diff --git a/Modules/DiffusionImaging/Rendering/mitkOdfVtkMapper2D.txx b/Modules/DiffusionImaging/Rendering/mitkOdfVtkMapper2D.txx index cd8fe2ac09..d4ef6fa216 100644 --- a/Modules/DiffusionImaging/Rendering/mitkOdfVtkMapper2D.txx +++ b/Modules/DiffusionImaging/Rendering/mitkOdfVtkMapper2D.txx @@ -1,1166 +1,1174 @@ /*========================================================================= Program: Medical Imaging & Interaction Toolkit Language: C++ Date: $Date: 2008-08-25 18:10:57 +0200 (Mo, 25 Aug 2008) $ Version: $Revision: 15062 $ Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. See MITKCopyright.txt or http://www.mitk.org/copyright.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notices for more information. =========================================================================*/ #ifndef __mitkOdfVtkMapper2D_txx__ #define __mitkOdfVtkMapper2D_txx__ #include "mitkOdfVtkMapper2D.h" #include "mitkDataNode.h" #include "mitkBaseRenderer.h" #include "mitkMatrixConvert.h" #include "mitkGeometry3D.h" #include "mitkOdfNormalizationMethodProperty.h" #include "mitkOdfScaleByProperty.h" #include "mitkProperties.h" #include "mitkTensorImage.h" #include "vtkSphereSource.h" #include "vtkPropCollection.h" #include "vtkMaskedGlyph3D.h" #include "vtkGlyph2D.h" #include "vtkGlyph3D.h" #include "vtkMaskedProgrammableGlyphFilter.h" #include "vtkImageData.h" #include "vtkLinearTransform.h" #include "vtkCamera.h" #include "vtkPointData.h" #include "vtkTransformPolyDataFilter.h" #include "vtkTransform.h" #include "vtkOdfSource.h" #include "vtkDoubleArray.h" #include "vtkLookupTable.h" #include "vtkProperty.h" #include "vtkPolyDataNormals.h" #include "vtkLight.h" #include "vtkLightCollection.h" #include "vtkMath.h" #include "vtkFloatArray.h" #include "vtkDelaunay2D.h" #include "vtkMapper.h" #include "vtkRenderer.h" #include "vtkCamera.h" #include "itkOrientationDistributionFunction.h" #include "itkFixedArray.h" #include #include "vtkOpenGLRenderer.h" template vtkSmartPointer mitk::OdfVtkMapper2D::m_OdfTransform = vtkSmartPointer::New(); template vtkSmartPointer mitk::OdfVtkMapper2D::m_OdfVals = vtkSmartPointer::New(); template vtkSmartPointer mitk::OdfVtkMapper2D::m_OdfSource = vtkSmartPointer::New(); template float mitk::OdfVtkMapper2D::m_Scaling; template int mitk::OdfVtkMapper2D::m_Normalization; template int mitk::OdfVtkMapper2D::m_ScaleBy; template float mitk::OdfVtkMapper2D::m_IndexParam1; template float mitk::OdfVtkMapper2D::m_IndexParam2; #define ODF_MAPPER_PI 3.1415926535897932384626433832795 //#include "vtkSphereSource.h" //#include "vtkPolyDataMapper.h" //#include "vtkActor.h" //#include "vtkRenderWindow.h" //#include "vtkRenderer.h" //#include "vtkRenderWindowInteractor.h" //#include "vtkProperty.h" // //void bla(vtkPolyData* poly) //{ //m_OdfsActors // // map to graphics library // vtkPolyDataMapper *map = vtkPolyDataMapper::New(); // map->SetInput(poly); // // // actor coordinates geometry, properties, transformation // vtkActor *aSphere = vtkActor::New(); // aSphere->SetMapper(map); // aSphere->GetProperty()->SetColor(0,0,1); // sphere color blue // // // a renderer and render window // vtkRenderer *ren1 = vtkRenderer::New(); // vtkRenderWindow *renWin = vtkRenderWindow::New(); // renWin->AddRenderer(ren1); // // // an interactor // vtkRenderWindowInteractor *iren = vtkRenderWindowInteractor::New(); // iren->SetRenderWindow(renWin); // // // add the actor to the scene // ren1->AddActor(aSphere); // ren1->SetBackground(1,1,1); // Background color white // // // render an image (lights and cameras are created automatically) // renWin->Render(); // // // begin mouse interaction // iren->Start(); //} template mitk::OdfVtkMapper2D ::OdfVtkMapper2D() { m_VtkBased = true; m_LastDisplayGeometry = 