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ramien (Gregor Ramien)
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User Since
Jun 12 2018, 10:59 AM (124 w, 18 h)
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Recent Activity

Apr 30 2020

ramien committed rMDTPUBLIC87f279eca3a3: 'roi_labels'->'class_target' in final batch. tutorial, cluster usage updates. (authored by ramien).
'roi_labels'->'class_target' in final batch. tutorial, cluster usage updates.
Apr 30 2020, 7:50 PM

Apr 28 2020

ramien committed rMDTPUBLIC7e3f36fce362: tutorial (authored by ramien).
tutorial
Apr 28 2020, 5:14 PM
ramien committed rMDTPUBLICd072e0a7b1e0: preliminary release notes. tutorial for adding datasets (authored by ramien).
preliminary release notes. tutorial for adding datasets
Apr 28 2020, 4:54 PM

Apr 27 2020

ramien committed rMDTPUBLICe37e8f717a8d: cuda device selection. fix in test example plot (authored by ramien).
cuda device selection. fix in test example plot
Apr 27 2020, 5:14 PM
ramien committed rMDTPUBLIC82ee1b9a56fa: incl gpu arch hint for custom exts in readme (authored by ramien).
incl gpu arch hint for custom exts in readme
Apr 27 2020, 3:09 PM
ramien committed rREGRCNN567db4fb1073: fix in params parsing for optim (authored by ramien).
fix in params parsing for optim
Apr 27 2020, 12:00 PM

Apr 24 2020

ramien committed rMDTPUBLIC842a3c225eb1: fix in params parsing for optim (authored by ramien).
fix in params parsing for optim
Apr 24 2020, 2:30 PM
ramien committed rREGRCNNb58a52f0a31f: fix in params parsing for optim (authored by ramien).
fix in params parsing for optim
Apr 24 2020, 2:03 PM

Apr 23 2020

ramien committed rMDTPUBLIC1939e716b18e: resultstable as csv (authored by ramien).
resultstable as csv
Apr 23 2020, 2:49 PM
ramien committed rREGRCNN9c1e1c4ef5c0: naming changes: cf.eval_test_fold_wise->not cf.ensemble_folds (incl inversion)… (authored by ramien).
naming changes: cf.eval_test_fold_wise->not cf.ensemble_folds (incl inversion)…
Apr 23 2020, 2:25 PM
ramien committed rREGRCNN79a126bb57bb: hold-out test set settings, options (authored by ramien).
hold-out test set settings, options
Apr 23 2020, 2:25 PM

Apr 22 2020

ramien committed rMDTPUBLIC7b96af4985ac: optionally exclude norm and or bias from weight decay (authored by ramien).
optionally exclude norm and or bias from weight decay
Apr 22 2020, 3:27 PM
ramien committed rMDTPUBLIC72978e2b7746: hold-out test set settings, options (authored by ramien).
hold-out test set settings, options
Apr 22 2020, 3:27 PM

Apr 21 2020

ramien committed rMDTPUBLIC42e2ad0c291c: gt anchor matching fix. (authored by ramien).
gt anchor matching fix.
Apr 21 2020, 5:11 PM

Apr 20 2020

ramien committed rREGRCNN101ea103a4d0: opt exclude from weight dec. eval fix. (authored by ramien).
opt exclude from weight dec. eval fix.
Apr 20 2020, 7:33 PM
ramien committed rREGRCNNc120f3374163: toy configs change (authored by ramien).
toy configs change
Apr 20 2020, 7:33 PM
ramien committed rREGRCNN06bcb6fe63cc: opt exclude from weight dec. eval fix. (authored by ramien).
opt exclude from weight dec. eval fix.
Apr 20 2020, 7:30 PM
ramien committed rMDTPUBLICdaf2830bace9: easier resuming to checkpoint: bool flag instead of checkpt path. (authored by ramien).
easier resuming to checkpoint: bool flag instead of checkpt path.
Apr 20 2020, 7:19 PM
ramien committed rMDTPUBLIC1c87e66f6b00: test plots in structured folders. hold-out analysis. predictor fix merge2d3d (authored by ramien).
test plots in structured folders. hold-out analysis. predictor fix merge2d3d
Apr 20 2020, 7:19 PM

