Diffusion MITK d3bec301caee

Merge branch 'bug-12703-implement-a-2d-livewire-tool' into…
d3bec301caee
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Description

Merge branch 'bug-12703-implement-a-2d-livewire-tool' into personal/schroedt/livewire-integration

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Provenance

• schroedt

Authored on Dec 5 2012, 9:59 AM

Parents

rMITKb133f3272809: fixed remove vertex after move
rMITK0d147c8d11cb: merge branch bug-12704-implement-contourmodel

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Event Timeline

• schroedt committed rMITKd3bec301caee: Merge branch 'bug-12703-implement-a-2d-livewire-tool' into… (authored by • schroedt).Dec 5 2012, 9:59 AM

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

b133f3272809 fixed remove vertex after move
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• schroedt
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496dfa6f77b6 Merge branch 'bug-12703-implement-a-2d-livewire-tool' of mitk.org:MITK into bug…
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c2f66a2a52d7 fixed some rendering stuff
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• schroedt
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ff1de48aafb9 fix bug after clicking in 3d window
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2936e8996a48 renamed contourmodelelement to contourelement
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• schroedt
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44fdfb06b3c8 added statemachine and interactor to xml file. see bug 3701.
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b5685ae42a58 inverted interaction
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• schroedt
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c64ba993d816 fix cost function
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c1279e0afc82 removed performance test
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907dd82b83af add with ctrl to avoid use of dynamic costs
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f02428e5e567 fix list of contours
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• schroedt
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2722a1c46827 fix requested region
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• schroedt
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a6949f5bb7f0 do not use dynamic costs if ctrl+mousemove
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2f369a357b1a *temporarly* check for duplicate points
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• schroedt
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98e132bcf8aa map initial click to highest gradient magn. in region 5x5
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• schroedt
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bd6bceb60509 fixed click in other slices
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c9c2ac6fdca2 some documentation
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4a0d85aa8bc9 put gaussian approximation in static member function
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6e6befffdade *temporarly* always update dynamic cost map
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dc077768287a fixed timestep support for livewire tool
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d04e0f0ba7cd make segmentation after deactivating tool
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daf7b0a2630d added function to get image as 2D slice by plane geometry plus timestep
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e2782b0cc982 no boundingbox update for 2D geometries
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a14795ac79a0 remove nodes on deactivation of tool
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• schroedt
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5ac459ac34e6 fixed requested region bug
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unknown <schroedt@.inet.dkfz-heidelberg.de>
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f8c8d29215b7 fix cost map bug
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unknown <schroedt@.inet.dkfz-heidelberg.de>
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5286af50381c finish tool on deactivation
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• schroedt
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b9ca2e31d3b2 scale bins by enum constant
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• schroedt
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1ea356c2a617 remove duplicate vertex
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03d4431bdd2e take nearest active point in approximate nearest neighbour search
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a9ade2b298f1 handle deactivating tool properly
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2be804695e58 use dynamic cost map for livewire tool
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5a38522755c5 generate cost map in filter for next update
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47beea2750e6 use dynamic cost map
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27018d58f570 only set a new image to cost function if the input has changed
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58954f0a85dd execute initialize only once
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9682b71825e9 cost map creation not completed
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76032058d5ab removed unused code
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5c6f86dadac7 documentation of cost function
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5205c02d12ec fix comments
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e2fd73e27164 set use of dynamic cost map after a segment is computed
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18457a3531ca compute cost map for cost function
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b57cfe8ff52a added dynamic cost map
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90c1227b4a2b documentation
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8e737da0483d commented MITK_INFO outputs
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79668f3a8611 fixed invalid input for acos function
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d9fa22235135 livewire interaction on move vertex fixed
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93d3f3efe409 costfunction and shortestpath filter as members
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d036ac613e3f extract features by itk filters on intialize
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f86cf2f62e26 use of itk filter for gradient magnitude and its maximum calculatio
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Changes (32)