0; m_PropAssemblies.push_back(vtkPropAssembly::New()); m_PropAssemblies.push_back(vtkPropAssembly::New()); m_PropAssemblies.push_back(vtkPropAssembly::New()); m_OdfsPlanes.push_back(vtkAppendPolyData::New()); m_OdfsPlanes.push_back(vtkAppendPolyData::New()); m_OdfsPlanes.push_back(vtkAppendPolyData::New()); m_OdfsPlanes[0]->AddInput(vtkPolyData::New()); m_OdfsPlanes[1]->AddInput(vtkPolyData::New()); m_OdfsPlanes[2]->AddInput(vtkPolyData::New()); m_OdfsActors.push_back(vtkActor::New()); m_OdfsActors.push_back(vtkActor::New()); m_OdfsActors.push_back(vtkActor::New()); m_OdfsActors[0]->GetProperty()->SetInterpolationToGouraud(); m_OdfsActors[1]->GetProperty()->SetInterpolationToGouraud(); m_OdfsActors[2]->GetProperty()->SetInterpolationToGouraud(); m_OdfsMappers.push_back(vtkPolyDataMapper::New()); m_OdfsMappers.push_back(vtkPolyDataMapper::New()); m_OdfsMappers.push_back(vtkPolyDataMapper::New()); vtkLookupTable *lut = vtkLookupTable::New(); //lut->SetMinimumTableValue(0,0,1,1); //lut->SetMaximumTableValue(1,0,0,1); //lut->SetWindow(0.1); //lut->SetLevel(0.05); <== not recognized or reset by mapper ?? //lut->Build(); m_OdfsMappers[0]->SetLookupTable(lut); m_OdfsMappers[1]->SetLookupTable(lut); m_OdfsMappers[2]->SetLookupTable(lut); m_OdfsActors[0]->SetMapper(m_OdfsMappers[0]); m_OdfsActors[1]->SetMapper(m_OdfsMappers[1]); m_OdfsActors[2]->SetMapper(m_OdfsMappers[2]); m_Planes.push_back(vtkPlane::New()); m_Planes.push_back(vtkPlane::New()); m_Planes.push_back(vtkPlane::New()); m_Cutters.push_back(vtkCutter::New()); m_Cutters.push_back(vtkCutter::New()); m_Cutters.push_back(vtkCutter::New()); m_Cutters[0]->SetCutFunction( m_Planes[0] ); m_Cutters[0]->GenerateValues( 1, 0, 1 ); m_Cutters[1]->SetCutFunction( m_Planes[1] ); m_Cutters[1]->GenerateValues( 1, 0, 1 ); m_Cutters[2]->SetCutFunction( m_Planes[2] ); m_Cutters[2]->GenerateValues( 1, 0, 1 ); // Windowing the cutted planes in direction 1 m_ThickPlanes1.push_back(vtkThickPlane::New()); m_ThickPlanes1.push_back(vtkThickPlane::New()); m_ThickPlanes1.push_back(vtkThickPlane::New()); m_Clippers1.push_back(vtkClipPolyData::New()); m_Clippers1.push_back(vtkClipPolyData::New()); m_Clippers1.push_back(vtkClipPolyData::New()); m_Clippers1[0]->SetClipFunction( m_ThickPlanes1[0] ); m_Clippers1[1]->SetClipFunction( m_ThickPlanes1[1] ); m_Clippers1[2]->SetClipFunction( m_ThickPlanes1[2] ); // Windowing the cutted planes in direction 2 m_ThickPlanes2.push_back(vtkThickPlane::New()); m_ThickPlanes2.push_back(vtkThickPlane::New()); m_ThickPlanes2.push_back(vtkThickPlane::New()); m_Clippers2.push_back(vtkClipPolyData::New()); m_Clippers2.push_back(vtkClipPolyData::New()); m_Clippers2.push_back(vtkClipPolyData::New()); m_Clippers2[0]->SetClipFunction( m_ThickPlanes2[0] ); m_Clippers2[1]->SetClipFunction( m_ThickPlanes2[1] ); m_Clippers2[2]->SetClipFunction( m_ThickPlanes2[2] ); m_TemplateOdf = itk::OrientationDistributionFunction::GetBaseMesh(); //vtkPoints* points = m_TemplateOdf->GetPoints(); m_OdfVals->Allocate(N); m_OdfSource->SetTemplateOdf(m_TemplateOdf); m_OdfSource->SetOdfVals(m_OdfVals); m_ShowMaxNumber = 500; //vtkMapper::GlobalImmediateModeRenderingOn(); } template mitk::OdfVtkMapper2D ::~OdfVtkMapper2D() { m_PropAssemblies[0]->Delete(); m_PropAssemblies[1]->Delete(); m_PropAssemblies[2]->Delete(); m_OdfsPlanes[0]->Delete(); m_OdfsPlanes[1]->Delete(); m_OdfsPlanes[2]->Delete(); m_OdfsActors[0]->Delete(); m_OdfsActors[1]->Delete(); m_OdfsActors[2]->Delete(); m_OdfsMappers[0]->Delete(); m_OdfsMappers[1]->Delete(); m_OdfsMappers[2]->Delete(); m_Planes[0]->Delete(); m_Planes[1]->Delete(); m_Planes[2]->Delete(); m_Cutters[0]->Delete(); m_Cutters[1]->Delete(); m_Cutters[2]->Delete(); m_ThickPlanes1[0]->Delete(); m_ThickPlanes1[1]->Delete(); m_ThickPlanes1[2]->Delete(); m_ThickPlanes2[0]->Delete(); m_ThickPlanes2[1]->Delete(); m_ThickPlanes2[2]->Delete(); m_Clippers1[0]->Delete(); m_Clippers1[1]->Delete(); m_Clippers1[2]->Delete(); m_Clippers2[0]->Delete(); m_Clippers2[1]->Delete(); m_Clippers2[2]->Delete(); } template mitk::Image* mitk::OdfVtkMapper2D ::GetInput() { return static_cast ( m_DataNode->GetData() ); } template vtkProp* mitk::OdfVtkMapper2D ::GetVtkProp(mitk::BaseRenderer* renderer) { return m_PropAssemblies[GetIndex(renderer)]; } template int