diff --git a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.cpp b/Modules/SegmentationUI/Qmitk/QmitkSegmentationTaskListWidget.cpp
similarity index 93%
rename from Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.cpp
rename to Modules/SegmentationUI/Qmitk/QmitkSegmentationTaskListWidget.cpp
index bfae7c9f0b..82656b39a2 100644
--- a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.cpp
+++ b/Modules/SegmentationUI/Qmitk/QmitkSegmentationTaskListWidget.cpp
@@ -1,869 +1,845 @@
/*============================================================================
The Medical Imaging Interaction Toolkit (MITK)
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
============================================================================*/
#include "QmitkSegmentationTaskListWidget.h"
-#include "org_mitk_gui_qt_flow_segmentation_Activator.h"
#include
#include
#include
-#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
namespace
{
mitk::IPreferences* GetSegmentationPreferences()
{
return mitk::CoreServices::GetPreferencesService()->GetSystemPreferences()->Node("/org.mitk.views.segmentation");
}
- mitk::DataStorage* GetDataStorage()
- {
- auto* pluginContext = org_mitk_gui_qt_flow_segmentation_Activator::GetContext();
- auto dataStorageServiceReference = pluginContext->getServiceReference();
-
- if (dataStorageServiceReference)
- {
- auto* dataStorageService = pluginContext->getService(dataStorageServiceReference);
-
- if (dataStorageService != nullptr)
- {
- auto dataStorageReference = dataStorageService->GetDataStorage();
- pluginContext->ungetService(dataStorageServiceReference);
-
- return dataStorageReference->GetDataStorage();
- }
- }
-
- return nullptr;
- }
-
std::filesystem::path GetInputLocation(const mitk::BaseData* data)
{
std::string result;
if (data != nullptr)
data->GetPropertyList()->GetStringProperty("MITK.IO.reader.inputlocation", result);
return result;
}
QString ColorString(const QString& string, const QColor& color, const QColor& backgroundColor = QColor::Invalid)
{
if (!color.isValid() && !backgroundColor.isValid())
return string;
auto result = QStringLiteral("%1").arg(string);
return result;
}
}
/* This constructor has three objectives:
* 1. Do widget initialization that cannot be done in the .ui file
* 2. Connect signals and slots
* 3. Explicitly trigger a reset to a valid initial widget state
*/
QmitkSegmentationTaskListWidget::QmitkSegmentationTaskListWidget(QWidget* parent)
: QWidget(parent),
m_Ui(new Ui::QmitkSegmentationTaskListWidget),
m_FileSystemWatcher(new QFileSystemWatcher(this)),
m_UnsavedChanges(false)
{
m_Ui->setupUi(this);
- m_Ui->selectionWidget->SetDataStorage(GetDataStorage());
m_Ui->selectionWidget->SetSelectionIsOptional(true);
m_Ui->selectionWidget->SetEmptyInfo(QStringLiteral("Select a segmentation task list"));
m_Ui->selectionWidget->SetAutoSelectNewNodes(true);
m_Ui->selectionWidget->SetNodePredicate(mitk::TNodePredicateDataType::New());
m_Ui->progressBar->setStyleSheet(QString("QProgressBar::chunk { background-color: %1; }").arg(QmitkStyleManager::GetIconAccentColor()));
using Self = QmitkSegmentationTaskListWidget;
connect(m_Ui->selectionWidget, &QmitkSingleNodeSelectionWidget::CurrentSelectionChanged, this, &Self::OnSelectionChanged);
connect(m_Ui->previousButton, &QToolButton::clicked, this, &Self::OnPreviousButtonClicked);
connect(m_Ui->nextButton, &QToolButton::clicked, this, &Self::OnNextButtonClicked);
connect(m_Ui->loadButton, &QPushButton::clicked, this, &Self::OnLoadButtonClicked);
connect(m_FileSystemWatcher, &QFileSystemWatcher::directoryChanged, this, &Self::OnResultDirectoryChanged);
auto* prevShortcut = new QShortcut(QKeySequence(Qt::CTRL | Qt::ALT | Qt::Key::Key_P), this);
connect(prevShortcut, &QShortcut::activated, this, &Self::OnPreviousTaskShortcutActivated);
auto* prevUndoneShortcut = new QShortcut(QKeySequence(Qt::CTRL | Qt::SHIFT | Qt::Key::Key_P), this);
connect(prevUndoneShortcut, &QShortcut::activated, this, &Self::OnPreviousTaskShortcutActivated);
auto* nextShortcut = new QShortcut(QKeySequence(Qt::CTRL | Qt::ALT | Qt::Key::Key_N), this);
connect(nextShortcut, &QShortcut::activated, this, &Self::OnNextTaskShortcutActivated);
auto* nextUndoneShortcut = new QShortcut(QKeySequence(Qt::CTRL | Qt::SHIFT | Qt::Key::Key_N), this);
connect(nextUndoneShortcut, &QShortcut::activated, this, &Self::OnNextTaskShortcutActivated);
auto* loadShortcut = new QShortcut(QKeySequence(Qt::CTRL | Qt::ALT | Qt::Key::Key_L), this);
connect(loadShortcut, &QShortcut::activated, this, &Self::OnLoadTaskShortcutActivated);
-
- this->OnSelectionChanged(m_Ui->selectionWidget->GetSelectedNodes());
}
QmitkSegmentationTaskListWidget::~QmitkSegmentationTaskListWidget()
{
}
+void QmitkSegmentationTaskListWidget::SetDataStorage(mitk::DataStorage* dataStorage)
+{
+ m_DataStorage = dataStorage;
+ m_Ui->selectionWidget->SetDataStorage(dataStorage); // Triggers OnSelectionChanged()
+}
+
void QmitkSegmentationTaskListWidget::OnUnsavedChangesSaved()
{
if (m_UnsavedChanges)
{
m_UnsavedChanges = false;
if (this->ActiveTaskIsShown())
this->UpdateDetailsLabel();
}
}
/* Make sure that the widget transitions into a valid state whenever the
* selection changes.
