diff --git a/Core/Code/DataManagement/mitkPointSet.cpp b/Core/Code/DataManagement/mitkPointSet.cpp index e1e0510998..7f51b9d4da 100755 --- a/Core/Code/DataManagement/mitkPointSet.cpp +++ b/Core/Code/DataManagement/mitkPointSet.cpp @@ -1,710 +1,709 @@ /*========================================================================= Program: Medical Imaging & Interaction Toolkit Language: C++ Date: $Date$ Version: $Revision$ Copyright (c) German Cancer Research Center, Division of Medical and Biological Informatics. All rights reserved. See MITKCopyright.txt or http://www.mitk.org/copyright.html for details. This software is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the above copyright notices for more information. =========================================================================*/ #include "mitkPointSet.h" #include "mitkPointOperation.h" #include "mitkInteractionConst.h" #include mitk::PointSet::PointSet() { this->InitializeEmpty(); } mitk::PointSet::~PointSet() { this->ClearData(); } void mitk::PointSet::ClearData() { m_PointSetSeries.clear(); Superclass::ClearData(); } void mitk::PointSet::InitializeEmpty() { m_PointSetSeries.resize( 1 ); m_PointSetSeries[0] = DataType::New(); PointDataContainer::Pointer pointData = PointDataContainer::New(); m_PointSetSeries[0]->SetPointData( pointData ); m_CalculateBoundingBox = false; Superclass::InitializeTimeSlicedGeometry(1); m_Initialized = true; } bool mitk::PointSet::IsEmpty(unsigned int t) const { return IsInitialized() && (GetSize(t) == 0); } void mitk::PointSet::Expand( unsigned int timeSteps ) { // Check if the vector is long enough to contain the new element // at the given position. If not, expand it with sufficient pre-initialized // elements. // // NOTE: This method will never REDUCE the vector size; it should only // be used to make sure that the vector has enough elements to include the // specified time step. unsigned int oldSize = m_PointSetSeries.size(); if ( timeSteps > oldSize ) { Superclass::Expand( timeSteps ); m_PointSetSeries.resize( timeSteps ); for ( unsigned int i = oldSize; i < timeSteps; ++i ) { m_PointSetSeries[i] = DataType::New(); PointDataContainer::Pointer pointData = PointDataContainer::New(); m_PointSetSeries[i]->SetPointData( pointData ); } //if the size changes, then compute the bounding box m_CalculateBoundingBox = true; this->InvokeEvent( PointSetExtendTimeRangeEvent() ); } } unsigned int mitk::PointSet::GetPointSetSeriesSize() const { return m_PointSetSeries.size(); } int mitk::PointSet::GetSize( unsigned int t ) const { if ( t < m_PointSetSeries.size() ) { return m_PointSetSeries[t]->GetNumberOfPoints(); } else { return 0; } } mitk::PointSet::DataType::Pointer mitk::PointSet::GetPointSet( int t ) const { if ( t < (int)m_PointSetSeries.size() ) { return m_PointSetSeries[t]; } else { return NULL; } } int mitk::PointSet::SearchPoint( Point3D point, float distance, int t ) const { if ( t >= (int)m_PointSetSeries.size() ) { return -1; } // Out is the point which is checked to be the searched point PointType out; out.Fill( 0 ); PointType indexPoint; this->GetGeometry( t )->WorldToIndex(point, indexPoint); // Searching the first point in the Set, that is +- distance far away fro // the given point unsigned int i; PointsContainer::Iterator it, end; end = m_PointSetSeries[t]->GetPoints()->End(); int bestIndex = -1; distance = distance * distance; // To correct errors from converting index to world and world to index if (distance == 0.0) { distance = 0.000001; } ScalarType bestDist = distance; ScalarType dist, tmp; for ( it = m_PointSetSeries[t]->GetPoints()->Begin(), i = 0; it != end; ++it, ++i ) { bool ok = m_PointSetSeries[t]->GetPoints() ->GetElementIfIndexExists( it->Index(), &out ); if ( !ok ) { return -1; } else if ( indexPoint == out ) //if totally equal { return it->Index(); } //distance calculation tmp = out[0] - indexPoint[0]; dist = tmp * tmp; tmp = out[1] - indexPoint[1]; dist += tmp * tmp; tmp = out[2] - indexPoint[2]; dist += tmp * tmp; if ( dist < bestDist ) { bestIndex = it->Index(); bestDist = dist; } } return bestIndex; } mitk::PointSet::PointType