetDisplayActionEventHandler(std::make_unique()); } auto displayActionEventHandler = GetDisplayActionEventHandler(); if (nullptr != displayActionEventHandler) { displayActionEventHandler->InitActions(); } } QmitkRenderWindow* QmitkMxNMultiWidget::GetRenderWindow(const QString& widgetName) const { if ("axial" == widgetName || "sagittal" == widgetName || "coronal" == widgetName || "3d" == widgetName) { return GetActiveRenderWindowWidget()->GetRenderWindow(); } return QmitkAbstractMultiWidget::GetRenderWindow(widgetName); } QmitkRenderWindow* QmitkMxNMultiWidget::GetRenderWindow(const mitk::BaseRenderer::ViewDirection& /*viewDirection*/) const { // currently no mapping between view directions and render windows // simply return the currently active render window return GetActiveRenderWindowWidget()->GetRenderWindow(); } void QmitkMxNMultiWidget::SetActiveRenderWindowWidget(RenderWindowWidgetPointer activeRenderWindowWidget) { auto currentActiveRenderWindowWidget = GetActiveRenderWindowWidget(); if (currentActiveRenderWindowWidget == activeRenderWindowWidget) { return; } // reset the decoration color of the previously active render window widget if (nullptr != currentActiveRenderWindowWidget) { auto decorationColor = currentActiveRenderWindowWidget->GetDecorationColor(); QColor hexColor(decorationColor[0] * 255, decorationColor[1] * 255, decorationColor[2] * 255); currentActiveRenderWindowWidget->setStyleSheet("QmitkRenderWindowWidget { border: 2px solid " + hexColor.name(QColor::HexRgb) + "; }"); } // set the new decoration color of the currently active render window widget if (nullptr != activeRenderWindowWidget) { activeRenderWindowWidget->setStyleSheet("QmitkRenderWindowWidget { border: 2px solid #FF6464; }"); } QmitkAbstractMultiWidget::SetActiveRenderWindowWidget(activeRenderWindowWidget); } void QmitkMxNMultiWidget::SetSelectedPosition(const mitk::Point3D& newPosition, const QString& widgetName) { RenderWindowWidgetPointer renderWindowWidget; if (widgetName.isNull()) { renderWindowWidget = GetActiveRenderWindowWidget(); } else { renderWindowWidget = GetRenderWindowWidget(widgetName); } if (nullptr != renderWindowWidget) { renderWindowWidget->GetSliceNavigationController()->SelectSliceByPoint(newPosition); - renderWindowWidget->RequestUpdate(); + renderWindowWidget->SetCrosshairPosition(newPosition); return; } MITK_ERROR << "Position can not be set for an unknown render window widget."; } -const mitk::Point3D QmitkMxNMultiWidget::GetSelectedPosition(const QString& /*widgetName*/) const +const mitk::Point3D QmitkMxNMultiWidget::GetSelectedPosition(const QString& widgetName) const { - // see T26208 - return mitk::Point3D(); + RenderWindowWidgetPointer renderWindowWidget; + if (widgetName.isNull()) + { + renderWindowWidget = GetActiveRenderWindowWidget(); + } + else + { + renderWindowWidget = GetRenderWindowWidget(widgetName); + } + + if (nullptr != renderWindowWidget) + { + return renderWindowWidget->GetCrosshairPosition(); + } + + MITK_ERROR << "Crosshair position can not be retrieved."; + return mitk::Point3D(0.0); } -void QmitkMxNMultiWidget::SetCrosshairVisibility(bool activate) +void QmitkMxNMultiWidget::SetCrosshairVisibility(bool visible) { - auto renderWindowWidgets = GetRenderWindowWidgets(); - for (const auto& renderWindowWidget : renderWindowWidgets) + // get the specific render window that sent the signal + QmitkRenderWindow* renderWindow = qobject_cast(sender()); + if (nullptr == renderWindow) + { + return; + } + + auto renderWindowWidget = this->GetRenderWindowWidget(renderWindow); + renderWindowWidget->SetCrosshairVisibility(visible); +} + +bool QmitkMxNMultiWidget::GetCrosshairVisibility() const +{ + // get the specific render window that sent the signal + QmitkRenderWindow* renderWindow = qobject_cast(sender()); + if (nullptr == renderWindow) { - renderWindowWidget.second->ActivateCrosshair(activate); + return false; } - m_CrosshairVisibility = activate; + auto renderWindowWidget = this->GetRenderWindowWidget(renderWindow); + return renderWindowWidget->GetCrosshairVisibility(); +} + +void QmitkMxNMultiWidget::SetCrosshairGap(unsigned int gapSize) +{ + auto renderWindowWidgets = this->GetRenderWindowWidgets(); + for (const auto& renderWindowWidget : renderWindowWidgets) + { + renderWindowWidget.second->SetCrosshairGap(gapSize); + } } void QmitkMxNMultiWidget::ResetCrosshair() { auto dataStorage = GetDataStorage(); if (nullptr == dataStorage) { return; } // get the specific render window that sent the signal - QmitkRenderWindow* renderwindow = qobject_cast(sender()); - if (nullptr == renderwindow) + QmitkRenderWindow* renderWindow = qobject_cast(sender()); + if (nullptr == renderWindow) { return; } - mitk::RenderingManager::GetInstance()->InitializeViewByBoundingObjects(renderwindow->GetRenderWindow(), dataStorage); + mitk::RenderingManager::GetInstance()->InitializeViewByBoundingObjects(renderWindow->GetRenderWindow(), dataStorage); SetWidgetPlaneMode(mitk::InteractionSchemeSwitcher::MITKStandard); } void QmitkMxNMultiWidget::SetWidgetPlaneMode(int userMode) { MITK_DEBUG << "Changing crosshair mode to " << userMode; switch (userMode) { case 0: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKStandard); break; case 1: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKRotationUncoupled); break; case 2: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKRotationCoupled); break; case 3: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKSwivel); break; } } mitk::SliceNavigationController* QmitkMxNMultiWidget::GetTimeNavigationController() { return m_TimeNavigationController; } +void QmitkMxNMultiWidget::AddPlanesToDataStorage() +{ + auto renderWindowWidgets = this->GetRenderWindowWidgets(); + for (const auto& renderWindowWidget : renderWindowWidgets) + { + renderWindowWidget.second->AddPlanesToDataStorage(); + } +} + +void QmitkMxNMultiWidget::RemovePlanesFromDataStorage() +{ + auto renderWindowWidgets = this->GetRenderWindowWidgets(); + for (const auto& renderWindowWidget : renderWindowWidgets) + { + renderWindowWidget.second->RemovePlanesFromDataStorage(); + } +} + ////////////////////////////////////////////////////////////////////////// // PUBLIC SLOTS // MOUSE EVENTS ////////////////////////////////////////////////////////////////////////// void QmitkMxNMultiWidget::wheelEvent(QWheelEvent* e) { emit WheelMoved(e); } void QmitkMxNMultiWidget::mousePressEvent(QMouseEvent*) { // nothing here, but necessary for mouse interactions (.xml-configuration files) } void QmitkMxNMultiWidget::moveEvent(QMoveEvent* e) { QWidget::moveEvent(e); // it is necessary to readjust the position of the overlays as the MultiWidget has moved // unfortunately it's not done by QmitkRenderWindow::moveEvent -> must be done here emit Moved(); } void QmitkMxNMultiWidget::RemoveRenderWindowWidget() { auto renderWindowWidgets = this->GetRenderWindowWidgets(); auto iterator = renderWindowWidgets.find(this->GetNameFromIndex(this->GetNumberOfRenderWindowWidgets() - 1)); if (iterator == renderWindowWidgets.end()) { return; } // disconnect each signal of this render window widget RenderWindowWidgetPointer renderWindowWidgetToRemove = iterator->second; m_TimeNavigationController->Disconnect(renderWindowWidgetToRemove->GetSliceNavigationController()); QmitkAbstractMultiWidget::RemoveRenderWindowWidget(); } ////////////////////////////////////////////////////////////////////////// // PRIVATE ////////////////////////////////////////////////////////////////////////// void QmitkMxNMultiWidget::SetLayoutImpl() { int requiredRenderWindowWidgets = GetRowCount() * GetColumnCount(); int existingRenderWindowWidgets = GetRenderWindowWidgets().size(); int difference = requiredRenderWindowWidgets - existingRenderWindowWidgets; while (0 < difference) { // more render window widgets needed CreateRenderWindowWidget(); --difference; } while (0 > difference) { // less render window widgets needed RemoveRenderWindowWidget(); ++difference; } auto firstRenderWindowWidget = GetFirstRenderWindowWidget(); if (nullptr != firstRenderWindowWidget) { SetActiveRenderWindowWidget(firstRenderWindowWidget); } GetMultiWidgetLayoutManager()->SetLayoutDesign(QmitkMultiWidgetLayoutManager::LayoutDesign::DEFAULT); } void QmitkMxNMultiWidget::CreateRenderWindowWidget() { // create the render window widget and connect signal / slot QString renderWindowWidgetName = GetNameFromIndex(GetNumberOfRenderWindowWidgets()); RenderWindowWidgetPointer renderWindowWidget = std::make_shared(this, renderWindowWidgetName, GetDataStorage()); renderWindowWidget->SetCornerAnnotationText(renderWindowWidgetName.toStdString()); AddRenderWindowWidget(renderWindowWidgetName, renderWindowWidget); auto renderWindow = renderWindowWidget->GetRenderWindow(); auto layoutManager = GetMultiWidgetLayoutManager(); connect(renderWindow, &QmitkRenderWindow::LayoutDesignChanged, layoutManager, &QmitkMultiWidgetLayoutManager::SetLayoutDesign); connect(renderWindow, &QmitkRenderWindow::ResetView, this, &QmitkMxNMultiWidget::ResetCrosshair); connect(renderWindow, &QmitkRenderWindow::CrosshairVisibilityChanged, this, &QmitkMxNMultiWidget::SetCrosshairVisibility); connect(renderWindow, &QmitkRenderWindow::CrosshairRotationModeChanged, this, &QmitkMxNMultiWidget::SetWidgetPlaneMode); // connect time navigation controller to react on geometry time events with the render window's slice naviation controller m_TimeNavigationController->ConnectGeometryTimeEvent(renderWindow->GetSliceNavigationController()); // reverse connection between the render window's slice navigation controller and the time navigation controller renderWindow->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); } diff --git a/Modules/QtWidgets/src/QmitkRenderWindowWidget.cpp b/Modules/QtWidgets/src/QmitkRenderWindowWidget.cpp index da8ab69b9a..c7b0872bbd 100644 --- a/Modules/QtWidgets/src/QmitkRenderWindowWidget.cpp +++ b/Modules/QtWidgets/src/QmitkRenderWindowWidget.cpp @@ -1,249 +1,264 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkRenderWindowWidget.h" // vtk #include #include QmitkRenderWindowWidget::QmitkRenderWindowWidget(QWidget* parent/* = nullptr*/, const QString& widgetName/* = ""*/, mitk::DataStorage* dataStorage/* = nullptr*/) : QFrame(parent) , m_WidgetName(widgetName) , m_DataStorage(dataStorage) , m_RenderWindow(nullptr) - , m_PointSetNode(nullptr) - , m_PointSet(nullptr) + , m_CrosshairManager(nullptr) { this->InitializeGUI(); } QmitkRenderWindowWidget::~QmitkRenderWindowWidget() { auto sliceNavigationController = m_RenderWindow->GetSliceNavigationController(); if (nullptr != sliceNavigationController) { - sliceNavigationController->SetCrosshairEvent.RemoveListener(mitk::MessageDelegate1(this, &QmitkRenderWindowWidget::SetCrosshair)); - } - if (nullptr != m_DataStorage) - { - m_DataStorage->Remove(m_PointSetNode); + sliceNavigationController->SetCrosshairEvent.RemoveListener( + mitk::MessageDelegate1( + this, &QmitkRenderWindowWidget::SetCrosshairPosition)); } } void QmitkRenderWindowWidget::SetDataStorage(mitk::DataStorage* dataStorage) { if (dataStorage == m_DataStorage) { return; } m_DataStorage = dataStorage; if (nullptr != m_RenderWindow) { mitk::BaseRenderer::GetInstance(m_RenderWindow->renderWindow())->SetDataStorage(dataStorage); } + + m_CrosshairManager->SetDataStorage(m_DataStorage); } mitk::SliceNavigationController* QmitkRenderWindowWidget::GetSliceNavigationController() const { return m_RenderWindow->GetSliceNavigationController(); } void QmitkRenderWindowWidget::RequestUpdate() { mitk::RenderingManager::GetInstance()->RequestUpdate(m_RenderWindow->renderWindow()); } void QmitkRenderWindowWidget::ForceImmediateUpdate() { mitk::RenderingManager::GetInstance()->ForceImmediateUpdate(m_RenderWindow->renderWindow()); } void QmitkRenderWindowWidget::SetGradientBackgroundColors(const mitk::Color& upper, const mitk::Color& lower) { vtkRenderer* vtkRenderer = m_RenderWindow->GetRenderer()->GetVtkRenderer(); if (nullptr == vtkRenderer) { return; } m_GradientBackgroundColors.first = upper; m_GradientBackgroundColors.second = lower; vtkRenderer->SetBackground(lower[0], lower[1], lower[2]); vtkRenderer->SetBackground2(upper[0], upper[1], upper[2]); ShowGradientBackground(true); } void QmitkRenderWindowWidget::ShowGradientBackground(bool show) { m_RenderWindow->GetRenderer()->GetVtkRenderer()->SetGradientBackground(show); } bool QmitkRenderWindowWidget::IsGradientBackgroundOn() const { return m_RenderWindow->GetRenderer()->GetVtkRenderer()->GetGradientBackground(); } void QmitkRenderWindowWidget::SetDecorationColor(const mitk::Color& color) { m_DecorationColor = color; m_CornerAnnotation->GetTextProperty()->SetColor(m_DecorationColor[0], m_DecorationColor[1], m_DecorationColor[2]); QColor hexColor(m_DecorationColor[0] * 255, m_DecorationColor[1] * 255, m_DecorationColor[2] * 255); setStyleSheet("QmitkRenderWindowWidget { border: 2px solid " + hexColor.name(QColor::HexRgb) + "; }"); } void QmitkRenderWindowWidget::ShowColoredRectangle(bool show) { if (show) { setFrameStyle(QFrame::Box | QFrame::Plain); } else { setFrameStyle(NoFrame); } } bool QmitkRenderWindowWidget::IsColoredRectangleVisible() const { return frameStyle() > 0; } void QmitkRenderWindowWidget::ShowCornerAnnotation(bool show) { m_CornerAnnotation->SetVisibility(show); } bool QmitkRenderWindowWidget::IsCornerAnnotationVisible() const { return m_CornerAnnotation->GetVisibility() > 0; } void QmitkRenderWindowWidget::SetCornerAnnotationText(const std::string& cornerAnnotation) { m_CornerAnnotation->SetText(0, cornerAnnotation.c_str()); } std::string QmitkRenderWindowWidget::GetCornerAnnotationText() const { return std::string(m_CornerAnnotation->GetText(0)); } bool QmitkRenderWindowWidget::IsRenderWindowMenuActivated() const { return m_RenderWindow->GetActivateMenuWidgetFlag(); } -void QmitkRenderWindowWidget::ActivateCrosshair(bool activate) +void QmitkRenderWindowWidget::SetCrosshairVisibility(bool visible) { - if (nullptr == m_DataStorage) - { - return; - } + m_CrosshairManager->SetCrosshairVisibility(visible); + this->RequestUpdate(); +} - if (activate) - { - try - { - m_DataStorage->Add(m_PointSetNode); - } - catch(std::invalid_argument& /*e*/) - { - // crosshair already existing - return; - } - } - else - { - m_DataStorage->Remove(m_PointSetNode); - } +bool QmitkRenderWindowWidget::GetCrosshairVisibility() +{ + return m_CrosshairManager->GetCrosshairVisibility(); +} + +void QmitkRenderWindowWidget::SetCrosshairGap(unsigned int gapSize) +{ + m_CrosshairManager->SetCrosshairGap(gapSize); +} + +void QmitkRenderWindowWidget::AddPlanesToDataStorage() +{ + m_CrosshairManager->AddPlanesToDataStorage(); +} + +void QmitkRenderWindowWidget::RemovePlanesFromDataStorage() +{ + m_CrosshairManager->RemovePlanesFromDataStorage(); } void QmitkRenderWindowWidget::InitializeGUI() { m_Layout = new QHBoxLayout(this); m_Layout->setMargin(0); setLayout(m_Layout); setSizePolicy(QSizePolicy::Expanding, QSizePolicy::Expanding); setContentsMargins(0, 0, 0, 0); if (nullptr == m_DataStorage) { return; } mitk::RenderingManager::GetInstance()->SetDataStorage(m_DataStorage); // create render window for this render window widget m_RenderWindow = new QmitkRenderWindow(this, m_WidgetName, nullptr); m_RenderWindow->SetLayoutIndex(mitk::BaseRenderer::ViewDirection::SAGITTAL); - m_RenderWindow->GetSliceNavigationController()->SetDefaultViewDirection(mitk::SliceNavigationController::Sagittal); - m_RenderWindow->GetSliceNavigationController()->SetCrosshairEvent.AddListener(mitk::MessageDelegate1(this, &QmitkRenderWindowWidget::SetCrosshair)); - mitk::TimeGeometry::ConstPointer timeGeometry = m_DataStorage->ComputeBoundingGeometry3D(m_DataStorage->GetAll()); - mitk::RenderingManager::GetInstance()->InitializeView(m_RenderWindow->GetVtkRenderWindow(), timeGeometry); + auto sliceNavigationController = m_RenderWindow->GetSliceNavigationController(); + sliceNavigationController->SetDefaultViewDirection(mitk::SliceNavigationController::Sagittal); + m_Layout->addWidget(m_RenderWindow); - // add point set as a crosshair - m_PointSetNode = mitk::DataNode::New(); - m_PointSetNode->SetProperty("name", mitk::StringProperty::New("Crosshair of render window " + m_WidgetName.toStdString())); - m_PointSetNode->SetProperty("helper object", mitk::BoolProperty::New(true)); // crosshair-node should typically be invisible + // set colors and corner annotation + InitializeDecorations(); - // set the crosshair only visible for this specific renderer - m_PointSetNode->SetBoolProperty("fixedLayer", true, m_RenderWindow->GetRenderer()); - m_PointSetNode->SetVisibility(true, m_RenderWindow->GetRenderer()); - m_PointSetNode->SetVisibility(false); + // use crosshair manager + m_CrosshairManager = mitk::CrosshairManager::New(m_DataStorage, m_RenderWindow->GetRenderer()); + sliceNavigationController->SetCrosshairEvent.AddListener( + mitk::MessageDelegate1( + this, &QmitkRenderWindowWidget::SetCrosshairPosition)); - m_PointSet = mitk::PointSet::New(); - m_PointSetNode->SetData(m_PointSet); + // finally add observer, after all relevant objects have been created / initialized + sliceNavigationController->ConnectGeometrySendEvent(this); - // set colors and corner annotation - InitializeDecorations(); + mitk::TimeGeometry::ConstPointer timeGeometry = m_DataStorage->ComputeBoundingGeometry3D(m_DataStorage->GetAll()); + mitk::RenderingManager::GetInstance()->InitializeView(m_RenderWindow->GetVtkRenderWindow(), timeGeometry); } void QmitkRenderWindowWidget::InitializeDecorations() { vtkRenderer* vtkRenderer = m_RenderWindow->GetRenderer()->GetVtkRenderer(); if (nullptr == vtkRenderer) { return; } // initialize background color gradients float black[3] = { 0.0f, 0.0f, 0.0f }; SetGradientBackgroundColors(black, black); // initialize annotation text and decoration color setFrameStyle(QFrame::Box | QFrame::Plain); m_CornerAnnotation = vtkSmartPointer::New(); m_CornerAnnotation->SetText(0, "Sagittal"); m_CornerAnnotation->SetMaximumFontSize(12); if (0 == vtkRenderer->HasViewProp(m_CornerAnnotation)) { vtkRenderer->AddViewProp(m_CornerAnnotation); } float white[3] = { 1.0f, 1.0f, 1.0f }; SetDecorationColor(mitk::Color(white)); } -void QmitkRenderWindowWidget::SetCrosshair(mitk::Point3D selectedPoint) +void QmitkRenderWindowWidget::SetCrosshairPosition(const mitk::Point3D& newPosition) { - m_PointSet->SetPoint(1, selectedPoint, 0); - mitk::RenderingManager::GetInstance()->RequestUpdate(m_RenderWindow->renderWindow()); + m_CrosshairManager->SetCrosshairPosition(newPosition); + this->RequestUpdate(); +} + +mitk::Point3D QmitkRenderWindowWidget::GetCrosshairPosition() const +{ + return m_CrosshairManager->GetCrosshairPosition(); +} + +void QmitkRenderWindowWidget::SetGeometry(const itk::EventObject& event) +{ + if (!mitk::SliceNavigationController::GeometrySendEvent(nullptr, 0).CheckEvent(&event)) + { + return; + } + + auto sliceNavigationController = m_RenderWindow->GetSliceNavigationController(); + const auto* inputWorldTimeGeometry = sliceNavigationController->GetInputWorldTimeGeometry(); + m_CrosshairManager->ComputeOrientedTimeGeometries(inputWorldTimeGeometry); } diff --git a/Modules/QtWidgets/src/QmitkStdMultiWidget.cpp b/Modules/QtWidgets/src/QmitkStdMultiWidget.cpp index 3194fec820..7a2973bfd3 100644 --- a/Modules/QtWidgets/src/QmitkStdMultiWidget.cpp +++ b/Modules/QtWidgets/src/QmitkStdMultiWidget.cpp @@ -1,808 +1,815 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #define SMW_INFO MITK_INFO("widget.stdmulti") #include "QmitkStdMultiWidget.h" #include "QmitkRenderWindowWidget.h" // mitk core #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include #include // qt #include #include #include // vtk #include // c++ #include QmitkStdMultiWidget::QmitkStdMultiWidget(QWidget *parent, Qt::WindowFlags f/* = 0*/, const QString &name/* = "stdmulti"*/) : QmitkAbstractMultiWidget(parent, f, name) , m_TimeNavigationController(nullptr) , m_PendingCrosshairPositionEvent(false) { m_TimeNavigationController = mitk::RenderingManager::GetInstance()->GetTimeNavigationController(); } QmitkStdMultiWidget::~QmitkStdMultiWidget() { auto allRenderWindows = this->GetRenderWindows(); for (auto& renderWindow : allRenderWindows) { m_TimeNavigationController->Disconnect(renderWindow->GetSliceNavigationController()); } } void QmitkStdMultiWidget::InitializeMultiWidget() { // yellow is default color for widget4 m_DecorationColorWidget4[0] = 1.0f; m_DecorationColorWidget4[1] = 1.0f; m_DecorationColorWidget4[2] = 0.0f; SetLayout(2, 2); // transfer colors in WorldGeometry-Nodes of the associated Renderer mitk::IntProperty::Pointer layer; // of widget 1 m_PlaneNode1 = mitk::BaseRenderer::GetInstance(GetRenderWindow1()->renderWindow())->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode1->SetColor(GetDecorationColor(0)); layer = mitk::IntProperty::New(1000); m_PlaneNode1->SetProperty("layer", layer); // of widget 2 m_PlaneNode2 = mitk::BaseRenderer::GetInstance(GetRenderWindow2()->renderWindow())->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode2->SetColor(GetDecorationColor(1)); layer = mitk::IntProperty::New(1000); m_PlaneNode2->SetProperty("layer", layer); // of widget 3 m_PlaneNode3 = mitk::BaseRenderer::GetInstance(GetRenderWindow3()->renderWindow())->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode3->SetColor(GetDecorationColor(2)); layer = mitk::IntProperty::New(1000); m_PlaneNode3->SetProperty("layer", layer); // the parent node m_ParentNodeForGeometryPlanes = mitk::BaseRenderer::GetInstance(GetRenderWindow4()->renderWindow())->GetCurrentWorldPlaneGeometryNode(); layer = mitk::IntProperty::New(1000); m_ParentNodeForGeometryPlanes->SetProperty("layer", layer); AddDisplayPlaneSubTree(); SetDisplayActionEventHandler(std::make_unique()); auto displayActionEventHandler = GetDisplayActionEventHandler(); if (nullptr != displayActionEventHandler) { displayActionEventHandler->InitActions(); } } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow(const QString& widgetName) const { if ("axial" == widgetName) { return GetRenderWindow1(); } if ("sagittal" == widgetName) { return GetRenderWindow2(); } if ("coronal" == widgetName) { return GetRenderWindow3(); } if ("3d" == widgetName) { return GetRenderWindow4(); } return QmitkAbstractMultiWidget::GetRenderWindow(widgetName); } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow(const mitk::BaseRenderer::ViewDirection& viewDirection) const { return GetRenderWindow(static_cast(viewDirection)); } void QmitkStdMultiWidget::SetSelectedPosition(const mitk::Point3D& newPosition, const QString& /*widgetName*/) { GetRenderWindow1()->GetSliceNavigationController()->SelectSliceByPoint(newPosition); GetRenderWindow2()->GetSliceNavigationController()->SelectSliceByPoint(newPosition); GetRenderWindow3()->GetSliceNavigationController()->SelectSliceByPoint(newPosition); RequestUpdateAll(); } const mitk::Point3D QmitkStdMultiWidget::GetSelectedPosition(const QString& /*widgetName*/) const { const mitk::PlaneGeometry* plane1 = GetRenderWindow1()->GetSliceNavigationController()->GetCurrentPlaneGeometry(); const mitk::PlaneGeometry* plane2 = GetRenderWindow2()->GetSliceNavigationController()->GetCurrentPlaneGeometry(); const mitk::PlaneGeometry* plane3 = GetRenderWindow3()->GetSliceNavigationController()->GetCurrentPlaneGeometry(); mitk::Line3D line; if ((plane1 != nullptr) && (plane2 != nullptr) && (plane1->IntersectionLine(plane2, line))) { mitk::Point3D point; if ((plane3 != nullptr) && (plane3->IntersectionPoint(line, point))) { return point; } } return mitk::Point3D(); } void QmitkStdMultiWidget::SetCrosshairVisibility(bool visible) { if (m_PlaneNode1.IsNotNull()) { m_PlaneNode1->SetVisibility(visible); } if (m_PlaneNode2.IsNotNull()) { m_PlaneNode2->SetVisibility(visible); } if (m_PlaneNode3.IsNotNull()) { m_PlaneNode3->SetVisibility(visible); } emit NotifyCrosshairVisibilityChanged(visible); RequestUpdateAll(); } bool QmitkStdMultiWidget::GetCrosshairVisibility() const { bool crosshairVisibility = true; if (m_PlaneNode1.IsNotNull()) { bool visibilityProperty = false; m_PlaneNode1->GetVisibility(visibilityProperty, nullptr); crosshairVisibility &= visibilityProperty; } if (m_PlaneNode2.IsNotNull()) { bool visibilityProperty = false; crosshairVisibility &= m_PlaneNode2->GetVisibility(visibilityProperty, nullptr); crosshairVisibility &= visibilityProperty; } if (m_PlaneNode3.IsNotNull()) { bool visibilityProperty = false; crosshairVisibility &= m_PlaneNode3->GetVisibility(visibilityProperty, nullptr); crosshairVisibility &= visibilityProperty; } return crosshairVisibility; } +void QmitkStdMultiWidget::SetCrosshairGap(unsigned int gapSize) +{ + m_PlaneNode1->SetIntProperty("Crosshair.Gap Size", gapSize); + m_PlaneNode2->SetIntProperty("Crosshair.Gap Size", gapSize); + m_PlaneNode3->SetIntProperty("Crosshair.Gap Size", gapSize); +} + void QmitkStdMultiWidget::ResetCrosshair() { auto dataStorage = GetDataStorage(); if (nullptr == dataStorage) { return; } mitk::RenderingManager::GetInstance()->InitializeViewsByBoundingObjects(dataStorage); SetWidgetPlaneMode(mitk::InteractionSchemeSwitcher::MITKStandard); } void QmitkStdMultiWidget::SetWidgetPlaneMode(int userMode) { MITK_DEBUG << "Changing crosshair mode to " << userMode; switch (userMode) { case 0: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKStandard); break; case 1: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKRotationUncoupled); break; case 2: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKRotationCoupled); break; case 3: SetInteractionScheme(mitk::InteractionSchemeSwitcher::MITKSwivel); break; } emit NotifyCrosshairRotationModeChanged(userMode); } mitk::SliceNavigationController* QmitkStdMultiWidget::GetTimeNavigationController() { return m_TimeNavigationController; } void QmitkStdMultiWidget::AddPlanesToDataStorage() { auto dataStorage = GetDataStorage(); if (nullptr == dataStorage) { return; } if (m_PlaneNode1.IsNotNull() && m_PlaneNode2.IsNotNull() && m_PlaneNode3.IsNotNull() && m_ParentNodeForGeometryPlanes.IsNotNull()) { dataStorage->Add(m_ParentNodeForGeometryPlanes); dataStorage->Add(m_PlaneNode1, m_ParentNodeForGeometryPlanes); dataStorage->Add(m_PlaneNode2, m_ParentNodeForGeometryPlanes); dataStorage->Add(m_PlaneNode3, m_ParentNodeForGeometryPlanes); } } void QmitkStdMultiWidget::RemovePlanesFromDataStorage() { auto dataStorage = GetDataStorage(); if (nullptr == dataStorage) { return; } if (m_PlaneNode1.IsNotNull() && m_PlaneNode2.IsNotNull() && m_PlaneNode3.IsNotNull() && m_ParentNodeForGeometryPlanes.IsNotNull()) { dataStorage->Remove(m_PlaneNode1); dataStorage->Remove(m_PlaneNode2); dataStorage->Remove(m_PlaneNode3); dataStorage->Remove(m_ParentNodeForGeometryPlanes); } } void QmitkStdMultiWidget::HandleCrosshairPositionEvent() { if (!m_PendingCrosshairPositionEvent) { m_PendingCrosshairPositionEvent = true; QTimer::singleShot(0, this, SLOT(HandleCrosshairPositionEventDelayed())); } } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow(unsigned int number) const { switch (number) { case 0: return GetRenderWindow1(); case 1: return GetRenderWindow2(); case 2: return GetRenderWindow3(); case 3: return GetRenderWindow4(); default: MITK_ERROR << "Requested unknown render window"; break; } return nullptr; } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow1() const { return QmitkAbstractMultiWidget::GetRenderWindow(GetNameFromIndex(0, 0)); } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow2() const { return QmitkAbstractMultiWidget::GetRenderWindow(GetNameFromIndex(0, 1)); } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow3() const { return QmitkAbstractMultiWidget::GetRenderWindow(GetNameFromIndex(1, 0)); } QmitkRenderWindow* QmitkStdMultiWidget::GetRenderWindow4() const { return QmitkAbstractMultiWidget::GetRenderWindow(GetNameFromIndex(1, 1)); } mitk::DataNode::Pointer QmitkStdMultiWidget::GetWidgetPlane1() const { return m_PlaneNode1; } mitk::DataNode::Pointer QmitkStdMultiWidget::GetWidgetPlane2() const { return m_PlaneNode2; } mitk::DataNode::Pointer QmitkStdMultiWidget::GetWidgetPlane3() const { return m_PlaneNode3; } mitk::DataNode::Pointer QmitkStdMultiWidget::GetWidgetPlane(unsigned number) const { switch (number) { case 1: return m_PlaneNode1; case 2: return m_PlaneNode2; case 3: return m_PlaneNode3; default: MITK_ERROR << "Requested unknown render window"; break; } return nullptr; } void QmitkStdMultiWidget::SetDecorationColor(unsigned int widgetNumber, mitk::Color color) { switch (widgetNumber) { case 0: if (m_PlaneNode1.IsNotNull()) { m_PlaneNode1->SetColor(color); } break; case 1: if (m_PlaneNode2.IsNotNull()) { m_PlaneNode2->SetColor(color); } break; case 2: if (m_PlaneNode3.IsNotNull()) { m_PlaneNode3->SetColor(color); } break; case 3: m_DecorationColorWidget4 = color; break; default: MITK_ERROR << "Decoration color for unknown widget!"; break; } } mitk::Color QmitkStdMultiWidget::GetDecorationColor(unsigned int widgetNumber) { // The implementation looks a bit messy here, but it avoids // synchronization of the color of the geometry nodes and an // internal member here. // Default colors were chosen for decent visibility. // Feel free to change your preferences in the workbench. float tmp[3] = { 0.0f, 0.0f, 0.0f }; switch (widgetNumber) { case 0: { if (m_PlaneNode1.IsNotNull()) { if (m_PlaneNode1->GetColor(tmp)) { return dynamic_cast(m_PlaneNode1->GetProperty("color"))->GetColor(); } } float red[3] = { 0.753f, 0.0f, 0.0f }; // This is #C00000 in hex return