Apr 18 2020

ramien committed rMDTPUBLIC3b8762847f19: fix in data loader debug function (authored by ramien).
fix in data loader debug function
Apr 18 2020, 2:52 PM

Apr 17 2020

ramien committed rMDTPUBLICebd449d602fe: toy data generation optionally single-processed (authored by ramien).
toy data generation optionally single-processed
Apr 17 2020, 12:25 PM
ramien committed rMDTPUBLIC687ba14c222e: fix in toy dataloader. (authored by ramien).
fix in toy dataloader.
Apr 17 2020, 11:30 AM
ramien committed rMDTPUBLIC13cc1948a31d: Merge branch 'torch1x' of https://phabricator.mitk.org/source/mdt-public into… (authored by ramien).
Merge branch 'torch1x' of https://phabricator.mitk.org/source/mdt-public into…
Apr 17 2020, 11:06 AM
ramien committed rMDTPUBLICb03b2c3b7e3a: adam->adamw. fix in toy dataloader. (authored by ramien).
adam->adamw. fix in toy dataloader.
Apr 17 2020, 11:06 AM

Apr 15 2020

ramien committed rREGRCNN8e637407be4c: replace adam by adamw. exclude norm and bias wghts from weight decay. (authored by ramien).
replace adam by adamw. exclude norm and bias wghts from weight decay.
Apr 15 2020, 5:00 PM
ramien committed rREGRCNNf2ffde4d3b36: update cluster shell scripts (authored by ramien).
update cluster shell scripts
Apr 15 2020, 5:00 PM
ramien committed rREGRCNN5e8c704a11f3: replace adam by adamw. exclude norm and bias wghts from weight decay. (authored by ramien).
replace adam by adamw. exclude norm and bias wghts from weight decay.
Apr 15 2020, 4:58 PM

Apr 14 2020

ramien committed rREGRCNNcf4cdef1d43c: working det unet in mdt toy dataset (authored by ramien).
working det unet in mdt toy dataset
Apr 14 2020, 8:25 PM
ramien committed rREGRCNNe7aef925e389: update cluster shell scripts (authored by ramien).
update cluster shell scripts
Apr 14 2020, 7:34 PM
ramien committed rREGRCNN3317c2db340b: add mdt toy dataset (authored by ramien).
add mdt toy dataset
Apr 14 2020, 7:34 PM
ramien committed rREGRCNN0fab08cbf85c: update install instructs. add cluster shell scripts (authored by ramien).
update install instructs. add cluster shell scripts
Apr 14 2020, 2:31 PM
ramien committed rREGRCNN3c0dd26db098: tiny change in comments (authored by ramien).
tiny change in comments
Apr 14 2020, 2:31 PM
ramien committed rREGRCNN7e7018412505: update install instructs. add cluster shell scripts (authored by ramien).
update install instructs. add cluster shell scripts
Apr 14 2020, 2:29 PM

Apr 7 2020

ramien committed rMDTPUBLIC24fdd6e63dc2: include losses in results dict --> monitoring. adapt results_dict/results_list… (authored by ramien).
include losses in results dict --> monitoring. adapt results_dict/results_list…
Apr 7 2020, 5:53 PM
ramien committed rMDTPUBLIC9f10dfa95113: updates to server-env-related settings (authored by ramien).
updates to server-env-related settings
Apr 7 2020, 2:37 PM
ramien committed rMDTPUBLIC018d1af5f0e8: unittest for fold splits assignements (authored by ramien).
unittest for fold splits assignements
Apr 7 2020, 2:36 PM
ramien committed rMDTPUBLICfe9e192cd147: extend nms test by manual example (authored by ramien).
extend nms test by manual example
Apr 7 2020, 12:17 PM