mitk::OdfVtkMapper2D ::GetIndex(mitk::BaseRenderer* renderer) { if(!strcmp(renderer->GetName(),"stdmulti.widget1")) return 0; if(!strcmp(renderer->GetName(),"stdmulti.widget2")) return 1; if(!strcmp(renderer->GetName(),"stdmulti.widget3")) return 2; return 0; } template void mitk::OdfVtkMapper2D ::GlyphMethod(void *arg) { vtkMaskedProgrammableGlyphFilter *pfilter=(vtkMaskedProgrammableGlyphFilter*)arg; double point[3]; double debugpoint[3]; pfilter->GetPoint(point); pfilter->GetPoint(debugpoint); itk::Point p(point); Vector3D spacing = pfilter->GetGeometry()->GetSpacing(); p[0] /= spacing[0]; p[1] /= spacing[1]; p[2] /= spacing[2]; + p[0] += 0.5; + p[1] += 0.5; + p[2] += 0.5; mitk::Point3D p2; pfilter->GetGeometry()->IndexToWorld( p, p2 ); point[0] = p2[0]; point[1] = p2[1]; point[2] = p2[2]; vtkPointData* data = pfilter->GetPointData(); vtkDataArray* odfvals = data->GetArray("vector"); vtkIdType id = pfilter->GetPointId(); m_OdfTransform->Identity(); m_OdfTransform->Translate(point[0],point[1],point[2]); typedef itk::OrientationDistributionFunction OdfType; OdfType odf; if(odfvals->GetNumberOfComponents()==6) { float tensorelems[6] = { (float)odfvals->GetComponent(id,0), (float)odfvals->GetComponent(id,1), (float)odfvals->GetComponent(id,2), (float)odfvals->GetComponent(id,3), (float)odfvals->GetComponent(id,4), (float)odfvals->GetComponent(id,5), }; itk::DiffusionTensor3D tensor(tensorelems); odf.InitFromTensor(tensor); } else { for(int i=0; iGetComponent(id,i); } switch(m_Normalization) { case ODFN_MINMAX: odf = odf.MinMaxNormalize(); break; case ODFN_MAX: odf = odf.MaxNormalize(); break; case ODFN_NONE: // nothing break; case ODFN_GLOBAL_MAX: // global max not implemented yet break; default: odf = odf.MinMaxNormalize(); } switch(m_ScaleBy) { case ODFSB_NONE: break; case ODFSB_GFA: odf = odf * odf.GetGeneralizedGFA(m_IndexParam1, m_IndexParam2); break; case ODFSB_PC: odf = odf * odf.GetPrincipleCurvature(m_IndexParam1, m_IndexParam2, 0); break; } for(int i=0; iSetComponent(0,i,0.5*odf[i]*m_Scaling); //double max = -100000; //double min = 100000; //for( unsigned int i=0; i max ? odf[i] : max; // min = odf[i] < min ? odf[i] : min; //} m_OdfSource->Modified(); } template void mitk::OdfVtkMapper2D ::AdaptCameraPosition(mitk::BaseRenderer* renderer, OdfDisplayGeometry* dispGeo ) { double viewAngle = renderer->GetVtkRenderer()->GetActiveCamera()->GetViewAngle(); viewAngle = viewAngle * (ODF_MAPPER_PI/180.0); viewAngle /= 2; double dist = dispGeo->d/tan(viewAngle); mitk::Point3D mfoc; mfoc[0]=dispGeo->M3D[0]; mfoc[1]=dispGeo->M3D[1]; mfoc[2]=dispGeo->M3D[2]; mitk::Point3D mpos; mpos[0]=mfoc[0]+dist*dispGeo->normal[0]; mpos[1]=mfoc[1]+dist*dispGeo->normal[1]; mpos[2]=mfoc[2]+dist*dispGeo->normal[2]; mitk::Point3D mup; mup[0]=dispGeo->O3D[0]-dispGeo->M3D[0]; mup[1]=dispGeo->O3D[1]-dispGeo->M3D[1]; mup[2]=dispGeo->O3D[2]-dispGeo->M3D[2]; renderer->GetVtkRenderer()->GetActiveCamera()->SetParallelProjection(true); renderer->GetVtkRenderer()->GetActiveCamera()->SetParallelScale(dist/3.74); vtkCamera* camera = renderer->GetVtkRenderer()->GetActiveCamera(); if (camera) { camera->SetPosition(mpos[0],mpos[1],mpos[2]); camera->SetFocalPoint(mfoc[0], mfoc[1],mfoc[2]); camera->SetViewUp(mup[0],mup[1],mup[2]); } renderer->GetVtkRenderer()->ResetCameraClippingRange(); } template typename mitk::OdfVtkMapper2D::OdfDisplayGeometry* mitk::OdfVtkMapper2D ::MeasureDisplayedGeometry(mitk::BaseRenderer* renderer) { //vtkLinearTransform * vtktransform = this->GetDataNode()->GetVtkTransform(this->GetTimestep()); Geometry2D::ConstPointer worldGeometry = renderer->GetCurrentWorldGeometry2D(); PlaneGeometry::ConstPointer worldPlaneGeometry = dynamic_cast( worldGeometry.GetPointer() ); // set up the cutter orientation according to the current geometry of // the renderers plane vtkFloatingPointType vp[ 3 ], vnormal[ 3 ]; Point3D point = worldPlaneGeometry->GetOrigin(); Vector3D normal = worldPlaneGeometry->GetNormal(); normal.Normalize(); vnl2vtk( point.Get_vnl_vector(), vp ); vnl2vtk( normal.Get_vnl_vector(), vnormal ); mitk::DisplayGeometry::Pointer dispGeometry = renderer->GetDisplayGeometry(); mitk::Vector2D size = dispGeometry->GetSizeInMM(); mitk::Vector2D origin = dispGeometry->GetOriginInMM(); // // |------O------| // | d2 | // L d1 M | // | | // |-------------| // mitk::Vector2D M; mitk::Vector2D L; mitk::Vector2D O; M[0] = origin[0] + size[0]/2; M[1] = origin[1] + size[1]/2; L[0] = origin[0]; L[1] = origin[1] + size[1]/2; O[0] = origin[0] + size[0]/2; O[1] = origin[1] + size[1]; mitk::Point2D point1; point1[0] = M[0]; point1[1] = M[1]; point1[2] = M[2]; mitk::Point3D M3D; dispGeometry->Map(point1, M3D); point1[0] = L[0]; point1[1] = L[1]; point1[2] = L[2]; mitk::Point3D L3D; dispGeometry->Map(point1, L3D); point1[0] = O[0]; point1[1] = O[1]; point1[2] = O[2]; mitk::Point3D O3D; dispGeometry->Map(point1, O3D); double d1 = sqrt((M3D[0]-L3D[0])*(M3D[0]-L3D[0]) + (M3D[1]-L3D[1])*(M3D[1]-L3D[1]) + (M3D[2]-L3D[2])*(M3D[2]-L3D[2])); double d2 = sqrt((M3D[0]-O3D[0])*(M3D[0]-O3D[0]) + (M3D[1]-O3D[1])*(M3D[1]-O3D[1]) + (M3D[2]-O3D[2])*(M3D[2]-O3D[2])); double d = d1>d2 ? d1 : d2; d = d2; OdfDisplayGeometry* retval = new OdfDisplayGeometry(); retval->vp[0] = vp[0]; retval->vp[1] = vp[1]; retval->vp[2] = vp[2]; retval->vnormal[0] = vnormal[0]; retval->vnormal[1] = vnormal[1]; retval->vnormal[2] = vnormal[2]; retval->normal[0] = normal[0]; retval->normal[1] = normal[1]; retval->normal[2] = normal[2]; retval->d = d; retval->d1 = d1; retval->d2 = d2; retval->M3D[0] = M3D[0]; retval->M3D[1] = M3D[1]; retval->M3D[2] = M3D[2]; retval->L3D[0] = L3D[0]; retval->L3D[1] = L3D[1]; retval->L3D[2] = L3D[2]; retval->O3D[0] = O3D[0]; retval->O3D[1] = O3D[1]; retval->O3D[2] = O3D[2]; retval->vp_original[0] = vp[0]; retval->vp_original[1] = vp[1]; retval->vp_original[2] = vp[2]; retval->vnormal_original[0] = vnormal[0]; retval->vnormal_original[1] = vnormal[1]; retval->vnormal_original[2] = vnormal[2]; retval->size[0] = size[0]; retval->size[1] = size[1]; retval->origin[0] = origin[0]; retval->origin[1] = origin[1]; return retval; } template void mitk::OdfVtkMapper2D ::Slice(mitk::BaseRenderer* renderer, OdfDisplayGeometry* dispGeo) { vtkLinearTransform * vtktransform = this->GetDataNode()->GetVtkTransform(this->GetTimestep()); int index = GetIndex(renderer); vtkTransform* inversetransform = vtkTransform::New(); inversetransform->Identity(); inversetransform->Concatenate(vtktransform->GetLinearInverse()); double myscale[3]; ((vtkTransform*)vtktransform)->GetScale(myscale); inversetransform->PostMultiply(); inversetransform->Scale(1*myscale[0],1*myscale[1],1*myscale[2]); inversetransform->TransformPoint( dispGeo->vp, dispGeo->vp ); inversetransform->TransformNormalAtPoint( dispGeo->vp, dispGeo->vnormal, dispGeo->vnormal ); // vtk works in axis align coords // thus the normal also must be axis align, since // we do not allow arbitrary cutting through volume // // vnormal should already be axis align, but in order // to get rid of precision effects, we set the two smaller // components to zero here int dims[3]; m_VtkImage->GetDimensions(dims); double spac[3]; m_VtkImage->GetSpacing(spac); if(fabs(dispGeo->vnormal[0]) > fabs(dispGeo->vnormal[1]) && fabs(dispGeo->vnormal[0]) > fabs(dispGeo->vnormal[2]) ) { if(fabs(dispGeo->vp[0]/spac[0]) < 0.4) dispGeo->vp[0] = 0.4*spac[0]; if(fabs(dispGeo->vp[0]/spac[0]) > (dims[0]-1)-0.4) dispGeo->vp[0] = ((dims[0]-1)-0.4)*spac[0]; dispGeo->vnormal[1] = 0; dispGeo->vnormal[2] = 0; } if(fabs(dispGeo->vnormal[1]) > fabs(dispGeo->vnormal[0]) && fabs(dispGeo->vnormal[1]) > fabs(dispGeo->vnormal[2]) ) { if(fabs(dispGeo->vp[1]/spac[1]) < 0.4) dispGeo->vp[1] = 0.4*spac[1]; if(fabs(dispGeo->vp[1]/spac[1]) > (dims[1]-1)-0.4) dispGeo->vp[1] = ((dims[1]-1)-0.4)*spac[1]; dispGeo->vnormal[0] = 0; dispGeo->vnormal[2] = 0; } if(fabs(dispGeo->vnormal[2]) > fabs(dispGeo->vnormal[1]) && fabs(dispGeo->vnormal[2]) > fabs(dispGeo->vnormal[0]) ) { if(fabs(dispGeo->vp[2]/spac[2]) < 0.4) dispGeo->vp[2] = 