*/
void QmitkSegmentationTaskListWidget::OnSelectionChanged(const QmitkSingleNodeSelectionWidget::NodeList& nodes)
{
this->UnloadTasks();
this->ResetControls();
if (!nodes.empty())
{
m_TaskListNode = nodes.front();
auto taskList = dynamic_cast(m_TaskListNode->GetData());
if (taskList != nullptr)
{
this->OnTaskListChanged(taskList);
return;
}
}
this->SetTaskList(nullptr);
m_TaskListNode = nullptr;
}
/* Reset all controls to a default state as a common basis for further
* adjustments.
*/
void QmitkSegmentationTaskListWidget::ResetControls()
{
m_Ui->progressBar->setEnabled(false);
m_Ui->progressBar->setFormat("");
m_Ui->progressBar->setValue(0);
m_Ui->progressBar->setMaximum(1);
m_Ui->previousButton->setEnabled(false);
m_Ui->nextButton->setEnabled(false);
this->UpdateLoadButton();
this->UpdateDetailsLabel();
}
/* If the segmentation task changed, reset all member variables to expected
* default values and reset the file system watcher.
*/
void QmitkSegmentationTaskListWidget::SetTaskList(mitk::SegmentationTaskList* taskList)
{
if (m_TaskList != taskList)
{
m_TaskList = taskList;
if (taskList != nullptr)
{
this->SetCurrentTaskIndex(0);
}
else
{
this->SetCurrentTaskIndex(std::nullopt);
}
this->ResetFileSystemWatcher();
}
}
void QmitkSegmentationTaskListWidget::ResetFileSystemWatcher()
{
auto paths = m_FileSystemWatcher->directories();
if (!paths.empty())
m_FileSystemWatcher->removePaths(paths);
if (m_TaskList.IsNotNull())
{
for (const auto& task : *m_TaskList)
{
auto resultPath = m_TaskList->GetAbsolutePath(task.GetResult()).remove_filename();
if (!std::filesystem::exists(resultPath))
{
try
{
std::filesystem::create_directories(resultPath);
}
catch (const std::filesystem::filesystem_error& e)
{
MITK_ERROR << e.what();
}
}
if (std::filesystem::exists(resultPath))
m_FileSystemWatcher->addPath(QString::fromStdString(resultPath.string()));
}
}
}
void QmitkSegmentationTaskListWidget::OnResultDirectoryChanged(const QString&)
{
// TODO: If a segmentation was modified ("Unsaved changes"), saved ("Done"), and then the file is deleted, the status should be "Unsaved changes" instead of "Not done".
this->UpdateProgressBar();
this->UpdateDetailsLabel();
}
void QmitkSegmentationTaskListWidget::UpdateProgressBar()
{
int progress = 0;
for (size_t i = 0; i < m_TaskList->GetNumberOfTasks(); ++i)
{
if (m_TaskList->IsDone(i))
++progress;
}
m_Ui->progressBar->setValue(progress);
}
/* Provided that a valid segmentation task list is currently selected and the
* widget is in its default state, update all controls accordingly.
* TODO: Then, load the first unfinished task, if any.
*/
void QmitkSegmentationTaskListWidget::OnTaskListChanged(mitk::SegmentationTaskList* taskList)
{
this->SetTaskList(taskList);
const auto numTasks = taskList->GetNumberOfTasks();
m_Ui->progressBar->setMaximum(numTasks);
m_Ui->progressBar->setFormat(QStringLiteral("%v/%m Task(s) done"));
m_Ui->progressBar->setEnabled(true);
this->UpdateProgressBar();
m_Ui->loadButton->setEnabled(true);
if (numTasks > 1)
m_Ui->nextButton->setEnabled(true);
// TODO: This line should be enough but it is happening too early even before
// the RenderingManager has any registered render windows, resulting in mismatching
// renderer and data geometries.
// this->LoadNextUnfinishedTask();
}
/* If possible, change the currently displayed task to the previous task.
* Enable/disable navigation buttons according to the task's position.
*/
void QmitkSegmentationTaskListWidget::OnPreviousButtonClicked()
{
auto current = m_CurrentTaskIndex.value();
// If the shift modifier key is pressed, look for the previous undone task.
if (QApplication::queryKeyboardModifiers().testFlag(Qt::ShiftModifier))
{
if (current > 0)
{
for (decltype(current) i = current; i > 0; --i)
{
if (!m_TaskList->IsDone(i - 1))
{
this->SetCurrentTaskIndex(i - 1);
break;
}
}
}
}
else
{
if (current != 0)
this->SetCurrentTaskIndex(current - 1);
}
this->UpdateNavigationButtons();
}
/* If possible, change the currently displayed task to the next task.
* Enable/disable navigation buttons according to the task's position.
*/
void QmitkSegmentationTaskListWidget::OnNextButtonClicked()
{
const auto numTasks = m_TaskList->GetNumberOfTasks();
auto current = m_CurrentTaskIndex.value();
// If the shift modifier key is pressed, look for the next undone task.
if (QApplication::queryKeyboardModifiers().testFlag(Qt::ShiftModifier))
{
for (std::remove_const_t i = current + 1; i < numTasks; ++i)
{
if (!m_TaskList->IsDone(i))
{
this->SetCurrentTaskIndex(i);
break;
}
}
}
else
{
if (current < numTasks - 1)
this->SetCurrentTaskIndex(current + 1);
}
this->UpdateNavigationButtons();
}
void QmitkSegmentationTaskListWidget::UpdateNavigationButtons()
{
if (m_TaskList.IsNull() || m_TaskList->GetNumberOfTasks() == 0)
{
m_Ui->previousButton->setEnabled(false);
m_Ui->nextButton->setEnabled(false);
return;
}
const auto maxIndex = m_TaskList->GetNumberOfTasks() - 1;
const auto current = m_CurrentTaskIndex.value();
m_Ui->previousButton->setEnabled(current != 0);
m_Ui->nextButton->setEnabled(current != maxIndex);
}
/* Update affected controls when the currently displayed task changed.