Apr 6 2020

ramien committed rMDTPUBLIC8f90b50db167: updates to server-env-related settings (authored by ramien).
updates to server-env-related settings
Apr 6 2020, 2:14 PM
ramien committed rMDTPUBLIC9cc860b00d88: updates to server-env-related settings (authored by ramien).
updates to server-env-related settings
Apr 6 2020, 2:14 PM

Apr 3 2020

ramien committed rMDTPUBLICb6bf2094de92: fix lidc server env data copying (authored by ramien).
fix lidc server env data copying
Apr 3 2020, 7:04 PM
ramien committed rMDTPUBLIC25ea752f9252: data_dest instead of slurm_job_id for data copying in server env (authored by ramien).
data_dest instead of slurm_job_id for data copying in server env
Apr 3 2020, 7:02 PM
ramien committed rMDTPUBLICa1b1c5aab6ea: dynamic lr scheduling in lidc configs (authored by ramien).
dynamic lr scheduling in lidc configs
Apr 3 2020, 1:53 PM
ramien committed rMDTPUBLICfae5ed1b2b40: reqs update (authored by ramien).
reqs update
Apr 3 2020, 1:53 PM

Apr 2 2020

ramien committed rREGRCNN634f2fba75bc: extensions setup update (authored by ramien).
extensions setup update
Apr 2 2020, 7:27 PM
ramien committed rREGRCNNf8919265fc7f: extensions setup update. reqs udpates. (authored by ramien).
extensions setup update. reqs udpates.
Apr 2 2020, 7:27 PM
ramien committed rREGRCNNdec3e1a89ffa: extensions setup update. reqs udpates. (authored by ramien).
extensions setup update. reqs udpates.
Apr 2 2020, 7:14 PM
ramien committed rMDTPUBLICc839fb1c3056: reqs update (authored by ramien).
reqs update
Apr 2 2020, 7:09 PM
ramien committed rMDTPUBLICc04c1dca814d: re-add roi_al extension srcs (authored by ramien).
re-add roi_al extension srcs
Apr 2 2020, 6:26 PM
ramien committed rMDTPUBLICd88c287e86c4: update pillow in reqs (authored by ramien).
update pillow in reqs
Apr 2 2020, 6:13 PM
ramien committed rMDTPUBLIC570d372c4e1f: update pillow in reqs (authored by ramien).
update pillow in reqs
Apr 2 2020, 4:24 PM
ramien committed rMDTPUBLIC67401782e4e8: merge (authored by ramien).
merge
Apr 2 2020, 4:00 PM
ramien committed rMDTPUBLIC97f5eb1f6dd5: prepro import fix (authored by ramien).
prepro import fix
Apr 2 2020, 4:00 PM
ramien committed rMDTPUBLIC3c334ed3c19b: Merge branch 'torch1x' of ssh://phabricator.mitk.org:2222/source/mdt-public… (authored by ramien).
Merge branch 'torch1x' of ssh://phabricator.mitk.org:2222/source/mdt-public…
Apr 2 2020, 4:00 PM
ramien committed rMDTPUBLIC088ac1f05fc4: intermed save (authored by ramien).
intermed save
Apr 2 2020, 3:42 PM
ramien committed rMDTPUBLIC845c101dfc7e: intermed save (authored by ramien).
intermed save
Apr 2 2020, 2:34 PM

Mar 31 2020

ramien committed rMDTPUBLICc42db674a3e4: fix multi-fold submission cluster runner scripts (authored by ramien).
fix multi-fold submission cluster runner scripts
Mar 31 2020, 8:25 PM
ramien committed rMDTPUBLIC3b8813008809: update cluster runner scripts (authored by ramien).
update cluster runner scripts
Mar 31 2020, 8:03 PM
ramien committed rMDTPUBLICdacb3b0aa315: add cluster runner scripts (authored by ramien).
add cluster runner scripts
Mar 31 2020, 3:50 PM