0.4*spac[2]; if(fabs(dispGeo->vp[2]/spac[2]) > (dims[2]-1)-0.4) dispGeo->vp[2] = ((dims[2]-1)-0.4)*spac[2]; dispGeo->vnormal[0] = 0; dispGeo->vnormal[1] = 0; } m_Planes[index]->SetTransform( (vtkAbstractTransform*)NULL ); m_Planes[index]->SetOrigin( dispGeo->vp ); m_Planes[index]->SetNormal( dispGeo->vnormal ); vtkPoints* points = NULL; vtkPoints* tmppoints = NULL; vtkPolyData* polydata = NULL; vtkFloatArray* pointdata = NULL; vtkDelaunay2D *delaunay = NULL; vtkPolyData* cuttedPlane = NULL; + + // the cutter only works if we do not have a 2D-image + // or if we have a 2D-image and want to see the whole image. + // + // for side views of 2D-images, we need some special treatment if(!( (dims[0] == 1 && dispGeo->vnormal[0] != 0) || (dims[1] == 1 && dispGeo->vnormal[1] != 0) || (dims[2] == 1 && dispGeo->vnormal[2] != 0) )) { m_Cutters[index]->SetCutFunction( m_Planes[index] ); m_Cutters[index]->SetInput( m_VtkImage ); m_Cutters[index]->Update(); cuttedPlane = m_Cutters[index]->GetOutput(); } else { // cutting of a 2D-Volume does not work, // so we have to build up our own polydata object cuttedPlane = vtkPolyData::New(); points = vtkPoints::New(); points->SetNumberOfPoints(m_VtkImage->GetNumberOfPoints()); for(int i=0; iGetNumberOfPoints(); i++) { points->SetPoint(i, m_VtkImage->GetPoint(i)); } cuttedPlane->SetPoints(points); pointdata = vtkFloatArray::New(); int comps = m_VtkImage->GetPointData()->GetScalars()->GetNumberOfComponents(); pointdata->SetNumberOfComponents(comps); int tuples = m_VtkImage->GetPointData()->GetScalars()->GetNumberOfTuples(); pointdata->SetNumberOfTuples(tuples); for(int i=0; iSetTuple(i,m_VtkImage->GetPointData()->GetScalars()->GetTuple(i)); pointdata->SetName( "vector" ); cuttedPlane->GetPointData()->AddArray(pointdata); int nZero1, nZero2; if(dims[0]==1) { nZero1 = 1; nZero2 = 2; } else if(dims[1]==1) { nZero1 = 0; nZero2 = 2; } else { nZero1 = 0; nZero2 = 1; } tmppoints = vtkPoints::New(); for(int j=0; jGetNumberOfPoints(); j++){ double pt[3]; m_VtkImage->GetPoint(j,pt); tmppoints->InsertNextPoint(pt[nZero1],pt[nZero2],0); } polydata = vtkPolyData::New(); polydata->SetPoints( tmppoints ); delaunay = vtkDelaunay2D::New(); delaunay->SetInput( polydata ); delaunay->Update(); vtkCellArray* polys = delaunay->GetOutput()->GetPolys(); cuttedPlane->SetPolys(polys); } if(cuttedPlane->GetNumberOfPoints()) { // WINDOWING HERE inversetransform = vtkTransform::New(); inversetransform->Identity(); inversetransform->Concatenate(vtktransform->GetLinearInverse()); double myscale[3]; ((vtkTransform*)vtktransform)->GetScale(myscale); inversetransform->PostMultiply(); inversetransform->Scale(1*myscale[0],1*myscale[1],1*myscale[2]); dispGeo->vnormal[0] = dispGeo->M3D[0]-dispGeo->O3D[0]; dispGeo->vnormal[1] = dispGeo->M3D[1]-dispGeo->O3D[1]; dispGeo->vnormal[2] = dispGeo->M3D[2]-dispGeo->O3D[2]; vtkMath::Normalize(dispGeo->vnormal); dispGeo->vp[0] = dispGeo->M3D[0]; dispGeo->vp[1] = dispGeo->M3D[1]; dispGeo->vp[2] = dispGeo->M3D[2]; inversetransform->TransformPoint( dispGeo->vp, dispGeo->vp ); inversetransform->TransformNormalAtPoint( dispGeo->vp, dispGeo->vnormal, dispGeo->vnormal ); m_ThickPlanes1[index]->count = 0; m_ThickPlanes1[index]->SetTransform((vtkAbstractTransform*)NULL ); m_ThickPlanes1[index]->SetPose( dispGeo->vnormal, dispGeo->vp ); m_ThickPlanes1[index]->SetThickness(dispGeo->d2); m_Clippers1[index]->SetClipFunction( m_ThickPlanes1[index] ); m_Clippers1[index]->SetInput( cuttedPlane ); m_Clippers1[index]->SetInsideOut(1); m_Clippers1[index]->Update(); dispGeo->vnormal[0] = dispGeo->M3D[0]-dispGeo->L3D[0]; dispGeo->vnormal[1] = dispGeo->M3D[1]-dispGeo->L3D[1]; dispGeo->vnormal[2] = dispGeo->M3D[2]-dispGeo->L3D[2]; vtkMath::Normalize(dispGeo->vnormal); dispGeo->vp[0] = dispGeo->M3D[0]; dispGeo->vp[1] = dispGeo->M3D[1]; dispGeo->vp[2] = dispGeo->M3D[2]; inversetransform->TransformPoint( dispGeo->vp, dispGeo->vp ); inversetransform->TransformNormalAtPoint( dispGeo->vp, dispGeo->vnormal, dispGeo->vnormal ); m_ThickPlanes2[index]->count = 