*/
void QmitkSegmentationTaskListWidget::OnCurrentTaskChanged()
{
this->UpdateLoadButton();
this->UpdateNavigationButtons();
this->UpdateDetailsLabel();
}
/* Update the load button according to the currently displayed task.
*/
void QmitkSegmentationTaskListWidget::UpdateLoadButton()
{
auto text = !this->ActiveTaskIsShown()
? QStringLiteral("Load task")
: QStringLiteral("Task");
if (m_CurrentTaskIndex.has_value())
{
const auto current = m_CurrentTaskIndex.value();
if (m_TaskList.IsNotNull())
{
text += QString(" %1/%2").arg(current + 1).arg(m_TaskList->GetNumberOfTasks());
if (m_TaskList->HasName(current))
text += QStringLiteral(":\n") + QString::fromStdString(m_TaskList->GetName(current));
}
m_Ui->loadButton->setDisabled(this->ActiveTaskIsShown());
}
else
{
m_Ui->loadButton->setEnabled(false);
}
m_Ui->loadButton->setText(text);
}
/* Update the details label according to the currently display task.
* The text is composed of the status of the task and a variable number
* of text blocks according to the optional values provided by the task.
*/
void QmitkSegmentationTaskListWidget::UpdateDetailsLabel()
{
if (!m_CurrentTaskIndex.has_value())
{
m_Ui->detailsLabel->clear();
return;
}
const auto current = m_CurrentTaskIndex.value();
bool isDone = m_TaskList->IsDone(current);
auto details = QString("Status: %1 / ").arg(this->ActiveTaskIsShown()
? ColorString("Active", Qt::white, QColor(Qt::green).darker())
: ColorString("Inactive", Qt::white, QColor(Qt::red).darker()));
if (m_UnsavedChanges && this->ActiveTaskIsShown())
{
details += QString("%1
").arg(ColorString("Unsaved changes", Qt::white, QColor(Qt::red).darker()));
}
else
{
details += QString("%1
").arg(isDone
? ColorString("Done", Qt::white, QColor(Qt::green).darker())
: ColorString("Not done", Qt::white, QColor(Qt::red).darker()));
}
if (m_TaskList->HasDescription(current))
details += QString("Description: %1
").arg(QString::fromStdString(m_TaskList->GetDescription(current)));
QStringList stringList;
if (m_TaskList->HasImage(current))
stringList << QString::fromStdString("Image: " + m_TaskList->GetImage(current).string());
if (m_TaskList->HasSegmentation(current))
stringList << QString::fromStdString("Segmentation: " + m_TaskList->GetSegmentation(current).string());
if (m_TaskList->HasLabelName(current))
stringList << QString::fromStdString("Label name: " + m_TaskList->GetLabelName(current));
if (m_TaskList->HasLabelNameSuggestions(current))
stringList << QString::fromStdString("Label name suggestions: " + m_TaskList->GetLabelNameSuggestions(current).string());
if (m_TaskList->HasPreset(current))
stringList << QString::fromStdString("Label set preset: " + m_TaskList->GetPreset(current).string());
if (m_TaskList->HasDynamic(current))
stringList << QString("Segmentation type: %1").arg(m_TaskList->GetDynamic(current) ? "Dynamic" : "Static");
if (!stringList.empty())
details += QString("%1
").arg(stringList.join(QStringLiteral("
")));
m_Ui->detailsLabel->setText(details);
}
/* Load/activate the currently displayed task. Unload all data nodes from
* previously active tasks first, but spare and reuse the image if possible.
*/
void QmitkSegmentationTaskListWidget::OnLoadButtonClicked()
{
if (!this->HandleUnsavedChanges() || m_UnsavedChanges)
return;
m_Ui->loadButton->setEnabled(false);
QApplication::setOverrideCursor(Qt::BusyCursor);
this->LoadTask(this->GetImageDataNode(m_CurrentTaskIndex.value()));
QApplication::restoreOverrideCursor();
}
/* If present, return the image data node for the task with the specified
* index. Otherwise, return nullptr.
*/
mitk::DataNode* QmitkSegmentationTaskListWidget::GetImageDataNode(size_t index) const
{
const auto imagePath = m_TaskList->GetAbsolutePath(m_TaskList->GetImage(index));
- auto imageNodes = GetDataStorage()->GetDerivations(m_TaskListNode, mitk::NodePredicateFunction::New([imagePath](const mitk::DataNode* node) {
+ auto imageNodes = m_DataStorage->GetDerivations(m_TaskListNode, mitk::NodePredicateFunction::New([imagePath](const mitk::DataNode* node) {
return imagePath == GetInputLocation(node->GetData());
}));
return !imageNodes->empty()
? imageNodes->front()
: nullptr;
}
/* If present, return the segmentation data node for the task with the
* specified index. Otherwise, return nullptr.
*/
mitk::DataNode* QmitkSegmentationTaskListWidget::GetSegmentationDataNode(size_t index) const
{
const auto* imageNode = this->GetImageDataNode(index);
if (imageNode != nullptr)
{
- auto segmentations = GetDataStorage()->GetDerivations(imageNode, mitk::TNodePredicateDataType::New());
+ auto segmentations = m_DataStorage->GetDerivations(imageNode, mitk::TNodePredicateDataType::New());
if (!segmentations->empty())
return segmentations->front();
}
return nullptr;
}
/* Unload all task data nodes but spare the passed image data node.