mitk::Color(red); } case 1: { if (m_PlaneNode2.IsNotNull()) { if (m_PlaneNode2->GetColor(tmp)) { return dynamic_cast(m_PlaneNode2->GetProperty("color"))->GetColor(); } } float green[3] = { 0.0f, 0.69f, 0.0f }; // This is #00B000 in hex return mitk::Color(green); } case 2: { if (m_PlaneNode3.IsNotNull()) { if (m_PlaneNode3->GetColor(tmp)) { return dynamic_cast(m_PlaneNode3->GetProperty("color"))->GetColor(); } } float blue[3] = { 0.0, 0.502f, 1.0f }; // This is #0080FF in hex return mitk::Color(blue); } case 3: { return m_DecorationColorWidget4; } default: MITK_ERROR << "Decoration color for unknown widget!"; float black[3] = { 0.0f, 0.0f, 0.0f }; return mitk::Color(black); } } void QmitkStdMultiWidget::mousePressEvent(QMouseEvent*) { // nothing here, but necessary for mouse interactions (.xml-configuration files) } void QmitkStdMultiWidget::moveEvent(QMoveEvent* e) { QWidget::moveEvent(e); // it is necessary to readjust the position of the Annotation as the StdMultiWidget has moved // unfortunately it's not done by QmitkRenderWindow::moveEvent -> must be done here emit Moved(); } void QmitkStdMultiWidget::wheelEvent(QWheelEvent* e) { emit WheelMoved(e); } void QmitkStdMultiWidget::HandleCrosshairPositionEventDelayed() { auto dataStorage = GetDataStorage(); if (nullptr == dataStorage) { return; } m_PendingCrosshairPositionEvent = false; // find image with highest layer mitk::TNodePredicateDataType::Pointer isImageData = mitk::TNodePredicateDataType::New(); mitk::DataStorage::SetOfObjects::ConstPointer nodes = dataStorage->GetSubset(isImageData).GetPointer(); mitk::Point3D crosshairPos = GetSelectedPosition(""); mitk::BaseRenderer* baseRenderer = GetRenderWindow1()->GetSliceNavigationController()->GetRenderer(); auto globalCurrentTimePoint = baseRenderer->GetTime(); mitk::DataNode::Pointer node = mitk::FindTopmostVisibleNode(nodes, crosshairPos, globalCurrentTimePoint, baseRenderer); mitk::DataNode::Pointer topSourceNode; mitk::Image::Pointer image; bool isBinary = false; int component = 0; if (node.IsNotNull()) { node->GetBoolProperty("binary", isBinary); if (isBinary) { mitk::DataStorage::SetOfObjects::ConstPointer sourcenodes = dataStorage->GetSources(node, nullptr, true); if (!sourcenodes->empty()) { topSourceNode = mitk::FindTopmostVisibleNode(sourcenodes, crosshairPos, globalCurrentTimePoint, baseRenderer); } if (topSourceNode.IsNotNull()) { image = dynamic_cast(topSourceNode->GetData()); topSourceNode->GetIntProperty("Image.Displayed Component", component); } else { image = dynamic_cast(node->GetData()); node->GetIntProperty("Image.Displayed Component", component); } } else { image = dynamic_cast(node->GetData()); node->GetIntProperty("Image.Displayed Component", component); } } std::string statusText; std::stringstream stream; itk::Index<3> p; unsigned int timestep = baseRenderer->GetTimeStep(); if (image.IsNotNull() && (image->GetTimeSteps() > timestep)) { image->GetGeometry()->WorldToIndex(crosshairPos, p); stream.precision(2); stream << "Position: <" << std::fixed << crosshairPos[0] << ", " << std::fixed << crosshairPos[1] << ", " << std::fixed << crosshairPos[2] << "> mm"; stream << "; Index: <" << p[0] << ", " << p[1] << ", " << p[2] << "> "; mitk::ScalarType pixelValue; mitkPixelTypeMultiplex5(mitk::FastSinglePixelAccess, image->GetChannelDescriptor().GetPixelType(), image, image->GetVolumeData(image->GetTimeGeometry()->TimePointToTimeStep(globalCurrentTimePoint)), p, pixelValue, component); if (fabs(pixelValue) > 1000000 || fabs(pixelValue) < 0.01) { stream << "; Time: " << globalCurrentTimePoint << " ms; Pixelvalue: " << std::scientific << pixelValue << " "; } else { stream << "; Time: " << globalCurrentTimePoint << " ms; Pixelvalue: " << pixelValue << " "; } } else { stream << "No image information at this position!"; } statusText = stream.str(); mitk::StatusBar::GetInstance()->DisplayGreyValueText(statusText.c_str()); } void QmitkStdMultiWidget::Fit() { vtkSmartPointer vtkrenderer; vtkrenderer = mitk::BaseRenderer::GetInstance(GetRenderWindow1()->renderWindow())->GetVtkRenderer(); if (nullptr != vtkrenderer) { vtkrenderer->ResetCamera(); } vtkrenderer = mitk::BaseRenderer::GetInstance(GetRenderWindow2()->renderWindow())->GetVtkRenderer(); if (nullptr != vtkrenderer) { vtkrenderer->ResetCamera(); } vtkrenderer = mitk::BaseRenderer::GetInstance(GetRenderWindow3()->renderWindow())->GetVtkRenderer(); if (nullptr != vtkrenderer) { vtkrenderer->ResetCamera(); } vtkrenderer = mitk::BaseRenderer::GetInstance(GetRenderWindow4()->renderWindow())->GetVtkRenderer(); if (nullptr != vtkrenderer) { vtkrenderer->ResetCamera(); } mitk::BaseRenderer::GetInstance(GetRenderWindow1()->renderWindow())->GetCameraController()->Fit(); mitk::BaseRenderer::GetInstance(GetRenderWindow2()->renderWindow())->GetCameraController()->Fit(); mitk::BaseRenderer::GetInstance(GetRenderWindow3()->renderWindow())->GetCameraController()->Fit(); mitk::BaseRenderer::GetInstance(GetRenderWindow4()->renderWindow())->GetCameraController()->Fit(); int w = vtkObject::GetGlobalWarningDisplay(); vtkObject::GlobalWarningDisplayOff(); vtkObject::SetGlobalWarningDisplay(w); } void QmitkStdMultiWidget::AddDisplayPlaneSubTree() { // add the displayed planes of the multiwidget to a node to which the subtree // @a planesSubTree points ... mitk::PlaneGeometryDataMapper2D::Pointer mapper; // ... of widget 1 mitk::BaseRenderer* renderer1 = mitk::BaseRenderer::GetInstance(GetRenderWindow1()->renderWindow()); m_PlaneNode1 = renderer1->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode1->SetProperty("visible", mitk::BoolProperty::New(true)); m_PlaneNode1->SetProperty("name", mitk::StringProperty::New(std::string(renderer1->GetName()) + ".plane")); m_PlaneNode1->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_PlaneNode1->SetProperty("helper object", mitk::BoolProperty::New(true)); mapper = mitk::PlaneGeometryDataMapper2D::New(); m_PlaneNode1->SetMapper(mitk::BaseRenderer::Standard2D, mapper); // ... of widget 2 mitk::BaseRenderer* renderer2 = mitk::BaseRenderer::GetInstance(GetRenderWindow2()->renderWindow()); m_PlaneNode2 = renderer2->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode2->SetProperty("visible", mitk::BoolProperty::New(true)); m_PlaneNode2->SetProperty("name", mitk::StringProperty::New(std::string(renderer2->GetName()) + ".plane")); m_PlaneNode2->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_PlaneNode2->SetProperty("helper object", mitk::BoolProperty::New(true)); mapper = mitk::PlaneGeometryDataMapper2D::New(); m_PlaneNode2->SetMapper(mitk::BaseRenderer::Standard2D, mapper); // ... of widget 3 mitk::BaseRenderer *renderer3 = mitk::BaseRenderer::GetInstance(GetRenderWindow3()->renderWindow()); m_PlaneNode3 = renderer3->GetCurrentWorldPlaneGeometryNode(); m_PlaneNode3->SetProperty("visible", mitk::BoolProperty::New(true)); m_PlaneNode3->SetProperty("name", mitk::StringProperty::New(std::string(renderer3->GetName()) + ".plane")); m_PlaneNode3->SetProperty("includeInBoundingBox", mitk::BoolProperty::New(false)); m_PlaneNode3->SetProperty("helper object", mitk::BoolProperty::New(true)); mapper = mitk::PlaneGeometryDataMapper2D::New(); m_PlaneNode3->SetMapper(mitk::BaseRenderer::Standard2D, mapper); m_ParentNodeForGeometryPlanes = mitk::DataNode::New(); m_ParentNodeForGeometryPlanes->SetProperty("name", mitk::StringProperty::New("Widgets")); m_ParentNodeForGeometryPlanes->SetProperty("helper object", mitk::BoolProperty::New(true)); } void QmitkStdMultiWidget::EnsureDisplayContainsPoint(mitk::BaseRenderer *renderer, const mitk::Point3D &p) { mitk::Point2D pointOnDisplay; renderer->WorldToDisplay(p, pointOnDisplay); if (pointOnDisplay[0] < renderer->GetVtkRenderer()->GetOrigin()[0] || pointOnDisplay[1] < renderer->GetVtkRenderer()->GetOrigin()[1] || pointOnDisplay[0] > renderer->GetVtkRenderer()->GetOrigin()[0] + renderer->GetViewportSize()[0] || pointOnDisplay[1] > renderer->GetVtkRenderer()->GetOrigin()[1] + renderer->GetViewportSize()[1]) { mitk::Point2D pointOnPlane; renderer->GetCurrentWorldPlaneGeometry()->Map(p, pointOnPlane); renderer->GetCameraController()->MoveCameraToPoint(pointOnPlane); } } void QmitkStdMultiWidget::SetWidgetPlaneVisibility(const char *widgetName, bool visible, mitk::BaseRenderer *renderer) { auto dataStorage = GetDataStorage(); if (nullptr != dataStorage) { mitk::DataNode* dataNode = dataStorage->GetNamedNode(widgetName); if (dataNode != nullptr) { dataNode->SetVisibility(visible, renderer); } } } void QmitkStdMultiWidget::SetWidgetPlanesVisibility(bool visible, mitk::BaseRenderer *renderer) { if (m_PlaneNode1.IsNotNull()) { m_PlaneNode1->SetVisibility(visible, renderer); } if (m_PlaneNode2.IsNotNull()) { m_PlaneNode2->SetVisibility(visible, renderer); } if (m_PlaneNode3.IsNotNull()) { m_PlaneNode3->SetVisibility(visible, renderer); } mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } ////////////////////////////////////////////////////////////////////////// // PRIVATE ////////////////////////////////////////////////////////////////////////// void QmitkStdMultiWidget::SetLayoutImpl() { CreateRenderWindowWidgets(); GetMultiWidgetLayoutManager()->SetLayoutDesign(QmitkMultiWidgetLayoutManager::LayoutDesign::DEFAULT); // Initialize views as axial, sagittal, coronal to all data objects in DataStorage auto geo = GetDataStorage()->ComputeBoundingGeometry3D(GetDataStorage()->GetAll()); mitk::RenderingManager::GetInstance()->InitializeViews(geo); } void QmitkStdMultiWidget::CreateRenderWindowWidgets() { // create axial render window (widget) QString renderWindowWidgetName = GetNameFromIndex(0, 0); RenderWindowWidgetPointer renderWindowWidget1 = std::make_shared(this, renderWindowWidgetName, GetDataStorage()); auto renderWindow1 = renderWindowWidget1->GetRenderWindow(); renderWindow1->GetSliceNavigationController()->SetDefaultViewDirection(mitk::SliceNavigationController::Axial); renderWindowWidget1->SetDecorationColor(GetDecorationColor(0)); renderWindowWidget1->SetCornerAnnotationText("Axial"); renderWindowWidget1->GetRenderWindow()->SetLayoutIndex(ViewDirection::AXIAL); AddRenderWindowWidget(renderWindowWidgetName, renderWindowWidget1); // create sagittal render window (widget) renderWindowWidgetName = GetNameFromIndex(0, 1); RenderWindowWidgetPointer renderWindowWidget2 = std::make_shared(this, renderWindowWidgetName, GetDataStorage()); auto renderWindow2 = renderWindowWidget2->GetRenderWindow(); renderWindow2->GetSliceNavigationController()->SetDefaultViewDirection(mitk::SliceNavigationController::Sagittal); renderWindowWidget2->SetDecorationColor(GetDecorationColor(1)); renderWindowWidget2->setStyleSheet("border: 0px"); renderWindowWidget2->SetCornerAnnotationText("Sagittal"); renderWindowWidget2->GetRenderWindow()->SetLayoutIndex(ViewDirection::SAGITTAL); AddRenderWindowWidget(renderWindowWidgetName, renderWindowWidget2); // create coronal render window (widget) renderWindowWidgetName = GetNameFromIndex(1, 0); RenderWindowWidgetPointer renderWindowWidget3 = std::make_shared(this, renderWindowWidgetName, GetDataStorage()); auto renderWindow3 = renderWindowWidget3->GetRenderWindow(); renderWindow3->GetSliceNavigationController()->SetDefaultViewDirection(mitk::SliceNavigationController::Coronal); renderWindowWidget3->SetDecorationColor(GetDecorationColor(2)); renderWindowWidget3->SetCornerAnnotationText("Coronal"); renderWindowWidget3->GetRenderWindow()->SetLayoutIndex(ViewDirection::CORONAL); AddRenderWindowWidget(renderWindowWidgetName, renderWindowWidget3); // create 3D render window (widget) renderWindowWidgetName = GetNameFromIndex(1, 1); RenderWindowWidgetPointer renderWindowWidget4 = std::make_shared(this, renderWindowWidgetName, GetDataStorage()); auto renderWindow4 = renderWindowWidget4->GetRenderWindow(); renderWindow4->GetSliceNavigationController()->SetDefaultViewDirection(mitk::SliceNavigationController::Original); renderWindowWidget4->SetDecorationColor(GetDecorationColor(3)); renderWindowWidget4->SetCornerAnnotationText("3D"); renderWindowWidget4->GetRenderWindow()->SetLayoutIndex(ViewDirection::THREE_D); mitk::BaseRenderer::GetInstance(renderWindowWidget4->GetRenderWindow()->renderWindow())->SetMapperID(mitk::BaseRenderer::Standard3D); AddRenderWindowWidget(renderWindowWidgetName, renderWindowWidget4); SetActiveRenderWindowWidget(renderWindowWidget1); // connect to the "time navigation controller": send time via sliceNavigationControllers m_TimeNavigationController->ConnectGeometryTimeEvent(renderWindow1->GetSliceNavigationController()); m_TimeNavigationController->ConnectGeometryTimeEvent(renderWindow2->GetSliceNavigationController()); m_TimeNavigationController->ConnectGeometryTimeEvent(renderWindow3->GetSliceNavigationController()); m_TimeNavigationController->ConnectGeometryTimeEvent(renderWindow4->GetSliceNavigationController()); renderWindow1->GetSliceNavigationController()->ConnectGeometrySendEvent( mitk::BaseRenderer::GetInstance(renderWindow4->renderWindow())); // reverse connection between sliceNavigationControllers and timeNavigationController renderWindow1->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); renderWindow2->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); renderWindow3->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); //renderWindow4->GetSliceNavigationController()->ConnectGeometryTimeEvent(m_TimeNavigationController); auto layoutManager = GetMultiWidgetLayoutManager(); connect(renderWindow1, &QmitkRenderWindow::ResetView, this, &QmitkStdMultiWidget::ResetCrosshair); connect(renderWindow1, &QmitkRenderWindow::CrosshairVisibilityChanged, this, &QmitkStdMultiWidget::SetCrosshairVisibility); connect(renderWindow1, &QmitkRenderWindow::CrosshairRotationModeChanged, this, &QmitkStdMultiWidget::SetWidgetPlaneMode); connect(renderWindow1, &QmitkRenderWindow::LayoutDesignChanged, layoutManager, &QmitkMultiWidgetLayoutManager::SetLayoutDesign); connect(this, &QmitkStdMultiWidget::NotifyCrosshairVisibilityChanged, renderWindow1, &QmitkRenderWindow::UpdateCrosshairVisibility); connect(this, &QmitkStdMultiWidget::NotifyCrosshairRotationModeChanged, renderWindow1, &QmitkRenderWindow::UpdateCrosshairRotationMode); connect(renderWindow2, &QmitkRenderWindow::ResetView, this, &QmitkStdMultiWidget::ResetCrosshair); connect(renderWindow2, &QmitkRenderWindow::CrosshairVisibilityChanged, this, &QmitkStdMultiWidget::SetCrosshairVisibility); connect(renderWindow2, &QmitkRenderWindow::CrosshairRotationModeChanged, this, &QmitkStdMultiWidget::SetWidgetPlaneMode); connect(renderWindow2, &QmitkRenderWindow::LayoutDesignChanged, layoutManager, &QmitkMultiWidgetLayoutManager::SetLayoutDesign); connect(this, &QmitkStdMultiWidget::NotifyCrosshairVisibilityChanged, renderWindow2, &QmitkRenderWindow::UpdateCrosshairVisibility); connect(this, &QmitkStdMultiWidget::NotifyCrosshairRotationModeChanged, renderWindow2, &QmitkRenderWindow::UpdateCrosshairRotationMode); connect(renderWindow3, &QmitkRenderWindow::ResetView, this, &QmitkStdMultiWidget::ResetCrosshair); connect(renderWindow3, &QmitkRenderWindow::CrosshairVisibilityChanged, this, &QmitkStdMultiWidget::SetCrosshairVisibility); connect(renderWindow3, &QmitkRenderWindow::CrosshairRotationModeChanged, this, &QmitkStdMultiWidget::SetWidgetPlaneMode); connect(renderWindow3, &QmitkRenderWindow::LayoutDesignChanged, layoutManager, &QmitkMultiWidgetLayoutManager::SetLayoutDesign); connect(this, &QmitkStdMultiWidget::NotifyCrosshairVisibilityChanged, renderWindow3, &QmitkRenderWindow::UpdateCrosshairVisibility); connect(this, &QmitkStdMultiWidget::NotifyCrosshairRotationModeChanged, renderWindow3, &QmitkRenderWindow::UpdateCrosshairRotationMode); connect(renderWindow4, &QmitkRenderWindow::ResetView, this, &QmitkStdMultiWidget::ResetCrosshair); connect(renderWindow4, &QmitkRenderWindow::CrosshairVisibilityChanged, this, &QmitkStdMultiWidget::SetCrosshairVisibility); connect(renderWindow4, &QmitkRenderWindow::CrosshairRotationModeChanged, this, &QmitkStdMultiWidget::SetWidgetPlaneMode); connect(renderWindow4, &QmitkRenderWindow::LayoutDesignChanged, layoutManager, &QmitkMultiWidgetLayoutManager::SetLayoutDesign); connect(this, &QmitkStdMultiWidget::NotifyCrosshairVisibilityChanged, renderWindow4, &QmitkRenderWindow::UpdateCrosshairVisibility); connect(this, &QmitkStdMultiWidget::NotifyCrosshairRotationModeChanged, renderWindow4, &QmitkRenderWindow::UpdateCrosshairRotationMode); } diff --git a/Modules/Segmentation/Interactions/mitkCloseRegionTool.cpp b/Modules/Segmentation/Interactions/mitkCloseRegionTool.cpp new file mode 100644 index 0000000000..4e5cd15b69 --- /dev/null +++ b/Modules/Segmentation/Interactions/mitkCloseRegionTool.cpp @@ -0,0 +1,120 @@ +/*============================================================================ + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center (DKFZ) +All rights reserved. + +Use of this source code is governed by a 3-clause BSD license that can be +found in the LICENSE file. + +============================================================================*/ + +#include "mitkCloseRegionTool.h" + +// us +#include +#include +#include +#include + +#include + +#include +#include + +namespace mitk +{ + MITK_TOOL_MACRO(MITKSEGMENTATION_EXPORT, CloseRegionTool, "Close tool"); +} + +const char **mitk::CloseRegionTool::GetXPM() const +{ + return nullptr; +} + +us::ModuleResource mitk::CloseRegionTool::GetIconResource() const +{ + us::Module *module = us::GetModuleContext()->GetModule(); + us::ModuleResource resource = module->GetResource("Close_48x48.png"); + return resource; +} + +us::ModuleResource mitk::CloseRegionTool::GetCursorIconResource() const +{ + us::Module *module = us::GetModuleContext()->GetModule(); + us::ModuleResource resource = module->GetResource("Close_Cursor_32x32.png"); + return resource; +} + +const char *mitk::CloseRegionTool::GetName() const +{ + return "Close"; +} + + +template +void DoITKRegionClosing(const itk::Image* oldSegImage, + mitk::Image::Pointer& filledRegionImage, itk::Index seedIndex, mitk::Label::PixelType& seedLabel) +{ + typedef itk::Image InputImageType; + typedef itk::Image OutputImageType; + typedef itk::ConnectedThresholdImageFilter RegionGrowingFilterType; + using FillHoleFilter = itk::BinaryFillholeImageFilter; + + seedLabel = oldSegImage->GetPixel(seedIndex); + + typename OutputImageType::Pointer itkResultImage; + filledRegionImage = nullptr; + + try + { + auto regionGrower = RegionGrowingFilterType::New(); + regionGrower->SetInput(oldSegImage); + regionGrower->SetReplaceValue(1); + regionGrower->AddSeed(seedIndex); + + regionGrower->SetLower(seedLabel); + regionGrower->SetUpper(seedLabel); + + auto filler = FillHoleFilter::New(); + filler->SetInput(regionGrower->GetOutput()); + filler->SetForegroundValue(1); + filler->Update(); + + itkResultImage = filler->GetOutput(); + } + catch (const itk::ExceptionObject&) + { + return; // can't work + } + catch (...) + { + return; + } + mitk::CastToMitkImage(itkResultImage, filledRegionImage); +} + +mitk::Image::Pointer mitk::CloseRegionTool::GenerateFillImage(const Image* workingSlice, Point3D seedPoint, mitk::Label::PixelType& seedLabelValue) const +{ + itk::Index<2> seedIndex; + workingSlice->GetGeometry()->WorldToIndex(seedPoint, seedIndex); + + Image::Pointer fillImage; + + AccessFixedDimensionByItk_n(workingSlice, DoITKRegionClosing, 2, (fillImage, seedIndex, seedLabelValue)); + + auto labelSetImage = dynamic_cast(this->GetWorkingData()); + if (seedLabelValue == labelSetImage->GetExteriorLabel()->GetValue()) + { + return nullptr; + } + + return fillImage; +} + +void mitk::CloseRegionTool::PrepareFilling(const Image* /*workingSlice*/, Point3D /*seedPoint*/) +{ + m_FillLabelValue = m_SeedLabelValue; + m_MergeStyle = MultiLabelSegmentation::MergeStyle::Merge; +}; diff --git a/Modules/Segmentation/Interactions/mitkFillRegionTool.h b/Modules/Segmentation/Interactions/mitkCloseRegionTool.h similarity index 64% copy from Modules/Segmentation/Interactions/mitkFillRegionTool.h copy to Modules/Segmentation/Interactions/mitkCloseRegionTool.h index 3643b13992..1d907a2582 100644 --- a/Modules/Segmentation/Interactions/mitkFillRegionTool.h +++ b/Modules/Segmentation/Interactions/mitkCloseRegionTool.h @@ -1,60 +1,64 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ -#ifndef mitkFillRegionTool_h_Included -#define mitkFillRegionTool_h_Included +#ifndef mitkCloseRegionTool_h_Included +#define mitkCloseRegionTool_h_Included -#include "mitkSetRegionTool.h" +#include "mitkFillRegionBaseTool.h" #include namespace us { class ModuleResource; } namespace mitk { /** - \brief Fill the inside of a contour with the foreground pixel value. + \brief Closes/Fills the inside of a contour with the foreground pixel value. - \sa SetRegionTool + \sa FillRegionBaseTool \ingroup Interactions Finds the outer contour of a shape in 2D (possibly including holes) and sets all the pixels inside to the foreground pixel value (filling holes in a segmentation). If clicked on the background, the outer contour might contain the whole image and thus fill the whole image with the foreground pixel value. \warning Only to be instantiated by mitk::ToolManager. */ - class MITKSEGMENTATION_EXPORT FillRegionTool : public SetRegionTool + class MITKSEGMENTATION_EXPORT CloseRegionTool : public FillRegionBaseTool { public: - mitkClassMacro(FillRegionTool, SetRegionTool); + mitkClassMacro(CloseRegionTool, FillRegionBaseTool); itkFactorylessNewMacro(Self); itkCloneMacro(Self); const char **GetXPM() const override; us::ModuleResource GetCursorIconResource() const override; us::ModuleResource GetIconResource() const override; const char *GetName() const override; protected: - FillRegionTool(); // purposely hidden - ~FillRegionTool() override; + CloseRegionTool() = default; // purposely hidden + ~CloseRegionTool() = default; + + Image::Pointer GenerateFillImage(const Image* workingSlice, Point3D seedPoint, mitk::Label::PixelType& seedLabelValue) const override; + void PrepareFilling(const Image* workingSlice, Point3D seedPoint) override; + }; } // namespace #endif diff --git a/Modules/Segmentation/Interactions/mitkEditableContourTool.cpp b/Modules/Segmentation/Interactions/mitkEditableContourTool.cpp index f25e261373..81db18aa4a 100644 --- a/Modules/Segmentation/Interactions/mitkEditableContourTool.cpp +++ b/Modules/Segmentation/Interactions/mitkEditableContourTool.cpp @@ -1,471 +1,459 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkEditableContourTool.h" #include mitk::EditableContourTool::EditableContourTool() : FeedbackContourTool("EditableContourTool"), m_AutoConfirm(true), m_AddMode(true) {} mitk::EditableContourTool::~EditableContourTool() { this->ReleaseHelperObjects(); this->ReleaseInteractors(); } void mitk::EditableContourTool::ConnectActionsAndFunctions() { CONNECT_FUNCTION("InitObject", OnInitContour); CONNECT_FUNCTION("AddPoint", OnAddPoint); CONNECT_FUNCTION("CtrlAddPoint", OnAddPoint); CONNECT_FUNCTION("Drawing", OnDrawing); CONNECT_FUNCTION("EndDrawing", OnEndDrawing); CONNECT_FUNCTION("FinishContour", OnFinish); CONNECT_FUNCTION("CtrlMovePoint", OnMouseMoved); } void mitk::EditableContourTool::Activated() { Superclass::Activated(); this->ResetToStartState(); this->EnableContourInteraction(true); } void mitk::EditableContourTool::Deactivated() { this->ClearSegmentation(); Superclass::Deactivated(); } void mitk::EditableContourTool::ConfirmSegmentation(bool resetStatMachine) { auto referenceImage = this->GetReferenceData(); auto workingImage = this->GetWorkingData(); if (nullptr != referenceImage && nullptr != workingImage) { std::vector sliceInfos; const auto currentTimePoint = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); TimeStepType workingImageTimeStep = workingImage->GetTimeGeometry()->TimePointToTimeStep(currentTimePoint); auto contour = this->GetContour(); if (nullptr == contour || contour->IsEmpty()) return; auto workingSlice = this->GetAffectedImageSliceAs2DImage(m_PlaneGeometry, workingImage, workingImageTimeStep)->Clone(); sliceInfos.emplace_back(workingSlice, m_PlaneGeometry, workingImageTimeStep); auto projectedContour = ContourModelUtils::ProjectContourTo2DSlice(workingSlice, contour); int activePixelValue = ContourModelUtils::GetActivePixelValue(workingImage); if (!m_AddMode) { activePixelValue = 0; } ContourModelUtils::FillContourInSlice(projectedContour, workingSlice, workingImage, activePixelValue); this->WriteBackSegmentationResults(sliceInfos); } this->ReleaseHelperObjects(); this->ReleaseInteractors(); if (resetStatMachine) this->ResetToStartState(); } void mitk::EditableContourTool::ClearSegmentation() { this->ReleaseHelperObjects(); this->ReleaseInteractors(); this->ResetToStartState(); } bool mitk::EditableContourTool::IsEditingContour() const { return (nullptr != GetContour()) && !this->IsDrawingContour(); }; bool mitk::EditableContourTool::IsDrawingContour() const { return m_PreviewContour.IsNotNull(); }; -bool mitk::EditableContourTool::IsPositionEventInsideImageRegion(mitk::InteractionPositionEvent *positionEvent, - mitk::BaseData *data) -{ - bool isPositionEventInsideImageRegion = - nullptr != data && data->GetGeometry()->IsInside(positionEvent->GetPositionInWorld()); - - if (!isPositionEventInsideImageRegion) - MITK_WARN("EditableContourTool") << "PositionEvent is outside ImageRegion!"; - - return isPositionEventInsideImageRegion; -} - mitk::Point3D mitk::EditableContourTool::PrepareInitContour(const Point3D& clickedPoint) { //default implementation does nothing return clickedPoint; } void mitk::EditableContourTool::OnInitContour(StateMachineAction *, InteractionEvent *interactionEvent) { auto positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) return; auto workingDataNode = this->GetWorkingDataNode(); if (nullptr != this->GetContour()) { this->ConfirmSegmentation(false); } if (!IsPositionEventInsideImageRegion(positionEvent, workingDataNode->GetData())) { this->ResetToStartState(); return; } m_LastEventSender = positionEvent->GetSender(); m_LastEventSlice = m_LastEventSender->GetSlice(); auto contour = this->CreateNewContour(); m_ContourNode = mitk::DataNode::New(); m_ContourNode->SetData(contour); m_ContourNode->SetName("working contour node"); m_ContourNode->SetProperty("layer", IntProperty::New(100)); m_ContourNode->AddProperty("fixedLayer", BoolProperty::New(true)); m_ContourNode->SetProperty("helper object", mitk::BoolProperty::New(true)); m_ContourNode->AddProperty("contour.color", ColorProperty::New(1.0f, 1.0f, 0.0f), nullptr, true); m_ContourNode->AddProperty("contour.points.color", ColorProperty::New(1.0f, 0.0f, 0.1f), nullptr, true); m_ContourNode->AddProperty("contour.controlpoints.show", BoolProperty::New(true), nullptr, true); m_PreviewContour = this->CreateNewContour(); m_PreviewContourNode = mitk::DataNode::New(); m_PreviewContourNode->SetData(m_PreviewContour); m_PreviewContourNode->SetName("active preview node"); m_PreviewContourNode->SetProperty("layer", IntProperty::New(101)); m_PreviewContourNode->AddProperty("fixedLayer", BoolProperty::New(true)); m_PreviewContourNode->SetProperty("helper object", mitk::BoolProperty::New(true)); m_PreviewContourNode->AddProperty("contour.color", ColorProperty::New(0.1f, 1.0f, 0.1f), nullptr, true); m_PreviewContourNode->AddProperty("contour.width", mitk::FloatProperty::New(4.0f), nullptr, true); m_ClosureContour = this->CreateNewContour(); m_ClosureContourNode = mitk::DataNode::New(); m_ClosureContourNode->SetData(m_ClosureContour); m_ClosureContourNode->SetName("active closure node"); m_ClosureContourNode->SetProperty("layer", IntProperty::New(101)); m_ClosureContourNode->AddProperty("fixedLayer", BoolProperty::New(true)); m_ClosureContourNode->SetProperty("helper object", mitk::BoolProperty::New(true)); m_ClosureContourNode->AddProperty("contour.color", ColorProperty::New(0.0f, 1.0f, 0.1f), nullptr, true); m_ClosureContourNode->AddProperty("contour.width", mitk::FloatProperty::New(2.0f), nullptr, true); m_CurrentRestrictedArea = this->CreateNewContour(); auto dataStorage = this->GetToolManager()->GetDataStorage(); dataStorage->Add(m_ContourNode, workingDataNode); dataStorage->Add(m_PreviewContourNode, workingDataNode); dataStorage->Add(m_ClosureContourNode, workingDataNode); m_ReferenceDataSlice = this->GetAffectedReferenceSlice(positionEvent); auto origin = m_ReferenceDataSlice->GetSlicedGeometry()->GetOrigin(); m_ReferenceDataSlice->GetSlicedGeometry()->WorldToIndex(origin, origin); m_ReferenceDataSlice->GetSlicedGeometry()->IndexToWorld(origin, origin); m_ReferenceDataSlice->GetSlicedGeometry()->SetOrigin(origin); // Remember PlaneGeometry to determine if events were triggered in the same plane m_PlaneGeometry = interactionEvent->GetSender()->GetCurrentWorldPlaneGeometry(); // Map click to pixel coordinates auto click = positionEvent->GetPositionInWorld(); click = this->PrepareInitContour(click); this->InitializePreviewContour(click); // Set initial start point contour->AddVertex(click, true); m_PreviewContour->AddVertex(click, false); m_ClosureContour->AddVertex(click); mitk::RenderingManager::GetInstance()->RequestUpdate(positionEvent->GetSender()->GetRenderWindow()); } void mitk::EditableContourTool::FinalizePreviewContour(const Point3D& /*clickedPoint*/) { // Remove duplicate first vertex, it's already contained in m_ContourNode m_PreviewContour->RemoveVertexAt(0); m_PreviewContour->SetControlVertexAt(m_PreviewContour->GetNumberOfVertices() - 1); } void mitk::EditableContourTool::InitializePreviewContour(const