0; m_ThickPlanes2[index]->SetTransform((vtkAbstractTransform*)NULL ); m_ThickPlanes2[index]->SetPose( dispGeo->vnormal, dispGeo->vp ); m_ThickPlanes2[index]->SetThickness(dispGeo->d1); m_Clippers2[index]->SetClipFunction( m_ThickPlanes2[index] ); m_Clippers2[index]->SetInput( m_Clippers1[index]->GetOutput() ); m_Clippers2[index]->SetInsideOut(1); m_Clippers2[index]->Update(); cuttedPlane = m_Clippers2[index]->GetOutput (); if(cuttedPlane->GetNumberOfPoints()) { m_OdfsPlanes[index]->RemoveAllInputs(); vtkPolyDataNormals* normals = vtkPolyDataNormals::New(); normals->SetInputConnection( m_OdfSource->GetOutputPort() ); normals->SplittingOff(); normals->ConsistencyOff(); normals->AutoOrientNormalsOff(); normals->ComputePointNormalsOn(); normals->ComputeCellNormalsOff(); normals->FlipNormalsOff(); normals->NonManifoldTraversalOff(); vtkTransformPolyDataFilter* trans = vtkTransformPolyDataFilter::New(); trans->SetInputConnection( normals->GetOutputPort() ); trans->SetTransform(m_OdfTransform); vtkMaskedProgrammableGlyphFilter* glyphGenerator = vtkMaskedProgrammableGlyphFilter::New(); glyphGenerator->SetMaximumNumberOfPoints(m_ShowMaxNumber); glyphGenerator->SetRandomMode(1); glyphGenerator->SetUseMaskPoints(1); glyphGenerator->SetSource( trans->GetOutput() ); glyphGenerator->SetInput(cuttedPlane); glyphGenerator->SetColorModeToColorBySource(); glyphGenerator->SetInputArrayToProcess(0,0,0, vtkDataObject::FIELD_ASSOCIATION_POINTS , "vector"); glyphGenerator->SetGeometry(this->GetDataNode()->GetData()->GetGeometry()); glyphGenerator->SetGlyphMethod(&(GlyphMethod),(void *)glyphGenerator); try { glyphGenerator->Update(); } catch( itk::ExceptionObject& err ) { std::cout << err << std::endl; } m_OdfsPlanes[index]->AddInput(glyphGenerator->GetOutput()); trans->Delete(); glyphGenerator->Delete(); normals->Delete(); m_OdfsPlanes[index]->Update(); } } m_PropAssemblies[index]->VisibilityOn(); if(m_PropAssemblies[index]->GetParts()->IsItemPresent(m_OdfsActors[index])) m_PropAssemblies[index]->RemovePart(m_OdfsActors[index]); m_OdfsMappers[index]->SetInput(m_OdfsPlanes[index]->GetOutput()); m_PropAssemblies[index]->AddPart(m_OdfsActors[index]); if(inversetransform) inversetransform->Delete(); if(points) points->Delete(); if(pointdata) pointdata->Delete(); if(tmppoints) tmppoints->Delete(); if(polydata) polydata->Delete(); if(delaunay) delaunay->Delete(); } template bool mitk::OdfVtkMapper2D ::IsVisibleOdfs(mitk::BaseRenderer* renderer) { if(this->IsPlaneRotated(renderer)) return false; bool retval = false; switch(GetIndex(renderer)) { case 0: retval = this->IsVisible(renderer, "VisibleOdfs_T"); break; case 1: retval = this->IsVisible(renderer, "VisibleOdfs_S"); break; case 2: retval = this->IsVisible(renderer, "VisibleOdfs_C"); break; } return retval; } template void mitk::OdfVtkMapper2D ::MitkRenderOverlay(mitk::BaseRenderer* renderer) { //std::cout << "MitkRenderOverlay(" << renderer->GetName() << ")" << std::endl; if ( this->IsVisibleOdfs(renderer)==false ) return; if ( this->GetVtkProp(renderer)->GetVisibility() ) { this->GetVtkProp(renderer)->RenderOverlay(renderer->GetVtkRenderer()); } } template void mitk::OdfVtkMapper2D ::MitkRenderOpaqueGeometry(mitk::BaseRenderer* renderer) { //std::cout << "MitkRenderOpaqueGeometry(" << renderer->GetName() << ")" << std::endl; if ( this->IsVisibleOdfs( renderer )==false ) return; if ( this->GetVtkProp(renderer)->GetVisibility() ) { // adapt cam pos OdfDisplayGeometry* dispGeo = MeasureDisplayedGeometry( renderer); - AdaptCameraPosition(renderer, dispGeo); + //AdaptCameraPosition(renderer, dispGeo); - if(this->GetDataNode()->IsOn("DoRefresh",NULL)) + if(/*this->GetDataNode()->IsOn("DoRefresh",NULL)*/false) { glMatrixMode( GL_PROJECTION ); glPushMatrix(); glLoadIdentity(); glMatrixMode( GL_MODELVIEW ); glPushMatrix(); glLoadIdentity(); renderer->GetVtkRenderer()->SetErase(false); renderer->GetVtkRenderer()->GetActiveCamera()->Render(renderer->GetVtkRenderer()); renderer->GetVtkRenderer()->SetErase(true); //GLfloat