diff --git a/CMake/mitkSetupVariables.cmake b/CMake/mitkSetupVariables.cmake
index d337fb6fec..bde4916fa4 100644
--- a/CMake/mitkSetupVariables.cmake
+++ b/CMake/mitkSetupVariables.cmake
@@ -1,166 +1,165 @@
if(MITK_BUILD_ALL_PLUGINS)
set(MITK_BUILD_ALL_PLUGINS_OPTION "FORCE_BUILD_ALL")
endif()
set(LIBPOSTFIX "")
# MITK_VERSION
set(MITK_VERSION_MAJOR "2013")
set(MITK_VERSION_MINOR "06")
set(MITK_VERSION_PATCH "99")
set(MITK_VERSION_STRING "${MITK_VERSION_MAJOR}.${MITK_VERSION_MINOR}.${MITK_VERSION_PATCH}")
if(MITK_VERSION_PATCH STREQUAL "99")
set(MITK_VERSION_STRING "${MITK_VERSION_STRING}-${MITK_REVISION_SHORTID}")
endif()
# Needed early on for redirecting the BlueBerry documentation output dir
set(MITK_DOXYGEN_OUTPUT_DIR ${PROJECT_BINARY_DIR}/Documentation/Doxygen CACHE PATH
"Output directory for doxygen generated documentation." )
#-----------------------------------
# Configuration of module system
#-----------------------------------
set(MODULES_CONF_DIRNAME modulesConf)
set(MODULES_CONF_DIRS ${MITK_BINARY_DIR}/${MODULES_CONF_DIRNAME})
if(NOT UNIX AND NOT MINGW)
set(MITK_WIN32_FORCE_STATIC "STATIC" CACHE INTERNAL "Use this variable to always build static libraries on non-unix platforms")
endif()
# build the MITK_INCLUDE_DIRS variable
set(MITK_INCLUDE_DIRS
${ITK_INCLUDE_DIRS}
${VTK_INCLUDE_DIRS}
${PROJECT_BINARY_DIR} # contains mitkConfig.h and similar files
${MODULES_CONF_DIRS} # contains module *Exports.h files
)
set(CORE_DIRECTORIES Common DataManagement Algorithms IO Rendering Interactions Controllers Service)
foreach(d ${CORE_DIRECTORIES})
list(APPEND MITK_INCLUDE_DIRS ${CMAKE_CURRENT_SOURCE_DIR}/Core/Code/${d})
endforeach()
#list(APPEND MITK_INCLUDE_DIRS
#${ITK_INCLUDE_DIRS}
#${VTK_INCLUDE_DIRS}
# )
-foreach(d Utilities Utilities/ipPic Utilities/pic2vtk Utilities/tinyxml Utilities/mbilog)
+foreach(d Utilities Utilities/ipPic Utilities/tinyxml Utilities/mbilog)
list(APPEND MITK_INCLUDE_DIRS ${CMAKE_CURRENT_SOURCE_DIR}/${d})
endforeach()
list(APPEND MITK_INCLUDE_DIRS ${CMAKE_CURRENT_BINARY_DIR}/Utilities/mbilog)
if(WIN32)
list(APPEND MITK_INCLUDE_DIRS ${CMAKE_CURRENT_SOURCE_DIR}/Utilities/ipPic/win32)
endif()
# additional include dirs variables
set(IPSEGMENTATION_INCLUDE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/Utilities/ipSegmentation)
# variables containing librariy names
set(MITK_CORE_LIBRARIES Mitk)
set(VTK_FOR_MITK_LIBRARIES
vtkGraphics
vtkCommon
vtkFiltering
vtkGraphics
vtkHybrid
vtkImaging
vtkIO
vtkParallel
vtkRendering
vtkVolumeRendering
vtkWidgets
${VTK_JPEG_LIBRARIES}
${VTK_PNG_LIBRARIES}
${VTK_ZLIB_LIBRARIES}
${VTK_EXPAT_LIBRARIES}
${VTK_FREETYPE_LIBRARIES}
)
# TODO: maybe solve this with lib depends mechanism of CMake
set(UTIL_FOR_MITK_LIBRARIES mbilog)
set(LIBRARIES_FOR_MITK_CORE
${UTIL_FOR_MITK_LIBRARIES}
${VTK_FOR_MITK_LIBRARIES}
${ITK_LIBRARIES}
)
set(MITK_LIBRARIES
${MITK_CORE_LIBRARIES}
${LIBRARIES_FOR_MITK_CORE}
- pic2vtk
)
# variables used in CMake macros which are called from external projects
set(MITK_VTK_LIBRARY_DIRS ${VTK_LIBRARY_DIRS})
set(MITK_ITK_LIBRARY_DIRS ${ITK_LIBRARY_DIRS})
# variables containing link directories
set(MITK_LIBRARY_DIRS ${CMAKE_LIBRARY_OUTPUT_DIRECTORY})
set(MITK_LINK_DIRECTORIES
${CMAKE_LIBRARY_OUTPUT_DIRECTORY}
${ITK_LIBRARY_DIRS}
${VTK_LIBRARY_DIRS}
${GDCM_LIBRARY_DIRS})
# Qt support
if(MITK_USE_QT)
find_package(Qt4 REQUIRED)
set(QMITK_INCLUDE_DIRS
${MITK_INCLUDE_DIRS}
${CMAKE_CURRENT_SOURCE_DIR}/Modules/Qmitk
${PROJECT_BINARY_DIR}/Modules/Qmitk
)
set(QMITK_LIBRARIES Qmitk ${MITK_LIBRARIES})
set(QMITK_LINK_DIRECTORIES ${MITK_LINK_DIRECTORIES})
endif()
if(MITK_BUILD_ALL_PLUGINS)
set(MITK_BUILD_ALL_PLUGINS_OPTION "FORCE_BUILD_ALL")
endif()
# create a list of types for template instantiations of itk image access functions
function(_create_type_seq TYPES seq_var seqdim_var)
set(_seq )
set(_seq_dim )
string(REPLACE "," ";" _pixeltypes "${TYPES}")
foreach(_pixeltype ${_pixeltypes})
set(_seq "${_seq}(${_pixeltype})")
set(_seq_dim "${_seq_dim}((${_pixeltype},dim))")
endforeach()
set(${seq_var} "${_seq}" PARENT_SCOPE)
set(${seqdim_var} "${_seq_dim}" PARENT_SCOPE)
endfunction()
set(MITK_ACCESSBYITK_PIXEL_TYPES )
set(MITK_ACCESSBYITK_PIXEL_TYPES_SEQ )
set(MITK_ACCESSBYITK_TYPES_DIMN_SEQ )
# concatenate only the simple pixel types to the MITK_ACCESSBYITK_PIXEL_TYPE_SEQ list
# see Bug 12682 for detailed information
foreach(_type INTEGRAL FLOATING)
set(_typelist "${MITK_ACCESSBYITK_${_type}_PIXEL_TYPES}")
if(_typelist)
if(MITK_ACCESSBYITK_PIXEL_TYPES)
set(MITK_ACCESSBYITK_PIXEL_TYPES "${MITK_ACCESSBYITK_PIXEL_TYPES},${_typelist}")
else()
set(MITK_ACCESSBYITK_PIXEL_TYPES "${_typelist}")
endif()
endif()
_create_type_seq("${_typelist}"
MITK_ACCESSBYITK_${_type}_PIXEL_TYPES_SEQ
MITK_ACCESSBYITK_${_type}_TYPES_DIMN_SEQ)
set(MITK_ACCESSBYITK_PIXEL_TYPES_SEQ "${MITK_ACCESSBYITK_PIXEL_TYPES_SEQ}${MITK_ACCESSBYITK_${_type}_PIXEL_TYPES_SEQ}")
set(MITK_ACCESSBYITK_TYPES_DIMN_SEQ "${MITK_ACCESSBYITK_TYPES_DIMN_SEQ}${MITK_ACCESSBYITK_${_type}_TYPES_DIMN_SEQ}")
endforeach()
# separate processing of the COMPOSITE list to avoid its concatenation to to global list
_create_type_seq(${MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES}
MITK_ACCESSBYITK_COMPOSITE_PIXEL_TYPES_SEQ
MITK_ACCESSBYITK_COMPOSITE_TYPES_DIMN_SEQ)
set(MITK_ACCESSBYITK_DIMENSIONS_SEQ )
string(REPLACE "," ";" _dimensions "${MITK_ACCESSBYITK_DIMENSIONS}")
foreach(_dimension ${_dimensions})
set(MITK_ACCESSBYITK_DIMENSIONS_SEQ "${MITK_ACCESSBYITK_DIMENSIONS_SEQ}(${_dimension})")
endforeach()
diff --git a/Core/Code/CMakeLists.txt b/Core/Code/CMakeLists.txt
index 70aa911579..9291534934 100644
--- a/Core/Code/CMakeLists.txt
+++ b/Core/Code/CMakeLists.txt
@@ -1,52 +1,51 @@
#FIND_PACKAGE(OpenGL)
#IF(NOT OPENGL_FOUND)
# MESSAGE("GL is required for MITK rendering")
#ENDIF(NOT OPENGL_FOUND )
set(TOOL_CPPS "")
# temporary suppress warnings in the following files until image accessors are fully integrated.
set_source_files_properties( DataManagement/mitkImage.cpp COMPILE_FLAGS -DMITK_NO_DEPRECATED_WARNINGS )
set_source_files_properties( Controllers/mitkSliceNavigationController.cpp COMPILE_FLAGS -DMITK_NO_DEPRECATED_WARNINGS )
# In MITK_ITK_Config.cmake, we set ITK_NO_IO_FACTORY_REGISTER_MANAGER to 1 unless
# the variable is already defined. Setting it to 1 prevents multiple registrations/
# unregistrations of ITK IO factories during library loading/unloading (of MITK
# libraries). However, we need "one" place where the IO factories are registered at
# least once. This could be the application executable, but every executable would
# need to take care of that itself. Instead, we allow the auto registration in the
# Mitk Core library.
set(ITK_NO_IO_FACTORY_REGISTER_MANAGER 0)
MITK_CREATE_MODULE( Mitk
INCLUDE_DIRS
${CppMicroServices_INCLUDE_DIRS} Algorithms Common DataManagement Controllers
Interactions Interfaces IO Rendering ${MITK_BINARY_DIR}
INTERNAL_INCLUDE_DIRS
${OPENGL_INCLUDE_DIR}
${CppMicroServices_INTERNAL_INCLUDE_DIRS}
DEPENDS mbilog tinyxml CppMicroServices
- DEPENDS_INTERNAL pic2vtk
PACKAGE_DEPENDS ITK GDCM VTK OpenGL
EXPORT_DEFINE MITK_CORE_EXPORT
WARNINGS_AS_ERRORS
)
# this is needed for libraries which link to Mitk and need
# symbols from explicitly instantiated templates
if(MINGW)
get_target_property(_mitkCore_MINGW_linkflags Mitk LINK_FLAGS)
if(NOT _mitkCore_MINGW_linkflags)
set(_mitkCore_MINGW_linkflags "")
endif(NOT _mitkCore_MINGW_linkflags)
set_target_properties(Mitk PROPERTIES LINK_FLAGS "${_mitkCore_MINGW_linkflags} -Wl,--export-all-symbols")
endif(MINGW)
if(MSVC_IDE OR MSVC_VERSION OR MINGW)
target_link_libraries(Mitk psapi.lib)
endif(MSVC_IDE OR MSVC_VERSION OR MINGW)
# build tests?
if(BUILD_TESTING)
add_subdirectory(Testing)
ENDIF()
diff --git a/Documentation/doxygen.conf.in b/Documentation/doxygen.conf.in
index 682a77f6d0..aafe0c22d4 100644
--- a/Documentation/doxygen.conf.in
+++ b/Documentation/doxygen.conf.in
@@ -1,1928 +1,1920 @@
# Doxyfile 1.8.0
# This file describes the settings to be used by the documentation system
# doxygen (www.doxygen.org) for a project.
#
# All text after a hash (#) is considered a comment and will be ignored.
# The format is:
# TAG = value [value, ...]
# For lists items can also be appended using:
# TAG += value [value, ...]
# Values that contain spaces should be placed between quotes (" ").
#---------------------------------------------------------------------------
# Project related configuration options
#---------------------------------------------------------------------------
# This tag specifies the encoding used for all characters in the config file
# that follow. The default is UTF-8 which is also the encoding used for all
# text before the first occurrence of this tag. Doxygen uses libiconv (or the
# iconv built into libc) for the transcoding. See
# http://www.gnu.org/software/libiconv for the list of possible encodings.
DOXYFILE_ENCODING = UTF-8
# The PROJECT_NAME tag is a single word (or sequence of words) that should
# identify the project. Note that if you do not use Doxywizard you need
# to put quotes around the project name if it contains spaces.
PROJECT_NAME = MITK
# The PROJECT_NUMBER tag can be used to enter a project or revision number.
# This could be handy for archiving the generated documentation or
# if some version control system is used.
PROJECT_NUMBER = @MITK_VERSION_STRING@
# Using the PROJECT_BRIEF tag one can provide an optional one line description
# for a project that appears at the top of each page and should give viewer
# a quick idea about the purpose of the project. Keep the description short.
PROJECT_BRIEF = "Medical Imaging Interaction Toolkit"
# With the PROJECT_LOGO tag one can specify an logo or icon that is
# included in the documentation. The maximum height of the logo should not
# exceed 55 pixels and the maximum width should not exceed 200 pixels.
# Doxygen will copy the logo to the output directory.
PROJECT_LOGO =
# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute)
# base path where the generated documentation will be put.
# If a relative path is entered, it will be relative to the location
# where doxygen was started. If left blank the current directory will be used.
OUTPUT_DIRECTORY = @MITK_DOXYGEN_OUTPUT_DIR@
# If the CREATE_SUBDIRS tag is set to YES, then doxygen will create
# 4096 sub-directories (in 2 levels) under the output directory of each output
# format and will distribute the generated files over these directories.
# Enabling this option can be useful when feeding doxygen a huge amount of
# source files, where putting all generated files in the same directory would
# otherwise cause performance problems for the file system.
CREATE_SUBDIRS = NO
# The OUTPUT_LANGUAGE tag is used to specify the language in which all
# documentation generated by doxygen is written. Doxygen will use this
# information to generate all constant output in the proper language.
# The default language is English, other supported languages are:
# Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional,
# Croatian, Czech, Danish, Dutch, Esperanto, Farsi, Finnish, French, German,
# Greek, Hungarian, Italian, Japanese, Japanese-en (Japanese with English
# messages), Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian,
# Polish, Portuguese, Romanian, Russian, Serbian, Serbian-Cyrillic, Slovak,
# Slovene, Spanish, Swedish, Ukrainian, and Vietnamese.
OUTPUT_LANGUAGE = English
# If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will
# include brief member descriptions after the members that are listed in
# the file and class documentation (similar to JavaDoc).
# Set to NO to disable this.
BRIEF_MEMBER_DESC = YES
# If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend
# the brief description of a member or function before the detailed description.
# Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
# brief descriptions will be completely suppressed.
REPEAT_BRIEF = YES
# This tag implements a quasi-intelligent brief description abbreviator
# that is used to form the text in various listings. Each string
# in this list, if found as the leading text of the brief description, will be
# stripped from the text and the result after processing the whole list, is
# used as the annotated text. Otherwise, the brief description is used as-is.
# If left blank, the following values are used ("$name" is automatically
# replaced with the name of the entity): "The $name class" "The $name widget"
# "The $name file" "is" "provides" "specifies" "contains"
# "represents" "a" "an" "the"
ABBREVIATE_BRIEF =
# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then
# Doxygen will generate a detailed section even if there is only a brief
# description.
ALWAYS_DETAILED_SEC = NO
# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all
# inherited members of a class in the documentation of that class as if those
# members were ordinary class members. Constructors, destructors and assignment
# operators of the base classes will not be shown.
INLINE_INHERITED_MEMB = NO
# If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full
# path before files name in the file list and in the header files. If set
# to NO the shortest path that makes the file name unique will be used.
FULL_PATH_NAMES = NO
# If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag
# can be used to strip a user-defined part of the path. Stripping is
# only done if one of the specified strings matches the left-hand part of
# the path. The tag can be used to show relative paths in the file list.
# If left blank the directory from which doxygen is run is used as the
# path to strip.
STRIP_FROM_PATH =
# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of
# the path mentioned in the documentation of a class, which tells
# the reader which header file to include in order to use a class.
# If left blank only the name of the header file containing the class
# definition is used. Otherwise one should specify the include paths that
# are normally passed to the compiler using the -I flag.
STRIP_FROM_INC_PATH =
# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter
# (but less readable) file names. This can be useful if your file system
# doesn't support long names like on DOS, Mac, or CD-ROM.
SHORT_NAMES = NO
# If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen
# will interpret the first line (until the first dot) of a JavaDoc-style
# comment as the brief description. If set to NO, the JavaDoc
# comments will behave just like regular Qt-style comments
# (thus requiring an explicit @brief command for a brief description.)
JAVADOC_AUTOBRIEF = NO
# If the QT_AUTOBRIEF tag is set to YES then Doxygen will
# interpret the first line (until the first dot) of a Qt-style
# comment as the brief description. If set to NO, the comments
# will behave just like regular Qt-style comments (thus requiring
# an explicit \brief command for a brief description.)
QT_AUTOBRIEF = NO
# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen
# treat a multi-line C++ special comment block (i.e. a block of //! or ///
# comments) as a brief description. This used to be the default behaviour.
# The new default is to treat a multi-line C++ comment block as a detailed
# description. Set this tag to YES if you prefer the old behaviour instead.
MULTILINE_CPP_IS_BRIEF = NO
# If the INHERIT_DOCS tag is set to YES (the default) then an undocumented
# member inherits the documentation from any documented member that it
# re-implements.
INHERIT_DOCS = YES
# If the SEPARATE_MEMBER_PAGES tag is set to YES, then doxygen will produce
# a new page for each member. If set to NO, the documentation of a member will
# be part of the file/class/namespace that contains it.
SEPARATE_MEMBER_PAGES = NO
# The TAB_SIZE tag can be used to set the number of spaces in a tab.
# Doxygen uses this value to replace tabs by spaces in code fragments.
TAB_SIZE = 8
# This tag can be used to specify a number of aliases that acts
# as commands in the documentation. An alias has the form "name=value".
# For example adding "sideeffect=\par Side Effects:\n" will allow you to
# put the command \sideeffect (or @sideeffect) in the documentation, which
# will result in a user-defined paragraph with heading "Side Effects:".
# You can put \n's in the value part of an alias to insert newlines.
ALIASES = "FIXME=\par Fix Me's:\n" \
"BlueBerry=\if BLUEBERRY" \
"endBlueBerry=\endif" \
"bundlemainpage{1}=\page \1" \
"embmainpage{1}=\page \1" \
"github{2}=\2" \
"deprecatedSince{1}=\xrefitem deprecatedSince\1 \" Deprecated as of \1\" \"Functions deprecated as of \1\" "
# This tag can be used to specify a number of word-keyword mappings (TCL only).
# A mapping has the form "name=value". For example adding
# "class=itcl::class" will allow you to use the command class in the
# itcl::class meaning.
TCL_SUBST =
# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C
# sources only. Doxygen will then generate output that is more tailored for C.
# For instance, some of the names that are used will be different. The list
# of all members will be omitted, etc.
OPTIMIZE_OUTPUT_FOR_C = NO
# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java
# sources only. Doxygen will then generate output that is more tailored for
# Java. For instance, namespaces will be presented as packages, qualified
# scopes will look different, etc.
OPTIMIZE_OUTPUT_JAVA = NO
# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran
# sources only. Doxygen will then generate output that is more tailored for
# Fortran.
OPTIMIZE_FOR_FORTRAN = NO
# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL
# sources. Doxygen will then generate output that is tailored for
# VHDL.
OPTIMIZE_OUTPUT_VHDL = NO
# Doxygen selects the parser to use depending on the extension of the files it
# parses. With this tag you can assign which parser to use for a given extension.
# Doxygen has a built-in mapping, but you can override or extend it using this
# tag. The format is ext=language, where ext is a file extension, and language
# is one of the parsers supported by doxygen: IDL, Java, Javascript, CSharp, C,
# C++, D, PHP, Objective-C, Python, Fortran, VHDL, C, C++. For instance to make
# doxygen treat .inc files as Fortran files (default is PHP), and .f files as C
# (default is Fortran), use: inc=Fortran f=C. Note that for custom extensions
# you also need to set FILE_PATTERNS otherwise the files are not read by doxygen.
EXTENSION_MAPPING =
# If MARKDOWN_SUPPORT is enabled (the default) then doxygen pre-processes all
# comments according to the Markdown format, which allows for more readable
# documentation. See http://daringfireball.net/projects/markdown/ for details.
# The output of markdown processing is further processed by doxygen, so you
# can mix doxygen, HTML, and XML commands with Markdown formatting.
# Disable only in case of backward compatibilities issues.
MARKDOWN_SUPPORT = YES
# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want
# to include (a tag file for) the STL sources as input, then you should
# set this tag to YES in order to let doxygen match functions declarations and
# definitions whose arguments contain STL classes (e.g. func(std::string); v.s.
# func(std::string) {}). This also makes the inheritance and collaboration
# diagrams that involve STL classes more complete and accurate.
BUILTIN_STL_SUPPORT = YES
# If you use Microsoft's C++/CLI language, you should set this option to YES to
# enable parsing support.
CPP_CLI_SUPPORT = NO
# Set the SIP_SUPPORT tag to YES if your project consists of sip sources only.
# Doxygen will parse them like normal C++ but will assume all classes use public
# instead of private inheritance when no explicit protection keyword is present.
SIP_SUPPORT = NO
# For Microsoft's IDL there are propget and propput attributes to indicate getter
# and setter methods for a property. Setting this option to YES (the default)
# will make doxygen replace the get and set methods by a property in the
# documentation. This will only work if the methods are indeed getting or
# setting a simple type. If this is not the case, or you want to show the
# methods anyway, you should set this option to NO.
IDL_PROPERTY_SUPPORT = YES
# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC
# tag is set to YES, then doxygen will reuse the documentation of the first
# member in the group (if any) for the other members of the group. By default
# all members of a group must be documented explicitly.
DISTRIBUTE_GROUP_DOC = YES
# Set the SUBGROUPING tag to YES (the default) to allow class member groups of
# the same type (for instance a group of public functions) to be put as a
# subgroup of that type (e.g. under the Public Functions section). Set it to
# NO to prevent subgrouping. Alternatively, this can be done per class using
# the \nosubgrouping command.
SUBGROUPING = YES
# When the INLINE_GROUPED_CLASSES tag is set to YES, classes, structs and
# unions are shown inside the group in which they are included (e.g. using
# @ingroup) instead of on a separate page (for HTML and Man pages) or
# section (for LaTeX and RTF).
INLINE_GROUPED_CLASSES = NO
# When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and
# unions with only public data fields will be shown inline in the documentation
# of the scope in which they are defined (i.e. file, namespace, or group
# documentation), provided this scope is documented. If set to NO (the default),
# structs, classes, and unions are shown on a separate page (for HTML and Man
# pages) or section (for LaTeX and RTF).
INLINE_SIMPLE_STRUCTS = NO
# When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum
# is documented as struct, union, or enum with the name of the typedef. So
# typedef struct TypeS {} TypeT, will appear in the documentation as a struct
# with name TypeT. When disabled the typedef will appear as a member of a file,
# namespace, or class. And the struct will be named TypeS. This can typically
# be useful for C code in case the coding convention dictates that all compound
# types are typedef'ed and only the typedef is referenced, never the tag name.
TYPEDEF_HIDES_STRUCT = NO
# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to
# determine which symbols to keep in memory and which to flush to disk.
# When the cache is full, less often used symbols will be written to disk.
# For small to medium size projects (<1000 input files) the default value is
# probably good enough. For larger projects a too small cache size can cause
# doxygen to be busy swapping symbols to and from disk most of the time
# causing a significant performance penalty.
# If the system has enough physical memory increasing the cache will improve the
# performance by keeping more symbols in memory. Note that the value works on
# a logarithmic scale so increasing the size by one will roughly double the
# memory usage. The cache size is given by this formula:
# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0,
# corresponding to a cache size of 2^16 = 65536 symbols.
SYMBOL_CACHE_SIZE = 0
# Similar to the SYMBOL_CACHE_SIZE the size of the symbol lookup cache can be
# set using LOOKUP_CACHE_SIZE. This cache is used to resolve symbols given
# their name and scope. Since this can be an expensive process and often the
# same symbol appear multiple times in the code, doxygen keeps a cache of
# pre-resolved symbols. If the cache is too small doxygen will become slower.
# If the cache is too large, memory is wasted. The cache size is given by this
# formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range is 0..9, the default is 0,
# corresponding to a cache size of 2^16 = 65536 symbols.
LOOKUP_CACHE_SIZE = 0
#---------------------------------------------------------------------------
# Build related configuration options
#---------------------------------------------------------------------------
# If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in
# documentation are documented, even if no documentation was available.
# Private class members and static file members will be hidden unless
# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
EXTRACT_ALL = YES
# If the EXTRACT_PRIVATE tag is set to YES all private members of a class
# will be included in the documentation.
EXTRACT_PRIVATE = NO
# If the EXTRACT_PACKAGE tag is set to YES all members with package or internal scope will be included in the documentation.