mitk::PointSet::GetPoint( PointIdentifier id, int t ) const { PointType out; out.Fill(0); if ( (unsigned int) t >= m_PointSetSeries.size() ) { return out; } if ( m_PointSetSeries[t]->GetPoints()->IndexExists(id) ) { m_PointSetSeries[t]->GetPoint( id, &out ); this->GetGeometry(t)->IndexToWorld( out, out ); return out; } else { return out; } } bool mitk::PointSet ::GetPointIfExists( PointIdentifier id, PointType* point, int t ) const { if ( (unsigned int) t >= m_PointSetSeries.size() ) { return false; } if ( m_PointSetSeries[t]->GetPoints()->GetElementIfIndexExists(id, point) ) { this->GetGeometry( t )->IndexToWorld( *point, *point ); return true; } else { return false; } } void mitk::PointSet::SetPoint( PointIdentifier id, PointType point, int t ) { // Adapt the size of the data vector if necessary this->Expand( t+1 ); mitk::Point3D indexPoint; this->GetGeometry( t )->WorldToIndex( point, indexPoint ); m_PointSetSeries[t]->SetPoint( id, indexPoint ); PointDataType defaultPointData; defaultPointData.id = id; defaultPointData.selected = false; defaultPointData.pointSpec = mitk::PTUNDEFINED; m_PointSetSeries[t]->SetPointData( id, defaultPointData ); //boundingbox has to be computed anyway m_CalculateBoundingBox = true; this->Modified(); } void mitk::PointSet::SetPoint( PointIdentifier id, PointType point, PointSpecificationType spec, int t ) { // Adapt the size of the data vector if necessary this->Expand( t+1 ); mitk::Point3D indexPoint; this->GetGeometry( t )->WorldToIndex( point, indexPoint ); m_PointSetSeries[t]->SetPoint( id, indexPoint ); PointDataType defaultPointData; defaultPointData.id = id; defaultPointData.selected = false; defaultPointData.pointSpec = spec; m_PointSetSeries[t]->SetPointData( id, defaultPointData ); //boundingbox has to be computed anyway m_CalculateBoundingBox = true; this->Modified(); } void mitk::PointSet::InsertPoint( PointIdentifier id, PointType point, int t ) { if ( (unsigned int) t < m_PointSetSeries.size() ) { mitk::Point3D indexPoint; mitk::Geometry3D* tempGeometry = this->GetGeometry( t ); if (tempGeometry == NULL) { LOG_INFO<< __FILE__ << ", l." << __LINE__ << ": GetGeometry of "<< t <<" returned NULL!" << std::endl; return; } tempGeometry->WorldToIndex( point, indexPoint ); m_PointSetSeries[t]->GetPoints()->InsertElement( id, indexPoint ); PointDataType defaultPointData; defaultPointData.id = id; defaultPointData.selected = false; defaultPointData.pointSpec = mitk::PTUNDEFINED; m_PointSetSeries[t]->GetPointData()->InsertElement(id, defaultPointData); //boundingbox has to be computed anyway m_CalculateBoundingBox = true; this->Modified(); } } void mitk::PointSet::InsertPoint( PointIdentifier id, PointType point, PointSpecificationType spec, int t ) { if ( (unsigned int) t < m_PointSetSeries.size() ) { mitk::Point3D indexPoint; mitk::Geometry3D* tempGeometry = this->GetGeometry( t ); if (tempGeometry == NULL) { LOG_INFO<< __FILE__ << ", l." << __LINE__ << ": GetGeometry of "<< t <<" returned NULL!" << std::endl; return; } tempGeometry->WorldToIndex( point, indexPoint ); m_PointSetSeries[t]->GetPoints()->InsertElement( id, indexPoint ); PointDataType defaultPointData; defaultPointData.id = id; defaultPointData.selected = false; defaultPointData.pointSpec = spec; m_PointSetSeries[t]->GetPointData()->InsertElement(id, defaultPointData); //boundingbox has to be computed anyway m_CalculateBoundingBox = true; this->Modified(); } } bool mitk::PointSet::SwapPointPosition( PointIdentifier id, bool moveUpwards, int t ) { if(IndexExists(id, t) ) { PointType point = GetPoint(id,t); if(moveUpwards) {//up if(IndexExists(id-1,t)) { InsertPoint(id, GetPoint(id - 1, t), t); InsertPoint(id-1,point,t); this->Modified(); return true; } } else {//down if(IndexExists(id+1,t)) { InsertPoint(id, GetPoint(id + 1, t), t); InsertPoint(id+1,point,t); this->Modified(); return true; } } - - return false; } + return false; } bool mitk::PointSet::IndexExists( int position, int t ) const { if ( (unsigned int) t < m_PointSetSeries.size() ) { return m_PointSetSeries[t]->GetPoints()->IndexExists( position ); } else { return false; } } bool mitk::PointSet::GetSelectInfo( int position, int