matrix[16]; //glGetFloatv(GL_MODELVIEW_MATRIX, matrix); float LightPos[4] = {0,0,0,0}; int index = GetIndex(renderer); if(index==0) { LightPos[2] = -1000; } if(index==1) { LightPos[0] = 1000; } if(index==2) { LightPos[1] = -1000; } glLightfv(GL_LIGHT0,GL_POSITION,LightPos); glLightfv(GL_LIGHT1,GL_POSITION,LightPos); glLightfv(GL_LIGHT2,GL_POSITION,LightPos); glLightfv(GL_LIGHT3,GL_POSITION,LightPos); glLightfv(GL_LIGHT4,GL_POSITION,LightPos); glLightfv(GL_LIGHT5,GL_POSITION,LightPos); glLightfv(GL_LIGHT6,GL_POSITION,LightPos); glLightfv(GL_LIGHT7,GL_POSITION,LightPos); } this->GetVtkProp(renderer)->RenderOpaqueGeometry( renderer->GetVtkRenderer() ); - if(this->GetDataNode()->IsOn("DoRefresh",NULL)) + if(/*this->GetDataNode()->IsOn("DoRefresh",NULL)*/false) { glMatrixMode( GL_PROJECTION ); glPopMatrix(); glMatrixMode( GL_MODELVIEW ); glPopMatrix(); } } } template void mitk::OdfVtkMapper2D ::MitkRenderTranslucentGeometry(mitk::BaseRenderer* renderer) { //std::cout << "MitkRenderTranslucentGeometry(" << renderer->GetName() << ")" << std::endl; if ( this->IsVisibleOdfs(renderer)==false ) return; if ( this->GetVtkProp(renderer)->GetVisibility() ) //BUG (#1551) changed VTK_MINOR_VERSION FROM 3 to 2 cause RenderTranslucentGeometry was changed in minor version 2 #if ( ( VTK_MAJOR_VERSION >= 5 ) && ( VTK_MINOR_VERSION>=2) ) this->GetVtkProp(renderer)->RenderTranslucentPolygonalGeometry(renderer->GetVtkRenderer()); #else this->GetVtkProp(renderer)->RenderTranslucentGeometry(renderer->GetVtkRenderer()); #endif } template void mitk::OdfVtkMapper2D ::GenerateData() { mitk::Image::Pointer input = const_cast( this->GetInput() ); if ( input.IsNull() ) return ; std::string classname("TensorImage"); if(classname.compare(input->GetNameOfClass())==0) { m_VtkImage = dynamic_cast( this->GetInput() )->GetNonRgbVtkImageData(); } std::string qclassname("QBallImage"); if(qclassname.compare(input->GetNameOfClass())==0) { m_VtkImage = dynamic_cast( this->GetInput() )->GetNonRgbVtkImageData(); } if( m_VtkImage ) { // make sure, that we have point data with more than 1 component (as vectors) vtkPointData* pointData = m_VtkImage->GetPointData(); if ( pointData == NULL ) { itkWarningMacro( << "m_VtkImage->GetPointData() returns NULL!" ); return ; } if ( pointData->GetNumberOfArrays() == 0 ) { itkWarningMacro( << "m_VtkImage->GetPointData()->GetNumberOfArrays() is 0!" ); return ; } else if ( pointData->GetArray(0)->GetNumberOfComponents() != N && pointData->GetArray(0)->GetNumberOfComponents() != 6 /*for tensor visualization*/) { itkWarningMacro( << "number of components != number of directions in ODF!" ); return; } else if ( pointData->GetArrayName( 0 ) == NULL ) { m_VtkImage->GetPointData()->GetArray(0)->SetName("vector"); } } else { itkWarningMacro( << "m_VtkImage is NULL!" ); return ; } } template void mitk::OdfVtkMapper2D ::AdaptOdfScalingToImageSpacing( int index ) { // Spacing adapted scaling double spacing[3]; m_VtkImage->GetSpacing(spacing); double min; if(index==0) { min = spacing[0]; min = min > spacing[1] ? spacing[1] : min; } if(index==1) { min = spacing[1]; min = min > spacing[2] ? spacing[2] : min; } if(index==2) { min = spacing[0]; min = min > spacing[2] ? spacing[2] : min; } m_OdfSource->SetScale(min); } template void mitk::OdfVtkMapper2D ::SetRendererLightSources( mitk::BaseRenderer *renderer ) { // Light Sources vtkCollectionSimpleIterator sit; vtkLight* light; for(renderer->GetVtkRenderer()->GetLights()->InitTraversal(sit); (light = renderer->GetVtkRenderer()->GetLights()->GetNextLight(sit)); ) { renderer->GetVtkRenderer()->RemoveLight(light); } light = vtkLight::New(); light->SetFocalPoint(0,0,0); light->SetLightTypeToSceneLight(); light->SwitchOn(); light->SetIntensity(1.0); light->PositionalOff(); itk::Point p; int index = GetIndex(renderer); if(index==0) { p[0] = 0; p[1] = 0; p[2] = 10000; } if(index==1) { p[0] = 0; p[1] = 10000; p[2] = 0; } if(index==2) { p[0] = 10000; p[1] = 0; p[2] = 0; } mitk::Point3D