EXTRACT_PACKAGE = NO
# If the EXTRACT_STATIC tag is set to YES all static members of a file
# will be included in the documentation.
EXTRACT_STATIC = YES
# If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs)
# defined locally in source files will be included in the documentation.
# If set to NO only classes defined in header files are included.
EXTRACT_LOCAL_CLASSES = @MITK_DOXYGEN_INTERNAL_DOCS@
# This flag is only useful for Objective-C code. When set to YES local
# methods, which are defined in the implementation section but not in
# the interface are included in the documentation.
# If set to NO (the default) only methods in the interface are included.
EXTRACT_LOCAL_METHODS = NO
# If this flag is set to YES, the members of anonymous namespaces will be
# extracted and appear in the documentation as a namespace called
# 'anonymous_namespace{file}', where file will be replaced with the base
# name of the file that contains the anonymous namespace. By default
# anonymous namespaces are hidden.
EXTRACT_ANON_NSPACES = NO
# If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all
# undocumented members of documented classes, files or namespaces.
# If set to NO (the default) these members will be included in the
# various overviews, but no documentation section is generated.
# This option has no effect if EXTRACT_ALL is enabled.
HIDE_UNDOC_MEMBERS = NO
# If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all
# undocumented classes that are normally visible in the class hierarchy.
# If set to NO (the default) these classes will be included in the various
# overviews. This option has no effect if EXTRACT_ALL is enabled.
HIDE_UNDOC_CLASSES = NO
# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all
# friend (class|struct|union) declarations.
# If set to NO (the default) these declarations will be included in the
# documentation.
HIDE_FRIEND_COMPOUNDS = @MITK_DOXYGEN_HIDE_FRIEND_COMPOUNDS@
# If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any
# documentation blocks found inside the body of a function.
# If set to NO (the default) these blocks will be appended to the
# function's detailed documentation block.
HIDE_IN_BODY_DOCS = NO
# The INTERNAL_DOCS tag determines if documentation
# that is typed after a \internal command is included. If the tag is set
# to NO (the default) then the documentation will be excluded.
# Set it to YES to include the internal documentation.
INTERNAL_DOCS = @MITK_DOXYGEN_INTERNAL_DOCS@
# If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate
# file names in lower-case letters. If set to YES upper-case letters are also
# allowed. This is useful if you have classes or files whose names only differ
# in case and if your file system supports case sensitive file names. Windows
# and Mac users are advised to set this option to NO.
CASE_SENSE_NAMES = YES
# If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen
# will show members with their full class and namespace scopes in the
# documentation. If set to YES the scope will be hidden.
HIDE_SCOPE_NAMES = NO
# If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen
# will put a list of the files that are included by a file in the documentation
# of that file.
SHOW_INCLUDE_FILES = YES
# If the FORCE_LOCAL_INCLUDES tag is set to YES then Doxygen
# will list include files with double quotes in the documentation
# rather than with sharp brackets.
FORCE_LOCAL_INCLUDES = NO
# If the INLINE_INFO tag is set to YES (the default) then a tag [inline]
# is inserted in the documentation for inline members.
INLINE_INFO = YES
# If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen
# will sort the (detailed) documentation of file and class members
# alphabetically by member name. If set to NO the members will appear in
# declaration order.
SORT_MEMBER_DOCS = YES
# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the
# brief documentation of file, namespace and class members alphabetically
# by member name. If set to NO (the default) the members will appear in
# declaration order.
SORT_BRIEF_DOCS = NO
# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen
# will sort the (brief and detailed) documentation of class members so that
# constructors and destructors are listed first. If set to NO (the default)
# the constructors will appear in the respective orders defined by
# SORT_MEMBER_DOCS and SORT_BRIEF_DOCS.
# This tag will be ignored for brief docs if SORT_BRIEF_DOCS is set to NO
# and ignored for detailed docs if SORT_MEMBER_DOCS is set to NO.
SORT_MEMBERS_CTORS_1ST = NO
# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the
# hierarchy of group names into alphabetical order. If set to NO (the default)
# the group names will appear in their defined order.
SORT_GROUP_NAMES = NO
# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be
# sorted by fully-qualified names, including namespaces. If set to
# NO (the default), the class list will be sorted only by class name,
# not including the namespace part.
# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES.
# Note: This option applies only to the class list, not to the
# alphabetical list.
SORT_BY_SCOPE_NAME = YES
# If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to
# do proper type resolution of all parameters of a function it will reject a
# match between the prototype and the implementation of a member function even
# if there is only one candidate or it is obvious which candidate to choose
# by doing a simple string match. By disabling STRICT_PROTO_MATCHING doxygen
# will still accept a match between prototype and implementation in such cases.
STRICT_PROTO_MATCHING = NO
# The GENERATE_TODOLIST tag can be used to enable (YES) or
# disable (NO) the todo list. This list is created by putting \todo
# commands in the documentation.
GENERATE_TODOLIST = @MITK_DOXYGEN_GENERATE_TODOLIST@
# The GENERATE_TESTLIST tag can be used to enable (YES) or
# disable (NO) the test list. This list is created by putting \test
# commands in the documentation.
GENERATE_TESTLIST = YES
# The GENERATE_BUGLIST tag can be used to enable (YES) or
# disable (NO) the bug list. This list is created by putting \bug
# commands in the documentation.
GENERATE_BUGLIST = @MITK_DOXYGEN_GENERATE_BUGLIST@
# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or
# disable (NO) the deprecated list. This list is created by putting
# \deprecated commands in the documentation.
GENERATE_DEPRECATEDLIST= @MITK_DOXYGEN_GENERATE_DEPRECATEDLIST@
# The ENABLED_SECTIONS tag can be used to enable conditional
# documentation sections, marked by \if sectionname ... \endif.
ENABLED_SECTIONS = @MITK_DOXYGEN_ENABLED_SECTIONS@
# The MAX_INITIALIZER_LINES tag determines the maximum number of lines
# the initial value of a variable or macro consists of for it to appear in
# the documentation. If the initializer consists of more lines than specified
# here it will be hidden. Use a value of 0 to hide initializers completely.
# The appearance of the initializer of individual variables and macros in the
# documentation can be controlled using \showinitializer or \hideinitializer
# command in the documentation regardless of this setting.
MAX_INITIALIZER_LINES = 0
# Set the SHOW_USED_FILES tag to NO to disable the list of files generated
# at the bottom of the documentation of classes and structs. If set to YES the
# list will mention the files that were used to generate the documentation.
SHOW_USED_FILES = YES
# If the sources in your project are distributed over multiple directories
# then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy
# in the documentation. The default is NO.
SHOW_DIRECTORIES = NO
# Set the SHOW_FILES tag to NO to disable the generation of the Files page.
# This will remove the Files entry from the Quick Index and from the
# Folder Tree View (if specified). The default is YES.
SHOW_FILES = YES
# Set the SHOW_NAMESPACES tag to NO to disable the generation of the
# Namespaces page.
# This will remove the Namespaces entry from the Quick Index
# and from the Folder Tree View (if specified). The default is YES.
SHOW_NAMESPACES = YES
# The FILE_VERSION_FILTER tag can be used to specify a program or script that
# doxygen should invoke to get the current version for each file (typically from
# the version control system). Doxygen will invoke the program by executing (via
# popen()) the command , where is the value of
# the FILE_VERSION_FILTER tag, and is the name of an input file
# provided by doxygen. Whatever the program writes to standard output
# is used as the file version. See the manual for examples.
FILE_VERSION_FILTER =
# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed
# by doxygen. The layout file controls the global structure of the generated
# output files in an output format independent way. The create the layout file
# that represents doxygen's defaults, run doxygen with the -l option.
# You can optionally specify a file name after the option, if omitted
# DoxygenLayout.xml will be used as the name of the layout file.
LAYOUT_FILE = @MITK_SOURCE_DIR@/Documentation/MITKDoxygenLayout.xml
# The CITE_BIB_FILES tag can be used to specify one or more bib files
# containing the references data. This must be a list of .bib files. The
# .bib extension is automatically appended if omitted. Using this command
# requires the bibtex tool to be installed. See also
# http://en.wikipedia.org/wiki/BibTeX for more info. For LaTeX the style
# of the bibliography can be controlled using LATEX_BIB_STYLE. To use this
# feature you need bibtex and perl available in the search path.
CITE_BIB_FILES =
#---------------------------------------------------------------------------
# configuration options related to warning and progress messages
#---------------------------------------------------------------------------
# The QUIET tag can be used to turn on/off the messages that are generated
# by doxygen. Possible values are YES and NO. If left blank NO is used.
QUIET = NO
# The WARNINGS tag can be used to turn on/off the warning messages that are
# generated by doxygen. Possible values are YES and NO. If left blank
# NO is used.
WARNINGS = YES
# If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings
# for undocumented members. If EXTRACT_ALL is set to YES then this flag will
# automatically be disabled.
WARN_IF_UNDOCUMENTED = YES
# If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for
# potential errors in the documentation, such as not documenting some
# parameters in a documented function, or documenting parameters that
# don't exist or using markup commands wrongly.
WARN_IF_DOC_ERROR = YES
# The WARN_NO_PARAMDOC option can be enabled to get warnings for
# functions that are documented, but have no documentation for their parameters
# or return value. If set to NO (the default) doxygen will only warn about
# wrong or incomplete parameter documentation, but not about the absence of
# documentation.
WARN_NO_PARAMDOC = NO
# The WARN_FORMAT tag determines the format of the warning messages that
# doxygen can produce. The string should contain the $file, $line, and $text
# tags, which will be replaced by the file and line number from which the
# warning originated and the warning text. Optionally the format may contain
# $version, which will be replaced by the version of the file (if it could
# be obtained via FILE_VERSION_FILTER)
WARN_FORMAT = "$file:$line: $text"