*/
void QmitkSegmentationTaskListWidget::UnloadTasks(const mitk::DataNode* skip)
{
this->UnsubscribeFromActiveSegmentation();
if (m_TaskListNode.IsNotNull())
{
- mitk::DataStorage::Pointer dataStorage = GetDataStorage();
-
- auto imageNodes = dataStorage->GetDerivations(m_TaskListNode, mitk::TNodePredicateDataType::New());
+ auto imageNodes = m_DataStorage->GetDerivations(m_TaskListNode, mitk::TNodePredicateDataType::New());
for (auto imageNode : *imageNodes)
{
- dataStorage->Remove(dataStorage->GetDerivations(imageNode, nullptr, false));
+ m_DataStorage->Remove(m_DataStorage->GetDerivations(imageNode, nullptr, false));
if (imageNode != skip)
- dataStorage->Remove(imageNode);
+ m_DataStorage->Remove(imageNode);
}
}
this->SetActiveTaskIndex(std::nullopt);
}
void QmitkSegmentationTaskListWidget::LoadNextUnfinishedTask()
{
const auto current = m_CurrentTaskIndex.value();
const auto numTasks = m_TaskList->GetNumberOfTasks();
for (size_t unboundNext = current; unboundNext < current + numTasks; ++unboundNext)
{
auto next = unboundNext % numTasks;
if (!m_TaskList->IsDone(next))
{
this->SetCurrentTaskIndex(next);
this->OnLoadButtonClicked();
break;
}
}
}
/* Load/activate the currently displayed task. The task must specify
* an image. The segmentation is either created from scratch with an optional
* name for the first label, possibly based on a label set preset specified by
* the task, or loaded as specified by the task. If a result file does
* exist, it is chosen as segmentation instead.
*/
void QmitkSegmentationTaskListWidget::LoadTask(mitk::DataNode::Pointer imageNode)
{
this->UnloadTasks(imageNode);
const auto current = m_CurrentTaskIndex.value();
mitk::Image::Pointer image;
mitk::LabelSetImage::Pointer segmentation;
try
{
if (imageNode.IsNull())
{
const auto path = m_TaskList->GetAbsolutePath(m_TaskList->GetImage(current));
image = mitk::IOUtil::Load(path.string());
}
const auto path = m_TaskList->GetAbsolutePath(m_TaskList->GetResult(current));
const auto interimPath = m_TaskList->GetInterimPath(path);
if (std::filesystem::exists(path))
{
segmentation = mitk::IOUtil::Load(path.string());
}
else if (std::filesystem::exists(interimPath))
{
segmentation = mitk::IOUtil::Load(interimPath.string());
}
else if (m_TaskList->HasSegmentation(current))
{
const auto path = m_TaskList->GetAbsolutePath(m_TaskList->GetSegmentation(current));
segmentation = mitk::IOUtil::Load(path.string());
}
}
catch (const mitk::Exception&)
{
return;
}
- auto dataStorage = GetDataStorage();
-
if (imageNode.IsNull())
{
imageNode = mitk::DataNode::New();
imageNode->SetData(image);
- dataStorage->Add(imageNode, m_TaskListNode);
+ m_DataStorage->Add(imageNode, m_TaskListNode);
mitk::RenderingManager::GetInstance()->InitializeViews(image->GetTimeGeometry());
}
else
{
image = static_cast(imageNode->GetData());
}
auto name = "Task " + std::to_string(current + 1);
imageNode->SetName(name);
if (segmentation.IsNull())
{
mitk::Image::ConstPointer templateImage = image;
if (templateImage->GetDimension() > 3)
{
if (m_TaskList->HasDynamic(current))
{
if (!m_TaskList->GetDynamic(current))
templateImage = mitk::SegmentationHelper::GetStaticSegmentationTemplate(image);
}
else
{
QmitkStaticDynamicSegmentationDialog dialog(this);
dialog.SetReferenceImage(templateImage);
dialog.exec();
templateImage = dialog.GetSegmentationTemplate();
}
}
auto segmentationNode = mitk::LabelSetImageHelper::CreateNewSegmentationNode(imageNode, templateImage, name);
segmentation = static_cast(segmentationNode->GetData());
if (m_TaskList->HasPreset(current))
{
const auto path = m_TaskList->GetAbsolutePath(m_TaskList->GetPreset(current));
mitk::LabelSetIOHelper::LoadLabelSetImagePreset(path.string(), segmentation);
}
else
{
auto label = mitk::LabelSetImageHelper::CreateNewLabel(segmentation);
if (m_TaskList->HasLabelName(current))
label->SetName(m_TaskList->GetLabelName(current));
segmentation->GetActiveLabelSet()->AddLabel(label);
}
- dataStorage->Add(segmentationNode, imageNode);
+ m_DataStorage->Add(segmentationNode, imageNode);
}
else
{
auto segmentationNode = mitk::DataNode::New();
segmentationNode->SetName(name);
segmentationNode->SetData(segmentation);
- dataStorage->Add(segmentationNode, imageNode);
+ m_DataStorage->Add(segmentationNode, imageNode);
}
// Workaround for T29431. Remove when T26953 is fixed.
