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Diffusion MITK 0543e82ef019

Merge branch 'bug-19693-multispectral_imaging_integrationbranch'
0543e82ef019
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Merge branch 'bug-19693-multispectral_imaging_integrationbranch'

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• wirkertAuthored on Apr 26 2016, 11:42 AM
Parents
rMITK414a5ac3e912: Delete deprecated Monte Carlo Code.
rMITK576986fc4fa8: Merge branch 'bug-19686-addQtLinguistTools'
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Modules/
Biophotonics/
python/
iMC/
mc/
inverseMonteCarlo/
data/
test/
generate/
msi/
inverseMonteCarlo/
io/
helper/
test/
reader/
scripts/
basic_checks/
inverseMonteCarlo/
tests/
scripts/
domain_adaptation/
inverseMonteCarlo/
ipcai2016/
inverseMonteCarlo/
ipcai_to_caffe/
inverseMonteCarlo/
ipcai_to_tensorflow/
inverseMonteCarlo/
ipcai_to_theano/
inverseMonteCarlo/
spielewiese/
inverseMonteCarlo/
iMC/
regression/
inverseMonteCarlo/
setup/

rMITK0543e82ef019

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Modules/Biophotonics/python/iMC/mc/__init__.py

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Modules/Biophotonics/python/iMC/mc/batches.py

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Modules/Biophotonics/python/iMC/mc/create_spectrum.py

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Modules/Biophotonics/python/iMC/mc/data/beta_carotin.txt

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Modules/Biophotonics/python/iMC/mc/data/bilirubin.txt

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Modules/Biophotonics/python/iMC/mc/data/colon_default.mci

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Modules/Biophotonics/python/iMC/mc/data/correct.mci

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Modules/Biophotonics/python/iMC/mc/data/haemoglobin.txt

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Modules/Biophotonics/python/iMC/mc/dfmanipulations.py

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Modules/Biophotonics/python/iMC/mc/factories.py

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Modules/Biophotonics/python/iMC/mc/plot.py

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Modules/Biophotonics/python/iMC/mc/sim.py

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Modules/Biophotonics/python/iMC/mc/test/__init__.py

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Modules/Biophotonics/python/iMC/mc/test/test_dfmanipulations.py

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Modules/Biophotonics/python/iMC/mc/test/test_sim.py

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Modules/Biophotonics/python/iMC/mc/test/test_tissuemodels.py

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Modules/Biophotonics/python/iMC/mc/test/test_ua.py

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Modules/Biophotonics/python/iMC/mc/test/test_usg.py

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Modules/Biophotonics/python/iMC/mc/tissuemodels.py

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Modules/Biophotonics/python/iMC/mc/usuag.py

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Modules/Biophotonics/python/iMC/msi/__init__.py

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Modules/Biophotonics/python/iMC/msi/data/Transmission_15-49-35-978_filter700nm.txt

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Modules/Biophotonics/python/iMC/msi/data/testMsi.nrrd

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Modules/Biophotonics/python/iMC/msi/imgmani.py

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Modules/Biophotonics/python/iMC/msi/io/__init__.py

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Modules/Biophotonics/python/iMC/msi/io/msireader.py

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Modules/Biophotonics/python/iMC/msi/io/msiwriter.py

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Modules/Biophotonics/python/iMC/msi/io/nrrdreader.py

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Modules/Biophotonics/python/iMC/msi/io/nrrdwriter.py

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Modules/Biophotonics/python/iMC/msi/io/pngreader.py

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Modules/Biophotonics/python/iMC/msi/io/reader.py

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Modules/Biophotonics/python/iMC/msi/io/spectrometerreader.py

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Modules/Biophotonics/python/iMC/msi/io/tiffreader.py

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Modules/Biophotonics/python/iMC/msi/io/tiffringreader.py

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Modules/Biophotonics/python/iMC/msi/io/tiffwriter.py

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Modules/Biophotonics/python/iMC/msi/io/writer.py

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Modules/Biophotonics/python/iMC/msi/msi.py