# The WARN_LOGFILE tag can be used to specify a file to which warning
# and error messages should be written. If left blank the output is written
# to stderr.
WARN_LOGFILE =
#---------------------------------------------------------------------------
# configuration options related to the input files
#---------------------------------------------------------------------------
# The INPUT tag can be used to specify the files and/or directories that contain
# documented source files. You may enter file names like "myfile.cpp" or
# directories like "/usr/src/myproject". Separate the files or directories
# with spaces.
INPUT = @MITK_SOURCE_DIR@ \
@MITK_BINARY_DIR@ \
@MITK_DOXYGEN_ADDITIONAL_INPUT_DIRS@
# This tag can be used to specify the character encoding of the source files
# that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is
# also the default input encoding. Doxygen uses libiconv (or the iconv built
# into libc) for the transcoding. See http://www.gnu.org/software/libiconv for
# the list of possible encodings.
INPUT_ENCODING = UTF-8
# If the value of the INPUT tag contains directories, you can use the
# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
# and *.h) to filter out the source-files in the directories. If left
# blank the following patterns are tested:
# *.c *.cc *.cxx *.cpp *.c++ *.d *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh
# *.hxx *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.dox *.py
# *.f90 *.f *.for *.vhd *.vhdl
FILE_PATTERNS = *.h \
*.cpp \
*.dox \
*.md \
*.txx \
*.tpp \
*.cxx \
*.cmake
# The RECURSIVE tag can be used to turn specify whether or not subdirectories
# should be searched for input files as well. Possible values are YES and NO.
# If left blank NO is used.
RECURSIVE = YES
# The EXCLUDE tag can be used to specify files and/or directories that should be
# excluded from the INPUT source files. This way you can easily exclude a
# subdirectory from a directory tree whose root is specified with the INPUT tag.
# Note that relative paths are relative to the directory from which doxygen is
# run.
EXCLUDE = @MITK_SOURCE_DIR@/BlueBerry/Documentation/reference/api/MainPage.dox \
- @MITK_SOURCE_DIR@/Utilities/ann/ \
- @MITK_SOURCE_DIR@/Utilities/glew/ \
@MITK_SOURCE_DIR@/Utilities/ipFunc/ \
@MITK_SOURCE_DIR@/Utilities/ipSegmentation/ \
@MITK_SOURCE_DIR@/Utilities/KWStyle/ \
- @MITK_SOURCE_DIR@/Utilities/pic2vtk/ \
@MITK_SOURCE_DIR@/Utilities/Poco/ \
@MITK_SOURCE_DIR@/Utilities/qtsingleapplication/ \
@MITK_SOURCE_DIR@/Utilities/qwt/ \
@MITK_SOURCE_DIR@/Utilities/qxt/ \
@MITK_SOURCE_DIR@/Utilities/tinyxml/ \
- @MITK_SOURCE_DIR@/Utilities/vecmath/ \
@MITK_SOURCE_DIR@/Applications/PluginGenerator/ \
@MITK_SOURCE_DIR@/Core/CppMicroServices/README.md \
@MITK_SOURCE_DIR@/Core/CppMicroServices/documentation/snippets/ \
@MITK_SOURCE_DIR@/Core/CppMicroServices/documentation/doxygen/standalone/ \
@MITK_SOURCE_DIR@/Core/CppMicroServices/examples/ \
@MITK_SOURCE_DIR@/Core/CppMicroServices/test/ \
@MITK_SOURCE_DIR@/Core/CppMicroServices/src/util/jsoncpp.cpp \
@MITK_SOURCE_DIR@/Deprecated/ \
@MITK_SOURCE_DIR@/Build/ \
@MITK_SOURCE_DIR@/CMake/PackageDepends \
@MITK_SOURCE_DIR@/CMake/QBundleTemplate \
@MITK_SOURCE_DIR@/CMakeExternals \
@MITK_SOURCE_DIR@/Modules/QmitkExt/vtkQtChartHeaders/ \
@MITK_BINARY_DIR@/bin/ \
@MITK_BINARY_DIR@/PT/ \
@MITK_BINARY_DIR@/GP/ \
@MITK_BINARY_DIR@/Core/CppMicroServices/ \
@MITK_BINARY_DIR@/_CPack_Packages/ \
@MITK_DOXYGEN_ADDITIONAL_EXCLUDE_DIRS@
# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
# directories that are symbolic links (a Unix file system feature) are excluded
# from the input.
EXCLUDE_SYMLINKS = NO
# If the value of the INPUT tag contains directories, you can use the
# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
# certain files from those directories. Note that the wildcards are matched
# against the file with absolute path, so to exclude all test directories
# for example use the pattern */test/*
EXCLUDE_PATTERNS = moc_* \
ui_* \
qrc_* \
wrap_* \
Register* \
*/files.cmake \
*/.git/* \
*_p.h \
*Private.* \
*/Snippets/* \
*/snippets/* \
*/testing/* \
*/Testing/* \
@MITK_BINARY_DIR@/*.cmake \
@MITK_DOXYGEN_EXCLUDE_PATTERNS@
# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
# (namespaces, classes, functions, etc.) that should be excluded from the
# output. The symbol name can be a fully qualified name, a word, or if the
# wildcard * is used, a substring. Examples: ANamespace, AClass,
# AClass::ANamespace, ANamespace::*Test
-EXCLUDE_SYMBOLS = *Private* \
- ModuleInfo \
- ServiceObjectsBase* \
- TrackedService*
+EXCLUDE_SYMBOLS =
# The EXAMPLE_PATH tag can be used to specify one or more files or
# directories that contain example code fragments that are included (see
# the \include command).
EXAMPLE_PATH = @MITK_SOURCE_DIR@/Examples/ \
@MITK_SOURCE_DIR@/Examples/Tutorial/ \
- @MITK_SOURCE_DIR@/Examples/Plugins/ \
+ @MITK_SOURCE_DIR@/Examples/Plugins/ \
@MITK_SOURCE_DIR@/Examples/QtFreeRender/ \
@MITK_SOURCE_DIR@/Core/Code/ \
- @MITK_SOURCE_DIR@/Core/CppMicroServices/documentation/snippets/ \
- @MITK_SOURCE_DIR@/Core/CppMicroServices/examples/ \
+ @MITK_SOURCE_DIR@/Core/Code/CppMicroServices/Documentation/Snippets/ \
@MITK_DOXYGEN_OUTPUT_DIR@/html/extension-points/html/ \
@MITK_SOURCE_DIR@/Documentation/Snippets/ \
@MITK_SOURCE_DIR@/Documentation/Doxygen/ExampleCode/ \
- @MITK_SOURCE_DIR@/Modules/OpenCL/Documentation/doxygen/snippets/ \
- @MITK_SOURCE_DIR@/BlueBerry/Documentation/snippets/
+ @MITK_SOURCE_DIR@/Modules/OpenCL/Documentation/doxygen/snippets/
# If the value of the EXAMPLE_PATH tag contains directories, you can use the
# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp
# and *.h) to filter out the source-files in the directories. If left
# blank all files are included.
EXAMPLE_PATTERNS =
# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be
# searched for input files to be used with the \include or \dontinclude
# commands irrespective of the value of the RECURSIVE tag.
# Possible values are YES and NO. If left blank NO is used.
EXAMPLE_RECURSIVE = YES
# The IMAGE_PATH tag can be used to specify one or more files or
# directories that contain image that are included in the documentation (see
# the \image command).
IMAGE_PATH = @MITK_SOURCE_DIR@/Documentation/Doxygen/ \
@MITK_SOURCE_DIR@/Documentation/Doxygen/Modules/ \
@MITK_SOURCE_DIR@/Documentation/Doxygen/Tutorial/ \
@MITK_SOURCE_DIR@
# The INPUT_FILTER tag can be used to specify a program that doxygen should
# invoke to filter for each input file. Doxygen will invoke the filter program
# by executing (via popen()) the command , where
# is the value of the INPUT_FILTER tag, and is the name of an
# input file. Doxygen will then use the output that the filter program writes
# to standard output.
# If FILTER_PATTERNS is specified, this tag will be
# ignored.
INPUT_FILTER =
# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern
# basis.
# Doxygen will compare the file name with each pattern and apply the
# filter if there is a match.
# The filters are a list of the form:
# pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further
# info on how filters are used. If FILTER_PATTERNS is empty or if
# non of the patterns match the file name, INPUT_FILTER is applied.
FILTER_PATTERNS = *.cmake=@CMakeDoxygenFilter_EXECUTABLE@
# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using
# INPUT_FILTER) will be used to filter the input files when producing source
# files to browse (i.e. when SOURCE_BROWSER is set to YES).
FILTER_SOURCE_FILES = NO
# The FILTER_SOURCE_PATTERNS tag can be used to specify source filters per file
# pattern. A pattern will override the setting for FILTER_PATTERN (if any)
# and it is also possible to disable source filtering for a specific pattern
# using *.ext= (so without naming a filter). This option only has effect when
# FILTER_SOURCE_FILES is enabled.
FILTER_SOURCE_PATTERNS =
#---------------------------------------------------------------------------
# configuration options related to source browsing
#---------------------------------------------------------------------------
# If the SOURCE_BROWSER tag is set to YES then a list of source files will
# be generated. Documented entities will be cross-referenced with these sources.
# Note: To get rid of all source code in the generated output, make sure also
# VERBATIM_HEADERS is set to NO.
SOURCE_BROWSER = YES
# Setting the INLINE_SOURCES tag to YES will include the body
# of functions and classes directly in the documentation.
INLINE_SOURCES = NO
# Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct
# doxygen to hide any special comment blocks from generated source code
# fragments. Normal C and C++ comments will always remain visible.
STRIP_CODE_COMMENTS = YES
# If the REFERENCED_BY_RELATION tag is set to YES
# then for each documented function all documented
# functions referencing it will be listed.
REFERENCED_BY_RELATION = YES
# If the REFERENCES_RELATION tag is set to YES
# then for each documented function all documented entities
# called/used by that function will be listed.
REFERENCES_RELATION = YES
# If the REFERENCES_LINK_SOURCE tag is set to YES (the default)
# and SOURCE_BROWSER tag is set to YES, then the hyperlinks from
# functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will
# link to the source code.
# Otherwise they will link to the documentation.
REFERENCES_LINK_SOURCE = YES
# If the USE_HTAGS tag is set to YES then the references to source code
# will point to the HTML generated by the htags(1) tool instead of doxygen
# built-in source browser. The htags tool is part of GNU's global source
# tagging system (see http://www.gnu.org/software/global/global.html). You
# will need version 4.8.6 or higher.
USE_HTAGS = NO
# If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen
# will generate a verbatim copy of the header file for each class for
# which an include is specified. Set to NO to disable this.
VERBATIM_HEADERS = YES
#---------------------------------------------------------------------------
# configuration options related to the alphabetical class index
#---------------------------------------------------------------------------
# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index
# of all compounds will be generated. Enable this if the project
# contains a lot of classes, structs, unions or interfaces.
ALPHABETICAL_INDEX = YES
# If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then
# the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns
# in which this list will be split (can be a number in the range [1..20])
COLS_IN_ALPHA_INDEX = 3
# In case all classes in a project start with a common prefix, all
# classes will be put under the same header in the alphabetical index.
# The IGNORE_PREFIX tag can be used to specify one or more prefixes that
# should be ignored while generating the index headers.
IGNORE_PREFIX =
#---------------------------------------------------------------------------
# configuration options related to the HTML output
#---------------------------------------------------------------------------
# If the GENERATE_HTML tag is set to YES (the default) Doxygen will
# generate HTML output.
GENERATE_HTML = YES
# The HTML_OUTPUT tag is used to specify where the HTML docs will be put.
# If a relative path is entered the value of OUTPUT_DIRECTORY will be
# put in front of it. If left blank `html' will be used as the default path.
HTML_OUTPUT = html
# The HTML_FILE_EXTENSION tag can be used to specify the file extension for
# each generated HTML page (for example: .htm,.php,.asp). If it is left blank
# doxygen will generate files with .html extension.
HTML_FILE_EXTENSION = .html
# The HTML_HEADER tag can be used to specify a personal HTML header for
# each generated HTML page. If it is left blank doxygen will generate a
# standard header. Note that when using a custom header you are responsible
# for the proper inclusion of any scripts and style sheets that doxygen
# needs, which is dependent on the configuration options used.
# It is advised to generate a default header using "doxygen -w html
# header.html footer.html stylesheet.css YourConfigFile" and then modify
# that header. Note that the header is subject to change so you typically
# have to redo this when upgrading to a newer version of doxygen or when
# changing the value of configuration settings such as GENERATE_TREEVIEW!
HTML_HEADER =
# The HTML_FOOTER tag can be used to specify a personal HTML footer for
# each generated HTML page. If it is left blank doxygen will generate a
# standard footer.
HTML_FOOTER =
# The HTML_STYLESHEET tag can be used to specify a user-defined cascading
# style sheet that is used by each HTML page. It can be used to
# fine-tune the look of the HTML output. If the tag is left blank doxygen
# will generate a default style sheet. Note that doxygen will try to copy
# the style sheet file to the HTML output directory, so don't put your own
# style sheet in the HTML output directory as well, or it will be erased!
HTML_STYLESHEET = @MITK_DOXYGEN_STYLESHEET@
# The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
# other source files which should be copied to the HTML output directory. Note
# that these files will be copied to the base HTML output directory. Use the
# $relpath$ marker in the HTML_HEADER and/or HTML_FOOTER files to load these
# files. In the HTML_STYLESHEET file, use the file name only. Also note that
# the files will be copied as-is; there are no commands or markers available.
HTML_EXTRA_FILES =
# The HTML_COLORSTYLE_HUE tag controls the color of the HTML output.
# Doxygen will adjust the colors in the style sheet and background images
# according to this color. Hue is specified as an angle on a colorwheel,
# see http://en.wikipedia.org/wiki/Hue for more information.
# For instance the value 0 represents red, 60 is yellow, 120 is green,
# 180 is cyan, 240 is blue, 300 purple, and 360 is red again.
# The allowed range is 0 to 359.
HTML_COLORSTYLE_HUE = 220
# The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of
# the colors in the HTML output. For a value of 0 the output will use
# grayscales only. A value of 255 will produce the most vivid colors.
HTML_COLORSTYLE_SAT = 100
# The HTML_COLORSTYLE_GAMMA tag controls the gamma correction applied to
# the luminance component of the colors in the HTML output. Values below
# 100 gradually make the output lighter, whereas values above 100 make
# the output darker. The value divided by 100 is the actual gamma applied,
# so 80 represents a gamma of 0.8, The value 220 represents a gamma of 2.2,
# and 100 does not change the gamma.
HTML_COLORSTYLE_GAMMA = 80
# If the HTML_TIMESTAMP tag is set to YES then the footer of each generated HTML
# page will contain the date and time when the page was generated. Setting
# this to NO can help when comparing the output of multiple runs.
HTML_TIMESTAMP = YES
# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes,
# files or namespaces will be aligned in HTML using tables. If set to
# NO a bullet list will be used.
HTML_ALIGN_MEMBERS = YES
# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML
# documentation will contain sections that can be hidden and shown after the
# page has loaded. For this to work a browser that supports
# JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox
# Netscape 6.0+, Internet explorer 5.0+, Konqueror, or Safari).
HTML_DYNAMIC_SECTIONS = @MITK_DOXYGEN_HTML_DYNAMIC_SECTIONS@
# If the GENERATE_DOCSET tag is set to YES, additional index files
# will be generated that can be used as input for Apple's Xcode 3
# integrated development environment, introduced with OSX 10.5 (Leopard).
# To create a documentation set, doxygen will generate a Makefile in the
# HTML output directory. Running make will produce the docset in that
# directory and running "make install" will install the docset in
# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find
# it at startup.
# See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html
# for more information.
GENERATE_DOCSET = NO
# When GENERATE_DOCSET tag is set to YES, this tag determines the name of the
# feed. A documentation feed provides an umbrella under which multiple
# documentation sets from a single provider (such as a company or product suite)
# can be grouped.
DOCSET_FEEDNAME = "Doxygen generated docs"
# When GENERATE_DOCSET tag is set to YES, this tag specifies a string that
# should uniquely identify the documentation set bundle. This should be a
# reverse domain-name style string, e.g. com.mycompany.MyDocSet. Doxygen
# will append .docset to the name.
DOCSET_BUNDLE_ID = org.doxygen.Project
# When GENERATE_PUBLISHER_ID tag specifies a string that should uniquely identify
# the documentation publisher. This should be a reverse domain-name style
# string, e.g. com.mycompany.MyDocSet.documentation.
DOCSET_PUBLISHER_ID = org.doxygen.Publisher
# The GENERATE_PUBLISHER_NAME tag identifies the documentation publisher.
DOCSET_PUBLISHER_NAME = Publisher
# If the GENERATE_HTMLHELP tag is set to YES, additional index files
# will be generated that can be used as input for tools like the
# Microsoft HTML help workshop to generate a compiled HTML help file (.chm)
# of the generated HTML documentation.
GENERATE_HTMLHELP = NO
# If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can
# be used to specify the file name of the resulting .chm file. You
# can add a path in front of the file if the result should not be
# written to the html output directory.
CHM_FILE =
# If the GENERATE_HTMLHELP tag is set to YES, the HHC_LOCATION tag can
# be used to specify the location (absolute path including file name) of
# the HTML help compiler (hhc.exe). If non-empty doxygen will try to run
# the HTML help compiler on the generated index.hhp.
HHC_LOCATION =
# If the GENERATE_HTMLHELP tag is set to YES, the GENERATE_CHI flag
# controls if a separate .chi index file is generated (YES) or that
# it should be included in the master .chm file (NO).
GENERATE_CHI = NO
# If the GENERATE_HTMLHELP tag is set to YES, the CHM_INDEX_ENCODING
# is used to encode HtmlHelp index (hhk), content (hhc) and project file
# content.
CHM_INDEX_ENCODING =
# If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag
# controls whether a binary table of contents is generated (YES) or a
# normal table of contents (NO) in the .chm file.
BINARY_TOC = NO
# The TOC_EXPAND flag can be set to YES to add extra items for group members
# to the contents of the HTML help documentation and to the tree view.
TOC_EXPAND = NO
# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and
# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated
# that can be used as input for Qt's qhelpgenerator to generate a
# Qt Compressed Help (.qch) of the generated HTML documentation.
GENERATE_QHP = @MITK_DOXYGEN_GENERATE_QHP@
# If the QHG_LOCATION tag is specified, the QCH_FILE tag can
# be used to specify the file name of the resulting .qch file.
# The path specified is relative to the HTML output folder.
QCH_FILE = @MITK_DOXYGEN_QCH_FILE@
# The QHP_NAMESPACE tag specifies the namespace to use when generating
# Qt Help Project output. For more information please see
# http://doc.trolltech.com/qthelpproject.html#namespace
QHP_NAMESPACE = "org.mitk"
# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating
# Qt Help Project output. For more information please see
# http://doc.trolltech.com/qthelpproject.html#virtual-folders
QHP_VIRTUAL_FOLDER = MITK
# If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to
# add. For more information please see
# http://doc.trolltech.com/qthelpproject.html#custom-filters
QHP_CUST_FILTER_NAME =
# The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the
# custom filter to add. For more information please see
#
# Qt Help Project / Custom Filters.
QHP_CUST_FILTER_ATTRS =
# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this
# project's
# filter section matches.
#
# Qt Help Project / Filter Attributes.
QHP_SECT_FILTER_ATTRS =
# If the GENERATE_QHP tag is set to YES, the QHG_LOCATION tag can
# be used to specify the location of Qt's qhelpgenerator.
# If non-empty doxygen will try to run qhelpgenerator on the generated
# .qhp file.
QHG_LOCATION = @QT_HELPGENERATOR_EXECUTABLE@
# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files
# will be generated, which together with the HTML files, form an Eclipse help
# plugin. To install this plugin and make it available under the help contents
# menu in Eclipse, the contents of the directory containing the HTML and XML
# files needs to be copied into the plugins directory of eclipse. The name of
# the directory within the plugins directory should be the same as
# the ECLIPSE_DOC_ID value. After copying Eclipse needs to be restarted before
# the help appears.
GENERATE_ECLIPSEHELP = NO
# A unique identifier for the eclipse help plugin. When installing the plugin
# the directory name containing the HTML and XML files should also have
# this name.
ECLIPSE_DOC_ID = org.doxygen.Project
# The DISABLE_INDEX tag can be used to turn on/off the condensed index (tabs)
# at top of each HTML page. The value NO (the default) enables the index and
# the value YES disables it. Since the tabs have the same information as the
# navigation tree you can set this option to NO if you already set
# GENERATE_TREEVIEW to YES.
DISABLE_INDEX = NO
# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
# structure should be generated to display hierarchical information.
# If the tag value is set to YES, a side panel will be generated
# containing a tree-like index structure (just like the one that
# is generated for HTML Help). For this to work a browser that supports
# JavaScript, DHTML, CSS and frames is required (i.e. any modern browser).
# Windows users are probably better off using the HTML help feature.
# Since the tree basically has the same information as the tab index you
# could consider to set DISABLE_INDEX to NO when enabling this option.
GENERATE_TREEVIEW = YES
# The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values
# (range [0,1..20]) that doxygen will group on one line in the generated HTML
# documentation. Note that a value of 0 will completely suppress the enum
# values from appearing in the overview section.
ENUM_VALUES_PER_LINE = 4
# By enabling USE_INLINE_TREES, doxygen will generate the Groups, Directories,
# and Class Hierarchy pages using a tree view instead of an ordered list.
USE_INLINE_TREES = NO
# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be
# used to set the initial width (in pixels) of the frame in which the tree
# is shown.
TREEVIEW_WIDTH = 300
# When the EXT_LINKS_IN_WINDOW option is set to YES doxygen will open
# links to external symbols imported via tag files in a separate window.
EXT_LINKS_IN_WINDOW = NO
# Use this tag to change the font size of Latex formulas included
# as images in the HTML documentation. The default is 10. Note that
# when you change the font size after a successful doxygen run you need
# to manually remove any form_*.png images from the HTML output directory
# to force them to be regenerated.
FORMULA_FONTSIZE = 10
# Use the FORMULA_TRANPARENT tag to determine whether or not the images
# generated for formulas are transparent PNGs. Transparent PNGs are
# not supported properly for IE 6.0, but are supported on all modern browsers.
# Note that when changing this option you need to delete any form_*.png files
# in the HTML output before the changes have effect.
FORMULA_TRANSPARENT = YES
# Enable the USE_MATHJAX option to render LaTeX formulas using MathJax
# (see http://www.mathjax.org) which uses client side Javascript for the
# rendering instead of using prerendered bitmaps. Use this if you do not
# have LaTeX installed or if you want to formulas look prettier in the HTML
# output. When enabled you may also need to install MathJax separately and
# configure the path to it using the MATHJAX_RELPATH option.
USE_MATHJAX = NO
# When MathJax is enabled you need to specify the location relative to the
# HTML output directory using the MATHJAX_RELPATH option. The destination
# directory should contain the MathJax.js script. For instance, if the mathjax
# directory is located at the same level as the HTML output directory, then
# MATHJAX_RELPATH should be ../mathjax. The default value points to
# the MathJax Content Delivery Network so you can quickly see the result without
# installing MathJax.
# However, it is strongly recommended to install a local
# copy of MathJax from http://www.mathjax.org before deployment.
MATHJAX_RELPATH = http://www.mathjax.org/mathjax
# The MATHJAX_EXTENSIONS tag can be used to specify one or MathJax extension
# names that should be enabled during MathJax rendering.
MATHJAX_EXTENSIONS =
# When the SEARCHENGINE tag is enabled doxygen will generate a search box
# for the HTML output. The underlying search engine uses javascript
# and DHTML and should work on any modern browser. Note that when using
# HTML help (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets
# (GENERATE_DOCSET) there is already a search function so this one should
# typically be disabled. For large projects the javascript based search engine
# can be slow, then enabling SERVER_BASED_SEARCH may provide a better solution.
SEARCHENGINE = YES
# When the SERVER_BASED_SEARCH tag is enabled the search engine will be
# implemented using a PHP enabled web server instead of at the web client
# using Javascript. Doxygen will generate the search PHP script and index
# file to put on the web server. The advantage of the server
# based approach is that it scales better to large projects and allows
# full text search. The disadvantages are that it is more difficult to setup
# and does not have live searching capabilities.
SERVER_BASED_SEARCH = NO
#---------------------------------------------------------------------------
# configuration options related to the LaTeX output
#---------------------------------------------------------------------------
# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will
# generate Latex output.
GENERATE_LATEX = NO
# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put.
# If a relative path is entered the value of OUTPUT_DIRECTORY will be
# put in front of it. If left blank `latex' will be used as the default path.
LATEX_OUTPUT = latex
# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
# invoked. If left blank `latex' will be used as the default command name.
# Note that when enabling USE_PDFLATEX this option is only used for
# generating bitmaps for formulas in the HTML output, but not in the
# Makefile that is written to the output directory.
LATEX_CMD_NAME = latex
# The MAKEINDEX_CMD_NAME tag can be used to specify the command name to
# generate index for LaTeX. If left blank `makeindex' will be used as the
# default command name.
MAKEINDEX_CMD_NAME = makeindex
# If the COMPACT_LATEX tag is set to YES Doxygen generates more compact
# LaTeX documents. This may be useful for small projects and may help to
# save some trees in general.
COMPACT_LATEX = NO
# The PAPER_TYPE tag can be used to set the paper type that is used
# by the printer. Possible values are: a4, letter, legal and
# executive. If left blank a4wide will be used.
PAPER_TYPE = a4wide
# The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX
# packages that should be included in the LaTeX output.
EXTRA_PACKAGES = amssymb
# The LATEX_HEADER tag can be used to specify a personal LaTeX header for
# the generated latex document. The header should contain everything until
# the first chapter. If it is left blank doxygen will generate a
# standard header. Notice: only use this tag if you know what you are doing!
LATEX_HEADER =
# The LATEX_FOOTER tag can be used to specify a personal LaTeX footer for
# the generated latex document. The footer should contain everything after
# the last chapter. If it is left blank doxygen will generate a
# standard footer. Notice: only use this tag if you know what you are doing!
LATEX_FOOTER =
# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated
# is prepared for conversion to pdf (using ps2pdf). The pdf file will
# contain links (just like the HTML output) instead of page references
# This makes the output suitable for online browsing using a pdf viewer.
PDF_HYPERLINKS = NO
# If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of
# plain latex in the generated Makefile. Set this option to YES to get a
# higher quality PDF documentation.
USE_PDFLATEX = NO
# If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode.
# command to the generated LaTeX files. This will instruct LaTeX to keep
# running if errors occur, instead of asking the user for help.
# This option is also used when generating formulas in HTML.
LATEX_BATCHMODE = NO
# If LATEX_HIDE_INDICES is set to YES then doxygen will not
# include the index chapters (such as File Index, Compound Index, etc.)
# in the output.
LATEX_HIDE_INDICES = NO
# If LATEX_SOURCE_CODE is set to YES then doxygen will include
# source code with syntax highlighting in the LaTeX output.
# Note that which sources are shown also depends on other settings
# such as SOURCE_BROWSER.
LATEX_SOURCE_CODE = NO
# The LATEX_BIB_STYLE tag can be used to specify the style to use for the
# bibliography, e.g. plainnat, or ieeetr. The default style is "plain". See
# http://en.wikipedia.org/wiki/BibTeX for more info.
LATEX_BIB_STYLE = plain
#---------------------------------------------------------------------------
# configuration options related to the RTF output
#---------------------------------------------------------------------------
# If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output
# The RTF output is optimized for Word 97 and may not look very pretty with
# other RTF readers or editors.
GENERATE_RTF = NO
# The RTF_OUTPUT tag is used to specify where the RTF docs will be put.
# If a relative path is entered the value of OUTPUT_DIRECTORY will be
# put in front of it. If left blank `rtf' will be used as the default path.
RTF_OUTPUT = rtf
# If the COMPACT_RTF tag is set to YES Doxygen generates more compact
# RTF documents. This may be useful for small projects and may help to
# save some trees in general.
COMPACT_RTF = NO
# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated
# will contain hyperlink fields. The RTF file will
# contain links (just like the HTML output) instead of page references.
# This makes the output suitable for online browsing using WORD or other
# programs which support those fields.
# Note: wordpad (write) and others do not support links.
RTF_HYPERLINKS = NO
# Load style sheet definitions from file. Syntax is similar to doxygen's
# config file, i.e. a series of assignments. You only have to provide
# replacements, missing definitions are set to their default value.
RTF_STYLESHEET_FILE =
# Set optional variables used in the generation of an rtf document.
# Syntax is similar to doxygen's config file.
RTF_EXTENSIONS_FILE =
#---------------------------------------------------------------------------
# configuration options related to the man page output
#---------------------------------------------------------------------------
# If the GENERATE_MAN tag is set to YES (the default) Doxygen will
# generate man pages
GENERATE_MAN = NO
# The MAN_OUTPUT tag is used to specify where the man pages will be put.
# If a relative path is entered the value of OUTPUT_DIRECTORY will be
# put in front of it. If left blank `man' will be used as the default path.
MAN_OUTPUT = man
# The MAN_EXTENSION tag determines the extension that is added to
# the generated man pages (default is the subroutine's section .3)
MAN_EXTENSION = .3
# If the MAN_LINKS tag is set to YES and Doxygen generates man output,
# then it will generate one additional man file for each entity
# documented in the real man page(s). These additional files
# only source the real man page, but without them the man command
# would be unable to find the correct page. The default is NO.
MAN_LINKS = NO
#---------------------------------------------------------------------------
# configuration options related to the XML output
#---------------------------------------------------------------------------
# If the GENERATE_XML tag is set to YES Doxygen will
# generate an XML file that captures the structure of
# the code including all documentation.
GENERATE_XML = NO
# The XML_OUTPUT tag is used to specify where the XML pages will be put.
# If a relative path is entered the value of OUTPUT_DIRECTORY will be
# put in front of it. If left blank `xml' will be used as the default path.
XML_OUTPUT = xml
# The XML_SCHEMA tag can be used to specify an XML schema,
# which can be used by a validating XML parser to check the
# syntax of the XML files.
XML_SCHEMA =
# The XML_DTD tag can be used to specify an XML DTD,
# which can be used by a validating XML parser to check the
# syntax of the XML files.
XML_DTD =
# If the XML_PROGRAMLISTING tag is set to YES Doxygen will
# dump the program listings (including syntax highlighting
# and cross-referencing information) to the XML output. Note that
# enabling this will significantly increase the size of the XML output.
XML_PROGRAMLISTING = YES
#---------------------------------------------------------------------------
# configuration options for the AutoGen Definitions output
#---------------------------------------------------------------------------
# If the GENERATE_AUTOGEN_DEF tag is set to YES Doxygen will
# generate an AutoGen Definitions (see autogen.sf.net) file
# that captures the structure of the code including all
# documentation. Note that this feature is still experimental
# and incomplete at the moment.
GENERATE_AUTOGEN_DEF = NO
#---------------------------------------------------------------------------
# configuration options related to the Perl module output
#---------------------------------------------------------------------------
# If the GENERATE_PERLMOD tag is set to YES Doxygen will
# generate a Perl module file that captures the structure of
# the code including all documentation. Note that this
# feature is still experimental and incomplete at the
# moment.
GENERATE_PERLMOD = NO
# If the PERLMOD_LATEX tag is set to YES Doxygen will generate
# the necessary Makefile rules, Perl scripts and LaTeX code to be able
# to generate PDF and DVI output from the Perl module output.
PERLMOD_LATEX = NO
# If the PERLMOD_PRETTY tag is set to YES the Perl module output will be
# nicely formatted so it can be parsed by a human reader.
# This is useful
# if you want to understand what is going on.
# On the other hand, if this
# tag is set to NO the size of the Perl module output will be much smaller
# and Perl will parse it just the same.
PERLMOD_PRETTY = YES
# The names of the make variables in the generated doxyrules.make file
# are prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX.
# This is useful so different doxyrules.make files included by the same
# Makefile don't overwrite each other's variables.
PERLMOD_MAKEVAR_PREFIX =
#---------------------------------------------------------------------------
# Configuration options related to the preprocessor
#---------------------------------------------------------------------------
# If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will
# evaluate all C-preprocessor directives found in the sources and include
# files.
ENABLE_PREPROCESSING = YES
# If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro
# names in the source code. If set to NO (the default) only conditional
# compilation will be performed. Macro expansion can be done in a controlled
# way by setting EXPAND_ONLY_PREDEF to YES.
MACRO_EXPANSION = YES
# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES
# then the macro expansion is limited to the macros specified with the
# PREDEFINED and EXPAND_AS_DEFINED tags.
EXPAND_ONLY_PREDEF = NO
# If the SEARCH_INCLUDES tag is set to YES (the default) the includes files
# pointed to by INCLUDE_PATH will be searched when a #include is found.
SEARCH_INCLUDES = YES
# The INCLUDE_PATH tag can be used to specify one or more directories that
# contain include files that are not input files but should be processed by
# the preprocessor.
INCLUDE_PATH =
# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard
# patterns (like *.h and *.hpp) to filter out the header-files in the
# directories. If left blank, the patterns specified with FILE_PATTERNS will
# be used.
INCLUDE_FILE_PATTERNS =
# The PREDEFINED tag can be used to specify one or more macro names that
# are defined before the preprocessor is started (similar to the -D option of
# gcc). The argument of the tag is a list of macros of the form: name
# or name=definition (no spaces). If the definition and the = are
# omitted =1 is assumed. To prevent a macro definition from being
# undefined via #undef or recursively expanded use the := operator
# instead of the = operator.
PREDEFINED = itkNotUsed(x)= \
"itkSetMacro(name,type)= virtual void Set##name (type _arg);" \
"itkGetMacro(name,type)= virtual type Get##name ();" \
"itkGetConstMacro(name,type)= virtual type Get##name () const;" \
"itkSetStringMacro(name)= virtual void Set##name (const char* _arg);" \
"itkGetStringMacro(name)= virtual const char* Get##name () const;" \
"itkSetClampMacro(name,type,min,max)= virtual void Set##name (type _arg);" \
"itkSetObjectMacro(name,type)= virtual void Set##name (type* _arg);" \
"itkGetObjectMacro(name,type)= virtual type* Get##name ();" \
"itkSetConstObjectMacro(name,type)= virtual void Set##name ( const type* _arg);" \
"itkGetConstObjectMacro(name,type)= virtual const type* Get##name ();" \
"itkGetConstReferenceMacro(name,type)= virtual const type& Get##name ();" \
"itkGetConstReferenceObjectMacro(name,type)= virtual const type::Pointer& Get##name () const;" \
"itkBooleanMacro(name)= virtual void name##On (); virtual void name##Off ();" \
"itkSetVector2Macro(name,type)= virtual void Set##name (type _arg1, type _arg2) virtual void Set##name (type _arg[2]);" \
"itkGetVector2Macro(name,type)= virtual type* Get##name () const; virtual void Get##name (type& _arg1, type& _arg2) const; virtual void Get##name (type _arg[2]) const;" \
"itkSetVector3Macro(name,type)= virtual void Set##name (type _arg1, type _arg2, type _arg3) virtual void Set##name (type _arg[3]);" \
"itkGetVector3Macro(name,type)= virtual type* Get##name () const; virtual void Get##name (type& _arg1, type& _arg2, type& _arg3) const; virtual void Get##name (type _arg[3]) const;" \
"itkSetVector4Macro(name,type)= virtual void Set##name (type _arg1, type _arg2, type _arg3, type _arg4) virtual void Set##name (type _arg[4]);" \
"itkGetVector4Macro(name,type)= virtual type* Get##name () const; virtual void Get##name (type& _arg1, type& _arg2, type& _arg3, type& _arg4) const; virtual void Get##name (type _arg[4]) const;" \
"itkSetVector6Macro(name,type)= virtual void Set##name (type _arg1, type _arg2, type _arg3, type _arg4, type _arg5, type _arg6) virtual void Set##name (type _arg[6]);" \
"itkGetVector6Macro(name,type)= virtual type* Get##name () const; virtual void Get##name (type& _arg1, type& _arg2, type& _arg3, type& _arg4, type& _arg5, type& _arg6) const; virtual void Get##name (type _arg[6]) const;" \
"itkSetVectorMacro(name,type,count)= virtual void Set##name(type data[]);" \
"itkGetVectorMacro(name,type,count)= virtual type* Get##name () const;" \
"itkNewMacro(type)= static Pointer New();" \
"itkTypeMacro(thisClass,superclass)= virtual const char *GetClassName() const;" \
"itkConceptMacro(name,concept)= enum { name = 0 };" \
"ITK_NUMERIC_LIMITS= std::numeric_limits" \
"ITK_TYPENAME= typename" \
"FEM_ABSTRACT_CLASS(thisClass,parentClass)= public: /** Standard Self typedef.*/ typedef thisClass Self; /** Standard Superclass typedef. */ typedef parentClass Superclass; /** Pointer or SmartPointer to an object. */ typedef Self* Pointer; /** Const pointer or SmartPointer to an object. */ typedef const Self* ConstPointer; private:" \
"FEM_CLASS(thisClass,parentClass)= FEM_ABSTRACT_CLASS(thisClass,parentClass) public: /** Create a new object from the existing one */ virtual Baseclass::Pointer Clone() const; /** Class ID for FEM object factory */ static const int CLID; /** Virtual function to access the class ID */ virtual int ClassID() const { return CLID; } /** Object creation in an itk compatible way */ static Self::Pointer New() { return new Self(); } private:" \
FREEVERSION \
ERROR_CHECKING \
HAS_TIFF \
HAS_JPEG \
HAS_NETLIB \
HAS_PNG \
HAS_ZLIB \
HAS_GLUT \
HAS_QT \
VCL_USE_NATIVE_STL=1 \
VCL_USE_NATIVE_COMPLEX=1 \
VCL_HAS_BOOL=1 \
VXL_BIG_ENDIAN=1 \
VXL_LITTLE_ENDIAN=0 \
VNL_DLL_DATA= \
size_t=vcl_size_t \
- "US_PREPEND_NAMESPACE(x)=us::x" \
- "US_BEGIN_NAMESPACE= namespace us {" \
+ "US_PREPEND_NAMESPACE(x)=mitk::x" \
+ "US_BEGIN_NAMESPACE= namespace mitk {" \
"US_END_NAMESPACE=}" \
+ "US_BASECLASS_NAME=itk::LightObject" \
US_EXPORT= \
"DEPRECATED(func)=func"
# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then
# this tag can be used to specify a list of macro names that should be expanded.
# The macro definition that is found in the sources will be used.
# Use the PREDEFINED tag if you want to use a different macro definition that
# overrules the definition found in the source code.
EXPAND_AS_DEFINED =
# If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then
# doxygen's preprocessor will remove all references to function-like macros
# that are alone on a line, have an all uppercase name, and do not end with a
# semicolon, because these will confuse the parser if not removed.
SKIP_FUNCTION_MACROS = YES
#---------------------------------------------------------------------------
# Configuration::additions related to external references
#---------------------------------------------------------------------------
# The TAGFILES option can be used to specify one or more tagfiles. For each
# tag file the location of the external documentation should be added. The
# format of a tag file without this location is as follows:
#
# TAGFILES = file1 file2 ...
# Adding location for the tag files is done as follows:
#
# TAGFILES = file1=loc1 "file2 = loc2" ...
# where "loc1" and "loc2" can be relative or absolute paths
# or URLs. Note that each tag file must have a unique name (where the name does
# NOT include the path). If a tag file is not located in the directory in which
# doxygen is run, you must also specify the path to the tagfile here.
-TAGFILES =
+TAGFILES = @BLUEBERRY_DOXYGEN_TAGFILE@
# When a file name is specified after GENERATE_TAGFILE, doxygen will create
# a tag file that is based on the input files it reads.
GENERATE_TAGFILE = @MITK_DOXYGEN_TAGFILE_NAME@
# If the ALLEXTERNALS tag is set to YES all external classes will be listed
# in the class index. If set to NO only the inherited external classes
# will be listed.
ALLEXTERNALS = NO
# If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed
# in the modules index. If set to NO, only the current project's groups will
# be listed.
EXTERNAL_GROUPS = NO
# The PERL_PATH should be the absolute path and name of the perl script
# interpreter (i.e. the result of `which perl').
PERL_PATH = /usr/bin/perl
#---------------------------------------------------------------------------
# Configuration options related to the dot tool
#---------------------------------------------------------------------------
# If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will
# generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base
# or super classes. Setting the tag to NO turns the diagrams off. Note that
# this option also works with HAVE_DOT disabled, but it is recommended to
# install and use dot, since it yields more powerful graphs.
CLASS_DIAGRAMS = YES
# You can define message sequence charts within doxygen comments using the \msc
# command. Doxygen will then run the mscgen tool (see
# http://www.mcternan.me.uk/mscgen/) to produce the chart and insert it in the
# documentation. The MSCGEN_PATH tag allows you to specify the directory where
# the mscgen tool resides. If left empty the tool is assumed to be found in the
# default search path.
MSCGEN_PATH =
# If set to YES, the inheritance and collaboration graphs will hide
# inheritance and usage relations if the target is undocumented
# or is not a class.
HIDE_UNDOC_RELATIONS = YES
# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is
# available from the path. This tool is part of Graphviz, a graph visualization
# toolkit from AT&T and Lucent Bell Labs. The other options in this section
# have no effect if this option is set to NO (the default)
HAVE_DOT = @HAVE_DOT@
# The DOT_NUM_THREADS specifies the number of dot invocations doxygen is
# allowed to run in parallel. When set to 0 (the default) doxygen will
# base this on the number of processors available in the system. You can set it
# explicitly to a value larger than 0 to get control over the balance
# between CPU load and processing speed.
DOT_NUM_THREADS = @MITK_DOXYGEN_DOT_NUM_THREADS@
# By default doxygen will use the Helvetica font for all dot files that
# doxygen generates. When you want a differently looking font you can specify
# the font name using DOT_FONTNAME. You need to make sure dot is able to find
# the font, which can be done by putting it in a standard location or by setting
# the DOTFONTPATH environment variable or by setting DOT_FONTPATH to the
# directory containing the font.
DOT_FONTNAME = FreeSans.ttf
# The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs.
# The default size is 10pt.
DOT_FONTSIZE = 10
# By default doxygen will tell dot to use the Helvetica font.
# If you specify a different font using DOT_FONTNAME you can use DOT_FONTPATH to
# set the path where dot can find it.
DOT_FONTPATH =
# If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen
# will generate a graph for each documented class showing the direct and
# indirect inheritance relations. Setting this tag to YES will force the
# CLASS_DIAGRAMS tag to NO.
CLASS_GRAPH = YES
# If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen
# will generate a graph for each documented class showing the direct and
# indirect implementation dependencies (inheritance, containment, and
# class references variables) of the class with other documented classes.
COLLABORATION_GRAPH = YES
# If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen
# will generate a graph for groups, showing the direct groups dependencies
GROUP_GRAPHS = YES
# If the UML_LOOK tag is set to YES doxygen will generate inheritance and
# collaboration diagrams in a style similar to the OMG's Unified Modeling
# Language.
UML_LOOK = @MITK_DOXYGEN_UML_LOOK@
# If the UML_LOOK tag is enabled, the fields and methods are shown inside
# the class node. If there are many fields or methods and many nodes the
# graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS
# threshold limits the number of items for each type to make the size more
# managable. Set this to 0 for no limit. Note that the threshold may be
# exceeded by 50% before the limit is enforced.
UML_LIMIT_NUM_FIELDS = 10
# If set to YES, the inheritance and collaboration graphs will show the
# relations between templates and their instances.
TEMPLATE_RELATIONS = YES
# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT
# tags are set to YES then doxygen will generate a graph for each documented
# file showing the direct and indirect include dependencies of the file with
# other documented files.
INCLUDE_GRAPH = NO
# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and
# HAVE_DOT tags are set to YES then doxygen will generate a graph for each
# documented header file showing the documented files that directly or
# indirectly include this file.
INCLUDED_BY_GRAPH = NO
# If the CALL_GRAPH and HAVE_DOT options are set to YES then
# doxygen will generate a call dependency graph for every global function
# or class method. Note that enabling this option will significantly increase
# the time of a run. So in most cases it will be better to enable call graphs
# for selected functions only using the \callgraph command.
CALL_GRAPH = NO
# If the CALLER_GRAPH and HAVE_DOT tags are set to YES then
# doxygen will generate a caller dependency graph for every global function
# or class method. Note that enabling this option will significantly increase
# the time of a run. So in most cases it will be better to enable caller
# graphs for selected functions only using the \callergraph command.
CALLER_GRAPH = NO
# If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen
# will generate a graphical hierarchy of all classes instead of a textual one.
GRAPHICAL_HIERARCHY = NO
# If the DIRECTORY_GRAPH, SHOW_DIRECTORIES and HAVE_DOT tags are set to YES
# then doxygen will show the dependencies a directory has on other directories
# in a graphical way. The dependency relations are determined by the #include
# relations between the files in the directories.
DIRECTORY_GRAPH = YES
# The DOT_IMAGE_FORMAT tag can be used to set the image format of the images
# generated by dot. Possible values are svg, png, jpg, or gif.
# If left blank png will be used. If you choose svg you need to set
# HTML_FILE_EXTENSION to xhtml in order to make the SVG files
# visible in IE 9+ (other browsers do not have this requirement).
DOT_IMAGE_FORMAT = png
# If DOT_IMAGE_FORMAT is set to svg, then this option can be set to YES to
# enable generation of interactive SVG images that allow zooming and panning.
# Note that this requires a modern browser other than Internet Explorer.
# Tested and working are Firefox, Chrome, Safari, and Opera. For IE 9+ you
# need to set HTML_FILE_EXTENSION to xhtml in order to make the SVG files
# visible. Older versions of IE do not have SVG support.
INTERACTIVE_SVG = NO
# The tag DOT_PATH can be used to specify the path where the dot tool can be
# found. If left blank, it is assumed the dot tool can be found in the path.
DOT_PATH = @DOXYGEN_DOT_PATH@
# The DOTFILE_DIRS tag can be used to specify one or more directories that
# contain dot files that are included in the documentation (see the
# \dotfile command).
DOTFILE_DIRS =
# The MSCFILE_DIRS tag can be used to specify one or more directories that
# contain msc files that are included in the documentation (see the
# \mscfile command).
MSCFILE_DIRS =
# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of
# nodes that will be shown in the graph. If the number of nodes in a graph
# becomes larger than this value, doxygen will truncate the graph, which is
# visualized by representing a node as a red box. Note that doxygen if the
# number of direct children of the root node in a graph is already larger than
# DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note
# that the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH.
DOT_GRAPH_MAX_NODES = 50
# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the
# graphs generated by dot. A depth value of 3 means that only nodes reachable
# from the root by following a path via at most 3 edges will be shown. Nodes
# that lay further from the root node will be omitted. Note that setting this
# option to 1 or 2 may greatly reduce the computation time needed for large
# code bases. Also note that the size of a graph can be further restricted by
# DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction.
MAX_DOT_GRAPH_DEPTH = 0
# Set the DOT_TRANSPARENT tag to YES to generate images with a transparent
# background. This is disabled by default, because dot on Windows does not
# seem to support this out of the box. Warning: Depending on the platform used,
# enabling this option may lead to badly anti-aliased labels on the edges of
# a graph (i.e. they become hard to read).
DOT_TRANSPARENT = NO
# Set the DOT_MULTI_TARGETS tag to YES allow dot to generate multiple output
# files in one run (i.e. multiple -o and -T options on the command line). This
# makes dot run faster, but since only newer versions of dot (>1.8.10)
# support this, this feature is disabled by default.
DOT_MULTI_TARGETS = NO
# If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will
# generate a legend page explaining the meaning of the various boxes and
# arrows in the dot generated graphs.
GENERATE_LEGEND = YES
# If the DOT_CLEANUP tag is set to YES (the default) Doxygen will
# remove the intermediate dot files that are used to generate
# the various graphs.
DOT_CLEANUP = YES
diff --git a/Modules/ImageExtraction/CMakeLists.txt b/Modules/ImageExtraction/CMakeLists.txt
index 51327efccc..41b3ebf9ad 100644
--- a/Modules/ImageExtraction/CMakeLists.txt
+++ b/Modules/ImageExtraction/CMakeLists.txt
@@ -1,10 +1,9 @@
MITK_CREATE_MODULE( ImageExtraction
DEPENDS Mitk mitkIpPic PlanarFigure
- DEPENDS_INTERNAL pic2vtk
)
if(BUILD_TESTING)
add_subdirectory(Testing)
endif(BUILD_TESTING)
diff --git a/Modules/ImageExtraction/mitkExtractDirectedPlaneImageFilter.cpp b/Modules/ImageExtraction/mitkExtractDirectedPlaneImageFilter.cpp
index 68c2a59a8c..a1883fa717 100644
--- a/Modules/ImageExtraction/mitkExtractDirectedPlaneImageFilter.cpp
+++ b/Modules/ImageExtraction/mitkExtractDirectedPlaneImageFilter.cpp
@@ -1,511 +1,508 @@
/*===================================================================
The Medical Imaging Interaction Toolkit (MITK)
Copyright (c) German Cancer Research Center,
Division of Medical and Biological Informatics.
All rights reserved.
This software is distributed WITHOUT ANY WARRANTY; without
even the implied warranty of MERCHANTABILITY or FITNESS FOR
A PARTICULAR PURPOSE.
See LICENSE.txt or http://www.mitk.org for details.
===================================================================*/
#include "mitkExtractDirectedPlaneImageFilter.h"
#include "mitkAbstractTransformGeometry.h"
//#include "mitkImageMapperGL2D.h"
#include
#include
#include
#include
#include "vtkMitkThickSlicesFilter.h"
#include
#include
#include
#include
#include
#include
#include
-#include "pic2vtk.h"
-
-
mitk::ExtractDirectedPlaneImageFilter::ExtractDirectedPlaneImageFilter()
: m_WorldGeometry(NULL)
{
MITK_WARN << "Class ExtractDirectedPlaneImageFilter is deprecated! Use ExtractSliceFilter instead.";
m_Reslicer = vtkImageReslice::New();
m_TargetTimestep = 0;
m_InPlaneResampleExtentByGeometry = true;
m_ResliceInterpolationProperty = NULL;//VtkResliceInterpolationProperty::New(); //TODO initial with value
m_ThickSlicesMode = 0;
m_ThickSlicesNum = 1;
}
mitk::ExtractDirectedPlaneImageFilter::~ExtractDirectedPlaneImageFilter()
{
if(m_ResliceInterpolationProperty!=NULL)m_ResliceInterpolationProperty->Delete();
m_Reslicer->Delete();
}
void mitk::ExtractDirectedPlaneImageFilter::GenerateData()
{
// A world geometry must be set...
if ( m_WorldGeometry == NULL )
{
itkWarningMacro(<<"No world geometry has been set. Returning.");
return;
}
Image *input = const_cast< ImageToImageFilter::InputImageType* >( this->GetInput() );
input->Update();
if ( input == NULL )
{
itkWarningMacro(<<"No input set.");
return;
}
const TimeSlicedGeometry *inputTimeGeometry = input->GetTimeSlicedGeometry();
if ( ( inputTimeGeometry == NULL )
|| ( inputTimeGeometry->GetTimeSteps() == 0 ) )
{
itkWarningMacro(<<"Error reading input image geometry.");
return;
}
// Get the target timestep; if none is set, use the lowest given.
unsigned int timestep = 0;
if ( ! m_TargetTimestep )
{
ScalarType time = m_WorldGeometry->GetTimeBounds()[0];
if ( time > ScalarTypeNumericTraits::NonpositiveMin() )
{
timestep = inputTimeGeometry->MSToTimeStep( time );
}
}
else timestep = m_TargetTimestep;
if ( inputTimeGeometry->IsValidTime( timestep ) == false )
{
itkWarningMacro(<<"This is not a valid timestep: "<IsVolumeSet( timestep ) )
{
itkWarningMacro(<<"No volume data existent at given timestep "<GetLargestPossibleRegion();
requestedRegion.SetIndex( 3, timestep );
requestedRegion.SetSize( 3, 1 );
requestedRegion.SetSize( 4, 1 );
input->SetRequestedRegion( &requestedRegion );
input->Update();
vtkImageData* inputData = input->GetVtkImageData( timestep );
if ( inputData == NULL )
{
itkWarningMacro(<<"Could not extract vtk image data for given timestep"<GetSpacing( spacing );
// how big the area is in physical coordinates: widthInMM x heightInMM pixels
mitk::ScalarType widthInMM, heightInMM;
// where we want to sample
Point3D origin;
Vector3D right, bottom, normal;
Vector3D rightInIndex, bottomInIndex;
assert( input->GetTimeSlicedGeometry() == inputTimeGeometry );
// take transform of input image into account
Geometry3D* inputGeometry = inputTimeGeometry->GetGeometry3D( timestep );
if ( inputGeometry == NULL )
{
itkWarningMacro(<<"There is no Geometry3D at given timestep "<( m_WorldGeometry ) != NULL )
{
const PlaneGeometry *planeGeometry =
static_cast< const PlaneGeometry * >( m_WorldGeometry );
origin = planeGeometry->GetOrigin();
right = planeGeometry->GetAxisVector( 0 );
bottom = planeGeometry->GetAxisVector( 1 );
normal = planeGeometry->GetNormal();
if ( m_InPlaneResampleExtentByGeometry )
{
// Resampling grid corresponds to the current world geometry. This
// means that the spacing of the output 2D image depends on the
// currently selected world geometry, and *not* on the image itself.
extent[0] = m_WorldGeometry->GetExtent( 0 );
extent[1] = m_WorldGeometry->GetExtent( 1 );
}
else
{
// Resampling grid corresponds to the input geometry. This means that
// the spacing of the output 2D image is directly derived from the
// associated input image, regardless of the currently selected world
// geometry.
inputGeometry->WorldToIndex( right, rightInIndex );
inputGeometry->WorldToIndex( bottom, bottomInIndex );
extent[0] = rightInIndex.GetNorm();
extent[1] = bottomInIndex.GetNorm();
}
// Get the extent of the current world geometry and calculate resampling
// spacing therefrom.
widthInMM = m_WorldGeometry->GetExtentInMM( 0 );
heightInMM = m_WorldGeometry->GetExtentInMM( 1 );
mmPerPixel[0] = widthInMM / extent[0];
mmPerPixel[1] = heightInMM / extent[1];
right.Normalize();
bottom.Normalize();
normal.Normalize();
//origin += right * ( mmPerPixel[0] * 0.5 );
//origin += bottom * ( mmPerPixel[1] * 0.5 );
//widthInMM -= mmPerPixel[0];
//heightInMM -= mmPerPixel[1];
// Use inverse transform of the input geometry for reslicing the 3D image
m_Reslicer->SetResliceTransform(
inputGeometry->GetVtkTransform()->GetLinearInverse() );
// Set background level to TRANSLUCENT (see Geometry2DDataVtkMapper3D)
m_Reslicer->SetBackgroundLevel( -32768 );
// Check if a reference geometry does exist (as would usually be the case for
// PlaneGeometry).
// Note: this is currently not strictly required, but could facilitate
// correct plane clipping.
if ( m_WorldGeometry->GetReferenceGeometry() )
{
// Calculate the actual bounds of the transformed plane clipped by the
// dataset bounding box; this is required for drawing the texture at the
// correct position during 3D mapping.
boundsInitialized = this->CalculateClippedPlaneBounds(
m_WorldGeometry->GetReferenceGeometry(), planeGeometry, bounds );
}
}
// Do we have an AbstractTransformGeometry?
else if ( dynamic_cast< const AbstractTransformGeometry * >( m_WorldGeometry ) )
{
const mitk::AbstractTransformGeometry* abstractGeometry =
dynamic_cast< const AbstractTransformGeometry * >(m_WorldGeometry);
extent[0] = abstractGeometry->GetParametricExtent(0);
extent[1] = abstractGeometry->GetParametricExtent(1);
widthInMM = abstractGeometry->GetParametricExtentInMM(0);
heightInMM = abstractGeometry->GetParametricExtentInMM(1);
mmPerPixel[0] = widthInMM / extent[0];
mmPerPixel[1] = heightInMM / extent[1];
origin = abstractGeometry->GetPlane()->GetOrigin();
right = abstractGeometry->GetPlane()->GetAxisVector(0);
right.Normalize();
bottom = abstractGeometry->GetPlane()->GetAxisVector(1);
bottom.Normalize();
normal = abstractGeometry->GetPlane()->GetNormal();
normal.Normalize();
// Use a combination of the InputGeometry *and* the possible non-rigid
// AbstractTransformGeometry for reslicing the 3D Image
vtkGeneralTransform *composedResliceTransform = vtkGeneralTransform::New();
composedResliceTransform->Identity();
composedResliceTransform->Concatenate(
inputGeometry->GetVtkTransform()->GetLinearInverse() );
composedResliceTransform->Concatenate(
abstractGeometry->GetVtkAbstractTransform()
);
m_Reslicer->SetResliceTransform( composedResliceTransform );
// Set background level to BLACK instead of translucent, to avoid
// boundary artifacts (see Geometry2DDataVtkMapper3D)
m_Reslicer->SetBackgroundLevel( -1023 );
composedResliceTransform->Delete();
}
else
{
itkWarningMacro(<<"World Geometry has to be a PlaneGeometry or an AbstractTransformGeometry.");
return;
}
// Make sure that the image to be resliced has a certain minimum size.
if ( (extent[0] <= 2) && (extent[1] <= 2) )
{
itkWarningMacro(<<"Image is too small to be resliced...");
return;
}
vtkImageChangeInformation * unitSpacingImageFilter = vtkImageChangeInformation::New() ;
unitSpacingImageFilter->SetOutputSpacing( 1.0, 1.0, 1.0 );
unitSpacingImageFilter->SetInput( inputData );
m_Reslicer->SetInput( unitSpacingImageFilter->GetOutput() );
unitSpacingImageFilter->Delete();
//m_Reslicer->SetInput( inputData );
m_Reslicer->SetOutputDimensionality( 2 );
m_Reslicer->SetOutputOrigin( 0.0, 0.0, 0.0 );
Vector2D pixelsPerMM;
pixelsPerMM[0] = 1.0 / mmPerPixel[0];
pixelsPerMM[1] = 1.0 / mmPerPixel[1];
//calulate the originArray and the orientations for the reslice-filter
double originArray[3];
itk2vtk( origin, originArray );
m_Reslicer->SetResliceAxesOrigin( originArray );
double cosines[9];
// direction of the X-axis of the sampled result
vnl2vtk( right.GetVnlVector(), cosines );
// direction of the Y-axis of the sampled result
vnl2vtk( bottom.GetVnlVector(), cosines + 3 );
// normal of the plane
vnl2vtk( normal.GetVnlVector(), cosines + 6 );
m_Reslicer->SetResliceAxesDirectionCosines( cosines );
int xMin, xMax, yMin, yMax;
if ( boundsInitialized )
{
xMin = static_cast< int >( bounds[0] / mmPerPixel[0] );//+ 0.5 );
xMax = static_cast< int >( bounds[1] / mmPerPixel[0] );//+ 0.5 );
yMin = static_cast< int >( bounds[2] / mmPerPixel[1] );//+ 0.5);
yMax = static_cast< int >( bounds[3] / mmPerPixel[1] );//+ 0.5 );
}
else
{
// If no reference geometry is available, we also don't know about the
// maximum plane size; so the overlap is just ignored
xMin = yMin = 0;
xMax = static_cast< int >( extent[0] - pixelsPerMM[0] );//+ 0.5 );
yMax = static_cast< int >( extent[1] - pixelsPerMM[1] );//+ 0.5 );
}
m_Reslicer->SetOutputSpacing( mmPerPixel[0], mmPerPixel[1], 1.0 );
// xMax and yMax are meant exclusive until now, whereas
// SetOutputExtent wants an inclusive bound. Thus, we need
// to subtract 1.
m_Reslicer->SetOutputExtent( xMin, xMax-1, yMin, yMax-1, 0, 1 );
// Do the reslicing. Modified() is called to make sure that the reslicer is
// executed even though the input geometry information did not change; this
// is necessary when the input /em data, but not the /em geometry changes.
m_Reslicer->Modified();
m_Reslicer->ReleaseDataFlagOn();
m_Reslicer->Update();
// 1. Check the result
vtkImageData* reslicedImage = m_Reslicer->GetOutput();
//mitkIpPicDescriptor *pic = Pic2vtk::convert( reslicedImage );
if((reslicedImage == NULL) || (reslicedImage->GetDataDimension() < 1))
{
itkWarningMacro(<<"Reslicer returned empty image");
return;
}
unsigned int dimensions[2];
dimensions[0] = (unsigned int)extent[0]; dimensions[1] = (unsigned int)extent[1];
Vector3D spacingVector;
FillVector3D(spacingVector, mmPerPixel[0], mmPerPixel[1], 1.0);
mitk::Image::Pointer resultImage = this->GetOutput();
resultImage->Initialize(input->GetPixelType(), 2, dimensions );
//resultImage->Initialize( pic );
resultImage->SetSpacing( spacingVector );
//resultImage->SetPicVolume( pic );
//mitkIpPicFree(pic);
/*unsigned int dimensions[2];
dimensions[0] = (unsigned int)extent[0]; dimensions[1] = (unsigned int)extent[1];
Vector3D spacingVector;
FillVector3D(spacingVector, mmPerPixel[0], mmPerPixel[1], 1.0);
mitk::Image::Pointer resultImage = this->GetOutput();
resultImage->Initialize(m_Reslicer->GetOutput());
resultImage->Initialize(inputImage->GetPixelType(), 2, dimensions);
resultImage->SetSpacing(spacingVector);
resultImage->SetSlice(m_Reslicer->GetOutput());*/
}
void mitk::ExtractDirectedPlaneImageFilter::GenerateOutputInformation()
{
Superclass::GenerateOutputInformation();
}
bool mitk::ExtractDirectedPlaneImageFilter
::CalculateClippedPlaneBounds( const Geometry3D *boundingGeometry,
const PlaneGeometry *planeGeometry, vtkFloatingPointType *bounds )
{
// Clip the plane with the bounding geometry. To do so, the corner points
// of the bounding box are transformed by the inverse transformation
// matrix, and the transformed bounding box edges derived therefrom are
// clipped with the plane z=0. The resulting min/max values are taken as
// bounds for the image reslicer.