mitk::DICOMQIPropertyHelper::DeriveDICOMSourceProperties(image, segmentation);
auto prefs = GetSegmentationPreferences();
if (prefs != nullptr)
{
if (m_TaskList->HasLabelNameSuggestions(current))
{
auto path = m_TaskList->GetAbsolutePath(m_TaskList->GetLabelNameSuggestions(current));
prefs->PutBool("default label naming", false);
prefs->Put("label suggestions", path.string());
prefs->PutBool("replace standard suggestions", true);
prefs->PutBool("suggest once", true);
}
else
{
prefs->PutBool("default label naming", true);
prefs->Put("label suggestions", "");
}
}
m_UnsavedChanges = false;
this->SetActiveTaskIndex(current);
this->SubscribeToActiveSegmentation();
this->OnCurrentTaskChanged();
}
void QmitkSegmentationTaskListWidget::SubscribeToActiveSegmentation()
{
if (m_ActiveTaskIndex.has_value())
{
auto segmentationNode = this->GetSegmentationDataNode(m_ActiveTaskIndex.value());
if (segmentationNode != nullptr)
{
auto segmentation = static_cast(segmentationNode->GetData());
auto command = itk::SimpleMemberCommand::New();
command->SetCallbackFunction(this, &QmitkSegmentationTaskListWidget::OnSegmentationModified);
m_SegmentationModifiedObserverTag = segmentation->AddObserver(itk::ModifiedEvent(), command);
}
}
}
void QmitkSegmentationTaskListWidget::UnsubscribeFromActiveSegmentation()
{
if (m_ActiveTaskIndex.has_value() && m_SegmentationModifiedObserverTag.has_value())
{
auto segmentationNode = this->GetSegmentationDataNode(m_ActiveTaskIndex.value());
if (segmentationNode != nullptr)
{
auto segmentation = static_cast(segmentationNode->GetData());
segmentation->RemoveObserver(m_SegmentationModifiedObserverTag.value());
}
m_SegmentationModifiedObserverTag.reset();
}
}
void QmitkSegmentationTaskListWidget::OnSegmentationModified()
{
if (!m_UnsavedChanges)
{
m_UnsavedChanges = true;
if (m_ActiveTaskIndex.value() == m_CurrentTaskIndex)
this->UpdateDetailsLabel();
}
}
void QmitkSegmentationTaskListWidget::SetActiveTaskIndex(const std::optional& index)
{
if (m_ActiveTaskIndex != index)
{
m_ActiveTaskIndex = index;
emit ActiveTaskChanged(m_ActiveTaskIndex);
}
}
void QmitkSegmentationTaskListWidget::SetCurrentTaskIndex(const std::optional& index)
{
if (m_CurrentTaskIndex != index)
{
m_CurrentTaskIndex = index;
this->OnCurrentTaskChanged();
emit CurrentTaskChanged(m_CurrentTaskIndex);
}
}
bool QmitkSegmentationTaskListWidget::ActiveTaskIsShown() const
{
return m_ActiveTaskIndex.has_value() && m_CurrentTaskIndex.has_value() && m_ActiveTaskIndex == m_CurrentTaskIndex;
}
bool QmitkSegmentationTaskListWidget::HandleUnsavedChanges(const QString& alternativeTitle)
{
if (m_UnsavedChanges)
{
const auto active = m_ActiveTaskIndex.value();
const auto current = m_CurrentTaskIndex.value();
QString title;
if (alternativeTitle.isEmpty())
{
title = QString("Load task %1").arg(current + 1);
if (m_TaskList->HasName(current))
title += ": " + QString::fromStdString(m_TaskList->GetName(current));
}
else
{
title = alternativeTitle;
}
auto text = QString("The currently active task %1 ").arg(active + 1);
if (m_TaskList->HasName(active))
text += "(" + QString::fromStdString(m_TaskList->GetName(active)) + ") ";
text += "has unsaved changes.";
auto reply = QMessageBox::question(this, title, text, QMessageBox::Save | QMessageBox::Discard | QMessageBox::Cancel, QMessageBox::Cancel);
switch (reply)
{
case QMessageBox::Save:
this->SaveActiveTask(!std::filesystem::exists(m_TaskList->GetResult(active)));
break;
case QMessageBox::Discard:
m_UnsavedChanges = false;
break;
default:
return false;
}
}
return true;
}
void QmitkSegmentationTaskListWidget::SaveActiveTask(bool saveAsIntermediateResult)
{
if (!m_ActiveTaskIndex.has_value())
return;
QApplication::setOverrideCursor(Qt::BusyCursor);
try
{
const auto active = m_ActiveTaskIndex.value();
m_TaskList->SaveTask(active, this->GetSegmentationDataNode(active)->GetData(), saveAsIntermediateResult);
this->OnUnsavedChangesSaved();
}
catch (const mitk::Exception& e)
{
MITK_ERROR << e;
}
QApplication::restoreOverrideCursor();
}
bool QmitkSegmentationTaskListWidget::OnPreShutdown()
{
return this->HandleUnsavedChanges(QStringLiteral("Application shutdown"));
}
void QmitkSegmentationTaskListWidget::OnPreviousTaskShortcutActivated()
{
m_Ui->previousButton->click();
}
void QmitkSegmentationTaskListWidget::OnNextTaskShortcutActivated()
{
m_Ui->nextButton->click();
}
void QmitkSegmentationTaskListWidget::OnLoadTaskShortcutActivated()
{
m_Ui->loadButton->click();
}
diff --git a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.h b/Modules/SegmentationUI/Qmitk/QmitkSegmentationTaskListWidget.h
similarity index 94%
rename from Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.h
rename to Modules/SegmentationUI/Qmitk/QmitkSegmentationTaskListWidget.h
index 4ce97a712b..d8aebca780 100644
--- a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.h
+++ b/Modules/SegmentationUI/Qmitk/QmitkSegmentationTaskListWidget.h
@@ -1,90 +1,93 @@
/*============================================================================
The Medical Imaging Interaction Toolkit (MITK)
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