p2; this->GetInput()->GetGeometry()->IndexToWorld(p,p2); light->SetPosition(p2[0],p2[1],p2[2]); renderer->GetVtkRenderer()->AddLight(light); } template void mitk::OdfVtkMapper2D ::ApplyPropertySettings() { this->GetDataNode()->GetFloatProperty( "Scaling", m_Scaling ); this->GetDataNode()->GetIntProperty( "ShowMaxNumber", m_ShowMaxNumber ); OdfNormalizationMethodProperty* nmp = dynamic_cast ( this->GetDataNode()->GetProperty( "Normalization" )); if(nmp) { m_Normalization = nmp->GetNormalization(); } OdfScaleByProperty* sbp = dynamic_cast ( this->GetDataNode()->GetProperty( "ScaleBy" )); if(sbp) { m_ScaleBy = sbp->GetScaleBy(); } this->GetDataNode()->GetFloatProperty( "IndexParam1", m_IndexParam1); this->GetDataNode()->GetFloatProperty( "IndexParam2", m_IndexParam2); } template bool mitk::OdfVtkMapper2D ::IsPlaneRotated(mitk::BaseRenderer* renderer) { Geometry2D::ConstPointer worldGeometry = renderer->GetCurrentWorldGeometry2D(); PlaneGeometry::ConstPointer worldPlaneGeometry = dynamic_cast( worldGeometry.GetPointer() ); vtkFloatingPointType vnormal[ 3 ]; Vector3D normal = worldPlaneGeometry->GetNormal(); normal.Normalize(); vnl2vtk( normal.Get_vnl_vector(), vnormal ); vtkLinearTransform * vtktransform = this->GetDataNode()->GetVtkTransform(this->GetTimestep()); vtkTransform* inversetransform = vtkTransform::New(); inversetransform->Identity(); inversetransform->Concatenate(vtktransform->GetLinearInverse()); double* n = inversetransform->TransformNormal(vnormal); int nonZeros = 0; for (int j=0; j<3; j++) { if (fabs(n[j])>1e-7){ nonZeros++; } } if(nonZeros>1) return true; return false; } template void mitk::OdfVtkMapper2D ::GenerateData( mitk::BaseRenderer *renderer ) { if(!m_VtkImage) { itkWarningMacro( << "m_VtkImage is NULL!" ); return ; } int index = GetIndex(renderer); if(IsVisibleOdfs(renderer)==false) { m_OdfsActors[0]->VisibilityOff(); m_OdfsActors[1]->VisibilityOff(); m_OdfsActors[2]->VisibilityOff(); return; } else { m_OdfsActors[0]->VisibilityOn(); m_OdfsActors[1]->VisibilityOn(); m_OdfsActors[2]->VisibilityOn(); OdfDisplayGeometry* dispGeo = MeasureDisplayedGeometry( renderer); if(!m_LastDisplayGeometry || !dispGeo->Equals(m_LastDisplayGeometry)) { AdaptOdfScalingToImageSpacing(index); SetRendererLightSources(renderer); ApplyPropertySettings(); - AdaptCameraPosition(renderer, dispGeo); + //AdaptCameraPosition(renderer, dispGeo); Slice(renderer, dispGeo); m_LastDisplayGeometry = dispGeo; } } // Get the TimeSlicedGeometry of the input object mitk::Image::Pointer input = const_cast(this->GetInput()); const TimeSlicedGeometry *inputTimeGeometry = input->GetTimeSlicedGeometry(); if (( inputTimeGeometry == NULL ) || ( inputTimeGeometry->GetTimeSteps() == 0 )) { m_PropAssemblies[0]->VisibilityOff(); m_PropAssemblies[1]->VisibilityOff(); m_PropAssemblies[2]->VisibilityOff(); return; } if( inputTimeGeometry->IsValidTime( this->GetTimestep() ) == false ) { m_PropAssemblies[0]->VisibilityOff(); m_PropAssemblies[1]->VisibilityOff(); m_PropAssemblies[2]->VisibilityOff(); return; } } template void mitk::OdfVtkMapper2D ::SetDefaultProperties(mitk::DataNode* node, mitk::BaseRenderer* /*renderer*/, bool /*overwrite*/) { node->SetProperty( "ShowMaxNumber", mitk::IntProperty::New( 150 ) ); node->SetProperty( "Scaling", mitk::FloatProperty::New( 1.0 ) ); node->SetProperty( "Normalization", mitk::OdfNormalizationMethodProperty::New()); node->SetProperty( "ScaleBy", mitk::OdfScaleByProperty::New()); node->SetProperty( "IndexParam1", mitk::FloatProperty::New(2)); node->SetProperty( "IndexParam2", mitk::FloatProperty::New(1)); node->SetProperty( "visible", mitk::BoolProperty::New( true ) ); node->SetProperty( "VisibleOdfs_T", mitk::BoolProperty::New( false ) ); node->SetProperty( "VisibleOdfs_C", mitk::BoolProperty::New( false ) ); node->SetProperty( "VisibleOdfs_S", mitk::BoolProperty::New( false ) ); node->SetProperty ("layer", mitk::IntProperty::New(100)); node->SetProperty( "DoRefresh", mitk::BoolProperty::New( true ) ); //node->SetProperty( "opacity", mitk::FloatProperty::New(1.0f) ); } #endif // __mitkOdfVtkMapper2D_txx__