const BoundingBox *boundingBox = boundingGeometry->GetBoundingBox();
BoundingBox::PointType bbMin = boundingBox->GetMinimum();
BoundingBox::PointType bbMax = boundingBox->GetMaximum();
vtkPoints *points = vtkPoints::New();
if(boundingGeometry->GetImageGeometry())
{
points->InsertPoint( 0, bbMin[0]-0.5, bbMin[1]-0.5, bbMin[2]-0.5 );
points->InsertPoint( 1, bbMin[0]-0.5, bbMin[1]-0.5, bbMax[2]-0.5 );
points->InsertPoint( 2, bbMin[0]-0.5, bbMax[1]-0.5, bbMax[2]-0.5 );
points->InsertPoint( 3, bbMin[0]-0.5, bbMax[1]-0.5, bbMin[2]-0.5 );
points->InsertPoint( 4, bbMax[0]-0.5, bbMin[1]-0.5, bbMin[2]-0.5 );
points->InsertPoint( 5, bbMax[0]-0.5, bbMin[1]-0.5, bbMax[2]-0.5 );
points->InsertPoint( 6, bbMax[0]-0.5, bbMax[1]-0.5, bbMax[2]-0.5 );
points->InsertPoint( 7, bbMax[0]-0.5, bbMax[1]-0.5, bbMin[2]-0.5 );
}
else
{
points->InsertPoint( 0, bbMin[0], bbMin[1], bbMin[2] );
points->InsertPoint( 1, bbMin[0], bbMin[1], bbMax[2] );
points->InsertPoint( 2, bbMin[0], bbMax[1], bbMax[2] );
points->InsertPoint( 3, bbMin[0], bbMax[1], bbMin[2] );
points->InsertPoint( 4, bbMax[0], bbMin[1], bbMin[2] );
points->InsertPoint( 5, bbMax[0], bbMin[1], bbMax[2] );
points->InsertPoint( 6, bbMax[0], bbMax[1], bbMax[2] );
points->InsertPoint( 7, bbMax[0], bbMax[1], bbMin[2] );
}
vtkPoints *newPoints = vtkPoints::New();
vtkTransform *transform = vtkTransform::New();
transform->Identity();
transform->Concatenate(
planeGeometry->GetVtkTransform()->GetLinearInverse()
);
transform->Concatenate( boundingGeometry->GetVtkTransform() );
transform->TransformPoints( points, newPoints );
transform->Delete();
bounds[0] = bounds[2] = 10000000.0;
bounds[1] = bounds[3] = -10000000.0;
bounds[4] = bounds[5] = 0.0;
this->LineIntersectZero( newPoints, 0, 1, bounds );
this->LineIntersectZero( newPoints, 1, 2, bounds );
this->LineIntersectZero( newPoints, 2, 3, bounds );
this->LineIntersectZero( newPoints, 3, 0, bounds );
this->LineIntersectZero( newPoints, 0, 4, bounds );
this->LineIntersectZero( newPoints, 1, 5, bounds );
this->LineIntersectZero( newPoints, 2, 6, bounds );
this->LineIntersectZero( newPoints, 3, 7, bounds );
this->LineIntersectZero( newPoints, 4, 5, bounds );
this->LineIntersectZero( newPoints, 5, 6, bounds );
this->LineIntersectZero( newPoints, 6, 7, bounds );
this->LineIntersectZero( newPoints, 7, 4, bounds );
// clean up vtk data
points->Delete();
newPoints->Delete();
if ( (bounds[0] > 9999999.0) || (bounds[2] > 9999999.0)
|| (bounds[1] < -9999999.0) || (bounds[3] < -9999999.0) )
{
return false;
}
else
{
// The resulting bounds must be adjusted by the plane spacing, since we
// we have so far dealt with index coordinates
const float *planeSpacing = planeGeometry->GetFloatSpacing();
bounds[0] *= planeSpacing[0];
bounds[1] *= planeSpacing[0];
bounds[2] *= planeSpacing[1];
bounds[3] *= planeSpacing[1];
bounds[4] *= planeSpacing[2];
bounds[5] *= planeSpacing[2];
return true;
}
}
bool mitk::ExtractDirectedPlaneImageFilter
::LineIntersectZero( vtkPoints *points, int p1, int p2,
vtkFloatingPointType *bounds )
{
vtkFloatingPointType point1[3];
vtkFloatingPointType point2[3];
points->GetPoint( p1, point1 );
points->GetPoint( p2, point2 );
if ( (point1[2] * point2[2] <= 0.0) && (point1[2] != point2[2]) )
{
double x, y;
x = ( point1[0] * point2[2] - point1[2] * point2[0] ) / ( point2[2] - point1[2] );
y = ( point1[1] * point2[2] - point1[2] * point2[1] ) / ( point2[2] - point1[2] );
if ( x < bounds[0] ) { bounds[0] = x; }
if ( x > bounds[1] ) { bounds[1] = x; }
if ( y < bounds[2] ) { bounds[2] = y; }
if ( y > bounds[3] ) { bounds[3] = y; }
bounds[4] = bounds[5] = 0.0;
return true;
}
return false;
}
diff --git a/Modules/MitkExt/CMakeLists.txt b/Modules/MitkExt/CMakeLists.txt
index 6a6a06c49d..d646f62a0e 100644
--- a/Modules/MitkExt/CMakeLists.txt
+++ b/Modules/MitkExt/CMakeLists.txt
@@ -1,28 +1,29 @@
#if(WIN32)
# option(MITK_USE_TD_MOUSE "Enable support for 3D Connexion SpaceNavigator" OFF)
#endif(WIN32)
configure_file(${PROJECT_SOURCE_DIR}/CMake/ToolExtensionITKFactory.cpp.in ${PROJECT_BINARY_DIR}/ToolExtensionITKFactory.cpp.in COPYONLY)
configure_file(${PROJECT_SOURCE_DIR}/CMake/ToolExtensionITKFactoryLoader.cpp.in ${PROJECT_BINARY_DIR}/ToolExtensionITKFactoryLoader.cpp.in COPYONLY)
configure_file(${PROJECT_SOURCE_DIR}/CMake/ToolGUIExtensionITKFactory.cpp.in ${PROJECT_BINARY_DIR}/ToolGUIExtensionITKFactory.cpp.in COPYONLY)
MITK_CREATE_MODULE( MitkExt
INCLUDE_DIRS Algorithms Controllers DataManagement Interactions IO Rendering
DEPENDS Mitk LegacyAdaptors IpPicSupport ipSegmentation mitkIpFunc PlanarFigure ImageStatistics
- DEPENDS_INTERNAL pic2vtk
)
# this is needed for libraries which link to mitkCoreExt and need
# symbols from explicitly instantiated templates like
# mitk::UnstructuredGridVtkWriter which is referenced in
# mitk::UnstructuredGridVtkWriterTest in the MitkExtTestDriver executable.
if(MINGW)
get_target_property(_mitkCoreExt_MINGW_linkflags mitkCoreExt LINK_FLAGS)
if(NOT _mitkCoreExt_MINGW_linkflags)
set(_mitkCoreExt_MINGW_linkflags "")
endif(NOT _mitkCoreExt_MINGW_linkflags)
set_target_properties(mitkCoreExt PROPERTIES LINK_FLAGS "${_mitkCoreExt_MINGW_linkflags} -Wl,--export-all-symbols")
endif(MINGW)
-add_subdirectory(Testing)
+if(BUILD_TESTING)
+ add_subdirectory(Testing)
+endif()
diff --git a/Modules/MitkExt/DataManagement/mitkVecmathHelper.h b/Modules/MitkExt/DataManagement/mitkVecmathHelper.h
deleted file mode 100644
index 9ba502e370..0000000000
--- a/Modules/MitkExt/DataManagement/mitkVecmathHelper.h
+++ /dev/null
@@ -1,100 +0,0 @@
-/*===================================================================
-
-The Medical Imaging Interaction Toolkit (MITK)
-
-Copyright (c) German Cancer Research Center,
-Division of Medical and Biological Informatics.
-All rights reserved.
-
-This software is distributed WITHOUT ANY WARRANTY; without
-even the implied warranty of MERCHANTABILITY or FITNESS FOR
-A PARTICULAR PURPOSE.
-
-See LICENSE.txt or http://www.mitk.org for details.
-
-===================================================================*/
-
-
-#ifndef MITKVECHELPER_H_HEADER_INCLUDED_C1EBD0AD
-#define MITKVECHELPER_H_HEADER_INCLUDED_C1EBD0AD
-
-#include "mitkVector.h"
-#include "vecmath.h"
-
-namespace mitk {
-
-//itk vs. vecmath conversion
-template
- inline void vm2itk(const Point3& p, Point3D& a)
-{
- a[0]=p.x;
- a[1]=p.y;
- a[2]=p.z;
-}
-
-template
- inline void itk2vm(const Point3D& a, Point3 & p)
-{
- p.set(a[0], a[1], a[2]);
-}
-
-template
- inline void vm2itk(const Vector3& p, Vector3D& a)
-{
- a[0]=p.x;
- a[1]=p.y;
- a[2]=p.z;
-}
-
-template
- inline void itk2vm(const Vector3D& a, Vector3 & p)
-{
- p.set(a[0], a[1], a[2]);
-}
-
-template
- inline void vm2itk(const Vector3& p, VnlVector& a)
-{
- a[0]=p.x;
- a[1]=p.y;
- a[2]=p.z;
-}
-
-template
- inline void itk2vm(const VnlVector& a, Vector3 & p)
-{
- p.set(a[0], a[1], a[2]);
-}
-
-template
- inline void vtk2vm(const Tin a[3], Vector3 & p)
-{
- p.set(a[0], a[1], a[2]);
-}
-
-template
- inline void vm2vtk(const Vector3 & p, Tout a[3])
-{
- a[0]=p.x;
- a[1]=p.y;
- a[2]=p.z;
-}
-
-template
- inline void vtk2vm(const Tin a[3], Point3 & p)
-{
- p.set(a[0], a[1], a[2]);
-}
-
-template
- inline void vm2vtk(const Point3 & p, Tout a[3])
-{
- a[0]=p.x;
- a[1]=p.y;
- a[2]=p.z;
-}
-
-} // namespace mitk
-
-
-#endif /* MITKVECHELPER */
diff --git a/Modules/MitkExt/Testing/CMakeLists.txt b/Modules/MitkExt/Testing/CMakeLists.txt
index 9874b913ef..014497799f 100644
--- a/Modules/MitkExt/Testing/CMakeLists.txt
+++ b/Modules/MitkExt/Testing/CMakeLists.txt
@@ -1,8 +1,6 @@
MITK_CREATE_MODULE_TESTS(EXTRA_DRIVER_INIT "RegisterCoreExtObjectFactory();;"
EXTRA_DRIVER_INCLUDE "mitkCoreExtObjectFactory.h")
-if(BUILD_TESTING AND MODULE_IS_ENABLED)
mitkAddCustomModuleTest(mitkLabeledImageToSurfaceFilterTest_BinaryBall mitkLabeledImageToSurfaceFilterTest ${MITK_DATA_DIR}/BallBinary30x30x30.pic.gz)
mitkAddCustomModuleTest(mitkImageToSurfaceFilterTest_BinaryBall mitkImageToSurfaceFilterTest ${MITK_DATA_DIR}/BallBinary30x30x30.nrrd)
-endif()
diff --git a/Utilities/CMakeLists.txt b/Utilities/CMakeLists.txt
index 8da20aafcb..6959f35dc6 100644
--- a/Utilities/CMakeLists.txt
+++ b/Utilities/CMakeLists.txt
@@ -1,45 +1,43 @@
SUPPRESS_ALL_WARNINGS()
# most stuff of these uses itk_zlib.h (via mitkIpPic.h)
find_package(ITK)
include(${ITK_USE_FILE})
# some legacy util files include in the old style with prefixed directory,
# like #include
include_directories(.)
subdirs(
ipPic
ipFunc
ipSegmentation
- pic2vtk
tinyxml
Poco
qwt
qxt
mbilog
glew
- vecmath
qtsingleapplication
KWStyle
)
# mbilog is independent of mitk, and cant use mitk macros
# configuring happens through mbilog/mbilogConfig.cmake.in
set(mbilog_INCLUDE_DIRS "${CMAKE_CURRENT_SOURCE_DIR}/mbilog" "${CMAKE_CURRENT_BINARY_DIR}/mbilog")
set(mbilog_CONFIG_FILE "${PROJECT_BINARY_DIR}/${MODULES_CONF_DIRNAME}/mbilogConfig.cmake" CACHE INTERNAL "Path to module config" FORCE)
configure_file("${CMAKE_CURRENT_SOURCE_DIR}/mbilog/mbilogConfig.cmake.in" "${mbilog_CONFIG_FILE}")
set(Poco_INCLUDE_DIR
${CMAKE_CURRENT_SOURCE_DIR}/Poco
CACHE PATH
"top-level directory containing the poco include directories. E.g /usr/local/include/ or c:\\poco\\include\\poco-1.3.2"
)
set(Poco_LIBRARY_DIR
${CMAKE_LIBRARY_OUTPUT_DIRECTORY}
CACHE PATH
"top-level directory containing the poco libraries."
)
diff --git a/Utilities/pic2vtk/CMakeLists.txt b/Utilities/pic2vtk/CMakeLists.txt
deleted file mode 100644
index a86e67f69c..0000000000
--- a/Utilities/pic2vtk/CMakeLists.txt
+++ /dev/null
@@ -1,11 +0,0 @@
-find_package(VTK)
-include(${VTK_USE_FILE})
-
-include_directories(.. ../ipPic)
-add_library(pic2vtk ${MITK_WIN32_FORCE_STATIC} pic2vtk.cpp)
-target_link_libraries(pic2vtk mitkIpPic vtkIO)
-
-MITK_CREATE_MODULE_CONF(pic2vtk
- DEPENDS mitkIpPic
-)
-
diff --git a/Utilities/pic2vtk/pic2vtk.cpp b/Utilities/pic2vtk/pic2vtk.cpp
deleted file mode 100644
index ae87b61efb..0000000000
--- a/Utilities/pic2vtk/pic2vtk.cpp
+++ /dev/null
@@ -1,1355 +0,0 @@
-#include
-#include
-#include
-#include
-#include
-#include
-
-/**
- * konvertiert ein vtkImageReader in ein pic-Image
- */
-mitkIpPicDescriptor* Pic2vtk::convert( vtkImageData* vtkImage ) {
-
- if ( vtkImage == NULL )
- return NULL;
-
- mitkIpPicDescriptor* pic = mitkIpPicNew();
-
- if ( pic == NULL )
- return NULL;
-
- int dim[3];
- vtkImage->GetDimensions(dim);
-
- if ( dim[2] > 1 ) {
- pic->dim = 3;
- } else if( dim[1] > 1 ) {
- pic->dim = 2;
- } else if ( dim[0] > 1 ) {
- pic->dim = 1;
- } else {
- return NULL;
- }
-
- pic->n[0] = dim[0];
- pic->n[1] = dim[1];
- pic->n[2] = dim[2];
-
- register unsigned long size = dim[0] * dim[1] * dim[2] * vtkImage->GetNumberOfScalarComponents();
-
- switch ( vtkImage->GetScalarType () ) {
-
- case VTK_BIT: {
-
- pic->type = mitkIpPicInt;
- pic->bpe = 8;
- unsigned int vtkSize = size>>3;
-
- if (vtkSize%8)
- vtkSize++;
-
- register char *s = (char*) vtkImage->GetScalarPointer();
- register char *a = (char*) malloc(sizeof(char)* size);
- if(a==NULL)
- {
- mitkIpPicFree( pic );
- return NULL;
- }
- pic->data = a;
-
- for ( register unsigned int i = 0; i < vtkSize; i++ ) {
-
- for ( int k=0; k < 8; k++ )
- *a++ = 0x80 & (*s<type = mitkIpPicInt;
- pic->bpe = 8*vtkImage->GetNumberOfScalarComponents();
-
- register char *s = (char*) vtkImage->GetScalarPointer();
- register char *a = (char*) malloc(sizeof(char)* size);
- if(a==NULL)
- {
- mitkIpPicFree( pic );
- return NULL;
- }
- pic->data = a;
-
- for ( unsigned long i = 0; i < size; i++ )
- *a++ = *s++;
-
- break;
- }
- case VTK_UNSIGNED_CHAR: {
-
- pic->type = mitkIpPicUInt;
- pic->bpe = 8*vtkImage->GetNumberOfScalarComponents();
-
- register unsigned char *s = (unsigned char*) vtkImage->GetScalarPointer();
- register unsigned char *a = (unsigned char*) malloc(sizeof(unsigned char)* size);
- if(a==NULL)
- {
- mitkIpPicFree( pic );
- return NULL;
- }
- pic->data = a;
-
- for ( unsigned long i = 0; i < size; i++ )
- *a++ = *s++;
-
- break;
- }
- case VTK_SHORT: {
-
- pic->type = mitkIpPicInt;
- pic->bpe = 16;
-
- register short *s = (short*) vtkImage->GetScalarPointer();
- register short *a = (short*) malloc(sizeof(short)* size);
- if(a==NULL)
- {
- mitkIpPicFree( pic );
- return NULL;
- }
- pic->data = a;
-
- for ( unsigned long i = 0; i < size; i++ )
- *a++ = *s++;
-
- break;
- }
- case VTK_UNSIGNED_SHORT: {
-
- pic->type = mitkIpPicUInt;
- pic->bpe = 16;
-
- register unsigned short *s = (unsigned short*) vtkImage->GetScalarPointer();
- register unsigned short *a = (unsigned short*) malloc(sizeof(unsigned short)* size);
- if(a==NULL)
- {
- mitkIpPicFree( pic );
- return NULL;
- }
- pic->data = a;
-
-
- for ( unsigned long i = 0; i < size; i++ )
- *a++ = *s++;
-
- break;
- }
- case VTK_INT: {
-
- pic->type = mitkIpPicInt;
- pic->bpe = 32;
-
- register int *s = (int*) vtkImage->GetScalarPointer();
- register int *a = (int*) malloc(sizeof(int)* size);
- if(a==NULL)
- {
- mitkIpPicFree( pic );
- return NULL;
- }
- pic->data = a;
-
- for ( unsigned long i = 0; i < size; i++ )
- *a++ = *s++;
-
- break;
- }
- case VTK_UNSIGNED_INT: {
-
- pic->type = mitkIpPicUInt;
- pic->bpe = 32;
-
- register unsigned int *s = (unsigned int*) vtkImage->GetScalarPointer();
- register unsigned int *a = (unsigned int*) malloc(sizeof(unsigned int)* size);
- if(a==NULL)
- {
- mitkIpPicFree( pic );
- return NULL;
- }
- pic->data = a;
-
- for ( unsigned long i = 0; i < size; i++ )
- *a++ = *s++;
-
- break;
- }
- case VTK_LONG: {
-
- pic->type = mitkIpPicInt;
- pic->bpe = 64;
-
- register long *s = (long*) vtkImage->GetScalarPointer();
- register long *a = (long*) malloc(sizeof(long)* size);
- if(a==NULL)
- {
- mitkIpPicFree( pic );
- return NULL;
- }
- pic->data = a;
-
- for ( unsigned long i = 0; i < size; i++ )
- *a++ = *s++;
-
- break;
- }
- case VTK_UNSIGNED_LONG: {
-
- pic->type = mitkIpPicUInt;
- pic->bpe = 64;
-
- register unsigned long *s = (unsigned long*) vtkImage->GetScalarPointer();
- register unsigned long *a = (unsigned long*) malloc(sizeof(unsigned long)* size);
- if(a==NULL)
- {
- mitkIpPicFree( pic );
- return NULL;
- }
- pic->data = a;
-
- for ( unsigned long i = 0; i < size; i++ )
- *a++ = *s++;
-
- break;
- }
- case VTK_FLOAT: {
-
- pic->type = mitkIpPicFloat;
- pic->bpe = 32;
-
- register float *s = (float*) vtkImage->GetScalarPointer();
- register float *a = (float*) malloc(sizeof(float)* size);
- if(a==NULL)
- {
- mitkIpPicFree( pic );
- return NULL;
- }
- pic->data = a;
-
- for ( unsigned long i = 0; i < size; i++ )
- *a++ = *s++;
-
- break;
- }
- case VTK_DOUBLE: {
-
- pic->type = mitkIpPicFloat;
- pic->bpe = 64;
-
- register double *s = (double*) vtkImage->GetScalarPointer();
- register double *a = (double*) malloc(sizeof(double)* size);
- if(a==NULL)
- {
- mitkIpPicFree( pic );
- return NULL;
- }
- pic->data = a;
-
-
- for ( unsigned long i = 0; i < size; i++ )
- *a++ = *s++;
-
- break;
- }
- default:
- mitkIpPicFree( pic );
- return NULL;
- }
-
- return pic;
-}
-
-
-
-
-/**
- * konvertiert ein vektorwertiges vtkImageData in ein vector pic-Image
- */
-mitkIpPicDescriptor* Pic2vtk::convertVectorImage( vtkImageData* vtkImage ) {
-
- std::cout << "Pic2vtk::convertVectorImage()... converting vector vtkImage to vector pic image" << std::endl;
-
- if ( vtkImage == NULL )
- return NULL;
-
- std::cout << " vtk dimension: " << vtkImage->GetDataDimension() << std::endl;
- std::cout << " vtk vector dim = " << vtkImage->GetNumberOfScalarComponents() << std::endl;
-
- mitkIpPicDescriptor* pic = mitkIpPicNew();
-
- if ( pic == NULL )
- return NULL;
-
-
- int dim[3];
- vtkImage->GetDimensions(dim);
-
- unsigned int vectorDim = vtkImage->GetNumberOfScalarComponents();
-
- unsigned long size = 0;
- unsigned long volumeSize = 0;
-
- if ( dim[2] > 1 ) {
- pic->dim = 3 + 1;
-
- pic->n[0] = dim[0];
- pic->n[1] = dim[1];
- pic->n[2] = dim[2];
- pic->n[3] = vectorDim;
-
- volumeSize = dim[0] * dim[1] * dim[2];
- size = volumeSize * vectorDim;
-
-
- } else if( dim[1] > 1 ) {
- pic->dim = 2 + 1;
-
- pic->n[0] = dim[0];
- pic->n[1] = dim[1];
- pic->n[2] = vectorDim;
-
- volumeSize = dim[0] * dim[1];
- size = volumeSize * vectorDim;
-
-
- } else if ( dim[1] > 1 ) {
- pic->dim = 1 + 1;
-
- pic->n[0] = dim[0];
- pic->n[1] = vectorDim;
-
- volumeSize = dim[0];
- size = volumeSize * vectorDim;
-
- }
-
-
-
- switch ( vtkImage->GetScalarType () ) {
-
- case VTK_BIT: {
-
-
- std::cout << "WARNING: VTK_BIT vector images not supported yet ... " << std::endl;
-
-// pic->type = mitkIpPicInt;
-// pic->bpe = 8;
-// unsigned int vtkSize = size>>3;
-//
-// if (vtkSize%8)
-// vtkSize++;
-//
-// register unsigned char *s = (unsigned char*) vtkImage->GetScalarPointer();
-// register unsigned char *a = new unsigned char[size];
-// pic->data = a;
-//
-// for ( register unsigned int i = 0; i < vtkSize; i++ ) {
-//
-// for ( int k=0; k < 8; k++ )
-// *a++ = 0x80 & (*s<type = mitkIpPicInt;
- pic->bpe = 8;
-
- register char *s = (char*) vtkImage->GetScalarPointer();
- register char *a = (char*) malloc(sizeof(char)* size);;
- pic->data = a;
-
-#define COPYVECTORDATAVTK2PIC \
- for ( unsigned long i = 0; i < volumeSize; i++ ) \
- { \
- for ( unsigned int j = 0; jtype = mitkIpPicUInt;
- pic->bpe = 8;
-
- register unsigned char *s = (unsigned char*) vtkImage->GetScalarPointer();
- register unsigned char *a = (unsigned char*) malloc(sizeof(unsigned char)* size);;
- pic->data = a;
-
- COPYVECTORDATAVTK2PIC
-
- break;
- }
- case VTK_SHORT: {
-
- pic->type = mitkIpPicInt;
- pic->bpe = 16;
-
- register short *s = (short*) vtkImage->GetScalarPointer();
- register short *a = (short*) malloc(sizeof(short)* size);
- pic->data = a;
-
- COPYVECTORDATAVTK2PIC
-
- break;
- }
- case VTK_UNSIGNED_SHORT: {
-
- pic->type = mitkIpPicUInt;
- pic->bpe = 16;
-
- register unsigned short *s = (unsigned short*) vtkImage->GetScalarPointer();
- register unsigned short *a = (unsigned short*) malloc(sizeof(unsigned short)* size);
- pic->data = a;
-
-
- COPYVECTORDATAVTK2PIC
-
- break;
- }
- case VTK_INT: {
-
- pic->type = mitkIpPicInt;
- pic->bpe = 32;
-
- register int *s = (int*) vtkImage->GetScalarPointer();
- register int *a = (int*) malloc(sizeof(int)* size);
- pic->data = a;
-
- COPYVECTORDATAVTK2PIC
-
- break;
- }
- case VTK_UNSIGNED_INT: {
-
- pic->type = mitkIpPicUInt;
- pic->bpe = 32;
-
- register unsigned int *s = (unsigned int*) vtkImage->GetScalarPointer();
- register unsigned int *a = (unsigned int*) malloc(sizeof(unsigned int)* size);
- pic->data = a;
-
- COPYVECTORDATAVTK2PIC
-
- break;
- }
- case VTK_LONG: {
-
- pic->type = mitkIpPicInt;
- pic->bpe = 64;
-
- register long *s = (long*) vtkImage->GetScalarPointer();
- register long *a = (long*) malloc(sizeof(long)* size);
- pic->data = a;
-
- COPYVECTORDATAVTK2PIC
-
- break;
- }
- case VTK_UNSIGNED_LONG: {
-
- pic->type = mitkIpPicUInt;
- pic->bpe = 64;
-
- register unsigned long *s = (unsigned long*) vtkImage->GetScalarPointer();
- register unsigned long *a = (unsigned long*) malloc(sizeof(unsigned long)* size);
- pic->data = a;
-
- COPYVECTORDATAVTK2PIC
-
- break;
- }
- case VTK_FLOAT: {
-
- pic->type = mitkIpPicFloat;
- pic->bpe = 32;
-
- register float *s = (float*) vtkImage->GetScalarPointer();
- register float *a = (float*) malloc(sizeof(float)* size);
- pic->data = a;
-
- COPYVECTORDATAVTK2PIC
-
- break;
- }
- case VTK_DOUBLE: {
-
- pic->type = mitkIpPicFloat;
- pic->bpe = 64;
-
- register double *s = (double*) vtkImage->GetScalarPointer();
- register double *a = (double*) malloc(sizeof(double)* size);
- pic->data = a;
-
- COPYVECTORDATAVTK2PIC
-
- break;
- }
- default:
- mitkIpPicFree( pic );
- return NULL;
- }
-
- // add tag tp result pic
- mitkIpPicTSV_t *tsv;
- tsv = (mitkIpPicTSV_t *) malloc( sizeof(mitkIpPicTSV_t) );
- strcpy( tsv->tag, "VectorValued" );
- tsv->type = mitkIpPicASCII;
- tsv->bpe = 8;
- tsv->dim = 1;
- tsv->value = strdup( "." );
- tsv->n[0] = strlen((char *) tsv->value);
- mitkIpPicAddTag( pic, tsv );
-
- return pic;
-}
-
-
-
-/**
- * konvertiert ein pic-Image in ein vtkImageReader
- */
-vtkImageData* Pic2vtk::convert( mitkIpPicDescriptor* pic ) {
-
- if ( pic == NULL )
- return NULL;
-
-
- vtkImageData *inData = vtkImageData::New();
-
- if ( inData == NULL )
- return NULL;
-
- unsigned long size = 0;
-
- if ( pic->dim == 1 ) {
- inData->SetDimensions( pic->n[0] -1, 1, 1);
- size = pic->n[0];
- inData->SetOrigin( ((float) pic->n[0]) / 2.0f, 0, 0 );
- } else if ( pic->dim == 2 ) {
- inData->SetDimensions( pic->n[0] , pic->n[1] , 1 );
- size = pic->n[0] * pic->n[1];
- inData->SetOrigin( ((float) pic->n[0]) / 2.0f, ((float) pic->n[1]) / 2.0f, 0 );
- } else if ( pic->dim >= 3 ) {
- inData->SetDimensions( pic->n[0], pic->n[1], pic->n[2] );
- size = pic->n[0] * pic->n[1] * pic->n[2];
- // Test
- //inData->SetOrigin( (float) pic->n[0] / 2.0f, (float) pic->n[1] / 2.0f, (float) pic->n[2] / 2.0f );
- inData->SetOrigin( 0, 0, 0 );
- } else {
- inData->Delete () ;
- return NULL;
- }
-
- inData->SetNumberOfScalarComponents(1);
-
-
- if ( ( pic->type == mitkIpPicInt || pic->type == mitkIpPicUInt ) && pic->bpe == 1 ) {
- inData->SetScalarType( VTK_BIT );
- inData->AllocateScalars();
- size = size>>3;
- register unsigned char* s = (unsigned char*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = *s++;
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 8 ) {
- inData->SetScalarType( VTK_CHAR );
- inData->AllocateScalars();
-
- register char* s = (char*) pic->data;
- register char* a = (char*) inData->GetScalarPointer();
