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Diffusion N2C2 Challenge 2019 0273678b9d92

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j562rAuthored on Jul 23 2020, 4:49 PM
j562rPushed on Jul 23 2020, 4:49 PM
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rNNCC1fa44e50969b: Add basic git setup
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rNNCC0273678b9d92

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PaperFigures.ipynb

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SubmissionSteps.ipynb

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docker/Dockerfile

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docker/requirements.txt

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feature_reconstruction.md

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mtc/challenge_pipelines/__init__.py

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mtc/challenge_pipelines/bert/__init__.py

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mtc/challenge_pipelines/calculate_cluster_idx.py

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mtc/challenge_pipelines/create_sentence_embeddings.py

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mtc/challenge_pipelines/data_augmentation/__init__.py

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mtc/challenge_pipelines/data_augmentation/augment_data.py

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mtc/challenge_pipelines/data_augmentation/google_trans.py

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mtc/challenge_pipelines/data_augmentation/microsoft_trans.py

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mtc/challenge_pipelines/example_run.py

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mtc/challenge_pipelines/example_run_step1.py

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mtc/challenge_pipelines/example_run_step2.py

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mtc/challenge_pipelines/playground.py

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mtc/challenge_pipelines/preprocess_data.py

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mtc/challenge_pipelines/train_embeddings.py

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mtc/copied_from_bert/__init__.py

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mtc/copied_from_bert/create_embedding_files.py

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mtc/copied_from_bert/evaluate_bert_test.py

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mtc/copied_from_bert/features_for_bert.py

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mtc/copied_from_bert/n2c2_processor.py

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mtc/copied_from_bert/pytorch_transformers/__init__.py

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mtc/copied_from_bert/pytorch_transformers/__main__.py

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mtc/copied_from_bert/pytorch_transformers/convert_gpt2_checkpoint_to_pytorch.py

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mtc/copied_from_bert/pytorch_transformers/convert_openai_checkpoint_to_pytorch.py

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mtc/copied_from_bert/pytorch_transformers/convert_pytorch_checkpoint_to_tf.py

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mtc/copied_from_bert/pytorch_transformers/convert_tf_checkpoint_to_pytorch.py

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mtc/copied_from_bert/pytorch_transformers/convert_transfo_xl_checkpoint_to_pytorch.py

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mtc/copied_from_bert/pytorch_transformers/convert_xlm_checkpoint_to_pytorch.py

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mtc/copied_from_bert/pytorch_transformers/convert_xlnet_checkpoint_to_pytorch.py

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mtc/copied_from_bert/pytorch_transformers/file_utils.py

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mtc/copied_from_bert/pytorch_transformers/modeling_bert.py

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mtc/copied_from_bert/pytorch_transformers/modeling_gpt2.py

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mtc/copied_from_bert/pytorch_transformers/modeling_openai.py

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mtc/copied_from_bert/pytorch_transformers/modeling_transfo_xl.py

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mtc/copied_from_bert/pytorch_transformers/modeling_transfo_xl_utilities.py

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mtc/copied_from_bert/pytorch_transformers/modeling_utils.py

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mtc/copied_from_bert/pytorch_transformers/modeling_xlm.py

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mtc/copied_from_bert/pytorch_transformers/modeling_xlnet.py

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mtc/copied_from_bert/pytorch_transformers/optimization.py

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mtc/copied_from_bert/pytorch_transformers/tests/__init__.py

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mtc/copied_from_bert/pytorch_transformers/tests/conftest.py

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mtc/copied_from_bert/pytorch_transformers/tests/fixtures/input.txt

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mtc/copied_from_bert/pytorch_transformers/tests/fixtures/sample_text.txt

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mtc/copied_from_bert/pytorch_transformers/tests/fixtures/test_sentencepiece.model

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mtc/copied_from_bert/pytorch_transformers/tests/modeling_bert_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/modeling_common_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/modeling_gpt2_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/modeling_openai_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/modeling_transfo_xl_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/modeling_xlm_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/modeling_xlnet_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/optimization_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/tokenization_bert_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/tokenization_gpt2_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/tokenization_openai_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/tokenization_tests_commons.py

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mtc/copied_from_bert/pytorch_transformers/tests/tokenization_transfo_xl_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/tokenization_utils_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/tokenization_xlm_test.py

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mtc/copied_from_bert/pytorch_transformers/tests/tokenization_xlnet_test.py

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mtc/copied_from_bert/pytorch_transformers/tokenization_bert.py

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mtc/copied_from_bert/pytorch_transformers/tokenization_gpt2.py

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mtc/copied_from_bert/pytorch_transformers/tokenization_openai.py

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mtc/copied_from_bert/pytorch_transformers/tokenization_transfo_xl.py

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mtc/copied_from_bert/pytorch_transformers/tokenization_utils.py

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mtc/copied_from_bert/pytorch_transformers/tokenization_xlm.py

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mtc/copied_from_bert/pytorch_transformers/tokenization_xlnet.py

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mtc/copied_from_bert/run.py

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mtc/copied_from_bert/run_glue.py

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mtc/copied_from_bert/run_glue_m_heads.py

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mtc/copied_from_bert/run_m_heads.py

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mtc/copied_from_bert/utils_glue.py

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mtc/core/__init__.py

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mtc/core/embedding_training.py

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mtc/core/embeddings.py

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mtc/core/evaluator.py

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mtc/core/experiment.py

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mtc/core/preprocessor.py

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mtc/core/sentence.py

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mtc/core/similarity_measures.py

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mtc/generate_results.py

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mtc/helpers/JSONNumpyEncoder.py

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mtc/helpers/MeasureTime.py

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mtc/helpers/VectorSimilarityHelper.py

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mtc/helpers/bert_client.py

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mtc/helpers/bert_embedding_server_worker.py

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mtc/helpers/data_augmentation.py

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mtc/helpers/decorators.py

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mtc/helpers/file_management.py

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mtc/helpers/load_evaluation_methods.py

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mtc/helpers/metrics.py

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mtc/helpers/nlpaug_fun.py

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mtc/helpers/text2digits.py

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mtc/helpers/text_processing.py

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mtc/helpers/util.py

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mtc/ingredient_graph/analyse_graph_scores.py

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mtc/ingredient_graph/eval_graph.py

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mtc/ingredient_graph/graph_calculations.py

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mtc/ingredient_graph/ingredients.py

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mtc/ingredient_graph/tuple_calculations.py

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mtc/mtc_properties.py

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mtc/run_approaches.py

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mtc/validate_submissions.py

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requirements.txt

MITK · MIC · IMSY · DKFZ