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Modules/Biophotonics/python/iMC/msi/msimanipulations.py

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Modules/Biophotonics/python/iMC/msi/normalize.py

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Modules/Biophotonics/python/iMC/msi/plot.py

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Modules/Biophotonics/python/iMC/msi/test/__init__.py

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Modules/Biophotonics/python/iMC/msi/test/helpers.py

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Modules/Biophotonics/python/iMC/msi/test/test_imgmani.py

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Modules/Biophotonics/python/iMC/msi/test/test_msi.py

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Modules/Biophotonics/python/iMC/msi/test/test_msimanipulations.py

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Modules/Biophotonics/python/iMC/msi/test/test_msireaderwriter.py

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Modules/Biophotonics/python/iMC/msi/test/test_normalize.py

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Modules/Biophotonics/python/iMC/msi/test/test_nrrdreader.py

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Modules/Biophotonics/python/iMC/msi/test/test_nrrdwriter.py

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Modules/Biophotonics/python/iMC/msi/test/test_spectrometerreader.py

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Modules/Biophotonics/python/iMC/msi/test/test_tiffwriter.py

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Modules/Biophotonics/python/iMC/regression/__init__.py

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Modules/Biophotonics/python/iMC/regression/domain_adaptation.py

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Modules/Biophotonics/python/iMC/regression/estimation.py

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Modules/Biophotonics/python/iMC/regression/linear.py

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Modules/Biophotonics/python/iMC/regression/preprocessing.py

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Modules/Biophotonics/python/iMC/regression/tensorflow_dataset.py

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Modules/Biophotonics/python/iMC/regression/tensorflow_estimator.py

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Modules/Biophotonics/python/iMC/scripts/basic_checks/__init__.py

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Modules/Biophotonics/python/iMC/scripts/basic_checks/script_evaluate_color_checkerboard.py

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Modules/Biophotonics/python/iMC/scripts/commons.py

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Modules/Biophotonics/python/iMC/scripts/domain_adaptation/__init__.py

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Modules/Biophotonics/python/iMC/scripts/domain_adaptation/domain_adaptation_paths.py

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Modules/Biophotonics/python/iMC/scripts/domain_adaptation/script_analyze_da_in_silico.py

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Modules/Biophotonics/python/iMC/scripts/ipcai2016/__init__.py

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Modules/Biophotonics/python/iMC/scripts/ipcai2016/script_analyze_ipcai_in_silico.py

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Modules/Biophotonics/python/iMC/scripts/ipcai2016/script_analyze_ipcai_in_vivo_liver.py

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Modules/Biophotonics/python/iMC/scripts/ipcai2016/script_analyze_ipcai_in_vivo_small_bowel.py

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Modules/Biophotonics/python/iMC/scripts/ipcai2016/script_calculate_spectra.py

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Modules/Biophotonics/python/iMC/scripts/ipcai2016/tasks_common.py

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Modules/Biophotonics/python/iMC/scripts/ipcai2016/tasks_mc.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/__init__.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_image_hdf5.h5_list.txt

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_solver.prototxt

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_test.prototxt

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_test_hdf5.h5_list.txt

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_test_image.prototxt

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_train.prototxt

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/ipcai_train_hdf5.h5_list.txt

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/script_create_hdf5_database.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/script_create_lmdb_database.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/script_test_pretrained_model.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_caffe/script_train_caffe.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_tensorflow/__init__.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_tensorflow/input_data.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_tensorflow/input_ipcai_data.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_tensorflow/script_train_tensorflow_model.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_theano/__init__.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_theano/input_icai_data.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_theano/logistic_sgd.py

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Modules/Biophotonics/python/iMC/scripts/ipcai_to_theano/script_train_theano_model.py

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Modules/Biophotonics/python/iMC/scripts/spielewiese/__init__.py

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Modules/Biophotonics/python/iMC/scripts/spielewiese/monte_carlo_single_photon.py

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Modules/Biophotonics/python/iMC/scripts/spielewiese/spielewiese.py