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = *s++;
-
- } else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ) {
- inData->SetScalarType( VTK_UNSIGNED_CHAR );
- inData->AllocateScalars();
-
- register unsigned char* s = (unsigned char*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = *s++;
-
-
- } else if ( pic->type == mitkIpPicUInt && pic->bpe == 24 ) {
- inData->SetNumberOfScalarComponents(3);
- inData->SetScalarType( VTK_UNSIGNED_CHAR );
- inData->AllocateScalars();
-
- register unsigned char* s = (unsigned char*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
-
- for ( register unsigned long i = 0; i < size*3 ; i++ )
- *a++ = *s++;
-
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ) {
- inData->SetScalarType( VTK_SHORT );
- inData->AllocateScalars();
-
- register short* s = (short*) pic->data;
- register short* a = (short*) inData->GetScalarPointer();
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = *s++;
-
- } else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ) {
- inData->SetScalarType( VTK_UNSIGNED_SHORT );
- inData->AllocateScalars();
-
- register unsigned short* s = (unsigned short*) pic->data;
- register unsigned short* a = (unsigned short*) inData->GetScalarPointer();
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = *s++;
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ) {
- inData->SetScalarType( VTK_INT );
- inData->AllocateScalars();
-
- register int* s = (int*) pic->data;
- register int* a = (int*) inData->GetScalarPointer();
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = *s++;
-
- } else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ) {
- inData->SetScalarType( VTK_UNSIGNED_INT );
- inData->AllocateScalars();
-
- register unsigned int* s = (unsigned int*) pic->data;
- register unsigned int* a = (unsigned int*) inData->GetScalarPointer();
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = *s++;
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ) {
- inData->SetScalarType( VTK_LONG );
- inData->AllocateScalars();
-
- register long* s = (long*) pic->data;
- register long* a = (long*) inData->GetScalarPointer();
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = *s++;
-
- } else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ) {
- inData->SetScalarType( VTK_UNSIGNED_LONG );
- inData->AllocateScalars();
-
- register unsigned long* s = (unsigned long*) pic->data;
- register unsigned long* a = (unsigned long*) inData->GetScalarPointer();
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = *s++;
-
- } else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ) {
- inData->SetScalarType( VTK_FLOAT );
- inData->AllocateScalars();
-
- register float* s = (float*) pic->data;
- register float* a = (float*) inData->GetScalarPointer();
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = *s++;
-
- } else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ) {
- inData->SetScalarType( VTK_DOUBLE );
- inData->AllocateScalars();
-
- register double* s = (double*) pic->data;
- register double* a = (double*) inData->GetScalarPointer();
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = *s++;
-
- } else {
- inData->Delete();
- return NULL;
- }
-
- return inData;
-}
-
-
-/**
- * konvertiert ein vector pic-Image in ein vector vtkImageData
- */
-vtkImageData* Pic2vtk::convertVectorImage( mitkIpPicDescriptor* pic ) {
-
- std::cout << "Pic2vtk::convertVectorImage()... converting vector pic image to vector vtkImage " << std::endl;
-
- if ( pic == NULL )
- return NULL;
-
-
- vtkImageData *inData = vtkImageData::New();
-
- if ( inData == NULL )
- return NULL;
-
- unsigned long size = 0;
- unsigned long volumeSize = 0;
-
- int dim = pic->dim - 1;
- unsigned int vectorDim = pic->n[dim];
-
- std::cout << " pic dimension = " << dim << std::endl;
- std::cout << " pic vector dim = " << vectorDim << std::endl;
-
-
- if ( dim == 1 ) {
- inData->SetDimensions( pic->n[0] -1, 1, 1);
- volumeSize = pic->n[0];
- size = volumeSize * vectorDim;
- inData->SetOrigin( ((float) pic->n[0]) / 2.0f, 0, 0 );
- } else if ( dim == 2 ) {
- inData->SetDimensions( pic->n[0] , pic->n[1] , 1 );
- volumeSize = pic->n[0]* pic->n[1];
- size = volumeSize * vectorDim;
- //inData->SetOrigin( ((float) pic->n[0]) / 2.0f, ((float) pic->n[1]) / 2.0f, 0 );
- inData->SetOrigin( 0,0, 0 );
- } else if ( dim >= 3 ) {
- inData->SetDimensions( pic->n[0], pic->n[1], pic->n[2] );
- volumeSize = pic->n[0]* pic->n[1]* pic->n[2];
- size = volumeSize * vectorDim;
- inData->SetOrigin( 0, 0, 0 );
- } else {
- inData->Delete () ;
- return NULL;
- }
-
-// std::cout << " size = " << size << std::endl;
-// std::cout << " volumeSize = " << volumeSize << std::endl;
-
- //inData->SetNumberOfScalarComponents(vectorDim);
- inData->SetNumberOfScalarComponents(3);
-
- if ( ( pic->type == mitkIpPicInt || pic->type == mitkIpPicUInt ) && pic->bpe == 1 ) {
- inData->SetScalarType( VTK_BIT );
- inData->AllocateScalars();
- size = size>>3;
-
- std::cout << "WARNING: 1 bit vector not supported yet ..." << std::endl;
-// register unsigned char* s = (unsigned char*) pic->data;
-// register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
-//
-// for ( register unsigned long i = 0; i < size ; i++ )
-// for ( register unsigned int j = 0; jtype == mitkIpPicInt && pic->bpe == 8 ) {
- inData->SetScalarType( VTK_CHAR );
- inData->AllocateScalars();
-
- register char* s = (char*) pic->data;
- register char* a = (char*) inData->GetScalarPointer();
-
-#define COPYVECTORDATAPIC2VTK \
- for ( register unsigned long i = 0; i < volumeSize ; i++ ) \
- { \
- for ( register unsigned int j = 0; j<3; j++) \
- { \
- if (jtype == mitkIpPicUInt && pic->bpe == 8 ) {
- inData->SetScalarType( VTK_UNSIGNED_CHAR );
- inData->AllocateScalars();
-
- register unsigned char* s = (unsigned char*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
-
- COPYVECTORDATAPIC2VTK
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ) {
- inData->SetScalarType( VTK_SHORT );
- inData->AllocateScalars();
-
- register short* s = (short*) pic->data;
- register short* a = (short*) inData->GetScalarPointer();
-
- COPYVECTORDATAPIC2VTK
-
- } else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ) {
- inData->SetScalarType( VTK_UNSIGNED_SHORT );
- inData->AllocateScalars();
- std::cout << " memory = " << inData->GetActualMemorySize() << std::endl;
- fflush(stdout);
-
- register unsigned short* s = (unsigned short*) pic->data;
- register unsigned short* a = (unsigned short*) inData->GetScalarPointer();
-
- COPYVECTORDATAPIC2VTK
-
-
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ) {
- inData->SetScalarType( VTK_INT );
- inData->AllocateScalars();
-
- register int* s = (int*) pic->data;
- register int* a = (int*) inData->GetScalarPointer();
-
- COPYVECTORDATAPIC2VTK
-
- } else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ) {
- inData->SetScalarType( VTK_UNSIGNED_INT );
- inData->AllocateScalars();
-
- register unsigned int* s = (unsigned int*) pic->data;
- register unsigned int* a = (unsigned int*) inData->GetScalarPointer();
-
- COPYVECTORDATAPIC2VTK
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ) {
- inData->SetScalarType( VTK_LONG );
- inData->AllocateScalars();
-
- register long* s = (long*) pic->data;
- register long* a = (long*) inData->GetScalarPointer();
-
- COPYVECTORDATAPIC2VTK
-
- } else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ) {
- inData->SetScalarType( VTK_UNSIGNED_LONG );
- inData->AllocateScalars();
-
- register unsigned long* s = (unsigned long*) pic->data;
- register unsigned long* a = (unsigned long*) inData->GetScalarPointer();
-
- COPYVECTORDATAPIC2VTK
-
- } else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ) {
- inData->SetScalarType( VTK_FLOAT );
- inData->AllocateScalars();
-
- register float* s = (float*) pic->data;
- register float* a = (float*) inData->GetScalarPointer();
-
- COPYVECTORDATAPIC2VTK
- } else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ) {
- inData->SetScalarType( VTK_DOUBLE );
- inData->AllocateScalars();
-
- register double* s = (double*) pic->data;
- register double* a = (double*) inData->GetScalarPointer();
-
- COPYVECTORDATAPIC2VTK
-
- } else {
- inData->Delete();
- return NULL;
- }
-
-
- return inData;
-}
-
-/**
- * läd ein unkomprimiertes pic file
- */
-vtkImageData* Pic2vtk::loadImage( char* fileName, bool littleEndian ) {
-
- if ( fileName == NULL )
- return NULL;
-
- mitkIpPicDescriptor* pic = mitkIpPicGetHeader( fileName, NULL );
-
- if ( pic == NULL )
- return NULL;
-
- if ( pic->info->pixel_start_in_file == 0 ) {
- // komprimierte Date
-
- mitkIpPicFree( pic );
- pic = NULL;
-
- pic = mitkIpPicGet( fileName, NULL );
-
- if ( pic == NULL )
- return NULL;
-
- vtkImageData* vtkImage = convert( pic );
- mitkIpPicFree( pic );
- return vtkImage;
- }
-
- vtkImageReader *reader = vtkImageReader::New();
-
- if ( reader == NULL )
- return NULL;
-
- reader->ReleaseDataFlagOff();
-
- if ( littleEndian == true )
- reader->SetDataByteOrderToLittleEndian();
- else
- reader->SetDataByteOrderToBigEndian();
-
- if ( pic->dim == 1 ) {
- reader->SetFileDimensionality(1);
- reader->SetDataExtent ( 0, pic->n[0] -1, 0, 0, 0, 0);
- reader->SetDataOrigin( ((float) pic->n[0]) / 2.0f, 0, 0 );
- } else if ( pic->dim == 2 ) {
- reader->SetFileDimensionality(2);
- reader->SetDataExtent ( 0, pic->n[0] -1, 0, pic->n[1] -1, 0, 0);
- reader->SetDataOrigin( ((float) pic->n[0]) / 2.0f, ((float) pic->n[1]) / 2.0f, 0 );
- } else if ( pic->dim >= 3 ) {
- reader->SetFileDimensionality(3);
- reader->SetDataOrigin( (float) pic->n[0] / 2.0f, (float) pic->n[1] / 2.0f, (float) pic->n[2] / 2.0f );
- reader->SetDataExtent( 0, pic->n[0] - 1, 0, pic->n[1] - 1, 0, pic->n[2] - 1 );
- } else {
- reader->Delete () ;
- mitkIpPicFree( pic );
- return NULL;
- }
-
- // Datatype
- if ( ( pic->type == mitkIpPicInt || pic->type == mitkIpPicUInt ) && pic->bpe == 1 ) {
- reader->SetDataScalarType( VTK_BIT );
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 8 ) {
- reader->SetDataScalarType( VTK_CHAR );
-
- } else if ( pic->type == mitkIpPicUInt && pic->bpe == 8 ) {
- reader->SetDataScalarType( VTK_UNSIGNED_CHAR );
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ) {
- reader->SetDataScalarType( VTK_SHORT );
-
- } else if ( pic->type == mitkIpPicUInt && pic->bpe == 16 ) {
- reader->SetDataScalarType( VTK_UNSIGNED_SHORT );
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ) {
- reader->SetDataScalarType( VTK_INT );
-
- } else if ( pic->type == mitkIpPicUInt && pic->bpe == 32 ) {
- reader->SetDataScalarType( VTK_UNSIGNED_INT );
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ) {
- reader->SetDataScalarType( VTK_LONG );
-
- } else if ( pic->type == mitkIpPicUInt && pic->bpe == 64 ) {
- reader->SetDataScalarType( VTK_UNSIGNED_LONG );
-
- } else if ( pic->type == mitkIpPicFloat && pic->bpe == 32 ) {
- reader->SetDataScalarType( VTK_FLOAT );
-
- } else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ) {
- reader->SetDataScalarType( VTK_DOUBLE );
-
- } else {
- reader->Delete();
- mitkIpPicFree( pic );
- return NULL;
- }
-
- reader->SetDataMask(0xffff);
- reader->SetHeaderSize ( pic->info->pixel_start_in_file );
-
- reader->SetFileName( fileName );
- reader->UpdateWholeExtent();
- mitkIpPicFree( pic );
-
- vtkImageData* vtkImage = reader->GetOutput();
- reader->Delete();
- return vtkImage;
-}
-
-
-/**
- * konvertiert ein pic-Image in ein vtkImageReader
- * mask erwartet ein Bittmuster, das im Zielbild eingeblendet wird.
- * move gibt die Verschiebung an, mit der das Bitmuster im Zielbilt plaziert wird.
- */
-vtkImageData* Pic2vtk::convert( mitkIpPicDescriptor* pic, unsigned long mask, int move ) {
-
- if ( pic == NULL )
- return NULL;
-
- vtkImageData *inData = vtkImageData::New();
-
- if ( inData == NULL )
- return NULL;
-
- unsigned long size = 0;
-
- if ( pic->dim == 1 ) {
-
- inData->SetDimensions( pic->n[0] -1, 1, 1);
- size = pic->n[0];
- inData->SetOrigin( ((float) pic->n[0]) / 2.0f, 0, 0 );
- } else if ( pic->dim == 2 ) {
-
- inData->SetDimensions( pic->n[0] , pic->n[1] , 1 );
- size = pic->n[0] * pic->n[1];
- inData->SetOrigin( ((float) pic->n[0]) / 2.0f, ((float) pic->n[1]) / 2.0f, 0 );
- } else if ( pic->dim >= 3 ) {
-
- inData->SetDimensions( pic->n[0], pic->n[1], pic->n[2] );
- size = pic->n[0] * pic->n[1] * pic->n[2];
- inData->SetOrigin( 0, 0, 0 );
- } else {
-
- inData->Delete () ;
- return NULL;
- }
-
- inData->SetNumberOfScalarComponents(1);
-
-
- if ( ( pic->type == mitkIpPicInt || pic->type == mitkIpPicUInt ) && pic->bpe == 1 ) {
- inData->SetScalarType( VTK_BIT );
- inData->AllocateScalars();
-
- size = size>>3;
- register unsigned char* s = (unsigned char*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
- register unsigned char v;
-
- for ( register unsigned long i = 0; i < size ; i++ ) {
-
- v = 0;
-
- for ( int j = 0; j < 8; j++ )
- v |= (((mask & (*s++))>>move)<type == mitkIpPicInt && pic->bpe == 8 ) {
- inData->SetScalarType( VTK_BIT );
- inData->AllocateScalars();
-
- register char* s = (char*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
- register unsigned char v;
-
-
- for ( register unsigned long i = 0; i < size ; i++ ) {
-
- v = 0;
-
- for ( int j = 0; j < 8; j++ )
- v |= (((mask & (*s++))>>move)<type == mitkIpPicUInt && pic->bpe == 8 ) {
- inData->SetScalarType( VTK_BIT );
- inData->AllocateScalars();
-
- register unsigned char* s = (unsigned char*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
- register unsigned char v;
-
- for ( register unsigned long i = 0; i < size ; i++ ) {
-
- v = 0;
-
- for ( int j = 0; j < 8; j++ )
- v |= (((mask & (*s++))>>move)<type == mitkIpPicInt && pic->bpe == 16 ) {
- inData->SetScalarType( VTK_BIT );
- inData->AllocateScalars();
-
- register short* s = (short*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
- register unsigned char v;
-
- for ( register unsigned long i = 0; i < size ; i++ ) {
-
- v = 0;
-
- for ( int j = 0; j < 8; j++ )
- v |= (((mask & (*s++))>>move)<type == mitkIpPicUInt && pic->bpe == 16 ) {
- inData->SetScalarType( VTK_BIT );
- inData->AllocateScalars();
-
- register unsigned short* s = (unsigned short*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
- register unsigned char v;
-
- for ( register unsigned long i = 0; i < size ; i++ ) {
-
- v = 0;
-
- for ( int j = 0; j < 8; j++ )
- v |= (((mask & (*s++))>>move)<type == mitkIpPicInt && pic->bpe == 32 ) {
- inData->SetScalarType( VTK_BIT );
- inData->AllocateScalars();
-
- register int* s = (int*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
- register unsigned char v;
-
- for ( register unsigned long i = 0; i < size ; i++ ) {
-
- v = 0;
-
- for ( int j = 0; j < 8; j++ )
- v |= (((mask & (*s++))>>move)<type == mitkIpPicUInt && pic->bpe == 32 ) {
- inData->SetScalarType( VTK_BIT );
- inData->AllocateScalars();
-
- register unsigned int* s = (unsigned int*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
- register unsigned char v;
-
- for ( register unsigned long i = 0; i < size ; i++ ) {
-
- v = 0;
-
- for ( int j = 0; j < 8; j++ )
- v |= (((mask & (*s++))>>move)<type == mitkIpPicInt && pic->bpe == 64 ) {
- inData->SetScalarType( VTK_BIT );
- inData->AllocateScalars();
-
- register long* s = (long*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
- register unsigned char v;
-
- for ( register unsigned long i = 0; i < size ; i++ ) {
-
- v = 0;
-
- for ( int j = 0; j < 8; j++ )
- v |= (((mask & (*s++))>>move)<type == mitkIpPicUInt && pic->bpe == 64 ) {
- inData->SetScalarType( VTK_BIT );
- inData->AllocateScalars();
-
- register unsigned long* s = (unsigned long*) pic->data;
- register unsigned char* a = (unsigned char*) inData->GetScalarPointer();
- register unsigned char v;
-
- for ( register unsigned long i = 0; i < size ; i++ ) {
-
- v = 0;
-
- for ( int j = 0; j < 8; j++ )
- v |= (((mask & (*s++))>>move)<type == mitkIpPicFloat && pic->bpe == 32 ) {
-
- inData->Delete();
- return NULL;
-
- } else if ( pic->type == mitkIpPicFloat && pic->bpe == 64 ) {
-
- inData->Delete();
- return NULL;
-
- } else {
- inData->Delete();
- return NULL;
- }
-
- return inData;
-}
-
-/**
- *
- */
- mitkIpPicDescriptor* Pic2vtk::convertSigned2Unsigned( mitkIpPicDescriptor* pic, unsigned long* offset ) {
-
- if ( pic == NULL )
- return NULL;
-
- if ( pic->type == mitkIpPicUInt )
- return pic;
-
- mitkIpPicDescriptor* newPic = mitkIpPicCopyHeader( pic, NULL );
- const unsigned int size = _mitkIpPicElements( pic );
-
- if ( pic->type == mitkIpPicInt && pic->bpe == 8 ) {
-
- newPic->type = mitkIpPicUInt;
- newPic->data = new unsigned char[ size ];
-
- register char* s = (char*) pic->data;
- register unsigned char* a = (unsigned char*) newPic->data;
- register unsigned short localOffset = 2^7;
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = (unsigned char) ((*s++) + localOffset);
-
- if ( offset )
- *offset = localOffset;
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 16 ) {
-
- newPic->type = mitkIpPicUInt;
- newPic->data = new unsigned short[ size ];
-
- register short* s = (short*) pic->data;
- register unsigned short* a = (unsigned short*) newPic->data;
- register unsigned int localOffset = 1<<15;
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = (unsigned short) ((*s++) + localOffset);
-
- if ( offset )
- *offset = localOffset;
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 32 ) {
-
- newPic->type = mitkIpPicUInt;
- newPic->data = new unsigned int[ size ];
-
- register int* s = (int*) pic->data;
- register unsigned int* a = (unsigned int*) newPic->data;
- register unsigned long localOffset = 1<<31;
-
- for ( register unsigned long i = 0; i < size ; i++ )
- *a++ = (unsigned int)((*s++) + localOffset);
-
- if ( offset )
- *offset = localOffset;
-
- } else if ( pic->type == mitkIpPicInt && pic->bpe == 64 ) {
- assert(false);
- }
-
- return newPic;
- }
-
-
- /**
- *
- */
-
-vtkImageData* Pic2vtk::loadVtkImage( char* fileName ) {
-
- vtkStructuredPointsReader* reader = vtkStructuredPointsReader::New();
- // vtkDataReader* reader = vtkDataReader::New();
-
-
- reader->SetFileName( fileName );
- reader->Update();
-
- if ( reader->OpenVTKFile() == 0 )
- {
- std::cout << "something happend ..." << std::endl;
- return NULL;
- }
-
- // int test = reader->IsFileStructuredPoints(); /* \todo remove line! */
-
-
- //int a = reader->GetFileType(); /* \todo remove line! */
- //char * kk = reader->GetHeader(); /* \todo remove line! */
-
- vtkStructuredPoints* points = reader->GetOutput();
- std::cout << "dim: " << ((vtkImageData *)points)->GetDataDimension() << std::endl;
- std::cout << "size: " << ((vtkImageData *)points)->GetScalarSize() << std::endl;
- std::cout << "min: " << ((vtkImageData *)points)->GetScalarTypeMin () << std::endl;
- std::cout << "min: " << ((vtkImageData *)points)->GetScalarTypeMax () << std::endl;
- std::cout << "scalars: " << ((vtkImageData *)points)->GetNumberOfScalarComponents () << std::endl;
- ((vtkImageData *)points)->SetNumberOfScalarComponents (3);
- std::cout << "scalars: " << ((vtkImageData *)points)->GetNumberOfScalarComponents () << std::endl;
-
- int dims[3];
- ((vtkImageData *)points)->GetDimensions (dims);
- std::cout << "dim1 = " << dims[0] << " dims2 = " << dims[1] << " dims3 = " << dims[2] << std::endl;
- dims[2] = 2;
- ((vtkImageData *)points)->SetDimensions (dims);
- ((vtkImageData *)points)->GetDimensions (dims);
- std::cout << "dim1 = " << dims[0] << " dims2 = " << dims[1] << " dims3 = " << dims[2] << std::endl;
- std::cout << "dim: " << ((vtkImageData *)points)->GetDataDimension() << std::endl;
-
-
- int extent[6];
- ((vtkImageData *)points)->GetExtent (extent);
- std::cout << "e1 = " << extent[0] << " e2 = " << extent[1] << " e3 = " << extent[2] << std::endl;
- std::cout << "e4 = " << extent[3] << " e5 = " << extent[4] << " e6 = " << extent[5] << std::endl;
-
- ((vtkImageData *)points)->GetUpdateExtent (extent);
- std::cout << "e1 = " << extent[0] << " e2 = " << extent[1] << " e3 = " << extent[2] << std::endl;
- std::cout << "e4 = " << extent[3] << " e5 = " << extent[4] << " e6 = " << extent[5] << std::endl;
-
- ((vtkImageData *)points)->GetExtent (extent);
- ((vtkImageData *)points)->SetUpdateExtent (extent);
- std::cout << "e1 = " << extent[0] << " e2 = " << extent[1] << " e3 = " << extent[2] << std::endl;
- std::cout << "e4 = " << extent[3] << " e5 = " << extent[4] << " e6 = " << extent[5] << std::endl;
-
- ((vtkImageData *)points)->GetExtent (extent);
- ((vtkImageData *)points)->SetWholeExtent (extent);
- std::cout << "e1 = " << extent[0] << " e2 = " << extent[1] << " e3 = " << extent[2] << std::endl;
- std::cout << "e4 = " << extent[3] << " e5 = " << extent[4] << " e6 = " << extent[5] << std::endl;
-
- vtkFloatingPointType s[3];
-
- ((vtkImageData *)points)->GetSpacing (s);
- std::cout << "s1 = " << s[0] << " s2 = " << s[1] << " s3 = " << s[2] << std::endl;
-
- ((vtkDataObject*)points)->Update();
-
-
- return (vtkImageData *)points;
- //return NULL;
- }
-
diff --git a/Utilities/pic2vtk/pic2vtk.h b/Utilities/pic2vtk/pic2vtk.h
deleted file mode 100644
index e2b9bbde34..0000000000
--- a/Utilities/pic2vtk/pic2vtk.h
+++ /dev/null
@@ -1,54 +0,0 @@
-#ifndef Pic2vtk_h
-#define Pic2vtk_h
-
-#include
-#include
-
-/** @file
- * DKFZ - Heidelberg
- *
- * Module Name: Pic2vtk
- *
- * Module Klasse: ADT
- *
- * Beschreibung:
- *
- *
- * Exportierte Klassen und Funktionen:
- *
- *
- * Importierte Klassen und Funktionen:
- *
- *
- * @warning Dieses Modul wurde noch nicht abgenommen!