Point3D& clickedPoint) { //default implementation only clears the preview and sets the start point m_PreviewContour = this->CreateNewContour(); m_PreviewContour->AddVertex(clickedPoint); m_PreviewContourNode->SetData(m_PreviewContour); } void mitk::EditableContourTool::UpdatePreviewContour(const Point3D& clickedPoint) { //default implementation draws just a simple line to position if (m_PreviewContour->GetNumberOfVertices() > 2) { auto contour = this->GetContour(); this->InitializePreviewContour(contour->GetVertexAt(contour->GetNumberOfVertices() - 1)->Coordinates); } if (m_PreviewContour->GetNumberOfVertices() == 2) { m_PreviewContour->RemoveVertexAt(m_PreviewContour->GetNumberOfVertices()-1); } m_PreviewContour->AddVertex(clickedPoint); } void mitk::EditableContourTool::OnAddPoint(StateMachineAction*, InteractionEvent* interactionEvent) { auto positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) return; if (m_PlaneGeometry.IsNotNull()) { // Check if the point is in the correct slice if (m_PlaneGeometry->DistanceFromPlane(positionEvent->GetPositionInWorld()) > mitk::sqrteps) return; } this->FinalizePreviewContour(positionEvent->GetPositionInWorld()); // Merge contours auto contour = this->GetContour(); contour->Concatenate(m_PreviewContour); this->InitializePreviewContour(positionEvent->GetPositionInWorld()); mitk::RenderingManager::GetInstance()->RequestUpdate(positionEvent->GetSender()->GetRenderWindow()); } void mitk::EditableContourTool::OnDrawing(StateMachineAction*, InteractionEvent* interactionEvent) { auto* positionEvent = dynamic_cast(interactionEvent); if (!positionEvent) return; m_PreviewContourNode->SetVisibility(false); auto contour = this->GetContour(); contour->AddVertex(positionEvent->GetPositionInWorld(), false); UpdateClosureContour(positionEvent->GetPositionInWorld()); assert(positionEvent->GetSender()->GetRenderWindow()); mitk::RenderingManager::GetInstance()->RequestUpdate(positionEvent->GetSender()->GetRenderWindow()); } void mitk::EditableContourTool::OnEndDrawing(StateMachineAction*, InteractionEvent* interactionEvent) { auto* positionEvent = dynamic_cast(interactionEvent); if (!positionEvent) return; auto contour = this->GetContour(); auto controlVs = contour->GetControlVertices(0); if (!controlVs.empty()) { //add the last control point (after that the draw part start) m_CurrentRestrictedArea->AddVertex(controlVs.back()->Coordinates); } m_PreviewContourNode->SetVisibility(true); contour->SetControlVertexAt(contour->GetNumberOfVertices() - 1); //add the just created/set last control point (with it the draw part ends) m_CurrentRestrictedArea->AddVertex(contour->GetVertexAt(contour->GetNumberOfVertices() - 1)->Coordinates); this->InitializePreviewContour(positionEvent->GetPositionInWorld()); mitk::RenderingManager::GetInstance()->RequestUpdate(positionEvent->GetSender()->GetRenderWindow()); } void mitk::EditableContourTool::OnMouseMoved(StateMachineAction*, InteractionEvent* interactionEvent) { auto positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) return; if (m_PlaneGeometry.IsNotNull()) { // Check if the point is in the correct slice if (m_PlaneGeometry->DistanceFromPlane(positionEvent->GetPositionInWorld()) > mitk::sqrteps) return; } this->UpdatePreviewContour(positionEvent->GetPositionInWorld()); this->UpdateClosureContour(positionEvent->GetPositionInWorld()); RenderingManager::GetInstance()->RequestUpdate(positionEvent->GetSender()->GetRenderWindow()); } void mitk::EditableContourTool::OnFinish(StateMachineAction *, InteractionEvent *interactionEvent) { auto positionEvent = dynamic_cast(interactionEvent); if (nullptr == positionEvent) return; if (m_PlaneGeometry.IsNotNull()) { // Check if the point is in the correct slice if (m_PlaneGeometry->DistanceFromPlane(positionEvent->GetPositionInWorld()) > mitk::sqrteps) return; } this->FinalizePreviewContour(positionEvent->GetPositionInWorld()); this->FinishTool(); // Merge contours auto contour = this->GetContour(); contour->Concatenate(m_PreviewContour); auto numberOfTimesteps = static_cast(contour->GetTimeSteps()); for (int i = 0; i <= numberOfTimesteps; ++i) contour->Close(i); this->ReleaseHelperObjects(false); if (m_AutoConfirm) { this->ConfirmSegmentation(); } } void mitk::EditableContourTool::ReleaseHelperObjects(bool includeWorkingContour) { this->RemoveHelperObjectsFromDataStorage(includeWorkingContour); if (includeWorkingContour) { m_ContourNode = nullptr; m_CurrentRestrictedArea = nullptr; } m_PreviewContourNode = nullptr; m_PreviewContour = nullptr; m_ClosureContourNode = nullptr; m_ClosureContour = nullptr; } void mitk::EditableContourTool::RemoveHelperObjectsFromDataStorage(bool includeWorkingContour) { auto dataStorage = this->GetToolManager()->GetDataStorage(); if (nullptr == dataStorage) return; if (includeWorkingContour) { if (m_ContourNode.IsNotNull()) dataStorage->Remove(m_ContourNode); } if (m_PreviewContourNode.IsNotNull()) dataStorage->Remove(m_PreviewContourNode); if (m_ClosureContourNode.IsNotNull()) dataStorage->Remove(m_ClosureContourNode); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } mitk::ContourModel::Pointer mitk::EditableContourTool::CreateNewContour() const { auto workingData = this->GetWorkingData(); if (nullptr == workingData) { this->InteractiveSegmentationBugMessage( "Cannot create new contour. No valid working data is set. Application is in invalid state."); mitkThrow() << "Cannot create new contour. No valid working data is set. Application is in invalid state."; } auto contour = ContourModel::New(); // generate a time geometry that is always visible as the working contour should always be. auto contourTimeGeometry = ProportionalTimeGeometry::New(); contourTimeGeometry->SetStepDuration(std::numeric_limits::max()); contourTimeGeometry->SetTimeStepGeometry(contour->GetTimeGeometry()->GetGeometryForTimeStep(0)->Clone(), 0); contour->SetTimeGeometry(contourTimeGeometry); return contour; } void mitk::EditableContourTool::UpdateClosureContour(mitk::Point3D endpoint) { if (m_ClosureContour->GetNumberOfVertices() > 2) { m_ClosureContour = this->CreateNewContour(); m_ClosureContourNode->SetData(m_ClosureContour); } if (m_ClosureContour->GetNumberOfVertices() == 0) { auto contour = this->GetContour(); m_ClosureContour->AddVertex(contour->GetVertexAt(0)->Coordinates); m_ClosureContour->Update(); } if (m_ClosureContour->GetNumberOfVertices() == 2) { m_ClosureContour->RemoveVertexAt(0); } m_ClosureContour->AddVertexAtFront(endpoint); } void mitk::EditableContourTool::EnableContourInteraction(bool on) { if (m_ContourInteractor.IsNotNull()) { m_ContourInteractor->EnableInteraction(on); } } void mitk::EditableContourTool::ReleaseInteractors() { this->EnableContourInteraction(false); m_ContourInteractor = nullptr; } mitk::ContourModel* mitk::EditableContourTool::GetContour() { if (this->m_ContourNode.IsNotNull()) { return dynamic_cast(this->m_ContourNode->GetData()); } return nullptr; }; const mitk::ContourModel* mitk::EditableContourTool::GetContour() const { if (this->m_ContourNode.IsNotNull()) { return dynamic_cast(this->m_ContourNode->GetData()); } return nullptr; }; \ No newline at end of file diff --git a/Modules/Segmentation/Interactions/mitkEditableContourTool.h b/Modules/Segmentation/Interactions/mitkEditableContourTool.h index 8be7c24ac9..1189e3b406 100644 --- a/Modules/Segmentation/Interactions/mitkEditableContourTool.h +++ b/Modules/Segmentation/Interactions/mitkEditableContourTool.h @@ -1,127 +1,125 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkEditbaleContourTool_h_Included #define mitkEditbaleContourTool_h_Included #include namespace mitk { /** * Base class for lasso like tools that allow to draw closed contours with multiple ancor points. * The segments between the ancor points may be freehand contour segments or computed segments * (e.g. straight lines or live wire). Derive from the class to implement the computation of the non-freehand * segments. * @sa LassoTool LivewWireTool2D */ class MITKSEGMENTATION_EXPORT EditableContourTool : public FeedbackContourTool { public: mitkClassMacro(EditableContourTool, FeedbackContourTool); /// \brief Convert current contour to binary segmentations. virtual void ConfirmSegmentation(bool resetStatMachine = true); /// \brief Delete all current contours. virtual void ClearSegmentation(); itkBooleanMacro(AutoConfirm); itkSetMacro(AutoConfirm, bool); itkGetMacro(AutoConfirm, bool); itkBooleanMacro(AddMode); itkSetMacro(AddMode, bool); itkGetMacro(AddMode, bool); /* Indicated if a contour is drawn, but not confirmed yet. This the tool is in interactor mode to allow users to edit the contour. This state can be reached if AutoConfirm is false, after the finalizing double click before the contour is confirmed.*/ bool IsEditingContour() const; /* Indicate if a contour is currently drawn by the user (state between the initializing double click and the finalizing double click).*/ bool IsDrawingContour() const; protected: EditableContourTool(); ~EditableContourTool() override; void ConnectActionsAndFunctions() override; void Activated() override; void Deactivated() override; virtual Point3D PrepareInitContour(const Point3D& clickedPoint); virtual void FinalizePreviewContour(const Point3D& clickedPoint); virtual void InitializePreviewContour(const Point3D& clickedPoint); virtual void UpdatePreviewContour(const Point3D& clickedPoint); /// \brief Initialize tool. virtual void OnInitContour(StateMachineAction *, InteractionEvent *interactionEvent); /// \brief Add a control point and finish current segment. virtual void OnAddPoint(StateMachineAction *, InteractionEvent *interactionEvent); /// \brief Draw a contour according to the mouse movement when mouse button is pressed and mouse is moved. virtual void OnDrawing(StateMachineAction *, InteractionEvent *interactionEvent); virtual void OnEndDrawing(StateMachineAction *, InteractionEvent *interactionEvent); /// \brief Computation of the preview contour. virtual void OnMouseMoved(StateMachineAction *, InteractionEvent *interactionEvent); /// \brief Finish EditableContour tool. virtual void OnFinish(StateMachineAction *, InteractionEvent *interactionEvent); /// \brief Finish contour interaction. virtual void FinishTool() = 0; void EnableContourInteraction(bool on); void ReleaseInteractors(); virtual void ReleaseHelperObjects(bool includeWorkingContour = true); virtual void RemoveHelperObjectsFromDataStorage(bool includeWorkingContour = true); ContourModel::Pointer CreateNewContour() const; virtual void UpdateClosureContour(mitk::Point3D endpoint); - bool IsPositionEventInsideImageRegion(InteractionPositionEvent *positionEvent, BaseData *data); - mitk::ContourModel* GetContour(); const mitk::ContourModel* GetContour() const; mitk::DataNode::Pointer m_ContourNode; mitk::ContourModel::Pointer m_PreviewContour; mitk::DataNode::Pointer m_PreviewContourNode; mitk::ContourModel::Pointer m_ClosureContour; mitk::DataNode::Pointer m_ClosureContourNode; mitk::ContourModel::Pointer m_CurrentRestrictedArea; /** Slice of the reference data the tool is currently actively working on to define contours.*/ mitk::Image::Pointer m_ReferenceDataSlice; PlaneGeometry::ConstPointer m_PlaneGeometry; mitk::DataInteractor::Pointer m_ContourInteractor; bool m_AutoConfirm; bool m_AddMode; }; } #endif diff --git a/Modules/Segmentation/Interactions/mitkEraseRegionTool.cpp b/Modules/Segmentation/Interactions/mitkEraseRegionTool.cpp index d669014c26..c3003cf49d 100644 --- a/Modules/Segmentation/Interactions/mitkEraseRegionTool.cpp +++ b/Modules/Segmentation/Interactions/mitkEraseRegionTool.cpp @@ -1,59 +1,93 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkEraseRegionTool.h" #include "mitkEraseRegionTool.xpm" +#include +#include +#include // us #include #include #include #include namespace mitk { MITK_TOOL_MACRO(MITKSEGMENTATION_EXPORT, EraseRegionTool, "Erase tool"); } -mitk::EraseRegionTool::EraseRegionTool() : SetRegionTool(0) -{ - FeedbackContourTool::SetFeedbackContourColor(1.0, 1.0, 0.0); -} - -mitk::EraseRegionTool::~EraseRegionTool() -{ -} - const char **mitk::EraseRegionTool::GetXPM() const { return mitkEraseRegionTool_xpm; } us::ModuleResource mitk::EraseRegionTool::GetIconResource() const { us::Module *module = us::GetModuleContext()->GetModule(); us::ModuleResource resource = module->GetResource("Erase.svg"); return resource; } us::ModuleResource mitk::EraseRegionTool::GetCursorIconResource() const { us::Module *module = us::GetModuleContext()->GetModule(); us::ModuleResource resource = module->GetResource("Erase_Cursor.svg"); return resource; } const char *mitk::EraseRegionTool::GetName() const { return "Erase"; } + +template +void DoFillImage(itk::Image* image) +{ + image->FillBuffer(1); +}; + +mitk::Image::Pointer mitk::EraseRegionTool::GenerateFillImage(const Image* workingSlice, Point3D seedPoint, mitk::Label::PixelType& seedLabelValue) const +{ + auto labelSetImage = dynamic_cast(this->GetWorkingData()); + + itk::Index<2> seedIndex; + workingSlice->GetGeometry()->WorldToIndex(seedPoint, seedIndex); + + using AccessorType = ImagePixelReadAccessor; + AccessorType accessor(workingSlice); + seedLabelValue = accessor.GetPixelByIndex(seedIndex); + Image::Pointer fillImage; + + if ( seedLabelValue == labelSetImage->GetExteriorLabel()->GetValue()) + { //clicked on background remove everything which is not locked. + fillImage = workingSlice->Clone(); + AccessByItk(fillImage, DoFillImage); + } + else + { + fillImage = Superclass::GenerateFillImage(workingSlice, seedPoint, seedLabelValue); + } + + return fillImage; +} + +void mitk::EraseRegionTool::PrepareFilling(const Image* /*workingSlice*/, Point3D /*seedPoint*/) +{ + auto labelSetImage = dynamic_cast(this->GetWorkingData()); + if (nullptr != labelSetImage) + { + m_FillLabelValue = labelSetImage->GetExteriorLabel()->GetValue(); + } +}; diff --git a/Modules/Segmentation/Interactions/mitkEraseRegionTool.h b/Modules/Segmentation/Interactions/mitkEraseRegionTool.h index 5316ce5dc1..abeeeb476b 100644 --- a/Modules/Segmentation/Interactions/mitkEraseRegionTool.h +++ b/Modules/Segmentation/Interactions/mitkEraseRegionTool.h @@ -1,61 +1,64 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkEraseRegionTool_h_Included #define mitkEraseRegionTool_h_Included -#include "mitkSetRegionTool.h" +#include "mitkFillRegionBaseTool.h" #include namespace us { class ModuleResource; } namespace mitk { /** \brief Erase the inside of a contour by filling the inside of a contour with the background pixel value. \sa SetRegionTool \ingroup Interactions Finds the outer contour of a shape in 2D (possibly including single patches) and sets all the pixels inside to the background pixel value (erasing a segmentation). If clicked on the background, the outer contour might contain the whole image and thus fill the whole image with the background pixel value. \warning Only to be instantiated by mitk::ToolManager. */ - class MITKSEGMENTATION_EXPORT EraseRegionTool : public SetRegionTool + class MITKSEGMENTATION_EXPORT EraseRegionTool : public FillRegionBaseTool { public: - mitkClassMacro(EraseRegionTool, SetRegionTool); + mitkClassMacro(EraseRegionTool, FillRegionBaseTool); itkFactorylessNewMacro(Self); itkCloneMacro(Self); - const char **GetXPM() const override; + const char **GetXPM() const override; us::ModuleResource GetCursorIconResource() const override; us::ModuleResource GetIconResource() const override; const char *GetName() const override; protected: - EraseRegionTool(); // purposely hidden - ~EraseRegionTool() override; + EraseRegionTool() = default; // purposely hidden + ~EraseRegionTool() = default; + + Image::Pointer GenerateFillImage(const Image* workingSlice, Point3D seedPoint, mitk::Label::PixelType& seedLabelValue) const override; + void PrepareFilling(const Image* workingSlice, Point3D seedPoint) override; }; } // namespace #endif diff --git a/Modules/Segmentation/Interactions/mitkFillRegionBaseTool.cpp b/Modules/Segmentation/Interactions/mitkFillRegionBaseTool.cpp new file mode 100644 index 0000000000..403b705cd7 --- /dev/null +++ b/Modules/Segmentation/Interactions/mitkFillRegionBaseTool.cpp @@ -0,0 +1,149 @@ +/*============================================================================ + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center (DKFZ) +All rights reserved. + +Use of this source code is governed by a 3-clause BSD license that can be +found in the LICENSE file. + +============================================================================*/ + +#include "mitkFillRegionBaseTool.h" +#include "mitkToolManager.h" + +#include "mitkBaseRenderer.h" +#include "mitkDataStorage.h" + +#include "mitkITKImageImport.h" +#include "mitkImageAccessByItk.h" + +#include "mitkRenderingManager.h" + +#include + +mitk::FillRegionBaseTool::FillRegionBaseTool() : SegTool2D("MouseReleaseOnly") +{ +} + +mitk::FillRegionBaseTool::~FillRegionBaseTool() +{ +} + +void mitk::FillRegionBaseTool::ConnectActionsAndFunctions() +{ + CONNECT_FUNCTION("Release", OnClick); +} + + +template +void DoITKRegionGrowing(const itk::Image* oldSegImage, + mitk::Image::Pointer& filledRegionImage, itk::Index seedIndex, mitk::Label::PixelType& seedLabel ) +{ + typedef itk::Image InputImageType; + typedef itk::Image OutputImageType; + typedef itk::ConnectedThresholdImageFilter RegionGrowingFilterType; + + seedLabel = oldSegImage->GetPixel(seedIndex); + + typename OutputImageType::Pointer itkResultImage; + filledRegionImage = nullptr; + + try + { + typename RegionGrowingFilterType::Pointer regionGrower = RegionGrowingFilterType::New(); + regionGrower->SetInput(oldSegImage); + regionGrower->SetReplaceValue(1); + regionGrower->AddSeed(seedIndex); + + regionGrower->SetLower(seedLabel); + regionGrower->SetUpper(seedLabel); + + regionGrower->Update(); + + itkResultImage = regionGrower->GetOutput(); + } + catch (const itk::ExceptionObject&) + { + return; // can't work + } + catch (...) + { + return; + } + mitk::CastToMitkImage(itkResultImage, filledRegionImage); +} + +void mitk::FillRegionBaseTool::OnClick(StateMachineAction*, InteractionEvent* interactionEvent) +{ + auto positionEvent = dynamic_cast(interactionEvent); + if (nullptr == positionEvent) + return; + + auto labelSetImage = dynamic_cast(this->GetWorkingData()); + if (nullptr == labelSetImage) + { + return; + } + + if (!IsPositionEventInsideImageRegion(positionEvent, labelSetImage)) + { + return; + } + + m_LastEventSender = positionEvent->GetSender(); + m_LastEventSlice = m_LastEventSender->GetSlice(); + + auto workingSlice = this->GetAffectedWorkingSlice(positionEvent); + + auto click = positionEvent->GetPositionInWorld(); + + m_SeedLabelValue = 0; + auto fillImage = this->GenerateFillImage(workingSlice, click, m_SeedLabelValue); + + if (fillImage.IsNull()) + { + return; //nothing to fill; + } + + auto label = labelSetImage->GetLabel(m_SeedLabelValue, labelSetImage->GetActiveLayer()); + + if (label->GetLocked() && label->GetValue()!=labelSetImage->GetActiveLabel()->GetValue()) + { + ErrorMessage.Send("Label of selected region is locked. Tool operation has no effect."); + return; + } + + this->PrepareFilling(workingSlice, click); + + //as fill region tools should always allow to manipulate active label + //(that is what the user expects/knows when using tools so far: + //the active label can always be changed even if locked) + //we realize that by cloning the relevant label set and changing the lock state + //this fillLabelSet is used for the transfer. + auto fillLabelSet = labelSetImage->GetActiveLabelSet()->Clone(); + auto activeLabelClone = fillLabelSet->GetLabel(labelSetImage->GetActiveLabel()->GetValue()); + if (nullptr != activeLabelClone) + { + activeLabelClone->SetLocked(false); + } + + TransferLabelContent(fillImage, workingSlice, fillLabelSet, 0, labelSetImage->GetExteriorLabel()->GetValue(), false, { {1, m_FillLabelValue} }, m_MergeStyle); + + this->WriteBackSegmentationResult(positionEvent, workingSlice); + + mitk::RenderingManager::GetInstance()->RequestUpdate(positionEvent->GetSender()->GetRenderWindow()); +} + +mitk::Image::Pointer mitk::FillRegionBaseTool::GenerateFillImage(const Image* workingSlice, Point3D seedPoint, mitk::Label::PixelType& seedLabelValue) const +{ + itk::Index<2> seedIndex; + workingSlice->GetGeometry()->WorldToIndex(seedPoint, seedIndex); + + Image::Pointer fillImage; + + AccessFixedDimensionByItk_n(workingSlice, DoITKRegionGrowing, 2, (fillImage, seedIndex, seedLabelValue)); + + return fillImage; +} diff --git a/Modules/Segmentation/Interactions/mitkFillRegionBaseTool.h b/Modules/Segmentation/Interactions/mitkFillRegionBaseTool.h new file mode 100644 index 0000000000..8235310900 --- /dev/null +++ b/Modules/Segmentation/Interactions/mitkFillRegionBaseTool.h @@ -0,0 +1,83 @@ +/*============================================================================ + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center (DKFZ) +All rights reserved. + +Use of this source code is governed by a 3-clause BSD license that can be +found in the LICENSE file. + +============================================================================*/ + +#ifndef mitkFillRegionBaseTool_h_Included +#define mitkFillRegionBaseTool_h_Included + +#include "mitkCommon.h" +#include "mitkContourModelUtils.h" +#include "mitkContourUtils.h" //TODO remove legacy support +#include "mitkImage.h" +#include "mitkSegTool2D.h" +#include + +#include "mitkDataNode.h" + +#include "mitkImageCast.h" + +namespace mitk +{ + /** + \brief Base class for tools that fill a connected region of a 2D slice + + \sa Tool + + \ingroup Interaction + \ingroup ToolManagerEtAl + + \warning Only to be instantiated by mitk::ToolManager. + + $Author: nolden $ + */ + class MITKSEGMENTATION_EXPORT FillRegionBaseTool : public SegTool2D + { + public: + mitkClassMacro(FillRegionBaseTool, SegTool2D); + + protected: + FillRegionBaseTool(); // purposely hidden + ~FillRegionBaseTool() override; + + void ConnectActionsAndFunctions() override; + + /// \brief Add a control point and finish current segment. + virtual void OnClick(StateMachineAction*, InteractionEvent* interactionEvent); + + /** Function that generates the mask image that indicates which pixels should be filled. + * Caller of this function assumes that all pixels that should be filled have the value 1. + * Pixels that should stay untouched should have the value 0. + * The default implementation marks the connected reagion around seedPoint, that has + * the same pixel value/label like the seedPoint. + * You may reimplement this function to change the strategy to determin the fill region. + * @param workingSlice part of the segmentation image that should be used to determin the fill image. + * @param seedPoint The world coordinate position where the user has cliced. + * @param [out] seedLabelValue The function should return the label value that should be assumed + * as clicked on, given the seedPoint. + * @return Return the image maske that indicates which pixels should be filled. Returning + * a null pointer indicates that there is nothing to fill. + */ + virtual Image::Pointer GenerateFillImage(const Image* workingSlice, Point3D seedPoint, mitk::Label::PixelType& seedLabelValue) const; + + /** Function that is called by OnClick before the filling is executed. If you want to do special + * preperation (e.g. change m_FillLabelValue, you can overwrite this function. */ + virtual void PrepareFilling(const Image* workingSlice, Point3D seedPoint) = 0; + + Label::PixelType m_FillLabelValue = 0; + Label::PixelType m_SeedLabelValue = 0; + + MultiLabelSegmentation::MergeStyle m_MergeStyle = MultiLabelSegmentation::MergeStyle::Replace; + private: + }; + +} // namespace + +#endif diff --git a/Modules/Segmentation/Interactions/mitkFillRegionTool.cpp b/Modules/Segmentation/Interactions/mitkFillRegionTool.cpp index 8fbf7e58ac..bde58bce1a 100644 --- a/Modules/Segmentation/Interactions/mitkFillRegionTool.cpp +++ b/Modules/Segmentation/Interactions/mitkFillRegionTool.cpp @@ -1,58 +1,59 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkFillRegionTool.h" -#include "mitkFillRegionTool.xpm" - // us #include #include #include #include namespace mitk { MITK_TOOL_MACRO(MITKSEGMENTATION_EXPORT, FillRegionTool, "Fill tool"); } -mitk::FillRegionTool::FillRegionTool() : SetRegionTool(1) -{ -} - -mitk::FillRegionTool::~FillRegionTool() -{ -} - const char **mitk::FillRegionTool::GetXPM() const { - return mitkFillRegionTool_xpm; + return nullptr; } us::ModuleResource mitk::FillRegionTool::GetIconResource() const { us::Module *module = us::GetModuleContext()->GetModule(); us::ModuleResource resource = module->GetResource("Fill.svg"); return resource; } us::ModuleResource mitk::FillRegionTool::GetCursorIconResource() const { us::Module *module = us::GetModuleContext()->GetModule(); us::ModuleResource resource = module->GetResource("Fill_Cursor.svg"); return resource; } const char *mitk::FillRegionTool::GetName() const { return "Fill"; } + +void mitk::FillRegionTool::PrepareFilling(const Image* /*workingSlice*/, Point3D /*seedPoint*/) +{ + auto labelSetImage = dynamic_cast(this->GetWorkingData()); + + if (nullptr == labelSetImage) mitkThrow() << "Invalid state of FillRegionTool. Working image is not of correct type."; + + m_FillLabelValue = labelSetImage->GetActiveLabel()->GetValue(); + m_MergeStyle = MultiLabelSegmentation::MergeStyle::Merge; +}; + diff --git a/Modules/Segmentation/Interactions/mitkFillRegionTool.h b/Modules/Segmentation/Interactions/mitkFillRegionTool.h index 3643b13992..e7a1247858 100644 --- a/Modules/Segmentation/Interactions/mitkFillRegionTool.h +++ b/Modules/Segmentation/Interactions/mitkFillRegionTool.h @@ -1,60 +1,62 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkFillRegionTool_h_Included #define mitkFillRegionTool_h_Included -#include "mitkSetRegionTool.h" +#include "mitkFillRegionBaseTool.h" #include namespace us { class ModuleResource; } namespace mitk { /** \brief Fill the inside of a contour with the foreground pixel value. \sa SetRegionTool \ingroup Interactions Finds the outer contour of a shape in 2D (possibly including holes) and sets all the pixels inside to the foreground pixel value (filling holes in a segmentation). If clicked on the background, the outer contour might contain the whole image and thus fill the whole image with the foreground pixel value. \warning Only to be instantiated by mitk::ToolManager. */ - class MITKSEGMENTATION_EXPORT FillRegionTool : public SetRegionTool + class MITKSEGMENTATION_EXPORT FillRegionTool : public FillRegionBaseTool { public: - mitkClassMacro(FillRegionTool, SetRegionTool); + mitkClassMacro(FillRegionTool, FillRegionBaseTool); itkFactorylessNewMacro(Self); itkCloneMacro(Self); - const char **GetXPM() const override; + const char **GetXPM() const override; us::ModuleResource GetCursorIconResource() const override; us::ModuleResource GetIconResource() const override; const char *GetName() const override; protected: - FillRegionTool(); // purposely hidden - ~FillRegionTool() override; + void PrepareFilling(const Image* workingSlice, Point3D seedPoint) override; + + FillRegionTool() = default; // purposely hidden + ~FillRegionTool() = default; }; } // namespace #endif diff --git a/Modules/Segmentation/Interactions/mitkPickingTool.cpp b/Modules/Segmentation/Interactions/mitkPickingTool.cpp index a00b6962c5..caccce9710 100644 --- a/Modules/Segmentation/Interactions/mitkPickingTool.cpp +++ b/Modules/Segmentation/Interactions/mitkPickingTool.cpp @@ -1,276 +1,275 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkPickingTool.h" #include "mitkProperties.h" #include "mitkToolManager.h" #include "mitkInteractionPositionEvent.h" // us #include #include #include #include #include "mitkITKImageImport.h" #include "mitkImageAccessByItk.h" #include "mitkImageCast.h" #include "mitkImageTimeSelector.h" -#include "mitkImageTimeSelector.h" #include #include #include #include namespace mitk { MITK_TOOL_MACRO(MITKSEGMENTATION_EXPORT, PickingTool, "PickingTool"); } mitk::PickingTool::PickingTool() : SegWithPreviewTool(false, "PressMoveReleaseAndPointSetting") { this->ResetsToEmptyPreviewOn(); } mitk::PickingTool::~PickingTool() { } bool mitk::PickingTool::CanHandle(const BaseData* referenceData, const BaseData* workingData) const { if (!Superclass::CanHandle(referenceData,workingData)) return false; auto* image = dynamic_cast(referenceData); if (image == nullptr) return false; return true; } const char **mitk::PickingTool::GetXPM() const { return nullptr; } const char *mitk::PickingTool::GetName() const { return "Picking"; } us::ModuleResource mitk::PickingTool::GetIconResource() const { us::Module *module = us::GetModuleContext()->GetModule(); us::ModuleResource resource = module->GetResource("Picking.svg"); return resource; } void mitk::PickingTool::Activated() { Superclass::Activated(); m_PointSet = mitk::PointSet::New(); //ensure that the seed points are visible for all timepoints. dynamic_cast(m_PointSet->GetTimeGeometry())->SetStepDuration(std::numeric_limits::max()); m_PointSetNode = mitk::DataNode::New(); m_PointSetNode->SetData(m_PointSet); m_PointSetNode->SetName(std::string(this->GetName()) + "_PointSet"); m_PointSetNode->SetBoolProperty("helper object", true); m_PointSetNode->SetColor(0.0, 1.0, 0.0); m_PointSetNode->SetVisibility(true); this->GetDataStorage()->Add(m_PointSetNode, this->GetToolManager()->GetWorkingData(0)); } void mitk::PickingTool::Deactivated() { this->ClearSeeds(); // remove from data storage