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Modules/Biophotonics/python/iMC/setup.py

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Modules/Biophotonics/python/iMC/tox.ini

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Modules/Biophotonics/python/iMC/tutorials/Monte Carlo Spectra Generation - Basic tutorial.ipynb

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Modules/Biophotonics/python/iMC/tutorials/README.txt

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Modules/Biophotonics/python/iMC_ipcai_jcars_save/iMC/tox.ini

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Modules/Biophotonics/python/inverseMonteCarlo

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Modules/Biophotonics/python/inverseMonteCarlo/README.txt

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Modules/Biophotonics/python/inverseMonteCarlo/TechtreePython.txt

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Modules/Biophotonics/python/inverseMonteCarlo/__init__.py

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Modules/Biophotonics/python/inverseMonteCarlo/calculateWeightsForDomainAdaption.py

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Modules/Biophotonics/python/inverseMonteCarlo/data

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Modules/Biophotonics/python/inverseMonteCarlo/data/haemoglobin.txt

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Modules/Biophotonics/python/inverseMonteCarlo/estimateParametersRealImage.py

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Modules/Biophotonics/python/inverseMonteCarlo/evaluateImages.py

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Modules/Biophotonics/python/inverseMonteCarlo/evaluateOptimization.py

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Modules/Biophotonics/python/inverseMonteCarlo/evaluateRandomForest.py

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Modules/Biophotonics/python/inverseMonteCarlo/generate

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Modules/Biophotonics/python/inverseMonteCarlo/generate/__init__.py

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Modules/Biophotonics/python/inverseMonteCarlo/generate/noisyRandom.py

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Modules/Biophotonics/python/inverseMonteCarlo/generate/perfectGrid.py

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Modules/Biophotonics/python/inverseMonteCarlo/generate/randomNonUniform.py

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Modules/Biophotonics/python/inverseMonteCarlo/generate/randomUniform.py

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Modules/Biophotonics/python/inverseMonteCarlo/generateAllSpectra.py

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Modules/Biophotonics/python/inverseMonteCarlo/gpumcml.patch

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Modules/Biophotonics/python/inverseMonteCarlo/helper

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Modules/Biophotonics/python/inverseMonteCarlo/helper/__init__.py

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Modules/Biophotonics/python/inverseMonteCarlo/helper/mieMonteCarlo.py

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Modules/Biophotonics/python/inverseMonteCarlo/helper/monteCarloHelper.py

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Modules/Biophotonics/python/inverseMonteCarlo/lenstest.py

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Modules/Biophotonics/python/inverseMonteCarlo/lighttest.py

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Modules/Biophotonics/python/inverseMonteCarlo/optimization.py

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Modules/Biophotonics/python/inverseMonteCarlo/randomForest.py

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Modules/Biophotonics/python/inverseMonteCarlo/reader

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Modules/Biophotonics/python/inverseMonteCarlo/reader/__init__.py

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Modules/Biophotonics/python/inverseMonteCarlo/reader/csvImageReader.py

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Modules/Biophotonics/python/inverseMonteCarlo/reader/sitkImageReader.py

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Modules/Biophotonics/python/inverseMonteCarlo/reflectanceError.py

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Modules/Biophotonics/python/inverseMonteCarlo/setup

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Modules/Biophotonics/python/inverseMonteCarlo/setup/__init__.py

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Modules/Biophotonics/python/inverseMonteCarlo/setup/data.py

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Modules/Biophotonics/python/inverseMonteCarlo/setup/simulation.py

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Modules/Biophotonics/python/inverseMonteCarlo/setup/systemPaths.py

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Modules/Biophotonics/python/inverseMonteCarlo/tests

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Modules/Biophotonics/python/inverseMonteCarlo/tests/__init__.py

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Modules/Biophotonics/python/inverseMonteCarlo/tests/test_mie.py

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Modules/Biophotonics/python/inverseMonteCarlo/tests/test_sitkImageReader.py

MITK · MIC · IMSY · DKFZ