t ) const { if ( this->IndexExists( position, t ) ) { PointDataType pointData = { 0, false, PTUNDEFINED }; m_PointSetSeries[t]->GetPointData( position, &pointData ); return pointData.selected; } else { return false; } } void mitk::PointSet::SetSelectInfo( int position, bool selected, int t ) { if ( this->IndexExists( position, t ) ) { // timeStep to ms ScalarType timeInMS = this->GetTimeSlicedGeometry()->TimeStepToMS( t ); // point Point3D point = this->GetPoint( position, t ); PointOperation* op; if (selected) { op = new mitk::PointOperation(OpSELECTPOINT, timeInMS, point, position ); } else { op = new mitk::PointOperation(OpDESELECTPOINT, timeInMS, point, position ); } this->ExecuteOperation( op ); } } int mitk::PointSet::GetNumberOfSelected( int t ) const { if ( (unsigned int) t >= m_PointSetSeries.size() ) { return 0; } int numberOfSelected = 0; PointDataIterator it; for ( it = m_PointSetSeries[t]->GetPointData()->Begin(); it != m_PointSetSeries[t]->GetPointData()->End(); it++ ) { if (it->Value().selected == true) { ++numberOfSelected; } } return numberOfSelected; } int mitk::PointSet::SearchSelectedPoint( int t ) const { if ( (unsigned int) t >= m_PointSetSeries.size() ) { return -1; } PointDataIterator it; for ( it = m_PointSetSeries[t]->GetPointData()->Begin(); it != m_PointSetSeries[t]->GetPointData()->End(); it++ ) { if ( it->Value().selected == true ) { return it->Index(); } } return -1; } void mitk::PointSet::ExecuteOperation( Operation* operation ) { int timeStep = -1; mitkCheckOperationTypeMacro(PointOperation, operation, pointOp); if ( pointOp ) { timeStep = this->GetTimeSlicedGeometry() ->MSToTimeStep( pointOp->GetTimeInMS() ); } if ( timeStep < 0 ) { LOG_ERROR << "Time step (" << timeStep << ") outside of PointSet time bounds" << std::endl; return; } switch (operation->GetOperationType()) { case OpNOTHING: break; case OpINSERT://inserts the point at the given position and selects it. { int position = pointOp->GetIndex(); PointType pt; pt.CastFrom(pointOp->GetPoint()); //transfer from world to index coordinates mitk::Geometry3D* geometry = this->GetGeometry( timeStep ); if (geometry == NULL) { LOG_INFO<<"mitkPointSet.cpp::L362: GetGeometry returned NULL!\n"; return; } geometry->WorldToIndex(pt, pt); m_PointSetSeries[timeStep]->GetPoints()->InsertElement(position, pt); PointDataType pointData = { pointOp->GetIndex(), pointOp->GetSelected(), pointOp->GetPointType() }; m_PointSetSeries[timeStep]->GetPointData() ->InsertElement(position, pointData); this->Modified(); //boundingbox has to be computed m_CalculateBoundingBox = true; this->InvokeEvent( PointSetAddEvent() ); this->OnPointSetChange(); } break; case OpMOVE://moves the point given by index { PointType pt; pt.CastFrom(pointOp->GetPoint()); //transfer from world to index coordinates this->GetGeometry( timeStep )->WorldToIndex(pt, pt); m_PointSetSeries[timeStep]->SetPoint(pointOp->GetIndex(), pt); this->OnPointSetChange(); this->Modified(); //boundingbox has to be computed anyway m_CalculateBoundingBox = true; this->InvokeEvent( PointSetMoveEvent() ); } break; case OpREMOVE://removes the point at given by position { m_PointSetSeries[timeStep]->GetPoints() ->DeleteIndex((unsigned)pointOp->GetIndex()); m_PointSetSeries[timeStep]->GetPointData() ->DeleteIndex((unsigned)pointOp->GetIndex()); this->OnPointSetChange(); this->Modified(); //boundingbox has to be computed anyway m_CalculateBoundingBox = true; this->InvokeEvent( PointSetRemoveEvent() ); } break; case OpSELECTPOINT://select the given point { PointDataType pointData = {0, false, PTUNDEFINED}; m_PointSetSeries[timeStep]->GetPointData(pointOp->GetIndex(), &pointData); pointData.selected = true; m_PointSetSeries[timeStep]->SetPointData(pointOp->GetIndex(), pointData); this->Modified(); } break; case OpDESELECTPOINT://unselect the given point { PointDataType pointData = {0, false, PTUNDEFINED}; m_PointSetSeries[timeStep]->GetPointData(pointOp->GetIndex(), &pointData); pointData.selected = false; m_PointSetSeries[timeStep]->SetPointData(pointOp->GetIndex(), pointData); this->Modified(); } break; case OpSETPOINTTYPE: { PointDataType pointData = {0, false, PTUNDEFINED}; m_PointSetSeries[timeStep]->GetPointData(pointOp->GetIndex(), &pointData); pointData.pointSpec = pointOp->GetPointType(); m_PointSetSeries[timeStep]->SetPointData(pointOp->GetIndex(), pointData); this->Modified(); } break; case OpMOVEPOINTUP: // move point position within the pointset { int position = SearchPoint(pointOp->GetPoint(), 0.0, timeStep); mitk::Point3D point1 = pointOp->GetPoint(); if(position >= 1) { mitk::Point3D point2 = m_PointSetSeries[timeStep]->GetPoints()->GetElement(position-1); m_PointSetSeries[timeStep]->GetPoints()->InsertElement(position-1,point1); m_PointSetSeries[timeStep]->GetPoints()->InsertElement(position,point2); this->Modified(); } } break; case OpMOVEPOINTDOWN: // move point position within the pointset { int position = SearchPoint(pointOp->GetPoint(), 0.0, timeStep); mitk::Point3D point1 = pointOp->GetPoint(); if(position >= 0 && GetSize(timeStep) > position) { mitk::Point3D point2 = m_PointSetSeries[timeStep]->GetPoints()->GetElement(position+1); m_PointSetSeries[timeStep]->GetPoints()->InsertElement(position+1,point1); m_PointSetSeries[timeStep]->GetPoints()->InsertElement(position,point2); this->Modified(); } } break; default: itkWarningMacro("mitkPointSet could not understrand the operation. Please check!"); break; } //to tell the mappers, that the data is modifierd and has to be updated //only call modified if anything is done, so call in cases //this->Modified(); mitk::OperationEndEvent endevent(operation); ((const itk::Object*)this)->InvokeEvent(endevent); //*todo has to be done here, cause of update-pipeline not working yet // As discussed lately, don't mess with the rendering from inside data structures //mitk::RenderingManager::GetInstance()->RequestUpdateAll(); } void mitk::PointSet::UpdateOutputInformation() { if ( this->GetSource( ) ) { this->GetSource( )->UpdateOutputInformation( ); } // // first make sure, that the associated time sliced geometry has // the same number of geometry 3d's as PointSets are present // mitk::TimeSlicedGeometry* timeGeometry = GetTimeSlicedGeometry(); if ( timeGeometry->GetTimeSteps() != m_PointSetSeries.size() ) { itkExceptionMacro(<<"timeGeometry->GetTimeSteps() != m_PointSetSeries.size() -- use Initialize(timeSteps) with correct number of timeSteps!"); } // // Iterate over the PointSets and update the Geometry // information of each of the items. // if (m_CalculateBoundingBox) { for ( unsigned int i = 0 ; i < m_PointSetSeries.size() ; ++i ) { const DataType::BoundingBoxType *bb = m_PointSetSeries[i]->GetBoundingBox(); BoundingBox::BoundsArrayType itkBounds = bb->GetBounds(); // Ensure minimal bounds of 1.0 in each dimension for ( unsigned int j = 0; j < 3; ++j ) { if ( itkBounds[j*2+1] - itkBounds[j*2] < 1.0 ) { BoundingBox::CoordRepType center = (itkBounds[j*2] + itkBounds[j*2+1]) / 2.0; itkBounds[j*2] = center - 0.5; itkBounds[j*2+1] = center + 0.5; } } this->GetGeometry(i)->SetBounds(itkBounds); } m_CalculateBoundingBox = false; } this->GetTimeSlicedGeometry()->UpdateInformation(); } void mitk::PointSet::SetRequestedRegionToLargestPossibleRegion() { } bool mitk::PointSet::RequestedRegionIsOutsideOfTheBufferedRegion() { return false; } bool mitk::PointSet::VerifyRequestedRegion() { return true; } void mitk::PointSet::SetRequestedRegion( itk::DataObject * ) { } void mitk::PointSet::PrintSelf( std::ostream& os, itk::Indent indent ) const { Superclass::PrintSelf(os, indent); os << indent << "Number timesteps: " << m_PointSetSeries.size() << "\n"; unsigned int i = 0; for (PointSetSeries::const_iterator it = m_PointSetSeries.begin(); it != m_PointSetSeries.end(); ++it) { os << indent << "Timestep " << i++ << ": \n"; MeshType::Pointer ps = *it; itk::Indent nextIndent = indent.GetNextIndent(); ps->Print(os, nextIndent); MeshType::PointsContainer* points = ps->GetPoints(); for (MeshType::PointsContainer::iterator it2 = points->begin(); it2 != points->end(); ++it2) { os << nextIndent << "Point " << it2->first << ": ["; os << it2->second.GetElement(0); for (unsigned int i = 1; i < PointType::GetPointDimension(); ++i) { os << ", " << it2->second.GetElement(i); } os << "]\n"; } } }