and disable interaction GetDataStorage()->Remove(m_PointSetNode); m_PointSetNode = nullptr; m_PointSet = nullptr; Superclass::Deactivated(); } void mitk::PickingTool::ConnectActionsAndFunctions() { CONNECT_FUNCTION("ShiftSecondaryButtonPressed", OnAddPoint); CONNECT_FUNCTION("ShiftPrimaryButtonPressed", OnAddPoint); CONNECT_FUNCTION("DeletePoint", OnDelete); } void mitk::PickingTool::OnAddPoint(StateMachineAction*, InteractionEvent* interactionEvent) { if (!this->IsUpdating() && m_PointSet.IsNotNull()) { const auto positionEvent = dynamic_cast(interactionEvent); if (positionEvent != nullptr) { m_PointSet->InsertPoint(m_PointSet->GetSize(), positionEvent->GetPositionInWorld()); this->UpdatePreview(); } } } void mitk::PickingTool::OnDelete(StateMachineAction*, InteractionEvent* /*interactionEvent*/) { if (!this->IsUpdating() && m_PointSet.IsNotNull()) { // delete last seed point if (this->m_PointSet->GetSize() > 0) { m_PointSet->RemovePointAtEnd(0); this->UpdatePreview(); } } } void mitk::PickingTool::ClearPicks() { this->ClearSeeds(); this->UpdatePreview(); } bool mitk::PickingTool::HasPicks() const { return this->m_PointSet.IsNotNull() && this->m_PointSet->GetSize()>0; } void mitk::PickingTool::ClearSeeds() { if (this->m_PointSet.IsNotNull()) { // renew pointset this->m_PointSet = mitk::PointSet::New(); //ensure that the seed points are visible for all timepoints. dynamic_cast(m_PointSet->GetTimeGeometry())->SetStepDuration(std::numeric_limits::max()); this->m_PointSetNode->SetData(this->m_PointSet); } } template void DoITKRegionGrowing(const itk::Image* oldSegImage, mitk::Image* segmentation, const mitk::PointSet* seedPoints, unsigned int timeStep, const mitk::BaseGeometry* inputGeometry, const mitk::Label::PixelType outputValue, const mitk::Label::PixelType backgroundValue, bool& emptyTimeStep) { typedef itk::Image InputImageType; typedef itk::Image OutputImageType; typedef typename InputImageType::IndexType IndexType; typedef itk::ConnectedThresholdImageFilter RegionGrowingFilterType; using IndexMapType = std::map < mitk::Label::PixelType, std::vector >; IndexMapType indexMap; // convert world coordinates to image indices for (auto pos = seedPoints->Begin(); pos != seedPoints->End(); ++pos) { IndexType seedIndex; inputGeometry->WorldToIndex(pos->Value(), seedIndex); const auto selectedLabel = oldSegImage->GetPixel(seedIndex); if (selectedLabel != backgroundValue) { indexMap[selectedLabel].push_back(seedIndex); } } typename OutputImageType::Pointer itkResultImage; try { bool first = true; typename RegionGrowingFilterType::Pointer regionGrower = RegionGrowingFilterType::New(); regionGrower->SetInput(oldSegImage); regionGrower->SetReplaceValue(outputValue); for (const auto& [label, indeces] : indexMap) { // perform region growing in desired segmented region regionGrower->ClearSeeds(); for (const auto& index : indeces) { regionGrower->AddSeed(index); } regionGrower->SetLower(label); regionGrower->SetUpper(label); regionGrower->Update(); if (first) { itkResultImage = regionGrower->GetOutput(); } else { typename itk::OrImageFilter::Pointer orFilter = itk::OrImageFilter::New(); orFilter->SetInput1(regionGrower->GetOutput()); orFilter->SetInput2(itkResultImage); orFilter->Update(); itkResultImage = orFilter->GetOutput(); } first = false; itkResultImage->DisconnectPipeline(); } } catch (const itk::ExceptionObject&) { return; // can't work } catch (...) { return; } if (itkResultImage.IsNotNull()) { segmentation->SetVolume((void*)(itkResultImage->GetPixelContainer()->GetBufferPointer()),timeStep); } emptyTimeStep = itkResultImage.IsNull(); } void mitk::PickingTool::DoUpdatePreview(const Image* /*inputAtTimeStep*/, const Image* oldSegAtTimeStep, LabelSetImage* previewImage, TimeStepType timeStep) { if (nullptr != oldSegAtTimeStep && nullptr != previewImage && m_PointSet.IsNotNull()) { bool emptyTimeStep = true; if (this->HasPicks()) { Label::PixelType backgroundValue = 0; auto labelSetImage = dynamic_cast(oldSegAtTimeStep); if (nullptr != labelSetImage) { backgroundValue = labelSetImage->GetExteriorLabel()->GetValue(); } AccessFixedDimensionByItk_n(oldSegAtTimeStep, DoITKRegionGrowing, 3, (previewImage, this->m_PointSet, timeStep, oldSegAtTimeStep->GetGeometry(), this->GetUserDefinedActiveLabel(), backgroundValue, emptyTimeStep)); } if (emptyTimeStep) { this->ResetPreviewContentAtTimeStep(timeStep); } } } diff --git a/Modules/Segmentation/Interactions/mitkSegTool2D.cpp b/Modules/Segmentation/Interactions/mitkSegTool2D.cpp index ca9a769dfd..80f4bcba3a 100644 --- a/Modules/Segmentation/Interactions/mitkSegTool2D.cpp +++ b/Modules/Segmentation/Interactions/mitkSegTool2D.cpp @@ -1,757 +1,769 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "mitkSegTool2D.h" #include "mitkToolManager.h" #include "mitkBaseRenderer.h" #include "mitkDataStorage.h" #include "mitkPlaneGeometry.h" // Include of the new ImageExtractor #include "mitkMorphologicalOperations.h" #include "mitkPlanarCircle.h" #include "usGetModuleContext.h" // Includes for 3DSurfaceInterpolation #include "mitkImageTimeSelector.h" #include "mitkImageToContourFilter.h" #include "mitkSurfaceInterpolationController.h" // includes for resling and overwriting #include #include #include #include #include "mitkOperationEvent.h" #include "mitkUndoController.h" #include #include "mitkAbstractTransformGeometry.h" #include "mitkLabelSetImage.h" #include "mitkContourModelUtils.h" #include "itkImageRegionIterator.h" #define ROUND(a) ((a) > 0 ? (int)((a) + 0.5) : -(int)(0.5 - (a))) bool mitk::SegTool2D::m_SurfaceInterpolationEnabled = true; mitk::SegTool2D::SliceInformation::SliceInformation(const mitk::Image* aSlice, const mitk::PlaneGeometry* aPlane, mitk::TimeStepType aTimestep) : slice(aSlice), plane(aPlane), timestep(aTimestep) { } mitk::SegTool2D::SegTool2D(const char *type, const us::Module *interactorModule) : Tool(type, interactorModule), m_Contourmarkername("Position") { Tool::m_EventConfig = "DisplayConfigBlockLMB.xml"; } mitk::SegTool2D::~SegTool2D() { } bool mitk::SegTool2D::FilterEvents(InteractionEvent *interactionEvent, DataNode *) { const auto *positionEvent = dynamic_cast(interactionEvent); bool isValidEvent = (positionEvent && // Only events of type mitk::InteractionPositionEvent interactionEvent->GetSender()->GetMapperID() == BaseRenderer::Standard2D // Only events from the 2D renderwindows ); return isValidEvent; } bool mitk::SegTool2D::DetermineAffectedImageSlice(const Image *image, const PlaneGeometry *plane, int &affectedDimension, int &affectedSlice) { assert(image); assert(plane); // compare normal of plane to the three axis vectors of the image Vector3D normal = plane->GetNormal(); Vector3D imageNormal0 = image->GetSlicedGeometry()->GetAxisVector(0); Vector3D imageNormal1 = image->GetSlicedGeometry()->GetAxisVector(1); Vector3D imageNormal2 = image->GetSlicedGeometry()->GetAxisVector(2); normal.Normalize(); imageNormal0.Normalize(); imageNormal1.Normalize(); imageNormal2.Normalize(); imageNormal0.SetVnlVector(vnl_cross_3d(normal.GetVnlVector(), imageNormal0.GetVnlVector())); imageNormal1.SetVnlVector(vnl_cross_3d(normal.GetVnlVector(), imageNormal1.GetVnlVector())); imageNormal2.SetVnlVector(vnl_cross_3d(normal.GetVnlVector(), imageNormal2.GetVnlVector())); double eps(0.00001); // axial if (imageNormal2.GetNorm() <= eps) { affectedDimension = 2; } // sagittal else if (imageNormal1.GetNorm() <= eps) { affectedDimension = 1; } // coronal else if (imageNormal0.GetNorm() <= eps) { affectedDimension = 0; } else { affectedDimension = -1; // no idea return false; } // determine slice number in image BaseGeometry *imageGeometry = image->GetGeometry(0); Point3D testPoint = imageGeometry->GetCenter(); Point3D projectedPoint; plane->Project(testPoint, projectedPoint); Point3D indexPoint; imageGeometry->WorldToIndex(projectedPoint, indexPoint); affectedSlice = ROUND(indexPoint[affectedDimension]); MITK_DEBUG << "indexPoint " << indexPoint << " affectedDimension " << affectedDimension << " affectedSlice " << affectedSlice; // check if this index is still within the image if (affectedSlice < 0 || affectedSlice >= static_cast(image->GetDimension(affectedDimension))) return false; return true; } void mitk::SegTool2D::UpdateSurfaceInterpolation(const Image *slice, const Image *workingImage, const PlaneGeometry *plane, bool detectIntersection) { std::vector slices = { SliceInformation(slice, plane, 0)}; Self::UpdateSurfaceInterpolation(slices, workingImage, detectIntersection); } void mitk::SegTool2D::RemoveContourFromInterpolator(const SliceInformation& sliceInfo) { mitk::SurfaceInterpolationController::ContourPositionInformation contourInfo; contourInfo.contourNormal = sliceInfo.plane->GetNormal(); contourInfo.contourPoint = sliceInfo.plane->GetOrigin(); mitk::SurfaceInterpolationController::GetInstance()->RemoveContour(contourInfo); } void mitk::SegTool2D::UpdateSurfaceInterpolation(const std::vector& sliceInfos, const Image* workingImage, bool detectIntersection) { if (!m_SurfaceInterpolationEnabled) return; //Remark: the ImageTimeSelector is just needed to extract a timestep/channel of //the image in order to get the image dimension (time dimension and channel dimension //stripped away). Therfore it is OK to always use time step 0 and channel 0 mitk::ImageTimeSelector::Pointer timeSelector = mitk::ImageTimeSelector::New(); timeSelector->SetInput(workingImage); timeSelector->SetTimeNr(0); timeSelector->SetChannelNr(0); timeSelector->Update(); const auto dimRefImg = timeSelector->GetOutput()->GetDimension(); if (dimRefImg != 3) return; std::vector contourList; contourList.reserve(sliceInfos.size()); ImageToContourFilter::Pointer contourExtractor = ImageToContourFilter::New(); std::vector relevantSlices = sliceInfos; if (detectIntersection) { relevantSlices.clear(); for (const auto& sliceInfo : sliceInfos) { // Test whether there is something to extract or whether the slice just contains intersections of others mitk::Image::Pointer slice2 = sliceInfo.slice->Clone(); mitk::MorphologicalOperations::Erode(slice2, 2, mitk::MorphologicalOperations::Ball); contourExtractor->SetInput(slice2); contourExtractor->Update(); mitk::Surface::Pointer contour = contourExtractor->GetOutput(); if (contour->GetVtkPolyData()->GetNumberOfPoints() == 0) { Self::RemoveContourFromInterpolator(sliceInfo); } else { relevantSlices.push_back(sliceInfo); } } } if (relevantSlices.empty()) return; for (const auto& sliceInfo : relevantSlices) { contourExtractor->SetInput(sliceInfo.slice); contourExtractor->Update(); mitk::Surface::Pointer contour = contourExtractor->GetOutput(); if (contour->GetVtkPolyData()->GetNumberOfPoints() == 0) { Self::RemoveContourFromInterpolator(sliceInfo); } else { contour->DisconnectPipeline(); contourList.push_back(contour); } } mitk::SurfaceInterpolationController::GetInstance()->AddNewContours(contourList); } mitk::Image::Pointer mitk::SegTool2D::GetAffectedImageSliceAs2DImage(const InteractionPositionEvent *positionEvent, const Image *image, unsigned int component /*= 0*/) { if (!positionEvent) { return nullptr; } assert(positionEvent->GetSender()); // sure, right? const auto timeStep = positionEvent->GetSender()->GetTimeStep(image); // get the timestep of the visible part (time-wise) of the image return GetAffectedImageSliceAs2DImage(positionEvent->GetSender()->GetCurrentWorldPlaneGeometry(), image, timeStep, component); } mitk::Image::Pointer mitk::SegTool2D::GetAffectedImageSliceAs2DImageByTimePoint(const PlaneGeometry* planeGeometry, const Image* image, TimePointType timePoint, unsigned int component /*= 0*/) { if (!image || !planeGeometry) { return nullptr; } if (!image->GetTimeGeometry()->IsValidTimePoint(timePoint)) return nullptr; return SegTool2D::GetAffectedImageSliceAs2DImage(planeGeometry, image, image->GetTimeGeometry()->TimePointToTimeStep(timePoint), component); } mitk::Image::Pointer mitk::SegTool2D::GetAffectedImageSliceAs2DImage(const PlaneGeometry *planeGeometry, const Image *image, TimeStepType timeStep, unsigned int component /*= 0*/) { if (!image || !planeGeometry) { return nullptr; } // Make sure that for reslicing and overwriting the same alogrithm is used. We can specify the mode of the vtk reslicer vtkSmartPointer reslice = vtkSmartPointer::New(); // set to false to extract a slice reslice->SetOverwriteMode(false); reslice->Modified(); // use ExtractSliceFilter with our specific vtkImageReslice for overwriting and extracting mitk::ExtractSliceFilter::Pointer extractor = mitk::ExtractSliceFilter::New(reslice); extractor->SetInput(image); extractor->SetTimeStep(timeStep); extractor->SetWorldGeometry(planeGeometry); extractor->SetVtkOutputRequest(false); extractor->SetResliceTransformByGeometry(image->GetTimeGeometry()->GetGeometryForTimeStep(timeStep)); // additionally extract the given component // default is 0; the extractor checks for multi-component images extractor->SetComponent(component); extractor->Modified(); extractor->Update(); Image::Pointer slice = extractor->GetOutput(); return slice; } mitk::Image::Pointer mitk::SegTool2D::GetAffectedWorkingSlice(const InteractionPositionEvent *positionEvent) const { const auto workingNode = this->GetWorkingDataNode(); if (!workingNode) { return nullptr; } const auto *workingImage = dynamic_cast(workingNode->GetData()); if (!workingImage) { return nullptr; } return GetAffectedImageSliceAs2DImage(positionEvent, workingImage); } mitk::Image::Pointer mitk::SegTool2D::GetAffectedReferenceSlice(const InteractionPositionEvent *positionEvent) const { DataNode* referenceNode = this->GetReferenceDataNode(); if (!referenceNode) { return nullptr; } auto *referenceImage = dynamic_cast(referenceNode->GetData()); if (!referenceImage) { return nullptr; } int displayedComponent = 0; if (referenceNode->GetIntProperty("Image.Displayed Component", displayedComponent)) { // found the displayed component return GetAffectedImageSliceAs2DImage(positionEvent, referenceImage, displayedComponent); } else { return GetAffectedImageSliceAs2DImage(positionEvent, referenceImage); } } mitk::Image::Pointer mitk::SegTool2D::GetAffectedReferenceSlice(const PlaneGeometry* planeGeometry, TimeStepType timeStep) const { DataNode* referenceNode = this->GetReferenceDataNode(); if (!referenceNode) { return nullptr; } auto* referenceImage = dynamic_cast(referenceNode->GetData()); if (!referenceImage) { return nullptr; } int displayedComponent = 0; if (referenceNode->GetIntProperty("Image.Displayed Component", displayedComponent)) { // found the displayed component return GetAffectedImageSliceAs2DImage(planeGeometry, referenceImage, timeStep, displayedComponent); } else { return GetAffectedImageSliceAs2DImage(planeGeometry, referenceImage, timeStep); } } void mitk::SegTool2D::Activated() { Superclass::Activated(); this->GetToolManager()->SelectedTimePointChanged += mitk::MessageDelegate(this, &mitk::SegTool2D::OnTimePointChangedInternal); m_LastTimePointTriggered = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); } void mitk::SegTool2D::Deactivated() { this->GetToolManager()->SelectedTimePointChanged -= mitk::MessageDelegate(this, &mitk::SegTool2D::OnTimePointChangedInternal); Superclass::Deactivated(); } void mitk::SegTool2D::OnTimePointChangedInternal() { if (m_IsTimePointChangeAware && nullptr != this->GetWorkingDataNode()) { const auto timePoint = mitk::RenderingManager::GetInstance()->GetTimeNavigationController()->GetSelectedTimePoint(); if (timePoint != m_LastTimePointTriggered) { m_LastTimePointTriggered = timePoint; this->OnTimePointChanged(); } } } void mitk::SegTool2D::OnTimePointChanged() { //default implementation does nothing } mitk::DataNode* mitk::SegTool2D::GetWorkingDataNode() const { if (nullptr != this->GetToolManager()) { return this->GetToolManager()->GetWorkingData(0); } return nullptr; } mitk::Image* mitk::SegTool2D::GetWorkingData() const { auto node = this->GetWorkingDataNode(); if (nullptr != node) { return dynamic_cast(node->GetData()); } return nullptr; } mitk::DataNode* mitk::SegTool2D::GetReferenceDataNode() const { if (nullptr != this->GetToolManager()) { return this->GetToolManager()->GetReferenceData(0); } return nullptr; } mitk::Image* mitk::SegTool2D::GetReferenceData() const { auto node = this->GetReferenceDataNode(); if (nullptr != node) { return dynamic_cast(node->GetData()); } return nullptr; } void mitk::SegTool2D::WriteBackSegmentationResult(const InteractionPositionEvent *positionEvent, const Image * segmentationResult) { if (!positionEvent) return; const PlaneGeometry *planeGeometry((positionEvent->GetSender()->GetCurrentWorldPlaneGeometry())); const auto *abstractTransformGeometry( dynamic_cast(positionEvent->GetSender()->GetCurrentWorldPlaneGeometry())); if (planeGeometry && segmentationResult && !abstractTransformGeometry) { const auto workingNode = this->GetWorkingDataNode(); auto *image = dynamic_cast(workingNode->GetData()); const auto timeStep = positionEvent->GetSender()->GetTimeStep(image); this->WriteBackSegmentationResult(planeGeometry, segmentationResult, timeStep); } } void mitk::SegTool2D::WriteBackSegmentationResult(const DataNode* workingNode, const PlaneGeometry* planeGeometry, const Image* segmentationResult, TimeStepType timeStep) { if (!planeGeometry || !segmentationResult) return; SliceInformation sliceInfo(segmentationResult, const_cast(planeGeometry), timeStep); Self::WriteBackSegmentationResults(workingNode, { sliceInfo }, true); } void mitk::SegTool2D::WriteBackSegmentationResult(const PlaneGeometry *planeGeometry, const Image * segmentationResult, TimeStepType timeStep) { if (!planeGeometry || !segmentationResult) return; SliceInformation sliceInfo(segmentationResult, const_cast(planeGeometry), timeStep); WriteBackSegmentationResults({ sliceInfo }, true); } void mitk::SegTool2D::WriteBackSegmentationResults(const std::vector &sliceList, bool writeSliceToVolume) { if (sliceList.empty()) { return; } if (nullptr == m_LastEventSender) { MITK_WARN << "Cannot write tool results. Tool seems to be in an invalid state, as no interaction event was recieved but is expected."; return; } const auto workingNode = this->GetWorkingDataNode(); mitk::SegTool2D::WriteBackSegmentationResults(workingNode, sliceList, writeSliceToVolume); // the first geometry is needed otherwise restoring the position is not working const auto* plane3 = dynamic_cast(dynamic_cast( m_LastEventSender->GetSliceNavigationController()->GetCurrentGeometry3D()) ->GetPlaneGeometry(0)); unsigned int slicePosition = m_LastEventSender->GetSliceNavigationController()->GetSlice()->GetPos(); /* A cleaner solution would be to add a contour marker for each slice info. It currently does not work as the contour markers expect that the plane is always the plane of slice 0. Had not the time to do it properly no. Should be solved by T28146*/ this->AddContourmarker(plane3, slicePosition); } void mitk::SegTool2D::WriteBackSegmentationResults(const DataNode* workingNode, const std::vector& sliceList, bool writeSliceToVolume) { if (sliceList.empty()) { return; } if (nullptr == workingNode) { mitkThrow() << "Cannot write slice to working node. Working node is invalid."; } auto* image = dynamic_cast(workingNode->GetData()); if (nullptr == image) { mitkThrow() << "Cannot write slice to working node. Working node does not contain an image."; } for (const auto& sliceInfo : sliceList) { if (writeSliceToVolume && nullptr != sliceInfo.plane && sliceInfo.slice.IsNotNull()) { mitk::SegTool2D::WriteSliceToVolume(image, sliceInfo, true); } } mitk::SegTool2D::UpdateSurfaceInterpolation(sliceList, image, false); // also mark its node as modified (T27308). Can be removed if T27307 // is properly solved if (workingNode != nullptr) workingNode->Modified(); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void mitk::SegTool2D::WriteSliceToVolume(Image* workingImage, const PlaneGeometry* planeGeometry, const Image* slice, TimeStepType timeStep, bool allowUndo) { SliceInformation sliceInfo(slice, planeGeometry, timeStep); WriteSliceToVolume(workingImage, sliceInfo , allowUndo); } void mitk::SegTool2D::WriteSliceToVolume(Image* workingImage, const SliceInformation &sliceInfo, bool allowUndo) { if (nullptr == workingImage) { mitkThrow() << "Cannot write slice to working node. Working node does not contain an image."; } DiffSliceOperation* undoOperation = nullptr; if (allowUndo) { /*============= BEGIN undo/redo feature block ========================*/ // Create undo operation by caching the not yet modified slices mitk::Image::Pointer originalSlice = GetAffectedImageSliceAs2DImage(sliceInfo.plane, workingImage, sliceInfo.timestep); undoOperation = new DiffSliceOperation(workingImage, originalSlice, dynamic_cast(originalSlice->GetGeometry()), sliceInfo.timestep, sliceInfo.plane); /*============= END undo/redo feature block ========================*/ } // Make sure that for reslicing and overwriting the same alogrithm is used. We can specify the mode of the vtk // reslicer vtkSmartPointer reslice = vtkSmartPointer::New(); // Set the slice as 'input' // casting const away is needed and OK as long the OverwriteMode of // mitkVTKImageOverwrite is true. // Reason: because then the input slice is not touched but // used to overwrite the input of the ExtractSliceFilter. auto noneConstSlice = const_cast(sliceInfo.slice.GetPointer()); reslice->SetInputSlice(noneConstSlice->GetVtkImageData()); // set overwrite mode to true to write back to the image volume reslice->SetOverwriteMode(true); reslice->Modified(); mitk::ExtractSliceFilter::Pointer extractor = mitk::ExtractSliceFilter::New(reslice); extractor->SetInput(workingImage); extractor->SetTimeStep(sliceInfo.timestep); extractor->SetWorldGeometry(sliceInfo.plane); extractor->SetVtkOutputRequest(false); extractor->SetResliceTransformByGeometry(workingImage->GetGeometry(sliceInfo.timestep)); extractor->Modified(); extractor->Update(); // the image was modified within the pipeline, but not marked so workingImage->Modified(); workingImage->GetVtkImageData()->Modified(); if (allowUndo) { /*============= BEGIN undo/redo feature block ========================*/ // specify the redo operation with the edited slice auto* doOperation = new DiffSliceOperation(workingImage, extractor->GetOutput(), dynamic_cast(sliceInfo.slice->GetGeometry()), sliceInfo.timestep, sliceInfo.plane); // create an operation event for the undo stack OperationEvent* undoStackItem = new OperationEvent(DiffSliceOperationApplier::GetInstance(), doOperation, undoOperation, "Segmentation"); // add it to the undo controller UndoStackItem::IncCurrObjectEventId(); UndoStackItem::IncCurrGroupEventId(); UndoController::GetCurrentUndoModel()->SetOperationEvent(undoStackItem); /*============= END undo/redo feature block ========================*/ } } void mitk::SegTool2D::SetShowMarkerNodes(bool status) { m_ShowMarkerNodes = status; } void mitk::SegTool2D::SetEnable3DInterpolation(bool enabled) { m_SurfaceInterpolationEnabled = enabled; } int mitk::SegTool2D::AddContourmarker(const PlaneGeometry* planeGeometry, unsigned int sliceIndex) { if (planeGeometry == nullptr) return -1; us::ServiceReference serviceRef = us::GetModuleContext()->GetServiceReference(); PlanePositionManagerService *service = us::GetModuleContext()->GetService(serviceRef); unsigned int size = service->GetNumberOfPlanePositions(); unsigned int id = service->AddNewPlanePosition(planeGeometry, sliceIndex); mitk::PlanarCircle::Pointer contourMarker = mitk::PlanarCircle::New(); mitk::Point2D p1; planeGeometry->Map(planeGeometry->GetCenter(), p1); mitk::Point2D p2 = p1; p2[0] -= planeGeometry->GetSpacing()[0]; p2[1] -= planeGeometry->GetSpacing()[1]; contourMarker->PlaceFigure(p1); contourMarker->SetCurrentControlPoint(p1); contourMarker->SetPlaneGeometry(planeGeometry->Clone()); std::stringstream markerStream; auto workingNode = this->GetWorkingDataNode(); markerStream << m_Contourmarkername; markerStream << " "; markerStream << id + 1; DataNode::Pointer rotatedContourNode = DataNode::New(); rotatedContourNode->SetData(contourMarker); rotatedContourNode->SetProperty("name", StringProperty::New(markerStream.str())); rotatedContourNode->SetProperty("isContourMarker", BoolProperty::New(true)); rotatedContourNode->SetBoolProperty("PlanarFigureInitializedWindow", true, m_LastEventSender); rotatedContourNode->SetProperty("includeInBoundingBox", BoolProperty::New(false)); rotatedContourNode->SetProperty("helper object", mitk::BoolProperty::New(!m_ShowMarkerNodes)); rotatedContourNode->SetProperty("planarfigure.drawcontrolpoints", BoolProperty::New(false)); rotatedContourNode->SetProperty("planarfigure.drawname", BoolProperty::New(false)); rotatedContourNode->SetProperty("planarfigure.drawoutline", BoolProperty::New(false)); rotatedContourNode->SetProperty("planarfigure.drawshadow", BoolProperty::New(false)); if (planeGeometry) { if (id == size) { this->GetToolManager()->GetDataStorage()->Add(rotatedContourNode, workingNode); } else { mitk::NodePredicateProperty::Pointer isMarker = mitk::NodePredicateProperty::New("isContourMarker", mitk::BoolProperty::New(true)); mitk::DataStorage::SetOfObjects::ConstPointer markers = this->GetToolManager()->GetDataStorage()->GetDerivations(workingNode, isMarker); for (auto iter = markers->begin(); iter != markers->end(); ++iter) { std::string nodeName = (*iter)->GetName(); unsigned int t = nodeName.find_last_of(" "); unsigned int markerId = atof(nodeName.substr(t + 1).c_str()) - 1; if (id == markerId) { return id; } } this->GetToolManager()->GetDataStorage()->Add(rotatedContourNode, workingNode); } } return id; } void mitk::SegTool2D::InteractiveSegmentationBugMessage(const std::string &message) const { MITK_ERROR << "********************************************************************************" << std::endl << " " << message << std::endl << "********************************************************************************" << std::endl << " " << std::endl << " If your image is rotated or the 2D views don't really contain the patient image, try to press the " "button next to the image selection. " << std::endl << " " << std::endl << " Please file a BUG REPORT: " << std::endl << " https://phabricator.mitk.org/" << std::endl << " Contain the following information:" << std::endl << " - What image were you working on?" << std::endl << " - Which region of the image?" << std::endl << " - Which tool did you use?" << std::endl << " - What did you do?" << std::endl << " - What happened (not)? What did you expect?" << std::endl; } void mitk::SegTool2D::WritePreviewOnWorkingImage( Image *targetSlice, const Image *sourceSlice, const Image *workingImage, int paintingPixelValue) { if (nullptr == targetSlice) { mitkThrow() << "Cannot write preview on working image. Target slice does not point to a valid instance."; } if (nullptr == sourceSlice) { mitkThrow() << "Cannot write preview on working image. Source slice does not point to a valid instance."; } if (nullptr == workingImage) { mitkThrow() << "Cannot write preview on working image. Working image does not point to a valid instance."; } auto constVtkSource = sourceSlice->GetVtkImageData(); /*Need to const cast because Vtk interface does not support const correctly. (or I am not experienced enough to use it correctly)*/ auto nonConstVtkSource = const_cast(constVtkSource); ContourModelUtils::FillSliceInSlice(nonConstVtkSource, targetSlice->GetVtkImageData(), workingImage, paintingPixelValue, 1.0); } + +bool mitk::SegTool2D::IsPositionEventInsideImageRegion(mitk::InteractionPositionEvent* positionEvent, + const mitk::BaseData* data) +{ + bool isPositionEventInsideImageRegion = + nullptr != data && data->GetGeometry()->IsInside(positionEvent->GetPositionInWorld()); + + if (!isPositionEventInsideImageRegion) + MITK_WARN("EditableContourTool") << "PositionEvent is outside ImageRegion!"; + + return isPositionEventInsideImageRegion; +} diff --git a/Modules/Segmentation/Interactions/mitkSegTool2D.h b/Modules/Segmentation/Interactions/mitkSegTool2D.h index 1c58bbf035..ed13ab6d29 100644 --- a/Modules/Segmentation/Interactions/mitkSegTool2D.h +++ b/Modules/Segmentation/Interactions/mitkSegTool2D.h @@ -1,294 +1,298 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkSegTool2D_h_Included #define mitkSegTool2D_h_Included #include "mitkCommon.h" #include "mitkImage.h" #include "mitkTool.h" #include #include "mitkInteractionPositionEvent.h" #include "mitkInteractionConst.h" #include "mitkPlanePositionManager.h" #include "mitkRestorePlanePositionOperation.h" #include namespace mitk { class BaseRenderer; /** \brief Abstract base class for segmentation tools. \sa Tool \ingroup Interaction \ingroup ToolManagerEtAl Implements 2D segmentation specific helper methods, that might be of use to all kind of 2D segmentation tools. At the moment these are: - Determination of the slice where the user paints upon (DetermineAffectedImageSlice) - Projection of a 3D contour onto a 2D plane/slice SegTool2D tries to structure the interaction a bit. If you pass "PressMoveRelease" as the interaction type of your derived tool, you might implement the methods OnMousePressed, OnMouseMoved, and OnMouseReleased. Yes, your guess about when they are called is correct. \warning Only to be instantiated by mitk::ToolManager. $Author$ */ class MITKSEGMENTATION_EXPORT SegTool2D : public Tool { public: mitkClassMacro(SegTool2D, Tool); /** \brief Calculates for a given Image and PlaneGeometry, which slice of the image (in index corrdinates) is meant by the plane. \return false, if no slice direction seems right (e.g. rotated planes) \param image \param plane \param affectedDimension The image dimension, which is constant for all points in the plane, e.g. Axial --> 2 \param affectedSlice The index of the image slice */ static bool DetermineAffectedImageSlice(const Image *image, const PlaneGeometry *plane, int &affectedDimension, int &affectedSlice); /** * @brief Updates the surface interpolation by extracting the contour form the given slice. * @param slice the slice from which the contour should be extracted * @param workingImage the segmentation image * @param plane the plane in which the slice lies * @param detectIntersection if true the slice is eroded before contour extraction. If the slice is empty after the * erosion it is most * likely an intersecting contour an will not be added to the SurfaceInterpolationController */ static void UpdateSurfaceInterpolation(const Image *slice, const Image *workingImage, const PlaneGeometry *plane, bool detectIntersection); /** * \brief Extract the slice of an image that the user just scribbles on. The given component denotes the vector component of an vector image. * * \param positionEvent Event that specifies the plane that should be used to slice * \param image Image that should be sliced * \param component The component to be extracted of a given multi-component image. -1 is the default parameter to denote an invalid component. * * \return 'nullptr' if SegTool2D is either unable to determine which slice was affected, or if there was some problem * getting the image data at that position. */ static Image::Pointer GetAffectedImageSliceAs2DImage(const InteractionPositionEvent* positionEvent, const Image* image, unsigned int component = 0); /** * \brief Extract the slice of an image cut by given plane. The given component denotes the vector component of a vector image. * * \param planeGeometry Geometry defining the slice that should be cut out. * \param image Image that should be sliced * \param timeStep TimeStep of the image that shold be sliced * \param component The component to be extracted of a given multi-component image. -1 is the default parameter to denote an invalid component. * * \return 'nullptr' if SegTool2D is either unable to determine which slice was affected, or if there was some problem * getting the image data at that position. */ static Image::Pointer GetAffectedImageSliceAs2DImage(const PlaneGeometry* planeGeometry, const Image* image, TimeStepType timeStep, unsigned int component = 0); static Image::Pointer GetAffectedImageSliceAs2DImageByTimePoint(const PlaneGeometry* planeGeometry, const Image* image, TimePointType timePoint, unsigned int component = 0); /** Convenience overloaded version that can be called for a given planeGeometry, slice image and time step. * Calls static WriteBackSegmentationResults*/ static void WriteBackSegmentationResult(const DataNode* workingNode, const PlaneGeometry* planeGeometry, const Image* segmentationResult, TimeStepType timeStep); /** Convenience overloaded version that can be called for a given planeGeometry, slice image and time step. * For more details see protected WriteSliceToVolume version.