============================================================================*/
#ifndef QmitkSegmentationTaskListWidget_h
#define QmitkSegmentationTaskListWidget_h
#include
#include
#include
#include
#include
class QFileSystemWatcher;
namespace Ui
{
class QmitkSegmentationTaskListWidget;
}
-class QmitkSegmentationTaskListWidget : public QWidget
+class MITKSEGMENTATIONUI_EXPORT QmitkSegmentationTaskListWidget : public QWidget
{
Q_OBJECT
public:
explicit QmitkSegmentationTaskListWidget(QWidget* parent = nullptr);
~QmitkSegmentationTaskListWidget() override;
+ void SetDataStorage(mitk::DataStorage* dataStorage);
+
bool ActiveTaskIsShown() const;
void LoadNextUnfinishedTask();
void SaveActiveTask(bool saveAsIntermediateResult = false);
bool OnPreShutdown();
signals:
void ActiveTaskChanged(const std::optional& index);
void CurrentTaskChanged(const std::optional& index);
private:
void OnSelectionChanged(const QmitkSingleNodeSelectionWidget::NodeList& nodes);
void ResetControls();
void SetTaskList(mitk::SegmentationTaskList* task);
void ResetFileSystemWatcher();
void OnResultDirectoryChanged(const QString&);
void UpdateProgressBar();
void OnTaskListChanged(mitk::SegmentationTaskList* task);
void OnPreviousButtonClicked();
void OnNextButtonClicked();
void OnCurrentTaskChanged();
void UpdateLoadButton();
void UpdateNavigationButtons();
void UpdateDetailsLabel();
void OnLoadButtonClicked();
mitk::DataNode* GetImageDataNode(size_t index) const;
void UnloadTasks(const mitk::DataNode* skip = nullptr);
void LoadTask(mitk::DataNode::Pointer imageNode = nullptr);
void SubscribeToActiveSegmentation();
void UnsubscribeFromActiveSegmentation();
void OnSegmentationModified();
void SetActiveTaskIndex(const std::optional& index);
void SetCurrentTaskIndex(const std::optional& index);
bool HandleUnsavedChanges(const QString& alternativeTitle = QString());
mitk::DataNode* GetSegmentationDataNode(size_t index) const;
void OnUnsavedChangesSaved();
void OnPreviousTaskShortcutActivated();
void OnNextTaskShortcutActivated();
void OnLoadTaskShortcutActivated();
Ui::QmitkSegmentationTaskListWidget* m_Ui;
QFileSystemWatcher* m_FileSystemWatcher;
+ mitk::DataStorage* m_DataStorage;
mitk::SegmentationTaskList::Pointer m_TaskList;
mitk::DataNode::Pointer m_TaskListNode;
std::optional m_CurrentTaskIndex;
std::optional m_ActiveTaskIndex;
std::optional m_SegmentationModifiedObserverTag;
bool m_UnsavedChanges;
};
#endif
diff --git a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.ui b/Modules/SegmentationUI/Qmitk/QmitkSegmentationTaskListWidget.ui
similarity index 100%
rename from Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationTaskListWidget.ui
rename to Modules/SegmentationUI/Qmitk/QmitkSegmentationTaskListWidget.ui
diff --git a/Modules/SegmentationUI/files.cmake b/Modules/SegmentationUI/files.cmake
index adfa9a06ad..08da87a365 100644
--- a/Modules/SegmentationUI/files.cmake
+++ b/Modules/SegmentationUI/files.cmake
@@ -1,99 +1,102 @@
set(CPP_FILES
Qmitk/QmitkSegWithPreviewToolGUIBase.cpp
Qmitk/QmitkMultiLabelSegWithPreviewToolGUIBase.cpp
Qmitk/QmitkBinaryThresholdToolGUIBase.cpp
Qmitk/QmitkBinaryThresholdToolGUI.cpp
Qmitk/QmitkBinaryThresholdULToolGUI.cpp
Qmitk/QmitkConfirmSegmentationDialog.cpp
Qmitk/QmitkCopyToClipBoardDialog.cpp
Qmitk/QmitkDrawPaintbrushToolGUI.cpp
Qmitk/QmitkErasePaintbrushToolGUI.cpp
Qmitk/QmitkEditableContourToolGUIBase.cpp
Qmitk/QmitkGrowCutToolGUI.cpp
Qmitk/QmitkLiveWireTool2DGUI.cpp
Qmitk/QmitkLassoToolGUI.cpp
Qmitk/QmitkOtsuTool3DGUI.cpp
Qmitk/QmitkPaintbrushToolGUI.cpp
Qmitk/QmitkPickingToolGUI.cpp
Qmitk/QmitkSlicesInterpolator.cpp
Qmitk/QmitkToolGUI.cpp
Qmitk/QmitkToolGUIArea.cpp
Qmitk/QmitkToolSelectionBox.cpp
Qmitk/QmitknnUNetFolderParser.cpp
Qmitk/QmitknnUNetToolGUI.cpp
Qmitk/QmitknnUNetWorker.cpp
Qmitk/QmitknnUNetGPU.cpp
Qmitk/QmitkSurfaceStampWidget.cpp
Qmitk/QmitkMaskStampWidget.cpp
Qmitk/QmitkStaticDynamicSegmentationDialog.cpp
Qmitk/QmitkSurfaceBasedInterpolatorWidget.cpp
Qmitk/QmitkSimpleLabelSetListWidget.cpp
+ Qmitk/QmitkSegmentationTaskListWidget.cpp
SegmentationUtilities/QmitkBooleanOperationsWidget.cpp
SegmentationUtilities/QmitkContourModelToImageWidget.cpp
SegmentationUtilities/QmitkImageMaskingWidget.cpp
SegmentationUtilities/QmitkMorphologicalOperationsWidget.cpp
SegmentationUtilities/QmitkSurfaceToImageWidget.cpp
SegmentationUtilities/QmitkSegmentationUtilityWidget.cpp
SegmentationUtilities/QmitkDataSelectionWidget.cpp
)
set(MOC_H_FILES
Qmitk/QmitkSegWithPreviewToolGUIBase.h
Qmitk/QmitkMultiLabelSegWithPreviewToolGUIBase.h
Qmitk/QmitkBinaryThresholdToolGUIBase.h
Qmitk/QmitkBinaryThresholdToolGUI.h
Qmitk/QmitkBinaryThresholdULToolGUI.h
Qmitk/QmitkConfirmSegmentationDialog.h
Qmitk/QmitkCopyToClipBoardDialog.h
Qmitk/QmitkDrawPaintbrushToolGUI.h
Qmitk/QmitkErasePaintbrushToolGUI.h
Qmitk/QmitkEditableContourToolGUIBase.h
Qmitk/QmitkGrowCutToolGUI.h
Qmitk/QmitkLiveWireTool2DGUI.h
Qmitk/QmitkLassoToolGUI.h
Qmitk/QmitkOtsuTool3DGUI.h
Qmitk/QmitkPaintbrushToolGUI.h
Qmitk/QmitkPickingToolGUI.h
Qmitk/QmitkSlicesInterpolator.h
Qmitk/QmitkToolGUI.h
Qmitk/QmitkToolGUIArea.h
Qmitk/QmitkToolSelectionBox.h
Qmitk/QmitknnUNetFolderParser.h
Qmitk/QmitknnUNetToolGUI.h