- *
- * @version 1.0
- *
- * @date 03.07.2000
- *
- * @author Marcus Vetter
- *
- */
-
-class Pic2vtk {
-
-private:
-
- // verhindert das erzeugen eines Objects.
- Pic2vtk() {};
-
-public:
-
- static vtkImageData* loadVtkImage( char* fileName );
- static vtkImageData* loadImage( char* fileName, bool littleEndian = true );
- static vtkImageData* convert( mitkIpPicDescriptor* pic );
- static vtkImageData* convert( mitkIpPicDescriptor* pic, unsigned long mask, int move );
- static mitkIpPicDescriptor* convert( vtkImageData* vtkImage );
- static mitkIpPicDescriptor* convertSigned2Unsigned( mitkIpPicDescriptor*, unsigned long* offset = NULL );
-
- static vtkImageData* convertVectorImage( mitkIpPicDescriptor* pic );
- static mitkIpPicDescriptor* convertVectorImage( vtkImageData* vtkImage );
-
-};
-
-#endif // Pic2vtk_h
diff --git a/Utilities/vecmath/AxisAngle4.h b/Utilities/vecmath/AxisAngle4.h
deleted file mode 100644
index ed556a1e3e..0000000000
--- a/Utilities/vecmath/AxisAngle4.h
+++ /dev/null
@@ -1,104 +0,0 @@
-/*
- Copyright (C) 1997,1998,1999
- Kenji Hiranabe, Eiwa System Management, Inc.
-
- This program is free software.
- Implemented by Kenji Hiranabe(hiranabe@esm.co.jp),
- conforming to the Java(TM) 3D API specification by Sun Microsystems.
-
- Permission to use, copy, modify, distribute and sell this software
- and its documentation for any purpose is hereby granted without fee,
- provided that the above copyright notice appear in all copies and
- that both that copyright notice and this permission notice appear
- in supporting documentation. Kenji Hiranabe and Eiwa System Management,Inc.
- makes no representations about the suitability of this software for any
- purpose. It is provided "AS IS" with NO WARRANTY.
-*/
-#ifndef AXISANGLE4_H
-#define AXISANGLE4_H
-
-#include "VmUtil.h"
-#include "AxisAngle4_.h"
-#include "Quat4_.h"
-
-VM_BEGIN_NS
-
-template
-void AxisAngle4::set(const Quat4& q1) {
- setFromQuat(q1.x, q1.y, q1.z, q1.w);
-}
-
-template
-void AxisAngle4::setFromMat(T m00, T m01, T m02,
- T m10, T m11, T m12,
- T m20, T m21, T m22) {
- // assuming M is normalized.
- T cos = (m00 + m11 + m22 - 1.0)*0.5;
- x = m21 - m12;
- y = m02 - m20;
- z = m10 - m01;
- T sin = 0.5*VmUtil::sqrt(x*x + y*y + z*z);
- angle = VmUtil::atan2(sin, cos);
-
- // no need to normalize
- // x /= n;
- // y /= n;
- // z /= n;
-
-}
-
-
-
-
-template
-void AxisAngle4::setFromQuat(T x, T y, T z, T w) {
- // This logic can calculate angle without normalization.
- // The direction of (x,y,z) and the sign of rotation cancel
- // each other to calculate a right answer.
-
- T sin_a2 = VmUtil::sqrt(x*x + y*y + z*z); // |sin a/2|, w = cos a/2
- this->angle = 2.0*VmUtil::atan2(sin_a2, w); // 0 <= angle <= PI , because 0 < sin_a2
- this->x = x;
- this->y = y;
- this->z = z;
-}
-
-#ifdef VM_INCLUDE_TOSTRING
-template
-VM_STRING_STD::string AxisAngle4::toString() const {
- VM_TOSTRING
-}
-#endif
-
-VM_END_NS
-
-#ifdef VM_INCLUDE_IO
-template
-VM_IOSTREAM_STD::ostream& operator<<(VM_IOSTREAM_STD::ostream& o, const VM_VECMATH_NS::AxisAngle4& a1) {
- return o << "(" << a1.x << "," << a1.y << ","
- << a1.z << "," << a1.angle << ")";
-}
-
-// Anfang Änderung Marcus
-template
-VM_IOSTREAM_STD::istream& operator>>(VM_IOSTREAM_STD::istream& i, const VM_VECMATH_NS::AxisAngle4& a1) {
-
- char c;
-
- i >> c;
- i >> a1.x;
- i >> c;
- i >> a1.y;
- i >> c;
- i >> a1.z;
- i >> c;
- i >> a1.angle;
- i >> c;
-
- return i;
-}
-// Ende Änderung Marcus
-
-#endif
-
-#endif /* AXISANGLE4_H */
diff --git a/Utilities/vecmath/AxisAngle4_.h b/Utilities/vecmath/AxisAngle4_.h
deleted file mode 100644
index 5706c8a524..0000000000
--- a/Utilities/vecmath/AxisAngle4_.h
+++ /dev/null
@@ -1,323 +0,0 @@
-/*
- Copyright (C) 1997,1998,1999
- Kenji Hiranabe, Eiwa System Management, Inc.
-
- This program is free software.
- Implemented by Kenji Hiranabe(hiranabe@esm.co.jp),
- conforming to the Java(TM) 3D API specification by Sun Microsystems.
-
- Permission to use, copy, modify, distribute and sell this software
- and its documentation for any purpose is hereby granted without fee,
- provided that the above copyright notice appear in all copies and
- that both that copyright notice and this permission notice appear
- in supporting documentation. Kenji Hiranabe and Eiwa System Management,Inc.
- makes no representations about the suitability of this software for any
- purpose. It is provided "AS IS" with NO WARRANTY.
-*/
-#ifndef AXISANGLE4__H
-#define AXISANGLE4__H
-
-#include "VmUtil.h"
-#include "Matrix4_.h"
-
-VM_BEGIN_NS
-
-/**
- * A 4 element axis angle represented by
- * x,y,z,angle components. An axis angle is a rotation of angle (radians) about
- * the vector (x,y,z).
- * @version specification 1.1, implementation $Revision$, $Date$
- * @author Kenji hiranabe
- */
-template
-class AxisAngle4 {
-/*
- * $Log$
- * Revision 1.3 2005/10/13 13:50:04 maleike
- * FIX: doxygen warnings
- *
- * Revision 1.2 2003/04/22 14:42:11 max
- * made inclusions of vecmath header files "local" (for gcc 3.3 support)
- *
- * Revision 1.1 2002/11/16 12:25:36 mark
- * vecmath bibliothek
- * in cvs, da einige bugs behoben
- *
- * Revision 1.4 1999/10/06 02:52:46 hiranabe
- * Java3D 1.2 and namespace
- *
- * Revision 1.3 1999/10/05 06:19:19 hiranabe
- * Java3D 1.2
- * AxisAngle4(Vector3,T)
- * set(Vector3,T)
- *
- * Revision 1.2 1999/05/26 00:59:37 hiranabe
- * support Visual C++
- *
- * Revision 1.1 1999/03/04 11:07:09 hiranabe
- * Initial revision
- *
- * Revision 1.1 1999/03/04 11:07:09 hiranabe
- * Initial revision
- *
- */
-/*
- * I assumed that the length of axis vectors is not significant.
- */
-public:
- /**
- * the type for values
- */
- typedef T value_type;
-
- /**
- * The x coordinate.
- */
- T x;
-
- /**
- * The y coordinate.
- */
- T y;
-
- /**
- * The z coordinate.
- */
- T z;
-
- /**
- * The angle.
- */
- T angle;
-
- /**
- * Constructs and initializes an AxisAngle4 from the specified x, y, z,
- * and angle.
- * @param xvalue the x coordinate
- * @param yvalue the y coordinate
- * @param zvalue the z coordinate
- * @param anglevalue the angle.
- */
- AxisAngle4(T xvalue, T yvalue, T zvalue, T anglevalue):
- x(xvalue), y(yvalue), z(zvalue), angle(anglevalue) { }
-
- /**
- * Constructs and initializes an AxisAngle4 from the components contained
- * in the array.
- * @param a the array of length 4 containing x,y,z,angle in order
- */
- AxisAngle4(const T a[]):
- x(a[0]), y(a[1]), z(a[2]), angle(a[3]) { }
-
-#if 0
- /**
- * Constructs and initializes a AxisAngle4 from the specified AxisAngle4f.
- * @param a1 the AxisAngle4f containing the initialization x y z angle data
- */
- AxisAngle4(AxisAngle4f a1) {
- set(a1);
- }
-#endif
-
- /**
- * Constructs and initializes a AxisAngle4 to (0,0,1,0).
- */
- AxisAngle4(): x(0), y(0), z(1), angle(0) { }
-
- /**
- * Constructs and initializes an AxisAngle4f from the specified axis
- * and angle.
- *
- * @param axis the axis
- * @param ang the angle
- * @since Java 3D 1.2
- */
- AxisAngle4(const Vector3& axis, T ang):
- x(axis.x), y(axis.y), z(axis.z), angle(ang) { }
-
- /**
- * Sets the value of this AxisAngle4f to the specified axis and
- * angle.
- * @param axis the axis
- * @param ang the angle
- * @since Java 3D 1.2
- */
- void set(const Vector3& axis, T ang) {
- x = axis.x;
- y = axis.y;
- z = axis.z;
- angle = ang;
- }
-
- /**
- * Sets the value of this axis angle to the specified x,y,z,angle.
- * @param x the x coordinate
- * @param y the y coordinate
- * @param z the z coordinate
- * @param angle the angle
- */
- void set(T x, T y, T z, T angle) {
- this->x = x;
- this->y = y;
- this->z = z;
- this->angle = angle;
- }
-
- /**
- * Sets the value of this axis angle from the 4 values specified in the array.
- * @param a the array of length 4 containing x,y,z,angle in order
- */
- void set(const T a[]) {
- assert(a != 0);
- x = a[0];
- y = a[1];
- z = a[2];
- angle = a[3];
- }
-
- /**
- * Sets the value of this axis angle to the value of axis angle t1.
- * @param a1 the axis angle to be copied
- */
- void set(const AxisAngle4& a1) {
- x = a1.x;
- y = a1.y;
- z = a1.z;
- angle = a1.angle;
- }
-
-#if 0
- /**
- * Sets the value of this axis angle to the value of axis angle t1.
- * @param t1 the axis angle to be copied
- */
- void set(AxisAngle4f a1) {
- x = (float)(a1.x);
- y = (float)(a1.y);
- z = (float)(a1.z);
- angle = (float)(a1.angle);
- }
-#endif
-
- /**
- * Gets the value of this axis angle into the array a of
- * length four in x,y,z,angle order.
- * @param a the array of length four
- */
- void get(T a[]) const {
- assert(a != 0);
- a[0] = x;
- a[1] = y;
- a[2] = z;
- a[3] = angle;
- }
-
- /**
- * Sets the value of this axis-angle to the rotational component of the
- * passed matrix.
- * @param m1 the matrix4
- */
- void set(const Matrix4& m1) {
- setFromMat(
- m1.m00, m1.m01, m1.m02,
- m1.m10, m1.m11, m1.m12,
- m1.m20, m1.m21, m1.m22
- );
- }
-
- /**
- * Sets the value of this axis-angle to the rotational component of the
- * passed matrix.
- * @param m1 the matrix3f
- */
- void set(const Matrix3& m1) {
- setFromMat(
- m1.m00, m1.m01, m1.m02,
- m1.m10, m1.m11, m1.m12,
- m1.m20, m1.m21, m1.m22
- );
- }
-
- /**
- * Sets the value of this axis-angle to the rotational equivalent of the
- * passed quaternion.
- * @param q1 the Quat4
- */
- void set(const Quat4& q1);
-
- // helper method
-protected:
- void setFromMat(T m00, T m01, T m02,
- T m10, T m11, T m12,
- T m20, T m21, T m22);
-
- void setFromQuat(T x, T y, T z, T w);
-
-public:
- /**
- * Returns true if all of the data members of AxisAngle4 t1 are equal to the corresponding
- * data members in this
- * @param a1 the vector with which the comparison is made.
- */
- bool equals(const AxisAngle4& a1) const {
- return x == a1.x && y == a1.y && z == a1.z && angle == a1.angle;
- }
-
- /**
- * Returns true if the L-infinite distance between this axis-angle and axis-angle t1 is
- * less than or equal to the epsilon parameter, otherwise returns false. The L-infinite
- * distance is equal to MAX[abs(x1-x2), abs(y1-y2), abs(z1-z2), abs(angle1-angle2)].
- * @param a1 the axis-angle to be compared to this axis-angle
- * @param epsilon the threshold value
- */
- bool epsilonEquals(const AxisAngle4& a1, T epsilon) const {
- return (VmUtil::abs(a1.x - x) <= epsilon) &&
- (VmUtil::abs(a1.y - y) <= epsilon) &&
- (VmUtil::abs(a1.z - z) <= epsilon) &&
- (VmUtil::abs(a1.angle - angle) <= epsilon);
- }
-
- /**
- * Returns a hash number based on the data values in this object.
- * Two different AxisAngle4 objects with identical data values
- * (ie, returns true for equals(AxisAngle4) ) will return the same hash number.
- * Two vectors with different data members may return the same hash value,
- * although this is not likely.
- */
- size_t hashCode() const {
- return VmUtil::hashCode(sizeof *this, this);
- }
-
- /**
- * Returns a string that contains the values of this AxisAngle4. The form is (x,y,z,angle).
- * @return the String representation
- */
-#ifdef VM_INCLUDE_TOSTRING
-VM_STRING_STD::string toString() const;
-#endif
-
- // copy constructor and operator = is made by complier
-
- bool operator==(const AxisAngle4& m1) const {
- return equals(m1);
- }
-
-};
-
-VM_END_NS
-
-#ifdef VM_INCLUDE_IO
-template
-VM_IOSTREAM_STD::ostream& operator<<(VM_IOSTREAM_STD::ostream& o, const VM_VECMATH_NS::AxisAngle4& t1);
-#endif
-
-VM_BEGIN_NS
-
-typedef AxisAngle4 AxisAngle4d;
-typedef AxisAngle4 AxisAngle4f;
-
-VM_END_NS
-
-
-
-#endif /* AXISANGLE4__H */
diff --git a/Utilities/vecmath/CHANGES b/Utilities/vecmath/CHANGES
deleted file mode 100644
index 576da29c06..0000000000
--- a/Utilities/vecmath/CHANGES
+++ /dev/null
@@ -1,63 +0,0 @@
-HISTOR OF CHANGES:
-
-* 1.2-1.4
-
-** added operator= for Tuples.
- (Thanks > Katsuaki KAWACHI )
-
-** added '/D "TESTALL" /I "." ' to vecmath.dsp
- (Thanks > Takayuki MATSUOKA )
-
-* 1.2-1.3
-
-** This 1.2-1.3 version newly places 'kh_vecmath' namespace around
-the all vecmath classes. Users upgrading from earlier versions,
-there are 2 options.
- (1) Insert 'using namespace kh_vecmath;' into your code.
- (2) undef VM_INCLUDE_NAMESPACE in vm_conf.h to turn off
- the namespace feature. You don't have to change your code.
-
-** For Visual Studio users, vecmath.dsw (Workspace) is provided
-for testing. vecmath.dsp (Project) is a project to create a
-vecmath testing excutable. You don't have to build this project
-unless you need testing.
-
-** Java3D 1.2 conformance
-
- Vector4#Vector4(Tuple3)
- Vector4#set3(Tuple3)
-
- Point4#Point4(Tuple3)
- Point4#set3(Tuple3)
- AxisAngle4#AxisAngle4(Vector3,T)
- AxisAngle4#set(Vector3,T)
-
-** Makefile.unix adjust ($$i -> ./$$i)
- thanks > matsuoka@osaka.whoopeecamp.co.jp
-
-** Point{2,3}.h distance*() method to const
- thanks > okamura@esm.co.jp
-
-** removed static helper method like max,min,abs from Tuple classes
-
-** test sources .cc -> .cpp
-
-** added more tests.
-
-** Visual Studio Workspace and Project support.
-
-* 1.1-1.2
-
-** VM_INCLUDE_STRING -> VM_INCLUDE_TOSTRING in Tuple{3,4}.h
- thanks > kawachi@cim.pe.u-tokyo.ac.jp
-
-** SVD normalization is now done per axis in Matrix{3,4}d.h
-
-* 1.1-1.1
-
-** Adaptation to Microsoft Visual C/C++ 6.0 compiler
- (Thanks > "Lucas Ammon" )
-
-* 1.1-1.0
-
-** first release of vecmath-c++(1999,3/4)
diff --git a/Utilities/vecmath/CMakeLists.txt b/Utilities/vecmath/CMakeLists.txt
deleted file mode 100644
index 55cf487746..0000000000
--- a/Utilities/vecmath/CMakeLists.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-MITK_CREATE_MODULE_CONF(vecmath HEADERS_ONLY)
-
diff --git a/Utilities/vecmath/Color3.h b/Utilities/vecmath/Color3.h
deleted file mode 100644
index a9097d9887..0000000000
--- a/Utilities/vecmath/Color3.h
+++ /dev/null
@@ -1,98 +0,0 @@
-/*
- Copyright (C) 1997,1998,1999
- Kenji Hiranabe, Eiwa System Management, Inc.
-
- This program is free software.
- Implemented by Kenji Hiranabe(hiranabe@esm.co.jp),
- conforming to the Java(TM) 3D API specification by Sun Microsystems.
-
- Permission to use, copy, modify, distribute and sell this software
- and its documentation for any purpose is hereby granted without fee,
- provided that the above copyright notice appear in all copies and
- that both that copyright notice and this permission notice appear
- in supporting documentation. Kenji Hiranabe and Eiwa System Management,Inc.
- makes no representations about the suitability of this software for any
- purpose. It is provided "AS IS" with NO WARRANTY.
-*/
-#ifndef COLOR3_H
-#define COLOR3_H
-
-#include "VmUtil.h"
-#include "Tuple3.h"
-
-VM_BEGIN_NS
-
-/**
- * A 3 element color represented by x,y,z
- * coordinates.
- * @version specification 1.1, implementation $Revision$, $Date$
- * @author Kenji hiranabe
- */
-template
-class Color3 : public Tuple3 {
-/*
- * $Log$
- * Revision 1.2 2003/04/22 14:42:11 max
- * made inclusions of vecmath header files "local" (for gcc 3.3 support)
- *
- * Revision 1.1 2002/11/16 12:25:36 mark
- * vecmath bibliothek
- * in cvs, da einige bugs behoben
- *
- * Revision 1.3 1999/10/06 02:52:46 hiranabe
- * Java3D 1.2 and namespace
- *
- * Revision 1.2 1999/05/26 00:59:37 hiranabe
- * support Visual C++
- *
- * Revision 1.1 1999/03/04 11:07:09 hiranabe
- * Initial revision
- *
- * Revision 1.1 1999/03/04 11:07:09 hiranabe
- * Initial revision
- *
- */
-public:
- /**
- * Constructs and initializes a Color3 from the specified xyz
- * @param x the x coordinate
- * @param y the y coordinate
- * @param z the z coordinate
- */
- Color3(T x, T y, T z): Tuple3(x, y, z) { }
-
- /**
- * Constructs and initializes a Color3 from input array of length 3.
- * @param c the array of length 3 containing xyz in order
- */
- Color3(const T c[]): Tuple3(c) { }
-
- /**
- * Constructs and initializes a Color3 from the specified Tuple3d.
- * @param t1 the Tuple3d containing the initialization x y z data
- */
- Color3(const Tuple3& t1): Tuple3(t1) { }
-
-#if 0
- /**
- * Constructs and initializes a Color3 from the specified Tuple3f.
- * @param t1 the Tuple3f containing the initialization x y z data
- */
- Color3(Tuple3f t1) {
- super(t1);
- }
-#endif
-
- /**
- * Constructs and initializes a Color3 to (0,0,0).
- */
- Color3(): Tuple3() { }
-};
-
-typedef Color3 Color3f;
-typedef Color3 Color3d;
-typedef Color3 Color3b;
-
-VM_END_NS
-
-#endif /* COLOR3_H */
diff --git a/Utilities/vecmath/Color4.h b/Utilities/vecmath/Color4.h
deleted file mode 100644
index 818f020d28..0000000000
--- a/Utilities/vecmath/Color4.h
+++ /dev/null
@@ -1,99 +0,0 @@
-/*
- Copyright (C) 1997,1998,1999
- Kenji Hiranabe, Eiwa System Management, Inc.
-
- This program is free software.
- Implemented by Kenji Hiranabe(hiranabe@esm.co.jp),
- conforming to the Java(TM) 3D API specification by Sun Microsystems.
-
- Permission to use, copy, modify, distribute and sell this software
- and its documentation for any purpose is hereby granted without fee,
- provided that the above copyright notice appear in all copies and
- that both that copyright notice and this permission notice appear
- in supporting documentation. Kenji Hiranabe and Eiwa System Management,Inc.
- makes no representations about the suitability of this software for any
- purpose. It is provided "AS IS" with NO WARRANTY.
-*/
-#ifndef COLOR4_H
-#define COLOR4_H
-
-#include "VmUtil.h"
-#include "Tuple4.h"
-
-VM_BEGIN_NS
-
-/**
- * A 4 element color represented by x,y,z,w
- * coordinates. Color and alpha components.
- * @version specification 1.1, implementation 1.0 $Revision$, $Date$
- * @author Kenji hiranabe
- */
-template
-class Color4 : public Tuple4 {
-/*
- * $Log$
- * Revision 1.2 2003/04/22 14:42:11 max
- * made inclusions of vecmath header files "local" (for gcc 3.3 support)
- *
- * Revision 1.1 2002/11/16 12:25:36 mark
- * vecmath bibliothek
- * in cvs, da einige bugs behoben
- *
- * Revision 1.3 1999/10/06 02:52:46 hiranabe
- * Java3D 1.2 and namespace
- *
- * Revision 1.2 1999/05/26 00:59:37 hiranabe
- * support Visual C++
- *
- * Revision 1.1 1999/03/04 11:07:09 hiranabe
- * Initial revision
- *
- * Revision 1.1 1999/03/04 11:07:09 hiranabe
- * Initial revision
- *
- */
-public:
- /**
- * Constructs and initializes a Color4 from the specified xyzw
- * @param x the x coordinate
- * @param y the y coordinate
- * @param z the z coordinate
- * @param w the w coordinate
- */
- Color4(T x, T y, T z, T w): Tuple4(x, y, z, w) { }
-
- /**
- * Constructs and initializes a Color4 from input array of length 4.
- * @param c the array of length 4 containing xyzw in order
- */
- Color4(const T c[]): Tuple4(c) { }
-
- /**
- * Constructs and initializes a Color4 from the specified Tuple4d.
- * @param t1 the Tuple4d containing the initialization x y z w data
- */
- Color4(const Tuple4& t1): Tuple4(t1) { }
-
-#if 0
- /**
- * Constructs and initializes a Color4 from the specified Tuple4.