*/ static void WriteSliceToVolume(Image* workingImage, const PlaneGeometry* planeGeometry, const Image* slice, TimeStepType timeStep, bool allowUndo); void SetShowMarkerNodes(bool); /** * \brief Enables or disables the 3D interpolation after writing back the 2D segmentation result, and defaults to * true. */ void SetEnable3DInterpolation(bool); void Activated() override; void Deactivated() override; itkSetMacro(IsTimePointChangeAware, bool); itkGetMacro(IsTimePointChangeAware, bool); itkBooleanMacro(IsTimePointChangeAware); protected: SegTool2D(); // purposely hidden SegTool2D(const char *, const us::Module *interactorModule = nullptr); // purposely hidden ~SegTool2D() override; /** * @brief returns the segmentation node that should be modified by the tool. */ DataNode* GetWorkingDataNode() const; Image* GetWorkingData() const; DataNode* GetReferenceDataNode() const; Image* GetReferenceData() const; /** * This function can be reimplemented by derived classes to react on changes of the current * time point. Default implementation does nothing.*/ virtual void OnTimePointChanged(); struct SliceInformation { mitk::Image::ConstPointer slice; const mitk::PlaneGeometry *plane = nullptr; mitk::TimeStepType timestep = 0; SliceInformation() = default; SliceInformation(const mitk::Image* aSlice, const mitk::PlaneGeometry* aPlane, mitk::TimeStepType aTimestep); }; /** * @brief Updates the surface interpolation by extracting the contour form the given slice. * @param sliceInfos vector of slice information instances from which the contours should be extracted * @param workingImage the segmentation image * @param detectIntersection if true the slice is eroded before contour extraction. If the slice is empty after the * erosion it is most * likely an intersecting contour an will not be added to the SurfaceInterpolationController */ static void UpdateSurfaceInterpolation(const std::vector& sliceInfos, const Image* workingImage, bool detectIntersection); /** * \brief Filters events that cannot be handled by 2D segmentation tools * * Currently an event is discarded if it was not sent by a 2D renderwindow and if it is * not of type InteractionPositionEvent */ bool FilterEvents(InteractionEvent *interactionEvent, DataNode *dataNode) override; /** \brief Extract the slice of the currently selected working image that the user just scribbles on. \return nullptr if SegTool2D is either unable to determine which slice was affected, or if there was some problem getting the image data at that position, or just no working image is selected. */ Image::Pointer GetAffectedWorkingSlice(const InteractionPositionEvent *) const; /** \brief Extract the slice of the currently selected reference image that the user just scribbles on. \return nullptr if SegTool2D is either unable to determine which slice was affected, or if there was some problem getting the image data at that position, or just no reference image is selected. */ Image::Pointer GetAffectedReferenceSlice(const InteractionPositionEvent *) const; /** Overload version that gets the reference slice passed on the passed plane geometry and timestep.*/ Image::Pointer GetAffectedReferenceSlice(const PlaneGeometry* planeGeometry, TimeStepType timeStep) const; /** Convenience version that can be called for a given event (which is used to deduce timepoint and plane) and a slice image. * Calls non static WriteBackSegmentationResults*/ void WriteBackSegmentationResult(const InteractionPositionEvent *, const Image* segmentationResult); /** Convenience version that can be called for a given planeGeometry, slice image and time step. * Calls non static WriteBackSegmentationResults*/ void WriteBackSegmentationResult(const PlaneGeometry *planeGeometry, const Image* segmentationResult, TimeStepType timeStep); /** Overloaded version that calls the static version and also adds the contour markers. * @remark If the sliceList is empty, this function does nothing.*/ void WriteBackSegmentationResults(const std::vector &sliceList, bool writeSliceToVolume = true); /** \brief Writes all provided source slices into the data of the passed workingNode. * The function does the following: 1) for every passed slice write it to workingNode (and generate and undo/redo step); * 2) update the surface interpolation and 3) marke the node as modified. * @param workingNode Pointer to the node that contains the working image. * @param sliceList Vector of all slices that should be written into the workingNode. If the list is * empty, the function call does nothing. * @param writeSliceToVolume If set to false the write operation (WriteSliceToVolume will be skipped) * and only the surface interpolation will be updated. * @pre workingNode must point to a valid instance and contain an image instance as data.*/ static void WriteBackSegmentationResults(const DataNode* workingNode, const std::vector& sliceList, bool writeSliceToVolume = true); /** Writes the provided source slice into the target slice with the given pixel value. * If passed workingImage is a LabelSetImage the label set rules will be applied when * writing all non zero source pixels into the target slice (e.g. locked lables will not be touched) * with the given paintingPixelValue. * @param targetSlice Pointer to the slice that should be filled with the content of the sourceSlice. * @param sourceSlice Pointer to the slice that is the source/preview every pixel will be (tried to be) transfered . * @param workingImage Will be used to check if LabeSetImageRules have to be applied and the label set state. * @param paintingPixelValue Value that will be used to paint onto target slice. * @pre targetSlice must point to a valid instance. * @pre sourceSlice must point to a valid instance. * @pre workingImage must point to a valid instance.*/ static void WritePreviewOnWorkingImage( Image *targetSlice, const Image *sourceSlice, const Image *workingImage, int paintingPixelValue); /** Writes a provided slice into the passed working image. The content of working image that is covered * by the slice will be completly overwritten. If asked for it also generates the needed * undo/redo steps. * @param workingImage Pointer to the image that is the target of the write operation. * @param sliceInfo SliceInfo instance that containes the slice image, the defining plane geometry and time step. * @param allowUndo Indicates if undo/redo operations should be registered for the write operation * performed by this call. true: undo/redo will be generated; false: no undo/redo will be generated, so * this operation cannot be revoked by the user. * @pre workingImage must point to a valid instance.*/ static void WriteSliceToVolume(Image* workingImage, const SliceInformation &sliceInfo, bool allowUndo); /** \brief Adds a new node called Contourmarker to the datastorage which holds a mitk::PlanarFigure. By selecting this node the slicestack will be reoriented according to the passed PlanarFigure's Geometry */ int AddContourmarker(const PlaneGeometry* planeGeometry, unsigned int sliceIndex); void InteractiveSegmentationBugMessage(const std::string &message) const; + /** Helper function to check if a position events points to a point inside the boundingbox of a passed + data instance.*/ + static bool IsPositionEventInsideImageRegion(InteractionPositionEvent* positionEvent, const BaseData* data); + BaseRenderer *m_LastEventSender = nullptr; unsigned int m_LastEventSlice = 0; itkGetMacro(LastTimePointTriggered, TimePointType); private: /** Internal method that gets triggered as soon as the tool manager indicates a * time point change. If the time point has changed since last time and tool * is set to be time point change aware, OnTimePointChanged() will be called.*/ void OnTimePointChangedInternal(); static void RemoveContourFromInterpolator(const SliceInformation& sliceInfo); // The prefix of the contourmarkername. Suffix is a consecutive number const std::string m_Contourmarkername; bool m_ShowMarkerNodes = false; static bool m_SurfaceInterpolationEnabled; bool m_IsTimePointChangeAware = true; TimePointType m_LastTimePointTriggered = 0.; }; } // namespace #endif diff --git a/Modules/Segmentation/Interactions/mitkSetRegionTool.cpp b/Modules/Segmentation/Interactions/mitkSetRegionTool.cpp deleted file mode 100644 index 486679ddaf..0000000000 --- a/Modules/Segmentation/Interactions/mitkSetRegionTool.cpp +++ /dev/null @@ -1,138 +0,0 @@ -/*============================================================================ - -The Medical Imaging Interaction Toolkit (MITK) - -Copyright (c) German Cancer Research Center (DKFZ) -All rights reserved. - -Use of this source code is governed by a 3-clause BSD license that can be -found in the LICENSE file. - -============================================================================*/ - -#include "mitkSetRegionTool.h" - -#include "mitkToolManager.h" - -#include "mitkBaseRenderer.h" - -#include -#include - -#include -#include - -mitk::SetRegionTool::SetRegionTool(int paintingPixelValue) - : FeedbackContourTool("PressMoveRelease"), m_PaintingPixelValue(paintingPixelValue) -{ -} - -mitk::SetRegionTool::~SetRegionTool() -{ -} - -void mitk::SetRegionTool::ConnectActionsAndFunctions() -{ - CONNECT_FUNCTION("PrimaryButtonPressed", OnMousePressed); - CONNECT_FUNCTION("Release", OnMouseReleased); - CONNECT_FUNCTION("Move", OnMouseMoved); -} - -void mitk::SetRegionTool::Activated() -{ - Superclass::Activated(); -} - -void mitk::SetRegionTool::Deactivated() -{ - Superclass::Deactivated(); -} - -void mitk::SetRegionTool::OnMousePressed(StateMachineAction *, InteractionEvent *interactionEvent) -{ - auto *positionEvent = dynamic_cast(interactionEvent); - if (!positionEvent) - return; - - m_LastEventSender = positionEvent->GetSender(); - m_LastEventSlice = m_LastEventSender->GetSlice(); - - // 1. Get the working image - Image::Pointer workingSlice = FeedbackContourTool::GetAffectedWorkingSlice(positionEvent); - if (workingSlice.IsNull()) - return; // can't do anything without the segmentation - - // if click was outside the image, don't continue - const BaseGeometry *sliceGeometry = workingSlice->GetGeometry(); - itk::Index<3> projectedPointIn2D; - sliceGeometry->WorldToIndex(positionEvent->GetPositionInWorld(), projectedPointIn2D); - if (!sliceGeometry->IsIndexInside(projectedPointIn2D)) - { - MITK_WARN << "Point outside of segmentation slice." << std::endl; - return; // can't use that as a seed point - } - - typedef itk::Image InputImageType; - typedef InputImageType::IndexType IndexType; - typedef itk::ConnectedThresholdImageFilter RegionGrowingFilterType; - RegionGrowingFilterType::Pointer regionGrower = RegionGrowingFilterType::New(); - - // convert world coordinates to image indices - IndexType seedIndex; - sliceGeometry->WorldToIndex(positionEvent->GetPositionInWorld(), seedIndex); - - // perform region growing in desired segmented region - InputImageType::Pointer itkImage = InputImageType::New(); - CastToItkImage(workingSlice, itkImage); - regionGrower->SetInput(itkImage); - regionGrower->AddSeed(seedIndex); - - InputImageType::PixelType bound = itkImage->GetPixel(seedIndex); - - regionGrower->SetLower(bound); - regionGrower->SetUpper(bound); - regionGrower->SetReplaceValue(1); - - itk::BinaryFillholeImageFilter::Pointer fillHolesFilter = - itk::BinaryFillholeImageFilter::New(); - - fillHolesFilter->SetInput(regionGrower->GetOutput()); - fillHolesFilter->SetForegroundValue(1); - - // Store result and preview - mitk::Image::Pointer resultImage = mitk::GrabItkImageMemory(fillHolesFilter->GetOutput()); - resultImage->SetGeometry(workingSlice->GetGeometry()); - // Get the current working color - DataNode *workingNode(this->GetToolManager()->GetWorkingData(0)); - if (!workingNode) - return; - - mitk::ImageToContourModelFilter::Pointer contourextractor = mitk::ImageToContourModelFilter::New(); - contourextractor->SetInput(resultImage); - contourextractor->Update(); - - mitk::ContourModel::Pointer awesomeContour = contourextractor->GetOutput(); - - this->UpdateCurrentFeedbackContour(awesomeContour); - - FeedbackContourTool::SetFeedbackContourVisible(true); - mitk::RenderingManager::GetInstance()->RequestUpdate(positionEvent->GetSender()->GetRenderWindow()); -} - -void mitk::SetRegionTool::OnMouseReleased(StateMachineAction *, InteractionEvent *interactionEvent) -{ - auto *positionEvent = dynamic_cast(interactionEvent); - if (!positionEvent) - return; - - assert(positionEvent->GetSender()->GetRenderWindow()); - // 1. Hide the feedback contour, find out which slice the user clicked, find out which slice of the toolmanager's - // working image corresponds to that - mitk::RenderingManager::GetInstance()->RequestUpdate(positionEvent->GetSender()->GetRenderWindow()); - - this->WriteBackFeedbackContourAsSegmentationResult(positionEvent, m_PaintingPixelValue); -} - -void mitk::SetRegionTool::OnMouseMoved(mitk::StateMachineAction *, mitk::InteractionEvent *) -{ -} diff --git a/Modules/Segmentation/Interactions/mitkSetRegionTool.h b/Modules/Segmentation/Interactions/mitkSetRegionTool.h deleted file mode 100644 index 9fab9b8030..0000000000 --- a/Modules/Segmentation/Interactions/mitkSetRegionTool.h +++ /dev/null @@ -1,60 +0,0 @@ -/*============================================================================ - -The Medical Imaging Interaction Toolkit (MITK) - -Copyright (c) German Cancer Research Center (DKFZ) -All rights reserved. - -Use of this source code is governed by a 3-clause BSD license that can be -found in the LICENSE file. - -============================================================================*/ - -#ifndef mitkSetRegionTool_h_Included -#define mitkSetRegionTool_h_Included - -#include "mitkCommon.h" -#include "mitkFeedbackContourTool.h" -#include - -namespace mitk -{ - class Image; - class StateMachineAction; - class InteractionEvent; - /** - \brief Fills or erases a 2D region - - \sa FeedbackContourTool - \sa ExtractImageFilter - - \ingroup Interactions - - Finds the outer contour of a shape in 2D (possibly including holes or single patches) and sets all - the inside pixels to a specified value. This might fill holes or erase segmentations. - - \warning Only to be instantiated by mitk::ToolManager. - */ - class MITKSEGMENTATION_EXPORT SetRegionTool : public FeedbackContourTool - { - public: - mitkClassMacro(SetRegionTool, FeedbackContourTool); - - protected: - SetRegionTool(int paintingPixelValue = 1); // purposely hidden - ~SetRegionTool() override; - - void ConnectActionsAndFunctions() override; - - void Activated() override; - void Deactivated() override; - - virtual void OnMousePressed(StateMachineAction *, InteractionEvent *); - virtual void OnMouseReleased(StateMachineAction *, InteractionEvent *); - virtual void OnMouseMoved(StateMachineAction *, InteractionEvent *); - int m_PaintingPixelValue; - }; - -} // namespace - -#endif diff --git a/Modules/Segmentation/Interactions/mitkTool.h b/Modules/Segmentation/Interactions/mitkTool.h index af0224ea3c..2eec4b6f7b 100644 --- a/Modules/Segmentation/Interactions/mitkTool.h +++ b/Modules/Segmentation/Interactions/mitkTool.h @@ -1,272 +1,273 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #ifndef mitkTool_h_Included #define mitkTool_h_Included #include "itkObjectFactoryBase.h" #include "itkVersion.h" #include "mitkCommon.h" #include "mitkDataNode.h" #include "mitkEventStateMachine.h" #include "mitkInteractionEventObserver.h" #include "mitkLabelSetImage.h" #include "mitkMessage.h" #include "mitkNodePredicateAnd.h" #include "mitkNodePredicateDataType.h" #include "mitkNodePredicateDimension.h" #include "mitkNodePredicateNot.h" #include "mitkNodePredicateOr.h" #include "mitkNodePredicateProperty.h" #include "mitkToolEvents.h" #include "mitkToolFactoryMacro.h" #include #include #include #include #include #include #include "usServiceRegistration.h" namespace us { class ModuleResource; } namespace mitk { class ToolManager; /** \brief Base class of all tools used by mitk::ToolManager. \sa ToolManager \sa SegTool2D \ingroup Interaction \ingroup ToolManagerEtAl Every tool is a mitk::EventStateMachine, which can follow any transition pattern that it likes. Every derived tool should always call SuperClass::Deactivated() at the end of its own implementation of Deactivated, because mitk::Tool resets the interaction configuration in this method. Only if you are very sure that you covered all possible things that might happen to your own tool, you should consider not to reset the configuration. To learn about the MITK implementation of state machines in general, have a look at \ref InteractionPage. To derive a non-abstract tool, you inherit from mitk::Tool (or some other base class further down the inheritance tree), and in your own parameterless constructor (that is called from the itkFactorylessNewMacro that you use) you pass a state machine name (interactor type). Names and .xml-files for valid state machines can be found in different "Interaction" directories (which might be enhanced by you). You have to implement at least GetXPM() and GetName() to provide some identification. Each Tool knows its ToolManager, which can provide the data that the tool should work on. \warning Only to be instantiated by mitk::ToolManager (because SetToolManager has to be called). All other uses are unsupported. $Author$ */ class MITKSEGMENTATION_EXPORT Tool : public EventStateMachine, public InteractionEventObserver { public: typedef mitk::Label::PixelType DefaultSegmentationDataType; /** * \brief To let GUI process new events (e.g. qApp->processEvents() ) */ Message<> GUIProcessEventsMessage; /** * \brief To send error messages (to be shown by some GUI) */ Message1 ErrorMessage; /** * \brief To send whether the tool is busy (to be shown by some GUI) */ Message1 CurrentlyBusy; /** * \brief To send general messages (to be shown by some GUI) */ Message1 GeneralMessage; mitkClassMacro(Tool, EventStateMachine); // no New(), there should only be subclasses /** \brief Returns an icon in the XPM format. This icon has to fit into some kind of button in most applications, so make it smaller than 25x25 pixels. XPM is e.g. supported by The Gimp. But if you open any XPM file in your text editor, you will see that you could also "draw" it with an editor. */ + [[deprecated]] virtual const char **GetXPM() const = 0; /** * \brief Returns the path of an icon. * * This icon is preferred to the XPM icon. */ virtual std::string GetIconPath() const { return ""; } /** * \brief Returns the path of a cursor icon. * */ virtual us::ModuleResource GetCursorIconResource() const; /** * @brief Returns the tool button icon of the tool wrapped by a usModuleResource * @return a valid ModuleResource or an invalid if this function * is not reimplemented */ virtual us::ModuleResource GetIconResource() const; /** \brief Returns the name of this tool. Make it short! This name has to fit into some kind of button in most applications, so take some time to think of a good name! */ virtual const char *GetName() const = 0; /** \brief Name of a group. You can group several tools by assigning a group name. Graphical tool selectors might use this information to group tools. (What other reason could there be?) */ virtual const char *GetGroup() const; virtual void InitializeStateMachine(); /** * \brief Interface for GUI creation. * * This is the basic interface for creation of a GUI object belonging to one tool. * * Tools that support a GUI (e.g. for display/editing of parameters) should follow some rules: * * - A Tool and its GUI are two separate classes * - There may be several instances of a GUI at the same time. * - mitk::Tool is toolkit (Qt, wxWidgets, etc.) independent, the GUI part is of course dependent * - The GUI part inherits both from itk::Object and some GUI toolkit class * - The GUI class name HAS to be constructed like "toolkitPrefix" tool->GetClassName() + "toolkitPostfix", e.g. * MyTool -> wxMyToolGUI * - For each supported toolkit there is a base class for tool GUIs, which contains some convenience methods * - Tools notify the GUI about changes using ITK events. The GUI must observe interesting events. * - The GUI base class may convert all ITK events to the GUI toolkit's favoured messaging system (Qt -> signals) * - Calling methods of a tool by its GUI is done directly. * In some cases GUIs don't want to be notified by the tool when they cause a change in a tool. * There is a macro CALL_WITHOUT_NOTICE(method()), which will temporarily disable all notifications during a * method call. */ virtual itk::Object::Pointer GetGUI(const std::string &toolkitPrefix, const std::string &toolkitPostfix); virtual NodePredicateBase::ConstPointer GetReferenceDataPreference() const; virtual NodePredicateBase::ConstPointer GetWorkingDataPreference() const; DataNode::Pointer CreateEmptySegmentationNode(const Image *original, const std::string &organName, const mitk::Color &color) const; DataNode::Pointer CreateSegmentationNode(Image *image, const std::string &organName, const mitk::Color &color) const; /** Function used to check if a tool can handle the referenceData and (if specified) the working data. @pre referenceData must be a valid pointer @param referenceData Pointer to the data that should be checked as valid reference for the tool. @param workingData Pointer to the data that should be checked as valid working data for this tool. This parameter can be null if no working data is specified so far.*/ virtual bool CanHandle(const BaseData *referenceData, const BaseData *workingData) const; protected: friend class ToolManager; virtual void SetToolManager(ToolManager *); /** Returns the pointer to the tool manager of the tool. May be null.*/ ToolManager* GetToolManager() const; /** Returns the data storage provided by the toolmanager. May be null (e.g. if ToolManager is not set).*/ mitk::DataStorage* GetDataStorage() const; void ConnectActionsAndFunctions() override; /** \brief Called when the tool gets activated. Derived tools should call their parents implementation at the beginning of the overriding function. */ virtual void Activated(); /** \brief Called when the tool gets deactivated. Derived tools should call their parents implementation at the end of the overriding function. */ virtual void Deactivated(); /** \brief Let subclasses change their event configuration. */ std::string m_EventConfig; Tool(const char *, const us::Module *interactorModule = nullptr); // purposely hidden ~Tool() override; void Notify(InteractionEvent *interactionEvent, bool isHandled) override; bool FilterEvents(InteractionEvent *, DataNode *) override; private: ToolManager* m_ToolManager; // for reference data NodePredicateDataType::Pointer m_PredicateImages; NodePredicateDimension::Pointer m_PredicateDim3; NodePredicateDimension::Pointer m_PredicateDim4; NodePredicateOr::Pointer m_PredicateDimension; NodePredicateAnd::Pointer m_PredicateImage3D; NodePredicateProperty::Pointer m_PredicateBinary; NodePredicateNot::Pointer m_PredicateNotBinary; NodePredicateProperty::Pointer m_PredicateSegmentation; NodePredicateNot::Pointer m_PredicateNotSegmentation; NodePredicateProperty::Pointer m_PredicateHelper; NodePredicateNot::Pointer m_PredicateNotHelper; NodePredicateAnd::Pointer m_PredicateImageColorful; NodePredicateAnd::Pointer m_PredicateImageColorfulNotHelper; NodePredicateAnd::Pointer m_PredicateReference; // for working data NodePredicateAnd::Pointer m_IsSegmentationPredicate; std::string m_InteractorType; std::map m_DisplayInteractionConfigs; const us::Module *m_InteractorModule; }; } // namespace #endif diff --git a/Modules/Segmentation/Resources/Close_48x48.png b/Modules/Segmentation/Resources/Close_48x48.png new file mode 100644 index 0000000000..9f1da9fd4e Binary files /dev/null and b/Modules/Segmentation/Resources/Close_48x48.png differ diff --git a/Modules/Segmentation/Resources/Close_Cursor_32x32.png b/Modules/Segmentation/Resources/Close_Cursor_32x32.png new file mode 100644 index 0000000000..9953754248 Binary files /dev/null and b/Modules/Segmentation/Resources/Close_Cursor_32x32.png differ diff --git a/Modules/Segmentation/Resources/Interactions/MouseReleaseOnly.xml b/Modules/Segmentation/Resources/Interactions/MouseReleaseOnly.xml new file mode 100644 index 0000000000..98f74e2964 --- /dev/null +++ b/Modules/Segmentation/Resources/Interactions/MouseReleaseOnly.xml @@ -0,0 +1,10 @@ + + + + + + + + + + \ No newline at end of file diff --git a/Modules/Segmentation/files.cmake b/Modules/Segmentation/files.cmake index 13c2a59b3b..ac97e25423 100644 --- a/Modules/Segmentation/files.cmake +++ b/Modules/Segmentation/files.cmake @@ -1,108 +1,110 @@ set(CPP_FILES Algorithms/mitkCalculateSegmentationVolume.cpp Algorithms/mitkContourModelSetToImageFilter.cpp Algorithms/mitkContourSetToPointSetFilter.cpp Algorithms/mitkContourUtils.cpp Algorithms/mitkCorrectorAlgorithm.cpp Algorithms/mitkDiffImageApplier.cpp Algorithms/mitkDiffSliceOperation.cpp Algorithms/mitkDiffSliceOperationApplier.cpp Algorithms/mitkFeatureBasedEdgeDetectionFilter.cpp Algorithms/mitkImageLiveWireContourModelFilter.cpp Algorithms/mitkImageToContourFilter.cpp #Algorithms/mitkImageToContourModelFilter.cpp Algorithms/mitkImageToLiveWireContourFilter.cpp Algorithms/mitkManualSegmentationToSurfaceFilter.cpp Algorithms/mitkOtsuSegmentationFilter.cpp Algorithms/mitkSegmentationHelper.cpp Algorithms/mitkSegmentationObjectFactory.cpp Algorithms/mitkShapeBasedInterpolationAlgorithm.cpp Algorithms/mitkShowSegmentationAsSmoothedSurface.cpp Algorithms/mitkShowSegmentationAsSurface.cpp Algorithms/mitkVtkImageOverwrite.cpp Controllers/mitkSegmentationInterpolationController.cpp Controllers/mitkToolManager.cpp Controllers/mitkSegmentationModuleActivator.cpp Controllers/mitkToolManagerProvider.cpp DataManagement/mitkContour.cpp DataManagement/mitkContourSet.cpp DataManagement/mitkExtrudedContour.cpp Interactions/mitkAddContourTool.cpp Interactions/mitkAutoCropTool.cpp Interactions/mitkSegWithPreviewTool.cpp Interactions/mitkBinaryThresholdBaseTool.cpp Interactions/mitkBinaryThresholdTool.cpp Interactions/mitkBinaryThresholdULTool.cpp + Interactions/mitkCloseRegionTool.cpp Interactions/mitkContourModelInteractor.cpp Interactions/mitkContourModelLiveWireInteractor.cpp Interactions/mitkEditableContourTool.cpp Interactions/mitkLiveWireTool2D.cpp