Mar 27 2020

ramien committed rMDTPUBLIC5e191e9ba94d: data_dest for server_env instead of slurm_job_id (authored by ramien).
data_dest for server_env instead of slurm_job_id
Mar 27 2020, 6:10 PM
ramien committed rMDTPUBLIC6529b8e58212: include installing extensions from wheel instead only source (authored by ramien).
include installing extensions from wheel instead only source
Mar 27 2020, 4:00 PM
ramien committed rMDTPUBLICe4d3948d4775: WIP on torch1x: c8c43d6 fix tboard holding up script exit (authored by ramien).
WIP on torch1x: c8c43d6 fix tboard holding up script exit
Mar 27 2020, 4:00 PM
ramien committed rMDTPUBLIC521601138028: index on torch1x: c8c43d6 fix tboard holding up script exit (authored by ramien).
index on torch1x: c8c43d6 fix tboard holding up script exit
Mar 27 2020, 4:00 PM

Mar 26 2020

ramien committed rMDTPUBLICc8c43d62aac4: fix tboard holding up script exit (authored by ramien).
fix tboard holding up script exit
Mar 26 2020, 3:35 PM
ramien committed rREGRCNNc16383b3aa4a: fix tboard holding up script exit (authored by ramien).
fix tboard holding up script exit
Mar 26 2020, 3:32 PM
ramien committed rREGRCNN0506d7e602f6: fix tboard holding up script exit (authored by ramien).
fix tboard holding up script exit
Mar 26 2020, 3:32 PM
ramien committed rMDTPUBLIC0e46f8dc24b7: revert roialign to original grid points methods (as in tv.ops) (authored by ramien).
revert roialign to original grid points methods (as in tv.ops)
Mar 26 2020, 3:01 PM
ramien committed rMDTPUBLICff2bf3c205eb: toy data: make noise optional (authored by ramien).
toy data: make noise optional
Mar 26 2020, 3:01 PM

Mar 25 2020

ramien committed rMDTPUBLICc3509e803e0b: toy data dir fix (authored by ramien).
toy data dir fix
Mar 25 2020, 3:38 PM
ramien committed rREGRCNNf2a1182b58b3: req update (authored by ramien).
req update
Mar 25 2020, 2:42 PM
ramien committed rREGRCNN6d43b05922dd: req update (authored by ramien).
req update
Mar 25 2020, 2:42 PM
ramien committed rREGRCNN6c9b01ab687c: update batch sampling description (authored by ramien).
update batch sampling description
Mar 25 2020, 2:35 PM
ramien committed rREGRCNN1ed74a432ced: update batch sampling description (authored by ramien).
update batch sampling description
Mar 25 2020, 2:35 PM
ramien committed rREGRCNN3544413de543: return roial grid points to orig method (tv.ops). (authored by ramien).
return roial grid points to orig method (tv.ops).
Mar 25 2020, 2:06 PM
ramien committed rREGRCNN5b1363f762af: return roial grid points to orig method (tv.ops). automatic checkpoint path… (authored by ramien).
return roial grid points to orig method (tv.ops). automatic checkpoint path…
Mar 25 2020, 2:06 PM
ramien committed rREGRCNN90e0e9be44ea: return roial grid points to orig method (tv.ops). automatic checkpoint path… (authored by ramien).
return roial grid points to orig method (tv.ops). automatic checkpoint path…
Mar 25 2020, 1:47 PM

Mar 24 2020

ramien committed rREGRCNN61452029e29d: model selector: argsort->stable (authored by ramien).
model selector: argsort->stable
Mar 24 2020, 9:23 PM
ramien committed rREGRCNNfbead61813bf: no focal loss in configs (authored by ramien).
no focal loss in configs
Mar 24 2020, 7:37 PM