Qmitk/QmitknnUNetGPU.h
Qmitk/QmitknnUNetWorker.h
Qmitk/QmitknnUNetEnsembleLayout.h
Qmitk/QmitkSurfaceStampWidget.h
Qmitk/QmitkMaskStampWidget.h
Qmitk/QmitkStaticDynamicSegmentationDialog.h
Qmitk/QmitkSurfaceBasedInterpolatorWidget.h
Qmitk/QmitkSimpleLabelSetListWidget.h
+ Qmitk/QmitkSegmentationTaskListWidget.h
SegmentationUtilities/QmitkBooleanOperationsWidget.h
SegmentationUtilities/QmitkContourModelToImageWidget.h
SegmentationUtilities/QmitkImageMaskingWidget.h
SegmentationUtilities/QmitkMorphologicalOperationsWidget.h
SegmentationUtilities/QmitkSurfaceToImageWidget.h
SegmentationUtilities/QmitkSegmentationUtilityWidget.h
SegmentationUtilities/QmitkDataSelectionWidget.h
)
set(UI_FILES
Qmitk/QmitkConfirmSegmentationDialog.ui
Qmitk/QmitkGrowCutToolWidgetControls.ui
Qmitk/QmitkOtsuToolWidgetControls.ui
Qmitk/QmitkSurfaceStampWidgetGUIControls.ui
Qmitk/QmitkMaskStampWidgetGUIControls.ui
Qmitk/QmitkSurfaceBasedInterpolatorWidgetGUIControls.ui
Qmitk/QmitknnUNetToolGUIControls.ui
Qmitk/QmitkEditableContourToolGUIControls.ui
+ Qmitk/QmitkSegmentationTaskListWidget.ui
SegmentationUtilities/QmitkBooleanOperationsWidgetControls.ui
SegmentationUtilities/QmitkContourModelToImageWidgetControls.ui
SegmentationUtilities/QmitkImageMaskingWidgetControls.ui
SegmentationUtilities/QmitkMorphologicalOperationsWidgetControls.ui
SegmentationUtilities/QmitkSurfaceToImageWidgetControls.ui
SegmentationUtilities/QmitkDataSelectionWidgetControls.ui
)
set(QRC_FILES
resources/SegmentationUI.qrc
)
diff --git a/Plugins/org.mitk.gui.qt.flow.segmentation/files.cmake b/Plugins/org.mitk.gui.qt.flow.segmentation/files.cmake
index 965a81bd30..45e6d49d05 100644
--- a/Plugins/org.mitk.gui.qt.flow.segmentation/files.cmake
+++ b/Plugins/org.mitk.gui.qt.flow.segmentation/files.cmake
@@ -1,49 +1,46 @@
set(SRC_CPP_FILES
)
set(INTERNAL_CPP_FILES
org_mitk_gui_qt_flow_segmentation_Activator.cpp
QmitkSegmentationFlowControlView.cpp
- QmitkSegmentationTaskListWidget.cpp
perspectives/QmitkFlowSegmentationPerspective.cpp
)
set(UI_FILES
src/internal/QmitkSegmentationFlowControlView.ui
- src/internal/QmitkSegmentationTaskListWidget.ui
)
set(MOC_H_FILES
src/internal/org_mitk_gui_qt_flow_segmentation_Activator.h
src/internal/QmitkSegmentationFlowControlView.h
- src/internal/QmitkSegmentationTaskListWidget.h
src/internal/perspectives/QmitkFlowSegmentationPerspective.h
)
# list of resource files which can be used by the plug-in
# system without loading the plug-ins shared library,
# for example the icon used in the menu and tabs for the
# plug-in views in the workbench
set(CACHED_RESOURCE_FILES
resources/icon.svg
plugin.xml
resources/perspectives/segmentation_icon.svg
)
# list of Qt .qrc files which contain additional resources
# specific to this plugin
set(QRC_FILES
resources/SegmentationTaskList.qrc
)
set(CPP_FILES )
foreach(file ${SRC_CPP_FILES})
set(CPP_FILES ${CPP_FILES} src/${file})
endforeach(file ${SRC_CPP_FILES})
foreach(file ${INTERNAL_CPP_FILES})
set(CPP_FILES ${CPP_FILES} src/internal/${file})
endforeach(file ${INTERNAL_CPP_FILES})
diff --git a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.cpp b/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.cpp
index 5fbb4736b0..71e81f6602 100644
--- a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.cpp
+++ b/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.cpp
@@ -1,208 +1,209 @@
/*============================================================================
The Medical Imaging Interaction Toolkit (MITK)
Copyright (c) German Cancer Research Center (DKFZ)
All rights reserved.
Use of this source code is governed by a 3-clause BSD license that can be
found in the LICENSE file.
============================================================================*/
#include "org_mitk_gui_qt_flow_segmentation_Activator.h"
// Blueberry
#include
#include
#include
#include
#include
//MITK
#include
#include
#include
#include
#include
#include
#include
#include
// Qmitk
#include "QmitkSegmentationFlowControlView.h"
#include
// Qt
#include
#include
#include
const std::string QmitkSegmentationFlowControlView::VIEW_ID = "org.mitk.views.flow.control";
QmitkSegmentationFlowControlView::QmitkSegmentationFlowControlView()
: m_Controls(new Ui::SegmentationFlowControlView),
m_Parent(nullptr)
{
auto notHelperObject = mitk::NodePredicateNot::New(
mitk::NodePredicateProperty::New("helper object"));
m_SegmentationPredicate = mitk::NodePredicateAnd::New(
mitk::TNodePredicateDataType::New(),
notHelperObject);
m_SegmentationTaskListPredicate = mitk::NodePredicateAnd::New(
mitk::TNodePredicateDataType::New(),
notHelperObject);
berry::PlatformUI::GetWorkbench()->AddWorkbenchListener(this);
}
QmitkSegmentationFlowControlView::~QmitkSegmentationFlowControlView()
{
berry::PlatformUI::GetWorkbench()->RemoveWorkbenchListener(this);
}
bool QmitkSegmentationFlowControlView::PreShutdown(berry::IWorkbench*, bool)
{
return m_Controls->segmentationTaskListWidget != nullptr
? m_Controls->segmentationTaskListWidget->OnPreShutdown()
: true;
}
void QmitkSegmentationFlowControlView::SetFocus()
{
m_Controls->btnStoreAndAccept->setFocus();
}
void QmitkSegmentationFlowControlView::CreateQtPartControl(QWidget* parent)