Interactions/mitkLassoTool.cpp Interactions/mitkContourTool.cpp Interactions/mitkDrawPaintbrushTool.cpp Interactions/mitkErasePaintbrushTool.cpp Interactions/mitkEraseRegionTool.cpp Interactions/mitkFeedbackContourTool.cpp + Interactions/mitkFillRegionBaseTool.cpp Interactions/mitkFillRegionTool.cpp Interactions/mitkOtsuTool3D.cpp Interactions/mitkPaintbrushTool.cpp Interactions/mitkRegionGrowingTool.cpp Interactions/mitkSegmentationsProcessingTool.cpp - Interactions/mitkSetRegionTool.cpp Interactions/mitkSegTool2D.cpp Interactions/mitkSubtractContourTool.cpp Interactions/mitkTool.cpp Interactions/mitkToolCommand.cpp Interactions/mitkPickingTool.cpp Interactions/mitknnUnetTool.cpp Interactions/mitkSegmentationInteractor.cpp #SO Interactions/mitkProcessExecutor.cpp Rendering/mitkContourMapper2D.cpp Rendering/mitkContourSetMapper2D.cpp Rendering/mitkContourSetVtkMapper3D.cpp Rendering/mitkContourVtkMapper3D.cpp SegmentationUtilities/BooleanOperations/mitkBooleanOperation.cpp SegmentationUtilities/MorphologicalOperations/mitkMorphologicalOperations.cpp #Added from ML Controllers/mitkSliceBasedInterpolationController.cpp Algorithms/mitkSurfaceStampImageFilter.cpp ) set(RESOURCE_FILES Add.svg Add_Cursor.svg AI.svg AI_Cursor.svg Erase.svg Erase_Cursor.svg Fill.svg Fill_Cursor.svg LiveWire.svg LiveWire_Cursor.svg Lasso.svg Lasso_Cursor.svg Otsu.svg Paint.svg Paint_Cursor.svg Picking.svg RegionGrowing.svg RegionGrowing_Cursor.svg Subtract.svg Subtract_Cursor.svg Threshold.svg ULThreshold.svg Wipe.svg Wipe_Cursor.svg Interactions/dummy.xml Interactions/EditableContourTool.xml Interactions/PickingTool.xml + Interactions/MouseReleaseOnly.xml Interactions/PressMoveRelease.xml Interactions/PressMoveReleaseAndPointSetting.xml Interactions/PressMoveReleaseWithCTRLInversion.xml Interactions/PressMoveReleaseWithCTRLInversionAllMouseMoves.xml Interactions/SegmentationToolsConfig.xml Interactions/ContourModelModificationConfig.xml Interactions/ContourModelModificationInteractor.xml ) diff --git a/Plugins/org.mitk.gui.qt.mxnmultiwidgeteditor/src/QmitkMxNMultiWidgetEditor.cpp b/Plugins/org.mitk.gui.qt.mxnmultiwidgeteditor/src/QmitkMxNMultiWidgetEditor.cpp index fb3912a94d..9b86ce4441 100644 --- a/Plugins/org.mitk.gui.qt.mxnmultiwidgeteditor/src/QmitkMxNMultiWidgetEditor.cpp +++ b/Plugins/org.mitk.gui.qt.mxnmultiwidgeteditor/src/QmitkMxNMultiWidgetEditor.cpp @@ -1,229 +1,232 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkMxNMultiWidgetEditor.h" #include #include #include #include #include // mxn multi widget editor plugin #include "QmitkMultiWidgetDecorationManager.h" // mitk qt widgets module #include #include #include // qt #include const QString QmitkMxNMultiWidgetEditor::EDITOR_ID = "org.mitk.editors.mxnmultiwidget"; struct QmitkMxNMultiWidgetEditor::Impl final { Impl(); ~Impl() = default; QmitkInteractionSchemeToolBar* m_InteractionSchemeToolBar; QmitkMultiWidgetConfigurationToolBar* m_ConfigurationToolBar; }; QmitkMxNMultiWidgetEditor::Impl::Impl() : m_InteractionSchemeToolBar(nullptr) , m_ConfigurationToolBar(nullptr) { // nothing here } ////////////////////////////////////////////////////////////////////////// // QmitkMxNMultiWidgetEditor ////////////////////////////////////////////////////////////////////////// QmitkMxNMultiWidgetEditor::QmitkMxNMultiWidgetEditor() : QmitkAbstractMultiWidgetEditor() , m_Impl(std::make_unique()) { // nothing here } QmitkMxNMultiWidgetEditor::~QmitkMxNMultiWidgetEditor() { GetSite()->GetPage()->RemovePartListener(this); } berry::IPartListener::Events::Types QmitkMxNMultiWidgetEditor::GetPartEventTypes() const { return Events::CLOSED | Events::OPENED | Events::HIDDEN | Events::VISIBLE; } -void QmitkMxNMultiWidgetEditor::PartOpened(const berry::IWorkbenchPartReference::Pointer& partRef) +void QmitkMxNMultiWidgetEditor::PartClosed(const berry::IWorkbenchPartReference::Pointer& partRef) { if (partRef->GetId() == QmitkMxNMultiWidgetEditor::EDITOR_ID) { const auto& multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr != multiWidget) { - multiWidget->SetCrosshairVisibility(true); - multiWidget->ActivateMenuWidget(true); + multiWidget->RemovePlanesFromDataStorage(); + multiWidget->ActivateMenuWidget(false); } } } -void QmitkMxNMultiWidgetEditor::PartClosed(const berry::IWorkbenchPartReference::Pointer& partRef) +void QmitkMxNMultiWidgetEditor::PartOpened(const berry::IWorkbenchPartReference::Pointer& partRef) { if (partRef->GetId() == QmitkMxNMultiWidgetEditor::EDITOR_ID) { const auto& multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr != multiWidget) { - multiWidget->SetCrosshairVisibility(false); - multiWidget->ActivateMenuWidget(false); + multiWidget->AddPlanesToDataStorage(); + multiWidget->ActivateMenuWidget(true); } } } void QmitkMxNMultiWidgetEditor::PartHidden(const berry::IWorkbenchPartReference::Pointer& partRef) { if (partRef->GetId() == QmitkMxNMultiWidgetEditor::EDITOR_ID) { const auto& multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr != multiWidget) { multiWidget->ActivateMenuWidget(false); } } } void QmitkMxNMultiWidgetEditor::PartVisible(const berry::IWorkbenchPartReference::Pointer& partRef) { if (partRef->GetId() == QmitkMxNMultiWidgetEditor::EDITOR_ID) { const auto& multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr != multiWidget) { multiWidget->ActivateMenuWidget(true); } } } void QmitkMxNMultiWidgetEditor::OnLayoutSet(int row, int column) { - const auto &multiWidget = dynamic_cast(GetMultiWidget()); + const auto &multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr != multiWidget) { QmitkAbstractMultiWidgetEditor::OnLayoutSet(row, column); - multiWidget->SetCrosshairVisibility(true); + multiWidget->AddPlanesToDataStorage(); } } void QmitkMxNMultiWidgetEditor::OnInteractionSchemeChanged(mitk::InteractionSchemeSwitcher::InteractionScheme scheme) { const auto &multiWidget = GetMultiWidget(); if (nullptr == multiWidget) { return; } if (mitk::InteractionSchemeSwitcher::PACSStandard == scheme) { m_Impl->m_InteractionSchemeToolBar->setVisible(true); } else { m_Impl->m_InteractionSchemeToolBar->setVisible(false); } QmitkAbstractMultiWidgetEditor::OnInteractionSchemeChanged(scheme); } ////////////////////////////////////////////////////////////////////////// // PRIVATE ////////////////////////////////////////////////////////////////////////// void QmitkMxNMultiWidgetEditor::SetFocus() { const auto& multiWidget = GetMultiWidget(); if (nullptr != multiWidget) { multiWidget->setFocus(); } } void QmitkMxNMultiWidgetEditor::CreateQtPartControl(QWidget* parent) { QHBoxLayout *layout = new QHBoxLayout(parent); layout->setContentsMargins(0, 0, 0, 0); berry::IBerryPreferences *preferences = dynamic_cast(GetPreferences().GetPointer()); auto multiWidget = GetMultiWidget(); if (nullptr == multiWidget) { multiWidget = new QmitkMxNMultiWidget(parent, 0, nullptr); // create left toolbar: interaction scheme toolbar to switch how the render window navigation behaves in PACS mode if (nullptr == m_Impl->m_InteractionSchemeToolBar) { m_Impl->m_InteractionSchemeToolBar = new QmitkInteractionSchemeToolBar(parent); layout->addWidget(m_Impl->m_InteractionSchemeToolBar); } m_Impl->m_InteractionSchemeToolBar->SetInteractionEventHandler(multiWidget->GetInteractionEventHandler()); multiWidget->SetDataStorage(GetDataStorage()); multiWidget->InitializeMultiWidget(); SetMultiWidget(multiWidget); } layout->addWidget(multiWidget); // create right toolbar: configuration toolbar to change the render window widget layout if (nullptr == m_Impl->m_ConfigurationToolBar) { m_Impl->m_ConfigurationToolBar = new QmitkMultiWidgetConfigurationToolBar(multiWidget); layout->addWidget(m_Impl->m_ConfigurationToolBar); } connect(m_Impl->m_ConfigurationToolBar, &QmitkMultiWidgetConfigurationToolBar::LayoutSet, this, &QmitkMxNMultiWidgetEditor::OnLayoutSet); connect(m_Impl->m_ConfigurationToolBar, &QmitkMultiWidgetConfigurationToolBar::Synchronized, this, &QmitkMxNMultiWidgetEditor::OnSynchronize); connect(m_Impl->m_ConfigurationToolBar, &QmitkMultiWidgetConfigurationToolBar::InteractionSchemeChanged, this, &QmitkMxNMultiWidgetEditor::OnInteractionSchemeChanged); GetSite()->GetPage()->AddPartListener(this); OnPreferencesChanged(preferences); } void QmitkMxNMultiWidgetEditor::OnPreferencesChanged(const berry::IBerryPreferences* preferences) { const auto& multiWidget = GetMultiWidget(); if (nullptr == multiWidget) { return; } // update decoration preferences //m_Impl->m_MultiWidgetDecorationManager->DecorationPreferencesChanged(preferences); + int crosshairGapSize = preferences->GetInt("crosshair gap size", 32); + multiWidget->SetCrosshairGap(crosshairGapSize); + // zooming and panning preferences bool constrainedZooming = preferences->GetBool("Use constrained zooming and panning", true); mitk::RenderingManager::GetInstance()->SetConstrainedPanningZooming(constrainedZooming); bool PACSInteractionScheme = preferences->GetBool("PACS like mouse interaction", false); OnInteractionSchemeChanged(PACSInteractionScheme ? mitk::InteractionSchemeSwitcher::PACSStandard : mitk::InteractionSchemeSwitcher::MITKStandard); - mitk::RenderingManager::GetInstance()->InitializeViewsByBoundingObjects(GetDataStorage()); + mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } diff --git a/Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentation.dox b/Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentation.dox index 8fff9e1c8c..5098e80b45 100644 --- a/Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentation.dox +++ b/Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentation.dox @@ -1,415 +1,422 @@ /** \page org_mitk_views_segmentation The Segmentation View \imageMacro{segmentation-dox.svg,"Icon of the segmentation view",2.00} Some of the features described below are closed source additions to the open source toolkit MITK and are not available in every application. \tableofcontents \section org_mitk_views_segmentationoverview Overview Segmentation is the act of partitioning an image into subsets by either manual or automated delineation to create i.e. a distinction between foreground and background. A multilabel segmentation can contain more than one label and more than one layer. This allows you to create different labels for different regions of interest encapsulated in one single image. The difference between labels and layers is that labels on one layer cannot overlap but labels on different layers can. The MITK segmentation plugin allows you to create multilabel segmentations of anatomical and pathological structures in medical images. The plugin consists of two views:
  • Segmentation View: Manual and (semi-)automatic segmentation
  • \subpage org_mitk_views_segmentationutilities : Segmentation post-processing
In this documentation, the features and usage of the segmentation view will be described. For an introduction to the segmentation utilities please be referred to the respective documentation pages. \imageMacro{QmitkSegmentationPlugin_Overview.png,"Segmentation plugin overview", 16.00} \section org_mitk_views_segmentationpreferences Preferences The segmentation plugin offers a number of preferences which can be set via the MITK Workbench application preferences: \imageMacro{QmitkSegmentationPreferences.png,"Segmentation preferences", 10.00}
  • Slim view: Allows to show or hide the tool button description of the segmentation view
  • 2D display: Specify whether the segmentation is drawn as outline or as a transparent overlay
  • Show only selected nodes: Enable if only the selected segmentation and the reference image should be visible
  • Smoothed surface creation: Set certain smoothing parameters for surface creation
  • Default label set preset: Start a new segmentation with this preset instead of a default label
  • Label creation: Assign default names and colors to new labels or ask users for them
  • Label suggestions: Specify custom suggestions for label names and colors
\section org_mitk_views_segmentationtechnicalissues Technical issues The segmentation plugin makes a number of assumptions:
  • Images must be 2D, 3D, or 3D+t.
  • Images must be single-values, i.e. CT, MRI or "normal" ultrasound. Images from color doppler or photographic (RGB) images are only partially supported (please be aware that some tools might not be compatible with this image type).
  • Segmentations are handled as multilabel images of the same extent as the original image.
\section org_mitk_views_segmentationdataselection Data selection & creating new segmentations To select a reference image for the segmentation, click on the Selected image selection widget and choose a suitable image from the selection available in the data manager. Once an image is selected, a new segmentation can be created on this reference image by clicking the button to the right of the Selected segmentation selection widget. A new multilabel segmentation with an initial label is automatically generated. The new segmentation will be added to the data manager as sub-node of the reference image. This item is then automatically selected in the data selection, which allows to start editing the new segmentation right away. \imageMacro{"QmitkSegmentation_DataSelection.png","Data selection",12} Alternatively to creating a new segmentation, an existing one can be edited as well. If a reference image is selected for which a segmentation already exists in the data manager, the auto selection mode will automatically select a fitting segmentation. Clicking on the segmentation selection widget a drop down list will open, containing all suitable segmentations for the selected reference dataset available in the data manager. \section org_mitk_views_segmentationlayers Segmentation layers For each multilabel segmentation different layers can be added or deleted. The layers can be used independently and layers can be switched using the left and right arrows. A layer is a set of labels that occupy a non-overlapping anatomical space. The best way to describe them is by a real use case: Imagine you are working on a radiotherapy planning application. In the first layer of your segmentation session, you would like to trace the contours of the liver and neighboring organs. You can accommodate all these segmentations in separate labels because they all occupy different anatomical regions and do not overlap. Now say you would like to segment the arteries and veins inside the liver. If you don't trace them in a different layer, you will overwrite the previous ones. You may also need a third layer for segmenting the different irrigation territories in the liver and a fourth layer to contain the lesion you would like to treat. \imageMacro{"QmitkSegmentation_LayerSelection.png","Layer selection",12} \section org_mitk_views_segmentationlabels Segmentation labels For each layer, one or more labels can be added. Pressing the double arrow on the right, all created labels are shown in the 'Label Table'. The following label properties are available:
  • Name:
  • the name of the label. Can be a predefined one or any other.
  • Locked:
  • whether the label is locked or editable. A locked label cannot be overwritten by another.
  • Color:
  • the color of the label.
  • Visible:
  • whether the label is currently visible or hidden.
\imageMacro{"QmitkSegmentation_LabelTable.png","The 'Label Table' shows all labels in the current segmentation session",12} The 'New Label' button can be used to add a new label. This will automatically add a new label with a distinct name and color to the list of available labels.\n In the current implementation of the plugin, the maximum number of labels is restricted to 255. If you need more, you will have to create a new segmentation session. \subsection org_mitk_views_segmentationlabelsuggestions Label name and color suggestions When renaming labels or creating new labels with enforced manual naming in the Segmentation preferences, entering names is supported by auto-completion for common label names. The list of predefined label names and colors for the auto-completion feature can be either extented or replaced by a custom list of label name and color suggestions. This custom list must be specified as a JSON file, just containing an array of objects, each with a mandatory "name" string and an optional "color" string. The JSON file can be set in the Segmentation preferences as well as a few options on how to apply these suggestions. \subsection org_mitk_views_segmentationlabelpresets Saving and loading label set presets Label set presets are useful to share a certain style or scheme between different segmentation sessions or to provide templates for new segmentation sessions. The properties of all labels in all layers like their names, colors, and visibilities are saved as a label set preset by clicking on the 'Save label set preset' button. Label set presets are applied to any segmentation session by clicking on the 'Load label set preset' button. If a label for a certain value already exists, its properties are overridden by the preset. If a label for a certain value does not yet exist, an empty label with the label properties of the preset is created. The actual segmentations of labels are unaffected as label set presets only store label properties. \subsubsection org_mitk_views_segmentationdefaultlabelpresets Applying label set presets by default If you work on a repetetive segmentation task, manually loading the same label set preset for each and every new segmentation can be tedious. To streamline your workflow, you can set a default label set preset in the Segmentation preferences (Ctrl+P). When set, this label set preset will be applied to all new segmentations instead of creating the default red "New label 1" label. \subsection org_mitk_views_segmentationlabelsearch Searching for a label It may happen that many labels (e.g. > 200) are present in a segmentation session and therefore manual searching can be time-consuming. The 'Label Search' edit box allows for quickly finding a label by providing assistance for label name completion. If the label is found, it will become the active one after pressing 'enter'. To start editing a label needs to be activated by clicking on the corresponding row in the 'Label Table'. Only one label can be active at the time. Then the segmentation tools in the toolbox can be used for mask generation. \subsection org_mitk_views_multilabelsegmentationoperationsonlabels Operations on labels Depending on the selection in the 'Label Table', several actions are offered: \subsubsection org_mitk_views_segmentationoperationssingleselection Operations with single label selection Right-clicking on any label opens a pop-up menu that offers the following actions to be performed on the selected label:
  • Rename...
  • : change the name and / or color of the selected label.
  • Remove...
  • : delete the selected label.
  • Erase...
  • : only clear the contents of the selected label.
  • Merge...
  • : merge two labels by selecting a second label.
  • Random color
  • : assign a random color to the label.
  • View only
  • : make all labels except the current selected label invisible.
  • View/Hide all
  • : make all labels visible / invisible
  • Lock/Unlock all
  • : lock or unlock all labels.
  • Create surface
  • : generate a surface out of the selected label.
  • Create mask
  • : generate a mask out of the selected label. A mask is a binary image with "1" inside and "0" outside.
  • Create cropped mask
  • : generate a binary mask out of the selected label. Crop changes the extent of the resulting image to the extent of the label.
\imageMacro{"QmitkSegmentation_OperationsSingleSelection.png","Context menu for single label selection",12} \subsubsection org_mitk_views_segmentationoperationsmultiselection Operations with multiple label selection Shift-clickink on multiple labels allows to select more than one label. If more than one label is selected, different options will appear in the menu:
  • Merge selection on current label
  • : transfer the contents of the selected labels in the 'Label Table' into the current one.
  • Remove selected labels
  • : delete the selected labels.
  • Erase selected labels
  • : only clear the contents of the selected labels.
\imageMacro{"QmitkSegmentation_OperationsMultiSelection.png","Context menu for multiple label selection",12} \section org_mitk_views_segmentationtooloverview Segmentation tool overview MITK offers a comprehensive set of slice-based 2D and (semi-)automated 3D segmentation tools. The manual 2D tools require some user interaction and can only be applied to a single image slice whereas the 3D tools operate on the whole image. The 3D tools usually only require a small amount of user interaction, i.e. placing seed points or setting / adjusting parameters. You can switch between the different toolsets by selecting the 2D or 3D tab in the segmentation view. \imageMacro{QmitkSegmentation_ToolOverview.png,"An overview of the existing 2D and 3D tools in MITK.",5.50} \section org_mitk_views_segmentation2dsegmentation 2D segmentation tools With 2D manual contouring you define which voxels are part of the segmentation and which are not. This allows you to create segmentations of any structures of interest in an image. You can also use manual contouring to correct segmentations that result from sub-optimal automatic methods. The drawback of manual contouring is that you might need to define contours on many 2D slices. However, this is mitigated by the interpolation feature, which will make suggestions for a segmentation. To start using one of the editing tools, click its button from the displayed toolbox. The selected editing tool will be active and its corresponding button will stay pressed until you click the button again. Selecting a different tool also deactivates the previous one.\n If you have to delineate a lot of images, shortcuts to switch between tools becomes convenient. For that, just hit the first letter of each tool to activate it (A for Add, S for Subtract, etc.). All of the editing tools work by the same principle: using the mouse (left button) to click anywhere in a 2D window (any of the orientations axial, sagittal, or coronal), moving the mouse while holding the mouse button and releasing the button to finish the editing action. Multi-step undo and redo is fully supported by all editing tools by using the application-wide undo / redo buttons in the toolbar. Remark: Clicking and moving the mouse in any of the 2D render windows will move the crosshair that defines what part of the image is displayed. This behavior is disabled as long as any of the manual segmentation tools are active - otherwise you might have a hard time concentrating on the contour you are drawing. \subsection org_mitk_views_segmentationaddsubtracttools Add and subtract tools \imageMacro{QmitkSegmentation_IMGIconAddSubtract.png,"Add and subtract tools",7.70} Use the left mouse button to draw a closed contour. When releasing the mouse button, the contour will be added (Add tool) to or removed (Subtract tool) from the current segmentation. Adding and subtracting voxels can be iteratively repeated for the same segmentation. Holding CTRL / CMD while drawing will invert the current tool's behavior (i.e. instead of adding voxels, they will be subtracted). \subsection org_mitk_views_segmentationlassotool Lasso tool \imageMacro{QmitkSegmentation_Lasso.png,"Lasso tool",7.70} The tool is a more advanced version of the add/substract tool. It offers you the following features:
  1. Generating a polygon segmentation (click left mouse button to set ancor point)
  2. Freehand contouring (like the add tool; press left mouse button while moving the mouse)
  3. Move ancor points (select an ancor point, press left mouse button while moving the mouse)
  4. Add new ancor points (press CTRL while click left mouse to add an ancor to the contour)
  5. Delete an ancor point (press Del while ancor point is selected)
  6. Segmentation can be added to the label (Add mode) or substracted (Substract mode)
To start a segmentation double left click where the first ancor point should be. To end the segmentation double left click where the last ancor point should be. Please note that:
  • feature 3-6 are only available, if auto confirm is *not* activated
  • feature 3-5 is not available for freehand contour segments
\subsection org_mitk_views_segmentationpaintwipetools Paint and wipe tools \imageMacro{QmitkSegmentation_IMGIconPaintWipe.png,"Paint and wipe tools",7.68} Use the Size slider to change the radius of the round paintbrush tool. Move the mouse in any 2D window and press the left button to draw or erase pixels. Holding CTRL / CMD while drawing will invert the current tool's behavior (i.e. instead of painting voxels, they will be wiped). \subsection org_mitk_views_segmentationregiongrowingtool Region growing tool \imageMacro{QmitkSegmentation_IMGIconRegionGrowing.png,"Region growing tool",3.81} Click at one point in a 2D slice widget to add an image region to the segmentation with the region growing tool. Region Growing selects all pixels around the mouse cursor that have a similar gray value as the pixel below the mouse cursor. This allows to quickly create segmentations of structures that have a good contrast to surrounding tissue. The tool operates based on the current level window, so changing the level window to optimize the contrast for the ROI is encouraged. Moving the mouse up / down is different from left / right: Moving up the cursor while holding the left mouse button widens the range for the included grey values; moving it down narrows it. Moving the mouse left and right will shift the range. The tool will select more or less pixels, corresponding to the changing gray value range. \if THISISNOTIMPLEMENTEDATTHEMOMENT A common issue with region growing is the so called "leakage" which happens when the structure of interest is connected to other pixels, of similar gray values, through a narrow "bridge" at the border of the structure. The Region Growing tool comes with a "leakage detection/removal" feature. If leakage happens, you can left-click into the leakage region and the tool will try to automatically remove this region (see illustration below). \imageMacro{QmitkSegmentation_Leakage.png,"Leakage correction feature of the region growing tool",11.28} \endif \subsection org_mitk_views_segmentationfilltool Fill tool \imageMacro{QmitkSegmentation_IMGIconFill.png,"Fill tool",3.81} -Left-click inside a segmentation with holes to completely fill all holes. Left-click inside a hole to fill only this specific hole. +Left-click inside a region/segmentation to flood fill all connected pixels that have the same label with the active label. This tool will only work on regions of unlocked labels or on regions that are not labeled at all. \subsection org_mitk_views_segmentationerasetool Erase tool - \imageMacro{QmitkSegmentation_IMGIconErase.png,"Erase tool",3.79} This tool removes a connected part of pixels that form a segmentation. -You may use it to remove single segmentations (left-click on specific segmentation) or to clear a whole slice at once (left-click outside a segmentation). +You may use it to remove single segmented regions (left-click on specific segmentation) or to clear a whole slice at once (left-click at the non-labeled background). +This tool will only work and regions of unlocked labels or on regions of the active label. + +\subsection org_mitk_views_segmentationclosetool Close tool +\imageMacro{QmitkSegmentation_IMGIconClose.png,"Close tool",3.79} + +Left-click inside the region/segmentation to fill all "holes" (pixels labelled with another label or no label) inside the region. +Therefore this tool behaves like a local closing operation. This tool will not work, when a non-labeled region is selected and holes of locked labels will not be filled. +\remark This tool always uses the label of the selected region (even if this label is not the active label). Therefore you can use this tool on regions of the active label and of none locked labels (without the need to change the active label). \subsection org_mitk_views_segmentationlivewiretool Live wire tool \imageMacro{QmitkSegmentation_IMGIconLiveWire.png,"Live wire tool",3.01} The Live Wire Tool acts as a magnetic lasso with a contour snapping to edges of objects. \imageMacro{QmitkSegmentation_IMGLiveWireUsage.PNG,"Steps for using the Live Wire Tool",16.00} The tool handling is the same like the Lasso tool (see for more info), except it generates live wire contours instead of straight lines. \subsection org_mitk_views_segmentationinterpolation 2D and 3D Interpolation Creating segmentations using 2D manual contouring for large image volumes may be very time-consuming, because structures of interest may cover a large range of slices. Note: Interpolation is currently disabled for segmentations containing more than one label. The segmentation view offers two helpful features to mitigate this drawback:
  • 2D Interpolation
  • 3D Interpolation
The 2D Interpolation creates suggestions for a segmentation whenever you have a slice that
  • has got neighboring slices with segmentations (these do not need to be direct neighbors but could also be a couple of slices away) AND
  • is completely clear of a manual segmentation, i.e. there will be no suggestion if there is even only a single pixel of segmentation in the current slice.