Mar 13 2020

ramien committed rREGRCNN02edd6f35ecb: dataloader updates (authored by ramien).
dataloader updates
Mar 13 2020, 4:21 PM
ramien committed rREGRCNN3c8d2ad88c1f: dataloader updates (authored by ramien).
dataloader updates
Mar 13 2020, 4:21 PM
ramien committed rREGRCNN7615d1802f80: dataloader updates (authored by ramien).
dataloader updates
Mar 13 2020, 3:45 PM
ramien committed rREGRCNN3b0f1c59b611: dataloader bg balancing change. need to check for lidc (authored by ramien).
dataloader bg balancing change. need to check for lidc
Mar 13 2020, 3:40 PM
ramien committed rREGRCNNdefce60a8fec: req update (authored by ramien).
req update
Mar 13 2020, 3:40 PM
ramien committed rREGRCNN93510b455328: lidc sa dataloader fix (authored by ramien).
lidc sa dataloader fix
Mar 13 2020, 3:40 PM
ramien committed rREGRCNNd9ef52f8b383: req update (authored by ramien).
req update
Mar 13 2020, 11:48 AM
ramien committed rREGRCNN46bf951f0113: single-anno lidc dataloader mp batch balancing. split-off plotting to not hold… (authored by ramien).
single-anno lidc dataloader mp batch balancing. split-off plotting to not hold…
Mar 13 2020, 11:39 AM

Mar 12 2020

ramien committed rREGRCNN6073f2b796f4: dataloader bg balancing change. need to check for lidc (authored by ramien).
dataloader bg balancing change. need to check for lidc
Mar 12 2020, 3:18 PM

Mar 11 2020

ramien committed rREGRCNN86477a8b3241: dataloader balancing update (authored by ramien).
dataloader balancing update
Mar 11 2020, 3:09 PM
ramien committed rREGRCNNc75a986ed8ee: dataloader balancing update (authored by ramien).
dataloader balancing update
Mar 11 2020, 3:06 PM
ramien committed rREGRCNN18eb7dd51bf9: pre dataloader update (authored by ramien).
pre dataloader update
Mar 11 2020, 3:06 PM

Mar 9 2020

ramien committed rREGRCNN5285ecea16da: dataloader multithreaded iterating fix (authored by ramien).
dataloader multithreaded iterating fix
Mar 9 2020, 5:40 PM
ramien committed rREGRCNN6f1505aaad62: dataloader multithreaded iterating fix (authored by ramien).
dataloader multithreaded iterating fix
Mar 9 2020, 5:40 PM

Jan 9 2020

ramien committed rMDTPUBLIC76037802673a: x-y-confusion fix RoIAlign (authored by ramien).
x-y-confusion fix RoIAlign
Jan 9 2020, 4:23 PM
ramien committed rREGRCNNcd5ea0e43b3c: x-y-confusion fix roi align (authored by ramien).
x-y-confusion fix roi align
Jan 9 2020, 4:10 PM
ramien committed rREGRCNNf37ea2819e84: branch-change (authored by ramien).
branch-change
Jan 9 2020, 4:10 PM
ramien committed rREGRCNN102f814600b8: eod save (authored by ramien).
eod save
Jan 9 2020, 4:10 PM
ramien committed rREGRCNNbce60a8e3ff6: eod save (authored by ramien).
eod save
Jan 9 2020, 4:10 PM
ramien committed rREGRCNN40755fd9c28c: x-y-confusion fix roi align (authored by ramien).
x-y-confusion fix roi align
Jan 9 2020, 4:10 PM

Jan 7 2020

ramien committed rMDTPUBLICb0eacd38bd05: introduce tensorboard logging of monitor metrics instead of matplotlib plot (authored by ramien).
introduce tensorboard logging of monitor metrics instead of matplotlib plot
Jan 7 2020, 7:48 PM
ramien committed rMDTPUBLIC34add033febe: load saved models directly instead from tmp_model, tmp_backbone (authored by ramien).
load saved models directly instead from tmp_model, tmp_backbone
Jan 7 2020, 1:03 PM

Jan 2 2020

ramien committed rREGRCNNb097633038a5: reqs (authored by ramien).
reqs
Jan 2 2020, 2:53 PM