Currently in Kaapana we are using different MITK Miniapps based on an old installer/configuration:
https://www.mitk.org/download/kaapana/phenotyping/
To stay updated, it would be good to change to a current MITK version:
Therefore here a list of usage of this Miniapps:
Installer Container: https://codebase.helmholtz.cloud/kaapana/kaapana/-/blob/develop/data-processing/base-images/base-mitk-phenotyping/Dockerfile
Usage:
MitkFileConverter - https://codebase.helmholtz.cloud/kaapana/kaapana/-/tree/develop/data-processing/kaapana-plugin/processing-containers/mitk-fileconverter
MitkCLResampleImageToReference - https://codebase.helmholtz.cloud/kaapana/kaapana/-/tree/develop/data-processing/kaapana-plugin/processing-containers/mitk-resample
MitkCLResampleImageToReference - https://codebase.helmholtz.cloud/kaapana/kaapana/-/tree/develop/data-processing/processing-pipelines/nnunet/processing-containers/seg-check
MitkCLGlobalImageFeatures - https://codebase.helmholtz.cloud/kaapana/kaapana/-/blob/develop/data-processing/processing-pipelines/radiomics/processing-containers/radiomics/files/radiomics.sh
To reduce image size, it would be good to replace the old configuration in https://ci.mitk.org/job/MITK/job/Kaapana/job/Phenotyping/ with a configuration, that only build the required MITK executables.