\imageMacro{QmitkSegmentation_2DInterpolation.png,"2D interpolation usage",3.01} Interpolated suggestions are displayed as outlines, until you confirm them as part of the segmentation. To confirm single slices, click the Confirm for single slice button below the toolbox. You may also review the interpolations visually and then accept all of them at once by selecting Confirm for all slices. The 3D interpolation creates suggestions for 3D segmentations. That means if you start contouring, from the second contour onwards, the surface of the segmented area will be interpolated based on the given contour information. The interpolation works with all available manual tools. Please note that this is currently a pure mathematical interpolation, i.e. image intensity information is not taken into account. With each further contour the interpolation result will be improved, but the more contours you provide the longer the recalculation will take. To achieve an optimal interpolation result and in this way a most accurate segmentation you should try to describe the surface with sparse contours by segmenting in arbitrary oriented planes. The 3D interpolation is not meant to be used for parallel slice-wise segmentation, but rather segmentations in i.e. the axial, coronal and sagittal plane. \imageMacro{QmitkSegmentation_3DInterpolationWrongRight.png,"3D interpolation usage",16.00} You can accept the interpolation result by clicking the Confirm-button below the tool buttons. In this case the 3D interpolation will be deactivated automatically so that the result can be post-processed without any interpolation running in the background. Additional to the surface, black contours are shown in the 3D render window, which mark all the drawn contours used for the interpolation. You can navigate between the drawn contours by clicking on the corresponding position nodes in the data manager which are stored as sub-nodes of the selected segmentation. If you do not want to see these nodes just uncheck the Show Position Nodes checkbox and these nodes will be hidden. If you want to delete a drawn contour we recommend to use the Erase-Tool since undo / redo is not yet working for 3D interpolation. The current state of the 3D interpolation can be saved across application restart. For that, just click on save project during the interpolation is active. After restarting the application and load your project you can click on "Reinit Interpolation" within the 3D interpolation GUI area. \section org_mitk_views_segmentation3dsegmentation 3D segmentation tools The 3D tools operate on the whole image and require usually a small amount of interaction like placing seed-points or specifying certain parameters. All 3D tools provide an immediate segmentation feedback, which is displayed as a transparent green overlay. For accepting a preview you have to press the Confirm button of the selected tool. The following 3D tools are available: \subsection org_mitk_views_segmentation3dthresholdtool 3D Threshold tool The thresholding tool simply applies a 3D threshold to the patient image. All pixels with values equal or above the selected threshold are labeled as part of the segmentation. You can change the threshold by either moving the slider of setting a certain value in the spinbox. \imageMacro{QmitkSegmentation_3DThresholdTool.png,"3D Threshold tool",10.00} \subsection org_mitk_views_segmentation3dulthresholdTool 3D upper / lower threshold tool The Upper/Lower Thresholding tool works similar to the simple 3D threshold tool but allows you to define an upper and lower threshold. All pixels with values within this threshold interval will be labeled as part of the segmentation. \imageMacro{QmitkSegmentation_3DULThresholdTool.png,"3D upper / lower threshold tool",10.00} \subsection org_mitk_views_segmentation3dotsutool 3D Otsu tool The 3D Otsu tool provides a more sophisticated thresholding algorithm. It allows you to define a number of regions. Based on the image histogram the pixels will then be divided into different regions. The more regions you define the longer the calculation will take. You can select afterwards which of these regions you want to confirm as segmentation. \imageMacro{QmitkSegmentation_3DOtsuTool.png,"3D Otsu tool",10.00} \subsection org_mitk_views_segmentation3drgtool 3D Region growing tool The 3D Region Growing tool works similar to the 2D pendant. At the beginning you have to place a seedpoint and define a threshold interval. If you press Run Segmentation a preview is calculated. By moving the Adapt region growing slider you can interactively adapt the segmentation result. \imageMacro{QmitkSegmentation_3DRGTool.png,"3D Region growing tool",10.00} \subsection org_mitk_views_segmentationpickingtool Picking Tool The Picking tool offers two modes that allow you to manipulate "islands" within your segmentation. This is especially useful if e.g. a thresholding provided you with several areas within your image but you are just interested in one special region. - Picking mode: Allows you to select certain "islands". When the pick is confirmed, the complete content of the active label will be removed except the pick. This mode is beneficial if you have a lot segmentation noise and want to pick the relevant parts and dismiss the rest. Hint: You can also pick from other labels, but this will only work if these labels are unlocked. - Relabel mode: Allows you to select certain "islands". When the pick is confirmed, it will be relabeled and added to the active label content. Hint: This mode ignores the locks of other labels, hence you do not need to unlock them explicitly. \imageMacro{QmitkSegmentation_PickingTool.png,"Picking tool",10.00} \subsection org_mitk_views_segmentationnnUNetTool nnU-Net Tool (Ubuntu only) \imageMacro{QmitkSegmentation_nnUnetTool.png,"nnUNet tool",10.00} This tool provides a GUI to the deep learning-based segmentation algorithm called the nnUNet. With this tool, you can get a segmentation mask predicted for the loaded image in MITK. Be ready with the pre-trained weights (a.k.a RESULTS_FOLDER) for your organ or task concerned, before using the tool. For a detailed explanation of the parameters and pre-trained weights folder structure etc., please refer to https://github.com/MIC-DKFZ/nnUNet.
Remark: The tool assumes that you have a Python3 environment with nnUNet (pip) installed. Your machine should be also equipped with a CUDA enabled GPU. \subsubsection org_mitk_views_segmentationnnUNetToolWorkflow Workflow: -# Select the "Python Path" drop-down to see if MITK has automatically detected other Python environments. Click on a fitting environment for the nnUNet inference or click "Select" in the dropdown to choose an unlisted python environment. Note that, while selecting an arbitrary environment folder, only select the base folder, e.g. "myenv". No need to select all the way until "../myenv/bin/python", for example. -# Click on the "nnUNet Results Folder" directory icon to navigate to the results folder on your hard disk. This is equivalent to setting the RESULTS_FOLDER environment variable. If your results folder is as per the nnUNet required folder structure, the configuration, trainers, tasks and folds are automatically parsed and correspondingly loaded in the drop-down boxes as shown below. Note that MITK automatically checks for the RESULTS_FOLDER environment variable value and, if found, auto parses that directory when the tool is started. \imageMacro{QmitkSegmentation_nnUNet_Settings.png,"nnUNet Segmentation Settings",10} -# Choose your required Task-Configuration-Trainer-Planner-Fold parameters, sequentially. By default, all entries are selected inside the "Fold" dropdown (shown: "All"). Note that, even if you uncheck all entries from the "Fold" dropdown (shown: "None"), then too, all folds would be considered for inferencing. -# For ensemble predictions, you will get the option to select parameters irrespective on postprocessing files available in the ensembles folder of RESULTS_FOLDER. Note that, if a postprocessing json file exists for the selected combination then it will used for ensembling, by default. To choose not to, uncheck the "Use PostProcessing JSON" in the "Advanced" section. \imageMacro{QmitkSegmentation_nnUNet_ensemble.png,"nnUNet Segmentation Settings",10} -# If your task is trained with multi-modal inputs, then "Multi-Modal" checkbox is checked and the no.of modalities are preloaded and shown next to "Required Modalities". Instantly, as much node selectors with corresponding modality names should appear below to select the Data Manager along including a selector with preselected with the reference node. Now, select the image nodes in the node selectors accordingly for accurate inferencing. \imageMacro{QmitkSegmentation_nnUNet_multimodal.png,"nnUNet Multi Modal Settings",10.00} -# Click on "Preview". -# In the "Advanced" section, you can also activate other options like "Mixed Precision" and "Enable Mirroring" (for test time data augmentation) pertaining to nnUNet. \imageMacro{QmitkSegmentation_nnUNet_Advanced.png,"nnUNet Advanced Settings",10.00} -# Use "Advanced" > "GPU Id" combobox to change the preferred GPU for inferencing. This is internally equivalent to setting the CUDA_VISIBLE_DEVICES environment variable. -# Every inferred segmentation is cached to prevent a redundant computation. In case, a user doesn't wish to cache a Preview, uncheck the "Enable Caching" in the "Advanced" section. This will ensure that the current parameters will neither be checked against the existing cache nor a segmentation be loaded from it when Preview is clicked. -# You may always clear all the cached segmentations by clicking "Clear Cache" button. \subsubsection org_mitk_views_segmentationnnUNetToolMisc Miscellaneous: -# In case you want to reload/reparse the folders in the "nnUNet Results Folder", eg. after adding new tasks into it, you may do so without reselecting the folder again by clicking the "Refresh Results Folder" button. -# The "Advanced" > "GPU Id" combobox lists the Nvidia GPUs available by parsing the nvidia-smi utility output. In case your machine has Nvidia CUDA enabled GPUs but the nvidia-smi fails for some reason, the "GPU Id" combobox will show no entries. In such a situation, it's still possible to execute inferencing by manually entering the preferred GPU Id, eg. 0 in the combobox. -# The "Advanced" > "Available Models" lists the available pre-trained tasks for download. Make sure you have internet connection. Then, choose a Task from the dropdown and click the Download button. The pre-trained models for the selected Task will be downloaded and placed to the RESULTS_FOLDER directory automatically. -# In the RESULTS_FOLDER directory, inside the trainer-planner folder of every task, MITK keeps a "mitk_export.json" file for fast loading for multi-modal information. It is recommended not to delete this file(s) for a fast responsive UI. Tip: If multi-modal information shown on MITK is not correct for a given task, you may modify this JSON file and try again. \section org_mitk_views_segmentationpostprocessing Additional things you can do with segmentations Segmentations are never an end in themselves. Consequently, the segmentation view adds a couple of "post-processing" actions, accessible through the context-menu of the data manager. \imageMacro{QmitkSegmentation_IMGDataManagerContextMenu.png,"Context menu items for segmentations",10.58}
  • Create polygon %model applies the marching cubes algorithm to the segmentation. This polygon %model can be used for visualization in 3D or other applications such as stereolithography (3D printing).
  • Create smoothed polygon %model uses smoothing in addition to the marching cubes algorithm, which creates models that do not follow the exact outlines of the segmentation, but look smoother.
  • Autocrop can save memory. Manual segmentations have the same extent as the patient image, even if the segmentation comprises only a small sub-volume. This invisible and meaningless margin is removed by autocropping.
\section org_mitk_views_segmentationof3dtimages Segmentation of 3D+t images For segmentation of 3D+t images, some tools give you the option to choose between creating dynamic and static masks.
  • Dynamic masks can be created on each time frame individually.
  • Static masks will be defined on one time frame and will be the same for all other time frames.
In general, segmentation is applied on the time frame that is selected when execution is performed. If you alter the time frame, the segmentation preview is adapted. \section org_mitk_views_segmentationtechnicaldetail Technical information for developers For technical specifications see \subpage QmitkSegmentationTechnicalPage and for information on the extensions of the tools system \subpage toolextensions. */ diff --git a/Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentation_IMGIconClose.png b/Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentation_IMGIconClose.png new file mode 100644 index 0000000000..c674c53dea Binary files /dev/null and b/Plugins/org.mitk.gui.qt.segmentation/documentation/UserManual/QmitkSegmentation_IMGIconClose.png differ diff --git a/Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp b/Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp index 62f06eb5e3..7d55bfbbf2 100644 --- a/Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp +++ b/Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp @@ -1,1009 +1,1009 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkSegmentationView.h" #include "mitkPluginActivator.h" // blueberry #include // mitk #include #include #include #include #include #include #include #include #include #include #include #include #include // Qmitk #include #include #include // us #include #include // Qt #include #include #include #include const std::string QmitkSegmentationView::VIEW_ID = "org.mitk.views.segmentation"; QmitkSegmentationView::QmitkSegmentationView() : m_Parent(nullptr) , m_Controls(nullptr) , m_RenderWindowPart(nullptr) , m_ToolManager(nullptr) , m_ReferenceNode(nullptr) , m_WorkingNode(nullptr) , m_DrawOutline(true) , m_SelectionMode(false) , m_MouseCursorSet(false) , m_DefaultLabelNaming(true) { auto isImage = mitk::TNodePredicateDataType::New(); auto isDwi = mitk::NodePredicateDataType::New("DiffusionImage"); auto isDti = mitk::NodePredicateDataType::New("TensorImage"); auto isOdf = mitk::NodePredicateDataType::New("OdfImage"); auto isSegment = mitk::NodePredicateDataType::New("Segment"); auto validImages = mitk::NodePredicateOr::New(); validImages->AddPredicate(mitk::NodePredicateAnd::New(isImage, mitk::NodePredicateNot::New(isSegment))); validImages->AddPredicate(isDwi); validImages->AddPredicate(isDti); validImages->AddPredicate(isOdf); auto isBinary = mitk::NodePredicateProperty::New("binary", mitk::BoolProperty::New(true)); auto isMask = mitk::NodePredicateAnd::New(isBinary, isImage); auto validSegmentations = mitk::NodePredicateOr::New(); validSegmentations->AddPredicate(mitk::TNodePredicateDataType::New()); validSegmentations->AddPredicate(isMask); m_SegmentationPredicate = mitk::NodePredicateAnd::New(); m_SegmentationPredicate->AddPredicate(validSegmentations); m_SegmentationPredicate->AddPredicate(mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("helper object"))); m_SegmentationPredicate->AddPredicate(mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("hidden object"))); m_ReferencePredicate = mitk::NodePredicateAnd::New(); m_ReferencePredicate->AddPredicate(validImages); m_ReferencePredicate->AddPredicate(mitk::NodePredicateNot::New(m_SegmentationPredicate)); m_ReferencePredicate->AddPredicate(mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("helper object"))); m_ReferencePredicate->AddPredicate(mitk::NodePredicateNot::New(mitk::NodePredicateProperty::New("hidden object"))); } QmitkSegmentationView::~QmitkSegmentationView() { if (nullptr != m_Controls) { OnLooseLabelSetConnection(); // deactivate all tools m_ToolManager->ActivateTool(-1); // removing all observers from working data for (NodeTagMapType::iterator dataIter = m_WorkingDataObserverTags.begin(); dataIter != m_WorkingDataObserverTags.end(); ++dataIter) { (*dataIter).first->GetProperty("visible")->RemoveObserver((*dataIter).second); } m_WorkingDataObserverTags.clear(); // removing all observers from reference data for (NodeTagMapType::iterator dataIter = m_ReferenceDataObserverTags.begin(); dataIter != m_ReferenceDataObserverTags.end(); ++dataIter) { (*dataIter).first->GetProperty("visible")->RemoveObserver((*dataIter).second); } m_ReferenceDataObserverTags.clear(); mitk::RenderingManager::GetInstance()->RemoveObserver(m_RenderingManagerObserverTag); ctkPluginContext* context = mitk::PluginActivator::getContext(); ctkServiceReference ppmRef = context->getServiceReference(); mitk::PlanePositionManagerService* service = context->getService(ppmRef); service->RemoveAllPlanePositions(); context->ungetService(ppmRef); m_ToolManager->SetReferenceData(nullptr); m_ToolManager->SetWorkingData(nullptr); } delete m_Controls; } /**********************************************************************/ /* private Q_SLOTS */ /**********************************************************************/ void QmitkSegmentationView::OnReferenceSelectionChanged(QList nodes) { m_ToolManager->ActivateTool(-1); // Remove observer if one was registered to the reference node auto finding = m_ReferenceDataObserverTags.find(m_ReferenceNode); if (finding != m_ReferenceDataObserverTags.end()) { m_ReferenceNode->GetProperty("visible")->RemoveObserver(m_ReferenceDataObserverTags[m_ReferenceNode]); m_ReferenceDataObserverTags.erase(m_ReferenceNode); } if (nodes.empty()) { m_Controls->workingNodeSelector->SetNodePredicate(m_SegmentationPredicate); m_ReferenceNode = nullptr; m_ToolManager->SetReferenceData(m_ReferenceNode); this->UpdateGUI(); return; } m_ReferenceNode = nodes.first(); m_ToolManager->SetReferenceData(m_ReferenceNode); if (m_ReferenceNode.IsNotNull()) { // set a predicate such that a segmentation fits the selected reference image geometry auto segPredicate = mitk::NodePredicateAnd::New(m_SegmentationPredicate.GetPointer(), mitk::NodePredicateSubGeometry::New(m_ReferenceNode->GetData()->GetGeometry())); m_Controls->workingNodeSelector->SetNodePredicate(segPredicate); if (m_SelectionMode) { // hide all image nodes to later show only the automatically selected ones mitk::DataStorage::SetOfObjects::ConstPointer imageNodes = this->GetDataStorage()->GetSubset(m_ReferencePredicate); for (mitk::DataStorage::SetOfObjects::const_iterator iter = imageNodes->begin(); iter != imageNodes->end(); ++iter) { (*iter)->SetVisibility(false); } } m_ReferenceNode->SetVisibility(true); auto command = itk::SimpleMemberCommand::New(); command->SetCallbackFunction(this, &QmitkSegmentationView::ValidateSelectionInput); m_ReferenceDataObserverTags[m_ReferenceNode] = m_ReferenceNode->GetProperty("visible")->AddObserver(itk::ModifiedEvent(), command); } this->UpdateGUI(); } void QmitkSegmentationView::OnSegmentationSelectionChanged(QList nodes) { m_ToolManager->ActivateTool(-1); // Remove observer if one was registered auto finding = m_WorkingDataObserverTags.find(m_WorkingNode); if (finding != m_WorkingDataObserverTags.end()) { m_WorkingNode->GetProperty("visible")->RemoveObserver(m_WorkingDataObserverTags[m_WorkingNode]); m_WorkingDataObserverTags.erase(m_WorkingNode); } if (nodes.empty()) { m_WorkingNode = nullptr; m_ToolManager->SetWorkingData(m_WorkingNode); this->UpdateGUI(); return; } if (m_ReferenceNode.IsNull()) { this->UpdateGUI(); return; } mitk::Image::ConstPointer referenceImage = dynamic_cast(m_ReferenceNode->GetData()); if (referenceImage.IsNull()) { this->UpdateGUI(); return; } m_WorkingNode = nodes.first(); m_ToolManager->SetWorkingData(m_WorkingNode); if (m_WorkingNode.IsNotNull()) { if (m_SelectionMode) { // hide all segmentation nodes to later show only the selected ones mitk::DataStorage::SetOfObjects::ConstPointer segmentationNodes = this->GetDataStorage()->GetSubset(m_SegmentationPredicate); for (mitk::DataStorage::SetOfObjects::const_iterator iter = segmentationNodes->begin(); iter != segmentationNodes->end(); ++iter) { (*iter)->SetVisibility(false); } } m_WorkingNode->SetVisibility(true); this->OnEstablishLabelSetConnection(); m_Controls->labelSetWidget->ResetAllTableWidgetItems(); auto command = itk::SimpleMemberCommand::New(); command->SetCallbackFunction(this, &QmitkSegmentationView::ValidateSelectionInput); m_WorkingDataObserverTags[m_WorkingNode] = m_WorkingNode->GetProperty("visible")->AddObserver(itk::ModifiedEvent(), command); this->InitializeRenderWindows(referenceImage->GetTimeGeometry(), mitk::RenderingManager::REQUEST_UPDATE_ALL, false); } this->UpdateGUI(); } void QmitkSegmentationView::OnVisibilityShortcutActivated() { if (m_WorkingNode.IsNull()) { return; } bool isVisible = false; m_WorkingNode->GetBoolProperty("visible", isVisible); m_WorkingNode->SetVisibility(!isVisible); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkSegmentationView::OnLabelToggleShortcutActivated() { if (m_WorkingNode.IsNull()) { return; } auto workingImage = dynamic_cast(m_WorkingNode->GetData()); if (nullptr == workingImage) { return; } this->WaitCursorOn(); workingImage->GetActiveLabelSet()->SetNextActiveLabel(); workingImage->Modified(); this->WaitCursorOff(); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkSegmentationView::OnNewSegmentation() { m_ToolManager->ActivateTool(-1); if (m_ReferenceNode.IsNull()) { MITK_ERROR << "'Create new segmentation' button should never be clickable unless a reference image is selected."; return; } mitk::Image::ConstPointer referenceImage = dynamic_cast(m_ReferenceNode->GetData()); if (referenceImage.IsNull()) { QMessageBox::information( m_Parent, "New segmentation", "Please load and select an image before starting some action."); return; } if (referenceImage->GetDimension() <= 1) { QMessageBox::information( m_Parent, "New segmentation", "Segmentation is currently not supported for 2D images"); return; } auto segTemplateImage = referenceImage; if (referenceImage->GetDimension() > 3) { QmitkStaticDynamicSegmentationDialog dialog(m_Parent); dialog.SetReferenceImage(referenceImage.GetPointer()); dialog.exec(); segTemplateImage = dialog.GetSegmentationTemplate(); } mitk::DataNode::Pointer newSegmentationNode; try { this->WaitCursorOn(); newSegmentationNode = mitk::LabelSetImageHelper::CreateNewSegmentationNode(m_ReferenceNode, segTemplateImage); this->WaitCursorOff(); } catch (mitk::Exception& e) { this->WaitCursorOff(); MITK_ERROR << "Exception caught: " << e.GetDescription(); QMessageBox::warning(m_Parent, "New segmentation", "Could not create a new segmentation."); return; } auto newLabelSetImage = dynamic_cast(newSegmentationNode->GetData()); if (nullptr == newLabelSetImage) { // something went wrong return; } const auto labelSetPreset = this->GetDefaultLabelSetPreset(); if (labelSetPreset.empty() || !mitk::LabelSetIOHelper::LoadLabelSetImagePreset(labelSetPreset, newLabelSetImage)) { auto newLabel = mitk::LabelSetImageHelper::CreateNewLabel(newLabelSetImage); if (!m_DefaultLabelNaming) { QmitkNewSegmentationDialog dialog(m_Parent); dialog.SetName(QString::fromStdString(newLabel->GetName())); dialog.SetColor(newLabel->GetColor()); if (QDialog::Rejected == dialog.exec()) return; auto name = dialog.GetName(); if (!name.isEmpty()) newLabel->SetName(name.toStdString()); newLabel->SetColor(dialog.GetColor()); } newLabelSetImage->GetActiveLabelSet()->AddLabel(newLabel); } if (!this->GetDataStorage()->Exists(newSegmentationNode)) { this->GetDataStorage()->Add(newSegmentationNode, m_ReferenceNode); } if (m_ToolManager->GetWorkingData(0)) { m_ToolManager->GetWorkingData(0)->SetSelected(false); } newSegmentationNode->SetSelected(true); m_Controls->workingNodeSelector->SetCurrentSelectedNode(newSegmentationNode); } std::string QmitkSegmentationView::GetDefaultLabelSetPreset() const { auto labelSetPreset = mitk::BaseApplication::instance().config().getString(mitk::BaseApplication::ARG_SEGMENTATION_LABELSET_PRESET.toStdString(), ""); if (labelSetPreset.empty()) labelSetPreset = m_LabelSetPresetPreference.toStdString(); return labelSetPreset; } void QmitkSegmentationView::OnManualTool2DSelected(int id) { this->ResetMouseCursor(); mitk::StatusBar::GetInstance()->DisplayText(""); if (id >= 0) { std::string text = "Active Tool: \""; text += m_ToolManager->GetToolById(id)->GetName(); text += "\""; mitk::StatusBar::GetInstance()->DisplayText(text.c_str()); us::ModuleResource resource = m_ToolManager->GetToolById(id)->GetCursorIconResource(); this->SetMouseCursor(resource, 0, 0); } } void QmitkSegmentationView::OnShowMarkerNodes(bool state) { mitk::SegTool2D::Pointer manualSegmentationTool; unsigned int numberOfExistingTools = m_ToolManager->GetTools().size(); for (unsigned int i = 0; i < numberOfExistingTools; i++) { manualSegmentationTool = dynamic_cast(m_ToolManager->GetToolById(i)); if (nullptr == manualSegmentationTool) { continue; } manualSegmentationTool->SetShowMarkerNodes(state); } } void QmitkSegmentationView::OnLayersChanged() { this->OnEstablishLabelSetConnection(); m_Controls->labelSetWidget->ResetAllTableWidgetItems(); } void QmitkSegmentationView::OnShowLabelTable(bool value) { m_Controls->labelSetWidget->setVisible(value); } void QmitkSegmentationView::OnGoToLabel(const mitk::Point3D& pos) { if (m_RenderWindowPart) { m_RenderWindowPart->SetSelectedPosition(pos); } } void QmitkSegmentationView::OnLabelSetWidgetReset() { this->ValidateSelectionInput(); } /**********************************************************************/ /* private */ /**********************************************************************/ void QmitkSegmentationView::CreateQtPartControl(QWidget* parent) { m_Parent = parent; m_Controls = new Ui::QmitkSegmentationViewControls; m_Controls->setupUi(parent); // *------------------------ // * SHORTCUTS // *------------------------ QShortcut* visibilityShortcut = new QShortcut(QKeySequence(Qt::CTRL | Qt::Key::Key_H), parent); connect(visibilityShortcut, &QShortcut::activated, this, &QmitkSegmentationView::OnVisibilityShortcutActivated); QShortcut* labelToggleShortcut = new QShortcut(QKeySequence(Qt::CTRL | Qt::Key::Key_L, Qt::CTRL | Qt::Key::Key_I), parent); connect(labelToggleShortcut, &QShortcut::activated, this, &QmitkSegmentationView::OnLabelToggleShortcutActivated); // *------------------------ // * DATA SELECTION WIDGETS // *------------------------ m_Controls->referenceNodeSelector->SetDataStorage(GetDataStorage()); m_Controls->referenceNodeSelector->SetNodePredicate(m_ReferencePredicate); m_Controls->referenceNodeSelector->SetInvalidInfo("Select an image"); m_Controls->referenceNodeSelector->SetPopUpTitel("Select an image"); m_Controls->referenceNodeSelector->SetPopUpHint("Select an image that should be used to define the geometry and bounds of the segmentation."); m_Controls->workingNodeSelector->SetDataStorage(GetDataStorage()); m_Controls->workingNodeSelector->SetNodePredicate(m_SegmentationPredicate); m_Controls->workingNodeSelector->SetInvalidInfo("Select a segmentation"); m_Controls->workingNodeSelector->SetPopUpTitel("Select a segmentation"); m_Controls->workingNodeSelector->SetPopUpHint("Select a segmentation that should be modified. Only segmentation with the same geometry and within the bounds of the reference image are selected."); connect(m_Controls->referenceNodeSelector, &QmitkAbstractNodeSelectionWidget::CurrentSelectionChanged, this, &QmitkSegmentationView::OnReferenceSelectionChanged); connect(m_Controls->workingNodeSelector, &QmitkAbstractNodeSelectionWidget::CurrentSelectionChanged, this, &QmitkSegmentationView::OnSegmentationSelectionChanged); // *------------------------ // * TOOLMANAGER // *------------------------ m_ToolManager = mitk::ToolManagerProvider::GetInstance()->GetToolManager(); m_ToolManager->SetDataStorage(*(this->GetDataStorage())); m_ToolManager->InitializeTools(); - QString segTools2D = tr("Add Subtract Lasso Fill Erase Paint Wipe 'Region Growing' 'Live Wire'"); + QString segTools2D = tr("Add Subtract Lasso Fill Erase Close Paint Wipe 'Region Growing' 'Live Wire'"); QString segTools3D = tr("Threshold 'UL Threshold' Otsu 'Region Growing 3D' Picking"); #ifdef __linux__ segTools3D.append(" nnUNet"); // plugin not enabled for MacOS / Windows #endif std::regex extSegTool2DRegEx("SegTool2D$"); std::regex extSegTool3DRegEx("SegTool3D$"); auto tools = m_ToolManager->GetTools(); for (const auto &tool : tools) { if (std::regex_search(tool->GetNameOfClass(), extSegTool2DRegEx)) { segTools2D.append(QString(" '%1'").arg(tool->GetName())); } else if (std::regex_search(tool->GetNameOfClass(), extSegTool3DRegEx)) { segTools3D.append(QString(" '%1'").arg(tool->GetName())); } } // setup 2D tools