The nnUNet team has released a new version of the nnUNet, called nnUNetv2 python code. Currently, in beta, this needs to be tested with MITK.
Code: https://phabricator.mitk.org/source/nnunet/browse/nnunet_remake/
Interface-wise, the commands like `nnUNet_predict` etc. as expected to remain the same. Nevertheless, this would require a sanity test.
Main points to test:
1. The concept of .pkl will be migrated to JSON files. Currently, MITK contains a python snippet to look into .pkl files and dump the necessary info in an arbitrary `mitk_export.json` file . We need to test and probably, adapt to the change from the nnUNet side.
2. Currently, MITK asks nnUnet to dump available models' information (to download) as JSON file and then, parses from the file. Test if this is dumped correctly.