{
m_Controls->setupUi(parent);
m_Parent = parent;
using Self = QmitkSegmentationFlowControlView;
connect(m_Controls->btnStore, &QPushButton::clicked, this, &Self::OnStoreButtonClicked);
connect(m_Controls->btnStoreAndAccept, &QPushButton::clicked, this, &Self::OnAcceptButtonClicked);
connect(m_Controls->segmentationTaskListWidget, &QmitkSegmentationTaskListWidget::ActiveTaskChanged, this, &Self::OnActiveTaskChanged);
connect(m_Controls->segmentationTaskListWidget, &QmitkSegmentationTaskListWidget::CurrentTaskChanged, this, &Self::OnCurrentTaskChanged);
auto* prevShortcut = new QShortcut(QKeySequence(Qt::CTRL | Qt::ALT | Qt::Key::Key_S), parent);
connect(prevShortcut, &QShortcut::activated, this, &Self::OnStoreInterimResultShortcutActivated);
auto* nextShortcut = new QShortcut(QKeySequence(Qt::CTRL | Qt::ALT | Qt::Key::Key_A), parent);
connect(nextShortcut, &QShortcut::activated, this, &Self::OnAcceptSegmentationShortcutActivated);
m_Controls->btnStore->setIcon(berry::QtStyleManager::ThemeIcon(QStringLiteral(":/org_mitk_icons/icons/awesome/scalable/actions/document-save.svg")));
m_Controls->btnStore->setVisible(false);
+ m_Controls->segmentationTaskListWidget->SetDataStorage(this->GetDataStorage());
m_Controls->segmentationTaskListWidget->setVisible(false);
m_Controls->labelStored->setVisible(false);
this->UpdateControls();
m_OutputDir = QString::fromStdString(mitk::BaseApplication::instance().config().getString("flow.outputdir", itksys::SystemTools::GetCurrentWorkingDirectory()));
m_OutputDir = QDir::fromNativeSeparators(m_OutputDir);
m_FileExtension = QString::fromStdString(mitk::BaseApplication::instance().config().getString("flow.outputextension", "nrrd"));
}
void QmitkSegmentationFlowControlView::OnStoreButtonClicked()
{
m_Controls->segmentationTaskListWidget->SaveActiveTask(true);
}
void QmitkSegmentationFlowControlView::OnAcceptButtonClicked()
{
if (m_Controls->segmentationTaskListWidget->isVisible())
{
auto* toolManager = mitk::ToolManagerProvider::GetInstance()->GetToolManager();
int activeToolId = -1;
if (toolManager != nullptr)
activeToolId = toolManager->GetActiveToolID();
m_Controls->segmentationTaskListWidget->SaveActiveTask();
m_Controls->segmentationTaskListWidget->LoadNextUnfinishedTask();
if (toolManager != nullptr)
toolManager->ActivateTool(activeToolId);
}
else
{
auto nodes = this->GetDataStorage()->GetSubset(m_SegmentationPredicate);
for (auto node : *nodes)
{
QString outputpath = m_OutputDir + "/" + QString::fromStdString(node->GetName()) + "." + m_FileExtension;
outputpath = QDir::toNativeSeparators(QDir::cleanPath(outputpath));
mitk::IOUtil::Save(node->GetData(), outputpath.toStdString());
}
m_Controls->labelStored->setVisible(true);
}
}
void QmitkSegmentationFlowControlView::OnActiveTaskChanged(const std::optional&)
{
this->UpdateControls();
}
void QmitkSegmentationFlowControlView::OnCurrentTaskChanged(const std::optional&)
{
this->UpdateControls();
}
void QmitkSegmentationFlowControlView::UpdateControls()
{
auto dataStorage = this->GetDataStorage();
auto hasTaskList = !dataStorage->GetSubset(m_SegmentationTaskListPredicate)->empty();
m_Controls->segmentationTaskListWidget->setVisible(hasTaskList);
if (hasTaskList)
{
auto activeTaskIsShown = m_Controls->segmentationTaskListWidget->ActiveTaskIsShown();
m_Controls->btnStore->setVisible(activeTaskIsShown);
m_Controls->btnStoreAndAccept->setEnabled(activeTaskIsShown);
}
else
{
auto hasSegmentation = !dataStorage->GetSubset(m_SegmentationPredicate)->empty();
m_Controls->btnStore->setVisible(false);
m_Controls->btnStoreAndAccept->setEnabled(hasSegmentation);
}
}
void QmitkSegmentationFlowControlView::NodeAdded(const mitk::DataNode* node)
{
if (dynamic_cast(node->GetData()) != nullptr)
this->UpdateControls();
}
void QmitkSegmentationFlowControlView::NodeChanged(const mitk::DataNode* node)
{
if (dynamic_cast(node->GetData()) != nullptr)
this->UpdateControls();
}
void QmitkSegmentationFlowControlView::NodeRemoved(const mitk::DataNode* node)
{
if (dynamic_cast(node->GetData()) != nullptr)
this->UpdateControls();
}
void QmitkSegmentationFlowControlView::OnStoreInterimResultShortcutActivated()
{
m_Controls->btnStore->click();
}
void QmitkSegmentationFlowControlView::OnAcceptSegmentationShortcutActivated()
{
m_Controls->btnStoreAndAccept->click();
}
diff --git a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.ui b/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.ui
index eaebffec27..e2a96650c9 100644
--- a/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.ui
+++ b/Plugins/org.mitk.gui.qt.flow.segmentation/src/internal/QmitkSegmentationFlowControlView.ui
@@ -1,133 +1,133 @@
SegmentationFlowControlView
0
0
268
324
-
Qt::Vertical
20
40
-
-
-
50
50
50
50
Save interim segmentation
32
32
-
0
50
Save and accept segmentation
Accept segmentation
32
32
-
<html><head/><body><p><span style=" font-size:12pt;">Segmentation accepted! Flow on...</span></p></body></html>
Qt::AlignCenter
-
Qt::Vertical
20
40
QmitkSegmentationTaskListWidget
QWidget
- internal/QmitkSegmentationTaskListWidget.h
+ QmitkSegmentationTaskListWidget.h
1
5
5
true
true
true