m_Controls->toolSelectionBox2D->SetToolManager(*m_ToolManager); m_Controls->toolSelectionBox2D->SetGenerateAccelerators(true); m_Controls->toolSelectionBox2D->SetToolGUIArea(m_Controls->toolGUIArea2D); m_Controls->toolSelectionBox2D->SetDisplayedToolGroups(segTools2D.toStdString()); m_Controls->toolSelectionBox2D->SetLayoutColumns(3); m_Controls->toolSelectionBox2D->SetEnabledMode( QmitkToolSelectionBox::EnabledWithReferenceAndWorkingDataVisible); connect(m_Controls->toolSelectionBox2D, &QmitkToolSelectionBox::ToolSelected, this, &QmitkSegmentationView::OnManualTool2DSelected); // setup 3D Tools m_Controls->toolSelectionBox3D->SetToolManager(*m_ToolManager); m_Controls->toolSelectionBox3D->SetGenerateAccelerators(true); m_Controls->toolSelectionBox3D->SetToolGUIArea(m_Controls->toolGUIArea3D); m_Controls->toolSelectionBox3D->SetDisplayedToolGroups(segTools3D.toStdString()); m_Controls->toolSelectionBox3D->SetLayoutColumns(3); m_Controls->toolSelectionBox3D->SetEnabledMode( QmitkToolSelectionBox::EnabledWithReferenceAndWorkingDataVisible); m_Controls->slicesInterpolator->SetDataStorage(this->GetDataStorage()); // create general signal / slot connections connect(m_Controls->newSegmentationButton, &QToolButton::clicked, this, &QmitkSegmentationView::OnNewSegmentation); connect(m_Controls->slicesInterpolator, &QmitkSlicesInterpolator::SignalShowMarkerNodes, this, &QmitkSegmentationView::OnShowMarkerNodes); connect(m_Controls->layersWidget, &QmitkLayersWidget::LayersChanged, this, &QmitkSegmentationView::OnLayersChanged); connect(m_Controls->labelsWidget, &QmitkLabelsWidget::ShowLabelTable, this, &QmitkSegmentationView::OnShowLabelTable); // *------------------------ // * LABELSETWIDGET // *------------------------ connect(m_Controls->labelSetWidget, &QmitkLabelSetWidget::goToLabel, this, &QmitkSegmentationView::OnGoToLabel); connect(m_Controls->labelSetWidget, &QmitkLabelSetWidget::LabelSetWidgetReset, this, &QmitkSegmentationView::OnLabelSetWidgetReset); m_Controls->labelSetWidget->SetDataStorage(this->GetDataStorage()); m_Controls->labelSetWidget->hide(); auto command = itk::SimpleMemberCommand::New(); command->SetCallbackFunction(this, &QmitkSegmentationView::ValidateSelectionInput); m_RenderingManagerObserverTag = mitk::RenderingManager::GetInstance()->AddObserver(mitk::RenderingManagerViewsInitializedEvent(), command); m_RenderWindowPart = this->GetRenderWindowPart(); if (nullptr != m_RenderWindowPart) { this->RenderWindowPartActivated(m_RenderWindowPart); } // Make sure the GUI notices if appropriate data is already present on creation. // Should be done last, if everything else is configured because it triggers the autoselection of data. m_Controls->referenceNodeSelector->SetAutoSelectNewNodes(true); m_Controls->workingNodeSelector->SetAutoSelectNewNodes(true); this->UpdateGUI(); } void QmitkSegmentationView::RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart) { if (m_RenderWindowPart != renderWindowPart) { m_RenderWindowPart = renderWindowPart; } if (nullptr != m_Parent) { m_Parent->setEnabled(true); } if (nullptr == m_Controls) { return; } // tell the interpolation about tool manager, data storage and render window part if (nullptr != m_RenderWindowPart) { QList controllers; controllers.push_back(m_RenderWindowPart->GetQmitkRenderWindow("axial")->GetSliceNavigationController()); controllers.push_back(m_RenderWindowPart->GetQmitkRenderWindow("sagittal")->GetSliceNavigationController()); controllers.push_back(m_RenderWindowPart->GetQmitkRenderWindow("coronal")->GetSliceNavigationController()); m_Controls->slicesInterpolator->Initialize(m_ToolManager, controllers); } } void QmitkSegmentationView::RenderWindowPartDeactivated(mitk::IRenderWindowPart* /*renderWindowPart*/) { m_RenderWindowPart = nullptr; if (nullptr != m_Parent) { m_Parent->setEnabled(false); } } void QmitkSegmentationView::OnPreferencesChanged(const berry::IBerryPreferences* prefs) { auto labelSuggestions = mitk::BaseApplication::instance().config().getString(mitk::BaseApplication::ARG_SEGMENTATION_LABEL_SUGGESTIONS.toStdString(), ""); m_DefaultLabelNaming = labelSuggestions.empty() ? prefs->GetBool("default label naming", true) : false; // No default label naming when label suggestions are enforced via command-line argument if (nullptr != m_Controls) { m_Controls->labelsWidget->SetDefaultLabelNaming(m_DefaultLabelNaming); bool slimView = prefs->GetBool("slim view", false); m_Controls->toolSelectionBox2D->SetShowNames(!slimView); m_Controls->toolSelectionBox3D->SetShowNames(!slimView); } m_DrawOutline = prefs->GetBool("draw outline", true); m_SelectionMode = prefs->GetBool("selection mode", false); m_LabelSetPresetPreference = prefs->Get("label set preset", ""); this->ApplyDisplayOptions(); } void QmitkSegmentationView::NodeAdded(const mitk::DataNode* node) { if (m_SegmentationPredicate->CheckNode(node)) { this->ApplyDisplayOptions(const_cast(node)); } } void QmitkSegmentationView::NodeRemoved(const mitk::DataNode* node) { if (!m_SegmentationPredicate->CheckNode(node)) { return; } // remove all possible contour markers of the segmentation mitk::DataStorage::SetOfObjects::ConstPointer allContourMarkers = this->GetDataStorage()->GetDerivations( node, mitk::NodePredicateProperty::New("isContourMarker", mitk::BoolProperty::New(true))); ctkPluginContext* context = mitk::PluginActivator::getContext(); ctkServiceReference ppmRef = context->getServiceReference(); mitk::PlanePositionManagerService* service = context->getService(ppmRef); for (mitk::DataStorage::SetOfObjects::ConstIterator it = allContourMarkers->Begin(); it != allContourMarkers->End(); ++it) { std::string nodeName = node->GetName(); unsigned int t = nodeName.find_last_of(" "); unsigned int id = atof(nodeName.substr(t + 1).c_str()) - 1; service->RemovePlanePosition(id); this->GetDataStorage()->Remove(it->Value()); } context->ungetService(ppmRef); service = nullptr; mitk::Image* image = dynamic_cast(node->GetData()); mitk::SurfaceInterpolationController::GetInstance()->RemoveInterpolationSession(image); } void QmitkSegmentationView::OnEstablishLabelSetConnection() { if (m_WorkingNode.IsNull()) { return; } auto workingImage = dynamic_cast(m_WorkingNode->GetData()); if (nullptr == workingImage) { return; } workingImage->GetActiveLabelSet()->AddLabelEvent += mitk::MessageDelegate( m_Controls->labelSetWidget, &QmitkLabelSetWidget::ResetAllTableWidgetItems); workingImage->GetActiveLabelSet()->RemoveLabelEvent += mitk::MessageDelegate( m_Controls->labelSetWidget, &QmitkLabelSetWidget::ResetAllTableWidgetItems); workingImage->GetActiveLabelSet()->ModifyLabelEvent += mitk::MessageDelegate( m_Controls->labelSetWidget, &QmitkLabelSetWidget::UpdateAllTableWidgetItems); workingImage->GetActiveLabelSet()->AllLabelsModifiedEvent += mitk::MessageDelegate( m_Controls->labelSetWidget, &QmitkLabelSetWidget::UpdateAllTableWidgetItems); workingImage->GetActiveLabelSet()->ActiveLabelEvent += mitk::MessageDelegate1(m_Controls->labelSetWidget, &QmitkLabelSetWidget::SelectLabelByPixelValue); // Removed in T27851 to have a chance to react to AfterChangeLayerEvent. Did it brake something? // workingImage->BeforeChangeLayerEvent += mitk::MessageDelegate( // this, &QmitkMultiLabelSegmentationView::OnLooseLabelSetConnection); workingImage->AfterChangeLayerEvent += mitk::MessageDelegate( this, &QmitkSegmentationView::UpdateGUI); } void QmitkSegmentationView::OnLooseLabelSetConnection() { if (m_WorkingNode.IsNull()) { return; } auto workingImage = dynamic_cast(m_WorkingNode->GetData()); if (nullptr == workingImage) { return; } // Reset LabelSetWidget Events workingImage->GetActiveLabelSet()->AddLabelEvent -= mitk::MessageDelegate( m_Controls->labelSetWidget, &QmitkLabelSetWidget::ResetAllTableWidgetItems); workingImage->GetActiveLabelSet()->RemoveLabelEvent -= mitk::MessageDelegate( m_Controls->labelSetWidget, &QmitkLabelSetWidget::ResetAllTableWidgetItems); workingImage->GetActiveLabelSet()->ModifyLabelEvent -= mitk::MessageDelegate( m_Controls->labelSetWidget, &QmitkLabelSetWidget::UpdateAllTableWidgetItems); workingImage->GetActiveLabelSet()->AllLabelsModifiedEvent -= mitk::MessageDelegate( m_Controls->labelSetWidget, &QmitkLabelSetWidget::UpdateAllTableWidgetItems); workingImage->GetActiveLabelSet()->ActiveLabelEvent -= mitk::MessageDelegate1(m_Controls->labelSetWidget, &QmitkLabelSetWidget::SelectLabelByPixelValue); // Removed in T27851 to have a chance to react to AfterChangeLayerEvent. Did it brake something? // workingImage->BeforeChangeLayerEvent -= mitk::MessageDelegate( // this, &QmitkMultiLabelSegmentationView::OnLooseLabelSetConnection); workingImage->AfterChangeLayerEvent -= mitk::MessageDelegate( this, &QmitkSegmentationView::UpdateGUI); } void QmitkSegmentationView::ApplyDisplayOptions() { if (nullptr == m_Parent) { return; } if (nullptr == m_Controls) { return; // might happen on initialization (preferences loaded) } mitk::DataStorage::SetOfObjects::ConstPointer allImages = this->GetDataStorage()->GetSubset(m_SegmentationPredicate); for (mitk::DataStorage::SetOfObjects::const_iterator iter = allImages->begin(); iter != allImages->end(); ++iter) { this->ApplyDisplayOptions(*iter); } mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkSegmentationView::ApplyDisplayOptions(mitk::DataNode* node) { if (nullptr == node) { return; } auto labelSetImage = dynamic_cast(node->GetData()); if (nullptr != labelSetImage) { // node is a multi label segmentation // its outline property can be set in the segmentation preference page node->SetProperty("labelset.contour.active", mitk::BoolProperty::New(m_DrawOutline)); // force render window update to show outline node->GetData()->Modified(); } else if (nullptr != node->GetData()) { // node is a legacy binary segmentation bool isBinary = false; node->GetBoolProperty("binary", isBinary); if (isBinary) { node->SetProperty("outline binary", mitk::BoolProperty::New(m_DrawOutline)); node->SetProperty("outline width", mitk::FloatProperty::New(2.0)); // force render window update to show outline node->GetData()->Modified(); } } } void QmitkSegmentationView::OnContourMarkerSelected(const mitk::DataNode* node) { QmitkRenderWindow* selectedRenderWindow = nullptr; auto* renderWindowPart = this->GetRenderWindowPart(mitk::WorkbenchUtil::OPEN); auto* axialRenderWindow = renderWindowPart->GetQmitkRenderWindow("axial"); auto* sagittalRenderWindow = renderWindowPart->GetQmitkRenderWindow("sagittal"); auto* coronalRenderWindow = renderWindowPart->GetQmitkRenderWindow("coronal"); auto* threeDRenderWindow = renderWindowPart->GetQmitkRenderWindow("3d"); bool PlanarFigureInitializedWindow = false; // find initialized renderwindow if (node->GetBoolProperty("PlanarFigureInitializedWindow", PlanarFigureInitializedWindow, axialRenderWindow->GetRenderer())) { selectedRenderWindow = axialRenderWindow; } if (!selectedRenderWindow && node->GetBoolProperty( "PlanarFigureInitializedWindow", PlanarFigureInitializedWindow, sagittalRenderWindow->GetRenderer())) { selectedRenderWindow = sagittalRenderWindow; } if (!selectedRenderWindow && node->GetBoolProperty( "PlanarFigureInitializedWindow", PlanarFigureInitializedWindow, coronalRenderWindow->GetRenderer())) { selectedRenderWindow = coronalRenderWindow; } if (!selectedRenderWindow && node->GetBoolProperty( "PlanarFigureInitializedWindow", PlanarFigureInitializedWindow, threeDRenderWindow->GetRenderer())) { selectedRenderWindow = threeDRenderWindow; } // make node visible if (nullptr != selectedRenderWindow) { std::string nodeName = node->GetName(); unsigned int t = nodeName.find_last_of(" "); unsigned int id = atof(nodeName.substr(t + 1).c_str()) - 1; ctkPluginContext* context = mitk::PluginActivator::getContext(); ctkServiceReference ppmRef = context->getServiceReference(); mitk::PlanePositionManagerService* service = context->getService(ppmRef); selectedRenderWindow->GetSliceNavigationController()->ExecuteOperation(service->GetPlanePosition(id)); context->ungetService(ppmRef); selectedRenderWindow->GetRenderer()->GetCameraController()->Fit(); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } } void QmitkSegmentationView::OnSelectionChanged(berry::IWorkbenchPart::Pointer /*part*/, const QList& nodes) { if (0 == nodes.size()) { return; } std::string markerName = "Position"; unsigned int numberOfNodes = nodes.size(); std::string nodeName = nodes.at(0)->GetName(); if ((numberOfNodes == 1) && (nodeName.find(markerName) == 0)) { this->OnContourMarkerSelected(nodes.at(0)); return; } } void QmitkSegmentationView::ResetMouseCursor() { if (m_MouseCursorSet) { mitk::ApplicationCursor::GetInstance()->PopCursor(); m_MouseCursorSet = false; } } void QmitkSegmentationView::SetMouseCursor(const us::ModuleResource& resource, int hotspotX, int hotspotY) { // Remove previously set mouse cursor if (m_MouseCursorSet) { this->ResetMouseCursor(); } if (resource) { us::ModuleResourceStream cursor(resource, std::ios::binary); mitk::ApplicationCursor::GetInstance()->PushCursor(cursor, hotspotX, hotspotY); m_MouseCursorSet = true; } } void QmitkSegmentationView::UpdateGUI() { mitk::DataNode* referenceNode = m_ToolManager->GetReferenceData(0); bool hasReferenceNode = referenceNode != nullptr; mitk::DataNode* workingNode = m_ToolManager->GetWorkingData(0); bool hasWorkingNode = workingNode != nullptr; m_Controls->newSegmentationButton->setEnabled(false); if (hasReferenceNode) { m_Controls->newSegmentationButton->setEnabled(true); } if (hasWorkingNode && hasReferenceNode) { int layer = -1; referenceNode->GetIntProperty("layer", layer); workingNode->SetIntProperty("layer", layer + 1); } m_Controls->layersWidget->UpdateGUI(); m_Controls->labelsWidget->UpdateGUI(); this->ValidateSelectionInput(); } void QmitkSegmentationView::ValidateSelectionInput() { this->UpdateWarningLabel(""); m_Controls->layersWidget->setEnabled(false); m_Controls->labelsWidget->setEnabled(false); m_Controls->labelSetWidget->setEnabled(false); // the argument is actually not used // enable status depends on the tool manager selection m_Controls->toolSelectionBox2D->setEnabled(false); m_Controls->toolSelectionBox3D->setEnabled(false); m_Controls->slicesInterpolator->setEnabled(false); m_Controls->interpolatorWarningLabel->hide(); mitk::DataNode* referenceNode = m_Controls->referenceNodeSelector->GetSelectedNode(); mitk::DataNode* workingNode = m_Controls->workingNodeSelector->GetSelectedNode(); if (nullptr == referenceNode) { return; } if (nullptr == workingNode) { return; } mitk::IRenderWindowPart* renderWindowPart = this->GetRenderWindowPart(); auto workingNodeIsVisible = renderWindowPart && workingNode->IsVisible(renderWindowPart->GetQmitkRenderWindow("axial")->GetRenderer()); if (!workingNodeIsVisible) { this->UpdateWarningLabel(tr("The selected segmentation is currently not visible!")); return; } /* * Here we check whether the geometry of the selected segmentation image is aligned with the worldgeometry. * At the moment it is not supported to use a geometry different from the selected image for reslicing. * For further information see Bug 16063 */ const mitk::BaseGeometry* workingNodeGeo = workingNode->GetData()->GetGeometry(); const mitk::BaseGeometry* worldGeo = renderWindowPart->GetQmitkRenderWindow("3d")->GetSliceNavigationController()->GetCurrentGeometry3D(); if (nullptr != workingNodeGeo && nullptr != worldGeo) { if (mitk::Equal(*workingNodeGeo->GetBoundingBox(), *worldGeo->GetBoundingBox(), mitk::eps, true)) { m_ToolManager->SetReferenceData(referenceNode); m_ToolManager->SetWorkingData(workingNode); m_Controls->layersWidget->setEnabled(true); m_Controls->labelsWidget->setEnabled(true); m_Controls->labelSetWidget->setEnabled(true); m_Controls->toolSelectionBox2D->setEnabled(true); m_Controls->toolSelectionBox3D->setEnabled(true); auto labelSetImage = dynamic_cast(workingNode->GetData()); if (nullptr != labelSetImage) { int numberOfLabels = labelSetImage->GetNumberOfLabels(labelSetImage->GetActiveLayer()); if (2 == numberOfLabels) // fix for T27319: exterior is label 0, first label is label 1 { m_Controls->slicesInterpolator->setEnabled(true); } else { m_Controls->interpolatorWarningLabel->show(); m_Controls->interpolatorWarningLabel->setText("Interpolation only works for single label segmentations."); } } return; } } m_ToolManager->SetReferenceData(referenceNode); m_ToolManager->SetWorkingData(nullptr); this->UpdateWarningLabel(tr("Please perform a reinit on the segmentation image!")); } void QmitkSegmentationView::UpdateWarningLabel(QString text) { if (text.size() == 0) { m_Controls->selectionWarningLabel->hide(); } else { m_Controls->selectionWarningLabel->show(); m_Controls->selectionWarningLabel->setText("" + text + ""); } } diff --git a/Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/QmitkStdMultiWidgetEditor.cpp b/Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/QmitkStdMultiWidgetEditor.cpp index efa5d48b7c..dd081bb3ea 100644 --- a/Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/QmitkStdMultiWidgetEditor.cpp +++ b/Plugins/org.mitk.gui.qt.stdmultiwidgeteditor/src/QmitkStdMultiWidgetEditor.cpp @@ -1,398 +1,396 @@ /*============================================================================ The Medical Imaging Interaction Toolkit (MITK) Copyright (c) German Cancer Research Center (DKFZ) All rights reserved. Use of this source code is governed by a 3-clause BSD license that can be found in the LICENSE file. ============================================================================*/ #include "QmitkStdMultiWidgetEditor.h" #include #include #include #include #include #include #include #include #include // mitk qt widgets module #include #include #include #include // mitk gui qt common plugin #include const QString QmitkStdMultiWidgetEditor::EDITOR_ID = "org.mitk.editors.stdmultiwidget"; struct QmitkStdMultiWidgetEditor::Impl final { Impl(); ~Impl() = default; QmitkInteractionSchemeToolBar* m_InteractionSchemeToolBar; QmitkLevelWindowWidget* m_LevelWindowWidget; std::unique_ptr m_MultiWidgetDecorationManager; }; QmitkStdMultiWidgetEditor::Impl::Impl() : m_InteractionSchemeToolBar(nullptr) , m_LevelWindowWidget(nullptr) { // nothing here } ////////////////////////////////////////////////////////////////////////// // QmitkStdMultiWidgetEditor ////////////////////////////////////////////////////////////////////////// QmitkStdMultiWidgetEditor::QmitkStdMultiWidgetEditor() : QmitkAbstractMultiWidgetEditor() , m_Impl(std::make_unique()) { // nothing here } QmitkStdMultiWidgetEditor::~QmitkStdMultiWidgetEditor() { GetSite()->GetPage()->RemovePartListener(this); } berry::IPartListener::Events::Types QmitkStdMultiWidgetEditor::GetPartEventTypes() const { return Events::CLOSED | Events::OPENED | Events::HIDDEN | Events::VISIBLE; } void QmitkStdMultiWidgetEditor::PartClosed(const berry::IWorkbenchPartReference::Pointer& partRef) { if (partRef->GetId() == QmitkStdMultiWidgetEditor::EDITOR_ID) { const auto& multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr != multiWidget) { multiWidget->RemovePlanesFromDataStorage(); multiWidget->ActivateMenuWidget(false); } } } void QmitkStdMultiWidgetEditor::PartOpened(const berry::IWorkbenchPartReference::Pointer& partRef) { if (partRef->GetId() == QmitkStdMultiWidgetEditor::EDITOR_ID) { const auto& multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr != multiWidget) { multiWidget->AddPlanesToDataStorage(); multiWidget->ActivateMenuWidget(true); } } } void QmitkStdMultiWidgetEditor::PartHidden(const berry::IWorkbenchPartReference::Pointer& partRef) { if (partRef->GetId() == QmitkStdMultiWidgetEditor::EDITOR_ID) { const auto& multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr != multiWidget) { multiWidget->ActivateMenuWidget(false); } } } void QmitkStdMultiWidgetEditor::PartVisible(const berry::IWorkbenchPartReference::Pointer& partRef) { if (partRef->GetId() == QmitkStdMultiWidgetEditor::EDITOR_ID) { const auto& multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr != multiWidget) { multiWidget->ActivateMenuWidget(true); } } } QmitkLevelWindowWidget* QmitkStdMultiWidgetEditor::GetLevelWindowWidget() const { return m_Impl->m_LevelWindowWidget; } void QmitkStdMultiWidgetEditor::EnableSlicingPlanes(bool enable) { const auto& multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr == multiWidget) { return; } multiWidget->SetWidgetPlanesVisibility(enable); } bool QmitkStdMultiWidgetEditor::IsSlicingPlanesEnabled() const { const auto& multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr == multiWidget) { return false; } mitk::DataNode::Pointer node = multiWidget->GetWidgetPlane1(); if (node.IsNotNull()) { bool visible = false; node->GetVisibility(visible, nullptr); return visible; } else { return false; } } void QmitkStdMultiWidgetEditor::OnInteractionSchemeChanged(mitk::InteractionSchemeSwitcher::InteractionScheme scheme) { const auto& multiWidget = GetMultiWidget(); if (nullptr == multiWidget) { return; } if (mitk::InteractionSchemeSwitcher::PACSStandard == scheme) { m_Impl->m_InteractionSchemeToolBar->setVisible(true); } else { m_Impl->m_InteractionSchemeToolBar->setVisible(false); } QmitkAbstractMultiWidgetEditor::OnInteractionSchemeChanged(scheme); } void QmitkStdMultiWidgetEditor::ShowLevelWindowWidget(bool show) { if (show) { m_Impl->m_LevelWindowWidget->disconnect(this); m_Impl->m_LevelWindowWidget->SetDataStorage(GetDataStorage()); m_Impl->m_LevelWindowWidget->show(); } else { m_Impl->m_LevelWindowWidget->disconnect(this); m_Impl->m_LevelWindowWidget->hide(); } } void QmitkStdMultiWidgetEditor::SetFocus() { const auto& multiWidget = GetMultiWidget(); if (nullptr != multiWidget) { multiWidget->setFocus(); } } void QmitkStdMultiWidgetEditor::CreateQtPartControl(QWidget* parent) { QHBoxLayout* layout = new QHBoxLayout(parent); layout->setContentsMargins(0, 0, 0, 0); berry::IBerryPreferences* preferences = dynamic_cast(GetPreferences().GetPointer()); auto multiWidget = GetMultiWidget(); if (nullptr == multiWidget) { multiWidget = new QmitkStdMultiWidget(parent); // create left toolbar: interaction scheme toolbar to switch how the render window navigation behaves (in PACS mode) if (nullptr == m_Impl->m_InteractionSchemeToolBar) { m_Impl->m_InteractionSchemeToolBar = new QmitkInteractionSchemeToolBar(parent); layout->addWidget(m_Impl->m_InteractionSchemeToolBar); } m_Impl->m_InteractionSchemeToolBar->SetInteractionEventHandler(multiWidget->GetInteractionEventHandler()); multiWidget->SetDataStorage(GetDataStorage()); multiWidget->InitializeMultiWidget(); SetMultiWidget(multiWidget); } layout->addWidget(multiWidget); // create level window slider on the right side if (nullptr == m_Impl->m_LevelWindowWidget) { m_Impl->m_LevelWindowWidget = new QmitkLevelWindowWidget(parent); m_Impl->m_LevelWindowWidget->setObjectName(QString::fromUtf8("levelWindowWidget")); QSizePolicy sizePolicy(QSizePolicy::Preferred, QSizePolicy::Preferred); sizePolicy.setHorizontalStretch(0); sizePolicy.setVerticalStretch(0); sizePolicy.setHeightForWidth(m_Impl->m_LevelWindowWidget->sizePolicy().hasHeightForWidth()); m_Impl->m_LevelWindowWidget->setSizePolicy(sizePolicy); m_Impl->m_LevelWindowWidget->setMaximumWidth(50); } layout->addWidget(m_Impl->m_LevelWindowWidget); m_Impl->m_MultiWidgetDecorationManager = std::make_unique(multiWidget); GetSite()->GetPage()->AddPartListener(this); InitializePreferences(preferences); OnPreferencesChanged(preferences); } void QmitkStdMultiWidgetEditor::OnPreferencesChanged(const berry::IBerryPreferences* preferences) { const auto& multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr == multiWidget) { return; } // change and apply decoration preferences GetPreferenceDecorations(preferences); m_Impl->m_MultiWidgetDecorationManager->DecorationPreferencesChanged(preferences); QmitkAbstractMultiWidget::RenderWindowWidgetMap renderWindowWidgets = multiWidget->GetRenderWindowWidgets(); int i = 0; for (const auto& renderWindowWidget : renderWindowWidgets) { auto decorationColor = renderWindowWidget.second->GetDecorationColor(); multiWidget->SetDecorationColor(i, decorationColor); ++i; } - int crosshairgapsize = preferences->GetInt("crosshair gap size", 32); - multiWidget->GetWidgetPlane1()->SetIntProperty("Crosshair.Gap Size", crosshairgapsize); - multiWidget->GetWidgetPlane2()->SetIntProperty("Crosshair.Gap Size", crosshairgapsize); - multiWidget->GetWidgetPlane3()->SetIntProperty("Crosshair.Gap Size", crosshairgapsize); + int crosshairGapSize = preferences->GetInt("crosshair gap size", 32); + multiWidget->SetCrosshairGap(crosshairGapSize); // zooming and panning preferences bool constrainedZooming = preferences->GetBool("Use constrained zooming and panning", true); mitk::RenderingManager::GetInstance()->SetConstrainedPanningZooming(constrainedZooming); // mouse modes switcher toolbar bool PACSInteractionScheme = preferences->GetBool("PACS like mouse interaction", false); OnInteractionSchemeChanged(PACSInteractionScheme ? mitk::InteractionSchemeSwitcher::PACSStandard : mitk::InteractionSchemeSwitcher::MITKStandard); // level window setting bool showLevelWindowWidget = preferences->GetBool("Show level/window widget", true); ShowLevelWindowWidget(showLevelWindowWidget); mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void QmitkStdMultiWidgetEditor::InitializePreferences(berry::IBerryPreferences * preferences) { auto multiWidget = this->GetMultiWidget(); if (nullptr == multiWidget) return; this->GetPreferenceDecorations(preferences); // Override if preferences are defined for (const auto& renderWindowWidget : multiWidget->GetRenderWindowWidgets()) { auto widgetName = renderWindowWidget.second->GetWidgetName(); auto gradientBackgroundColors = renderWindowWidget.second->GetGradientBackgroundColors(); preferences->Put(widgetName + " first background color", this->MitkColorToHex(gradientBackgroundColors.first)); preferences->Put(widgetName + " second background color", this->MitkColorToHex(gradientBackgroundColors.second)); auto decorationColor = renderWindowWidget.second->GetDecorationColor(); preferences->Put(widgetName + " decoration color", this->MitkColorToHex(decorationColor)); auto cornerAnnotation = renderWindowWidget.second->GetCornerAnnotationText(); preferences->Put(widgetName + " corner annotation", QString::fromStdString(cornerAnnotation)); } } void QmitkStdMultiWidgetEditor::GetPreferenceDecorations(const berry::IBerryPreferences * preferences) { auto multiWidget = dynamic_cast(GetMultiWidget()); if (nullptr == multiWidget) return; auto hexBlack = "#000000"; auto gradientBlack = "#191919"; auto gradientGray = "#7F7F7F"; auto renderWindowWidgets = multiWidget->GetRenderWindowWidgets(); int i = 0; for (const auto& renderWindowWidget : renderWindowWidgets) { auto widgetName = renderWindowWidget.second->GetWidgetName(); if (mitk::BaseRenderer::Standard3D == mitk::BaseRenderer::GetInstance(renderWindowWidget.second->GetRenderWindow()->GetVtkRenderWindow())->GetMapperID()) { auto upper = preferences->Get(widgetName + " first background color", gradientBlack); auto lower = preferences->Get(widgetName + " second background color", gradientGray); renderWindowWidget.second->SetGradientBackgroundColors(HexColorToMitkColor(upper), HexColorToMitkColor(lower)); } else { auto upper = preferences->Get(widgetName + " first background color", hexBlack); auto lower = preferences->Get(widgetName + " second background color", hexBlack); renderWindowWidget.second->SetGradientBackgroundColors(HexColorToMitkColor(upper), HexColorToMitkColor(lower)); } auto defaultDecorationColor = multiWidget->GetDecorationColor(i); auto decorationColor = preferences->Get(widgetName + " decoration color", MitkColorToHex(defaultDecorationColor)); renderWindowWidget.second->SetDecorationColor(HexColorToMitkColor(decorationColor)); auto defaultCornerAnnotation = renderWindowWidget.second->GetCornerAnnotationText(); auto cornerAnnotation = preferences->Get(widgetName + " corner annotation", QString::fromStdString(defaultCornerAnnotation)); renderWindowWidget.second->SetCornerAnnotationText(cornerAnnotation.toStdString()); ++i; } } mitk::Color QmitkStdMultiWidgetEditor::HexColorToMitkColor(const QString& hexColor) { QColor qColor(hexColor); mitk::Color returnColor; float colorMax = 255.0f; if (hexColor.isEmpty()) // default value { returnColor[0] = 1.0; returnColor[1] = 1.0; returnColor[2] = 1.0; MITK_ERROR << "Using default color for unknown hex color " << qPrintable(hexColor); } else { returnColor[0] = qColor.red() / colorMax; returnColor[1] = qColor.green() / colorMax; returnColor[2] = qColor.blue() / colorMax; } return returnColor; } QString QmitkStdMultiWidgetEditor::MitkColorToHex(const mitk::Color& color) { QColor returnColor; float colorMax = 255.0f; returnColor.setRed(static_cast(color[0] * colorMax + 0.5)); returnColor.setGreen(static_cast(color[1] * colorMax + 0.5)); returnColor.setBlue(static_cast(color[2] * colorMax + 0.5)); return returnColor.name(); }