- * @param t1 the Tuple4 containing the initialization x y z w data
- */
- Color4(Tuple4 t1) {
- Tuple4(t1);
- }
-#endif
-
- /**
- * Constructs and initializes a Color4 to (0,0,0,0).
- */
- Color4(): Tuple4() { }
-};
-
-typedef Color4 Color4f;
-typedef Color4 Color4d;
-typedef Color4 Color4b;
-
-VM_END_NS
-
-#endif /* COLOR4_H */
diff --git a/Utilities/vecmath/Matrix3.h b/Utilities/vecmath/Matrix3.h
deleted file mode 100644
index d504509d62..0000000000
--- a/Utilities/vecmath/Matrix3.h
+++ /dev/null
@@ -1,890 +0,0 @@
-/*
- Copyright (C) 1997,1998,1999
- Kenji Hiranabe, Eiwa System Management, Inc.
-
- This program is free software.
- Implemented by Kenji Hiranabe(hiranabe@esm.co.jp),
- conforming to the Java(TM) 3D API specification by Sun Microsystems.
-
- Permission to use, copy, modify, distribute and sell this software
- and its documentation for any purpose is hereby granted without fee,
- provided that the above copyright notice appear in all copies and
- that both that copyright notice and this permission notice appear
- in supporting documentation. Kenji Hiranabe and Eiwa System Management,Inc.
- makes no representations about the suitability of this software for any
- purpose. It is provided "AS IS" with NO WARRANTY.
-*/
-#ifndef MATRIX3_H
-#define MATRIX3_H
-
-#include "VmUtil.h"
-#include "Matrix3_.h"
-#include "AxisAngle4_.h"
-#include "Quat4_.h"
-
-VM_BEGIN_NS
-
-template
-Matrix3::Matrix3(T n00, T n01, T n02,
- T n10, T n11, T n12,
- T n20, T n21, T n22):
- m00(n00), m01(n01), m02(n02),
- m10(n10), m11(n11), m12(n12),
- m20(n20), m21(n21), m22(n22) { }
-
-template
-Matrix3::Matrix3(const T v[]):
- m00(v[ 0]), m01(v[ 1]), m02(v[ 2]),
- m10(v[ 3]), m11(v[ 4]), m12(v[ 5]),
- m20(v[ 6]), m21(v[ 7]), m22(v[ 8]) { }
-
-#ifdef VM_INCLUDE_CONVERSION_FROM_2DARRAY
-template
-Matrix3::Matrix3(const T v[][3]):
- m00(v[0][0]), m01(v[0][1]), m02(v[0][2]),
- m10(v[1][0]), m11(v[1][1]), m12(v[1][2]),
- m20(v[2][0]), m21(v[2][1]), m22(v[2][2]) { }
-#endif
-
-template
-Matrix3::Matrix3():
- m00(0), m01(0), m02(0),
- m10(0), m11(0), m12(0),
- m20(0), m21(0), m22(0) { }
-
-template
-void Matrix3::set(T m00, T m01, T m02,
- T m10, T m11, T m12,
- T m20, T m21, T m22) {
- this->m00 = m00; this->m01 = m01; this->m02 = m02;
- this->m10 = m10; this->m11 = m11; this->m12 = m12;
- this->m20 = m20; this->m21 = m21; this->m22 = m22;
-}
-
-template
-void Matrix3::set(const Matrix3& m1) {
- m00 = m1.m00; m01 = m1.m01; m02 = m1.m02;
- m10 = m1.m10; m11 = m1.m11; m12 = m1.m12;
- m20 = m1.m20; m21 = m1.m21; m22 = m1.m22;
-}
-
-template
-void Matrix3::set(const T v[]) {
- assert(v != 0);
- m00 = v[ 0]; m01 = v[ 1]; m02 = v[ 2];
- m10 = v[ 3]; m11 = v[ 4]; m12 = v[ 5];
- m20 = v[ 6]; m21 = v[ 7]; m22 = v[ 8];
-}
-
-#ifdef VM_INCLUDE_CONVERSION_FROM_2DARRAY
-template
-void Matrix3::set(const T m[][3]) {
- assert(m != 0);
- m00 = m[0][0]; m01 = m[0][1]; m02 = m[0][2];
- m10 = m[1][0]; m11 = m[1][1]; m12 = m[1][2];
- m20 = m[2][0]; m21 = m[2][1]; m22 = m[2][2];
-}
-#endif
-
-template
-void Matrix3::setIdentity() {
- m00 = 1.0; m01 = 0.0; m02 = 0.0;
- m10 = 0.0; m11 = 1.0; m12 = 0.0;
- m20 = 0.0; m21 = 0.0; m22 = 1.0;
-}
-
-template
-void Matrix3::setScale(T scale) {
- SVD(this);
- m00 *= scale;
- m11 *= scale;
- m22 *= scale;
-}
-
-
-template
-void Matrix3::set(const Quat4& q1) {
- setFromQuat(q1.x, q1.y, q1.z, q1.w);
-}
-
-template
-void Matrix3::set(const AxisAngle4& a1) {
- setFromAxisAngle(a1.x, a1.y, a1.z, a1.angle);
-}
-
-template
-void Matrix3::setElement(size_t row, size_t column, T value) {
- assert(row < 3);
- assert(column < 3);
- if (row == 0)
- if (column == 0)
- m00 = value;
- else if (column == 1)
- m01 = value;
- else if (column == 2)
- m02 = value;
- else
- VM_OUT_OF_RANGE;
- else if (row == 1)
- if (column == 0)
- m10 = value;
- else if (column == 1)
- m11 = value;
- else if (column == 2)
- m12 = value;
- else
- VM_OUT_OF_RANGE;
- else if (row == 2)
- if (column == 0)
- m20 = value;
- else if (column == 1)
- m21 = value;
- else if (column == 2)
- m22 = value;
- else
- VM_OUT_OF_RANGE;
- else
- VM_OUT_OF_RANGE;
-}
-
-template
-T Matrix3::getElement(size_t row, size_t column) const {
- assert(row < 3);
- assert(column < 3);
- if (row == 0)
- if (column == 0)
- return m00;
- else if (column == 1)
- return m01;
- else if (column == 2)
- return m02;
- else {
- VM_OUT_OF_RANGE;
- }
- else if (row == 1)
- if (column == 0)
- return m10;
- else if (column == 1)
- return m11;
- else if (column == 2)
- return m12;
- else {
- VM_OUT_OF_RANGE;
- }
-
- else if (row == 2)
- if (column == 0)
- return m20;
- else if (column == 1)
- return m21;
- else if (column == 2)
- return m22;
- else {
- VM_OUT_OF_RANGE;
- }
- else {
- VM_OUT_OF_RANGE;
- }
- return 0;
-}
-
-template
-T& Matrix3::getElementReference(size_t row, size_t column) {
- assert(row < 3);
- assert(column < 3);
- if (row == 0)
- if (column == 0)
- return m00;
- else if (column == 1)
- return m01;
- else if (column == 2)
- return m02;
- else {
- VM_OUT_OF_RANGE;
- }
- else if (row == 1)
- if (column == 0)
- return m10;
- else if (column == 1)
- return m11;
- else if (column == 2)
- return m12;
- else {
- VM_OUT_OF_RANGE;
- }
-
- else if (row == 2)
- if (column == 0)
- return m20;
- else if (column == 1)
- return m21;
- else if (column == 2)
- return m22;
- else {
- VM_OUT_OF_RANGE;
- }
- else {
- VM_OUT_OF_RANGE;
- }
-
- // error anyway
- static T dummy;
- return dummy;
-}
-
-template
-void Matrix3::setRow(size_t row, T x, T y, T z) {
- assert(row < 3);
- if (row == 0) {
- m00 = x;
- m01 = y;
- m02 = z;
- } else if (row == 1) {
- m10 = x;
- m11 = y;
- m12 = z;
- } else if (row == 2) {
- m20 = x;
- m21 = y;
- m22 = z;
- } else {
- VM_OUT_OF_RANGE;
- }
-}
-
-template
-void Matrix3::setRow(size_t row, const Vector3& v) {
- assert(row < 3);
- if (row == 0) {
- m00 = v.x;
- m01 = v.y;
- m02 = v.z;
- } else if (row == 1) {
- m10 = v.x;
- m11 = v.y;
- m12 = v.z;
- } else if (row == 2) {
- m20 = v.x;
- m21 = v.y;
- m22 = v.z;
- } else {
- VM_OUT_OF_RANGE;
- }
-}
-
-template
-void Matrix3::setRow(size_t row, const T v[]) {
- assert(v != 0);
- assert(row < 3);
- if (row == 0) {
- m00 = v[0];
- m01 = v[1];
- m02 = v[2];
- } else if (row == 1) {
- m10 = v[0];
- m11 = v[1];
- m12 = v[2];
- } else if (row == 2) {
- m20 = v[0];
- m21 = v[1];
- m22 = v[2];
- } else {
- VM_OUT_OF_RANGE;
- }
-}
-
-template
-void Matrix3::getRow(size_t row, T v[]) const {
- assert(v != 0);
- assert(row < 3);
- if (row == 0) {
- v[0] = m00;
- v[1] = m01;
- v[2] = m02;
- } else if (row == 1) {
- v[0] = m10;
- v[1] = m11;
- v[2] = m12;
- } else if (row == 2) {
- v[0] = m20;
- v[1] = m21;
- v[2] = m22;
- } else {
- VM_OUT_OF_RANGE;
- }
-}
-
-template
-void Matrix3::getRow(size_t row, Vector3* v) const {
- assert(v != 0);
- assert(row < 3);
- if (row == 0) {
- v->x = m00;
- v->y = m01;
- v->z = m02;
- } else if (row == 1) {
- v->x = m10;
- v->y = m11;
- v->z = m12;
- } else if (row == 2) {
- v->x = m20;
- v->y = m21;
- v->z = m22;
- } else {
- VM_OUT_OF_RANGE;
- }
-}
-
-template
-void Matrix3::setColumn(size_t column, T x, T y, T z) {
- assert(column < 3);
- if (column == 0) {
- m00 = x;
- m10 = y;
- m20 = z;
- } else if (column == 1) {
- m01 = x;
- m11 = y;
- m21 = z;
- } else if (column == 2) {
- m02 = x;
- m12 = y;
- m22 = z;
- } else {
- VM_OUT_OF_RANGE;
- }
-}
-
-template
-void Matrix3::setColumn(size_t column, const Vector3& v) {
- assert(column < 3);
- if (column == 0) {
- m00 = v.x;
- m10 = v.y;
- m20 = v.z;
- } else if (column == 1) {
- m01 = v.x;
- m11 = v.y;
- m21 = v.z;
- } else if (column == 2) {
- m02 = v.x;
- m12 = v.y;
- m22 = v.z;
- } else {
- VM_OUT_OF_RANGE;
- }
-}
-
-template
-void Matrix3::setColumn(size_t column, const T v[]) {
- assert(v != 0);
- assert(column < 3);
- if (column == 0) {
- m00 = v[0];
- m10 = v[1];
- m20 = v[2];
- } else if (column == 1) {
- m01 = v[0];
- m11 = v[1];
- m21 = v[2];
- } else if (column == 2) {
- m02 = v[0];
- m12 = v[1];
- m22 = v[2];
- } else {
- VM_OUT_OF_RANGE;
- }
-}
-
-
-template
-void Matrix3::getColumn(size_t column, Vector3* v) const {
- assert(column < 3);
- assert(v != 0);
- if (column == 0) {
- v->x = m00;
- v->y = m10;
- v->z = m20;
- } else if (column == 1) {
- v->x = m01;
- v->y = m11;
- v->z = m21;
- } else if (column == 2) {
- v->x = m02;
- v->y = m12;
- v->z = m22;
- } else {
- VM_OUT_OF_RANGE;
- }
-}
-
-template
-void Matrix3::getColumn(size_t column, T v[]) const {
- assert(column < 3);
- assert(v != 0);
- if (column == 0) {
- v[0] = m00;
- v[1] = m10;
- v[2] = m20;
- } else if (column == 1) {
- v[0] = m01;
- v[1] = m11;
- v[2] = m21;
- } else if (column == 2) {
- v[0] = m02;
- v[1] = m12;
- v[2] = m22;
- } else {
- VM_OUT_OF_RANGE;
- }
-}
-
-template
-T Matrix3::getScale() const {
- return SVD(0);
-}
-
-template
-void Matrix3::add(T scalar) {
- m00 += scalar; m01 += scalar; m02 += scalar;
- m10 += scalar; m11 += scalar; m12 += scalar;
- m20 += scalar; m21 += scalar; m22 += scalar;
-}
-
-template
-void Matrix3::sub(T scalar) {
- add(-scalar);
-}
-
-template
-void Matrix3::add(T scalar, const Matrix3& m1) {
- set(m1);
- add(scalar);
-}
-
-
-template
-void Matrix3::add(const Matrix3& m1, const Matrix3& m2) {
- // note this is alias safe.
- set(
- m1.m00 + m2.m00,
- m1.m01 + m2.m01,
- m1.m02 + m2.m02,
- m1.m10 + m2.m10,
- m1.m11 + m2.m11,
- m1.m12 + m2.m12,
- m1.m20 + m2.m20,
- m1.m21 + m2.m21,
- m1.m22 + m2.m22
- );
-}
-
-
-template
-void Matrix3::add(const Matrix3& m1) {
- m00 += m1.m00; m01 += m1.m01; m02 += m1.m02;
- m10 += m1.m10; m11 += m1.m11; m12 += m1.m12;
- m20 += m1.m20; m21 += m1.m21; m22 += m1.m22;
-}
-
-
-template
-void Matrix3::sub(const Matrix3& m1, const Matrix3& m2) {
- // note this is alias safe.
- set(
- m1.m00 - m2.m00,
- m1.m01 - m2.m01,
- m1.m02 - m2.m02,
- m1.m10 - m2.m10,
- m1.m11 - m2.m11,
- m1.m12 - m2.m12,
- m1.m20 - m2.m20,
- m1.m21 - m2.m21,
- m1.m22 - m2.m22
- );
-}
-
-template
-void Matrix3::sub(const Matrix3& m1) {
- m00 -= m1.m00; m01 -= m1.m01; m02 -= m1.m02;
- m10 -= m1.m10; m11 -= m1.m11; m12 -= m1.m12;
- m20 -= m1.m20; m21 -= m1.m21; m22 -= m1.m22;
-}
-
-
-template
-void Matrix3::transpose() {
- T tmp = m01;
- m01 = m10;
- m10 = tmp;
-
- tmp = m02;
- m02 = m20;
- m20 = tmp;
-
- tmp = m12;
- m12 = m21;
- m21 = tmp;
-}
-
-
-template
-void Matrix3::transpose(const Matrix3& m1) {
- // alias-safe
- set(m1);
- transpose();
-}
-
-
-template
-void Matrix3::invert(const Matrix3& m1) {
- // alias-safe way.
- set(m1);
- invert();
-}
-
-
-template
-void Matrix3::invert() {
- T s = determinant();
- // zero div may happen
- s = 1/s;
- // alias-safe way.
- set(
- m11*m22 - m12*m21, m02*m21 - m01*m22, m01*m12 - m02*m11,
- m12*m20 - m10*m22, m00*m22 - m02*m20, m02*m10 - m00*m12,
- m10*m21 - m11*m20, m01*m20 - m00*m21, m00*m11 - m01*m10
- );
- mul(s);
-}
-
-
-template
-T Matrix3::determinant() const {
- // less *,+,- calculation than expanded expression.
- return m00*(m11*m22 - m21*m12)
- - m01*(m10*m22 - m20*m12)
- + m02*(m10*m21 - m20*m11);
-}
-
-
-template
-void Matrix3::set(T scale) {
- m00 = scale; m01 = 0.0; m02 = 0.0;
- m10 = 0.0; m11 = scale; m12 = 0.0;
- m20 = 0.0; m21 = 0.0; m22 = scale;
-}
-
-template
-void Matrix3::rotX(T angle) {
- T c = VmUtil::cos(angle);
- T s = VmUtil::sin(angle);
- m00 = 1.0; m01 = 0.0; m02 = 0.0;
- m10 = 0.0; m11 = c; m12 = -s;
- m20 = 0.0; m21 = s; m22 = c;
-}
-
-template
-void Matrix3::rotY(T angle) {
- T c = VmUtil::cos(angle);
- T s = VmUtil::sin(angle);
- m00 = c; m01 = 0.0; m02 = s;
- m10 = 0.0; m11 = 1.0; m12 = 0.0;
- m20 = -s; m21 = 0.0; m22 = c;
-}
-
-template
-void Matrix3::rotZ(T angle) {
- T c = VmUtil::cos(angle);
- T s = VmUtil::sin(angle);
- m00 = c; m01 = -s; m02 = 0.0;
- m10 = s; m11 = c; m12 = 0.0;
- m20 = 0.0; m21 = 0.0; m22 = 1.0;
-}
-
-template
-void Matrix3::mul(T scalar) {
- m00 *= scalar; m01 *= scalar; m02 *= scalar;
- m10 *= scalar; m11 *= scalar; m12 *= scalar;
- m20 *= scalar; m21 *= scalar; m22 *= scalar;
-}
-
-template
-void Matrix3::mul(T scalar, const Matrix3& m1) {
- set(m1);
- mul(scalar);
-}
-
-template
-void Matrix3::mul(const Matrix3& m1) {
- mul(*this, m1);
-}
-
-
-template
-void Matrix3::mul(const Matrix3& m1, const Matrix3& m2) {
- // alias-safe way.
- set(
- m1.m00*m2.m00 + m1.m01*m2.m10 + m1.m02*m2.m20,
- m1.m00*m2.m01 + m1.m01*m2.m11 + m1.m02*m2.m21,
- m1.m00*m2.m02 + m1.m01*m2.m12 + m1.m02*m2.m22,
-
- m1.m10*m2.m00 + m1.m11*m2.m10 + m1.m12*m2.m20,
- m1.m10*m2.m01 + m1.m11*m2.m11 + m1.m12*m2.m21,
- m1.m10*m2.m02 + m1.m11*m2.m12 + m1.m12*m2.m22,
-
- m1.m20*m2.m00 + m1.m21*m2.m10 + m1.m22*m2.m20,
- m1.m20*m2.m01 + m1.m21*m2.m11 + m1.m22*m2.m21,
- m1.m20*m2.m02 + m1.m21*m2.m12 + m1.m22*m2.m22
- );
-}
-
-template
-void Matrix3::mulTransposeRight(const Matrix3& m1, const Matrix3& m2) {
- // alias-safe way.
- set(
- m1.m00*m2.m00 + m1.m01*m2.m01 + m1.m02*m2.m02,
- m1.m00*m2.m10 + m1.m01*m2.m11 + m1.m02*m2.m12,
- m1.m00*m2.m20 + m1.m01*m2.m21 + m1.m02*m2.m22,
-
- m1.m10*m2.m00 + m1.m11*m2.m01 + m1.m12*m2.m02,
- m1.m10*m2.m10 + m1.m11*m2.m11 + m1.m12*m2.m12,
- m1.m10*m2.m20 + m1.m11*m2.m21 + m1.m12*m2.m22,
-
- m1.m20*m2.m00 + m1.m21*m2.m01 + m1.m22*m2.m02,
- m1.m20*m2.m10 + m1.m21*m2.m11 + m1.m22*m2.m12,
- m1.m20*m2.m20 + m1.m21*m2.m21 + m1.m22*m2.m22
- );
-}
-
-template
-void Matrix3::mulTransposeLeft(const Matrix3& m1, const Matrix3& m2) {
- // alias-safe way.
- set(
- m1.m00*m2.m00 + m1.m10*m2.m10 + m1.m20*m2.m20,
- m1.m00*m2.m01 + m1.m10*m2.m11 + m1.m20*m2.m21,
- m1.m00*m2.m02 + m1.m10*m2.m12 + m1.m20*m2.m22,
-
- m1.m01*m2.m00 + m1.m11*m2.m10 + m1.m21*m2.m20,
- m1.m01*m2.m01 + m1.m11*m2.m11 + m1.m21*m2.m21,
- m1.m01*m2.m02 + m1.m11*m2.m12 + m1.m21*m2.m22,
-
- m1.m02*m2.m00 + m1.m12*m2.m10 + m1.m22*m2.m20,
- m1.m02*m2.m01 + m1.m12*m2.m11 + m1.m22*m2.m21,
- m1.m02*m2.m02 + m1.m12*m2.m12 + m1.m22*m2.m22
- );
-}
-
-
-template
-bool Matrix3::equals(const Matrix3& m1) const {
- return m00 == m1.m00
- && m01 == m1.m01
- && m02 == m1.m02
- && m10 == m1.m10
- && m11 == m1.m11
- && m12 == m1.m12
- && m20 == m1.m20
- && m21 == m1.m21
- && m22 == m1.m22;
-}
-
-template
-bool Matrix3::epsilonEquals(const Matrix3& m1, T epsilon) const {
- return abs(m00 - m1.m00) <= epsilon
- && abs(m01 - m1.m01) <= epsilon
- && abs(m02 - m1.m02 ) <= epsilon
-
- && abs(m10 - m1.m10) <= epsilon
- && abs(m11 - m1.m11) <= epsilon
- && abs(m12 - m1.m12) <= epsilon
-
- && abs(m20 - m1.m20) <= epsilon
- && abs(m21 - m1.m21) <= epsilon
- && abs(m22 - m1.m22) <= epsilon;
-}
-
-
-template
-void Matrix3::setZero() {
- m00 = 0.0; m01 = 0.0; m02 = 0.0;
- m10 = 0.0; m11 = 0.0; m12 = 0.0;
- m20 = 0.0; m21 = 0.0; m22 = 0.0;
-}
-
-template
-void Matrix3::negate() {
- m00 = -m00; m01 = -m01; m02 = -m02;
- m10 = -m10; m11 = -m11; m12 = -m12;
- m20 = -m20; m21 = -m21; m22 = -m22;
-}
-
-
-template
-void Matrix3::transform(const Tuple3& t, Tuple3* result) const {
- // alias-safe
- result->set(
- m00*t.x + m01*t.y + m02*t.z,
- m10*t.x + m11*t.y + m12*t.z,
- m20*t.x + m21*t.y + m22*t.z
- );
-}
-
-
-template
-T Matrix3::SVD(Matrix3* rot) const {
- // this is a simple svd.
- // Not complete but fast and reasonable.
-
- /*
- * SVD scale factors(squared) are the 3 roots of
- *
- * | xI - M*MT | = 0.
- *
- * This will be expanded as follows
- *
- * x^3 - A x^2 + B x - C = 0
- *
- * where A, B, C can be denoted by 3 roots x0, x1, x2.
- *
- * A = (x0+x1+x2), B = (x0x1+x1x2+x2x0), C = x0x1x2.
- *
- * An avarage of x0,x1,x2 is needed here. C^(1/3) is a cross product
- * normalization factor.
- * So here, I use A/3. Note that x should be sqrt'ed for the
- * actual factor.
- */
-
- T s = VmUtil::sqrt((
- m00*m00 + m10*m10 + m20*m20 +
- m01*m01 + m11*m11 + m21*m21 +
- m02*m02 + m12*m12 + m22*m22
- )/3.0
- );
-
- if (rot) {
- // zero-div may occur.
- double n = 1/VmUtil::sqrt(m00*m00 + m10*m10 + m20*m20);
- rot->m00 = m00*n;
- rot->m10 = m10*n;
- rot->m20 = m20*n;
-
- n = 1/VmUtil::sqrt(m01*m01 + m11*m11 + m21*m21);
- rot->m01 = m01*n;
- rot->m11 = m11*n;
- rot->m21 = m21*n;
-
- n = 1/VmUtil::sqrt(m02*m02 + m12*m12 + m22*m22);
- rot->m02 = m02*n;
- rot->m12 = m12*n;
- rot->m22 = m22*n;
- }
-
- return s;
-}
-
-
-template
-void Matrix3::setFromQuat(T x, T y, T z, T w) {
- T n = x*x + y*y + z*z + w*w;
- T s = (n > 0.0) ? (2.0/n) : 0.0;
-
- T xs = x*s, ys = y*s, zs = z*s;
- T wx = w*xs, wy = w*ys, wz = w*zs;
- T xx = x*xs, xy = x*ys, xz = x*zs;
- T yy = y*ys, yz = y*zs, zz = z*zs;
-
- m00 = 1.0 - (yy + zz); m01 = xy - wz; m02 = xz + wy;
- m10 = xy + wz; m11 = 1.0 - (xx + zz); m12 = yz - wx;
- m20 = xz - wy; m21 = yz + wx; m22 = 1.0 - (xx + yy);
-}
-
-template
-void Matrix3::setFromAxisAngle(T x, T y, T z, T angle) {
- // Taken from Rick's which is taken from Wertz. pg. 412
- // Bug Fixed and changed into right-handed by hiranabe
- T n = VmUtil::sqrt(x*x + y*y + z*z);
- // zero-div may occur
- n = 1/n;
- x *= n;
- y *= n;
- z *= n;
- T c = VmUtil