Path

Size

Packages

Core/

Code/

Interactions/

StateMachine.xml

mitkInteractionConst.h

Modules/

CMakeLists.txt

GraphAlgorithms/

files.cmake

itkShortestPathCostFunctionLiveWire.h

itkShortestPathCostFunctionLiveWire.txx

itkShortestPathImageFilter.h

itkShortestPathImageFilter.txx

Segmentation/

Algorithms/

mitkImageLiveWireContourModelFilter.cpp

O1: MITK Reviewer Group I

mitkImageLiveWireContourModelFilter.h

O1: MITK Reviewer Group I

mitkImageToContourModelFilter.cpp

O1: MITK Reviewer Group I

	mitkImageToContourModelFilter.h
	mitkContourModelToSurfaceFilter.h

O1: MITK Reviewer Group I

mitkImageToLiveWireContourFilter.cpp

O1: MITK Reviewer Group I

	mitkImageToLiveWireContourFilter.h
	mitkContourModelSubDivisionFilter.h

O1: MITK Reviewer Group I

mitkSegmentationObjectFactory.cpp

O1: MITK Reviewer Group I

CMakeLists.txt

O1: MITK Reviewer Group I

DataManagement/

mitkContourElement.cpp

O1: MITK Reviewer Group I

IO/

mitkContourModelReader.cpp

O1: MITK Reviewer Group I

Interactions/

mitkContourModelInteractor.h

O1: MITK Reviewer Group I

mitkContourModelLiveWireInteractor.cpp

O1: MITK Reviewer Group I

mitkContourModelLiveWireInteractor.h

O1: MITK Reviewer Group I

mitkLiveWireTool2D.cpp

O1: MITK Reviewer Group I

mitkLiveWireTool2D.h

O1: MITK Reviewer Group I

mitkLiveWireTool2D.xpm

O1: MITK Reviewer Group I

mitkSegTool2D.cpp

O1: MITK Reviewer Group I

mitkSegTool2D.h

O1: MITK Reviewer Group I

Rendering/

mitkContourModelGLMapper2D.cpp

O1: MITK Reviewer Group I

mitkContourModelGLMapper2D.h

O1: MITK Reviewer Group I

mitkContourModelMapper3D.cpp

O1: MITK Reviewer Group I

files.cmake

O1: MITK Reviewer Group I

Plugins/

org.mitk.gui.qt.application/

resources/

StateMachine.xml

O1: MITK Reviewer Group I

org.mitk.gui.qt.segmentation/

src/

internal/

QmitkSegmentationView.cpp

O1: MITK Reviewer Group I

rMITKd3bec301caee

View Options

Core/Code/Interactions/StateMachine.xml

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Core/Code/Interactions/mitkInteractionConst.h

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Modules/CMakeLists.txt

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Modules/GraphAlgorithms/files.cmake

View Options

Modules/GraphAlgorithms/itkShortestPathCostFunctionLiveWire.h

View Options

Modules/GraphAlgorithms/itkShortestPathCostFunctionLiveWire.txx

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Modules/GraphAlgorithms/itkShortestPathImageFilter.h

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Modules/GraphAlgorithms/itkShortestPathImageFilter.txx

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Modules/Segmentation/Algorithms/mitkImageLiveWireContourModelFilter.cpp

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Modules/Segmentation/Algorithms/mitkImageLiveWireContourModelFilter.h

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Modules/Segmentation/Algorithms/mitkImageToContourModelFilter.cpp

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Modules/Segmentation/Algorithms/mitkImageToContourModelFilter.h

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Modules/Segmentation/Algorithms/mitkImageToLiveWireContourFilter.cpp

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Modules/Segmentation/Algorithms/mitkImageToLiveWireContourFilter.h

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Modules/Segmentation/Algorithms/mitkSegmentationObjectFactory.cpp

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Modules/Segmentation/CMakeLists.txt

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Modules/Segmentation/DataManagement/mitkContourElement.cpp

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Modules/Segmentation/IO/mitkContourModelReader.cpp

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Modules/Segmentation/Interactions/mitkContourModelInteractor.h

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Modules/Segmentation/Interactions/mitkContourModelLiveWireInteractor.cpp

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Modules/Segmentation/Interactions/mitkContourModelLiveWireInteractor.h

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Modules/Segmentation/Interactions/mitkLiveWireTool2D.cpp

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Modules/Segmentation/Interactions/mitkLiveWireTool2D.h

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Modules/Segmentation/Interactions/mitkLiveWireTool2D.xpm

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Modules/Segmentation/Interactions/mitkSegTool2D.cpp

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Modules/Segmentation/Interactions/mitkSegTool2D.h

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Modules/Segmentation/Rendering/mitkContourModelGLMapper2D.cpp

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Modules/Segmentation/Rendering/mitkContourModelGLMapper2D.h

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Modules/Segmentation/Rendering/mitkContourModelMapper3D.cpp

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Modules/Segmentation/files.cmake

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Plugins/org.mitk.gui.qt.application/resources/StateMachine.xml

View Options

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp

Merge branch 'bug-12703-implement-a-2d-livewire-tool' into…d3bec301caeeActions

Description

Details

Event Timeline

Merged Changes

Changes (32)

rMITKd3bec301caee

Core/Code/Interactions/StateMachine.xml

Core/Code/Interactions/mitkInteractionConst.h

Modules/CMakeLists.txt

Modules/GraphAlgorithms/files.cmake

Modules/GraphAlgorithms/itkShortestPathCostFunctionLiveWire.h

Modules/GraphAlgorithms/itkShortestPathCostFunctionLiveWire.txx

Modules/GraphAlgorithms/itkShortestPathImageFilter.h

Modules/GraphAlgorithms/itkShortestPathImageFilter.txx

Modules/Segmentation/Algorithms/mitkImageLiveWireContourModelFilter.cpp

Modules/Segmentation/Algorithms/mitkImageLiveWireContourModelFilter.h

Modules/Segmentation/Algorithms/mitkImageToContourModelFilter.cpp

Modules/Segmentation/Algorithms/mitkImageToContourModelFilter.h

Modules/Segmentation/Algorithms/mitkImageToLiveWireContourFilter.cpp

Modules/Segmentation/Algorithms/mitkImageToLiveWireContourFilter.h

Modules/Segmentation/Algorithms/mitkSegmentationObjectFactory.cpp

Modules/Segmentation/CMakeLists.txt

Modules/Segmentation/DataManagement/mitkContourElement.cpp

Modules/Segmentation/IO/mitkContourModelReader.cpp

Modules/Segmentation/Interactions/mitkContourModelInteractor.h

Modules/Segmentation/Interactions/mitkContourModelLiveWireInteractor.cpp

Modules/Segmentation/Interactions/mitkContourModelLiveWireInteractor.h

Modules/Segmentation/Interactions/mitkLiveWireTool2D.cpp

Modules/Segmentation/Interactions/mitkLiveWireTool2D.h

Modules/Segmentation/Interactions/mitkLiveWireTool2D.xpm

Modules/Segmentation/Interactions/mitkSegTool2D.cpp

Modules/Segmentation/Interactions/mitkSegTool2D.h

Modules/Segmentation/Rendering/mitkContourModelGLMapper2D.cpp

Modules/Segmentation/Rendering/mitkContourModelGLMapper2D.h

Modules/Segmentation/Rendering/mitkContourModelMapper3D.cpp

Modules/Segmentation/files.cmake

Plugins/org.mitk.gui.qt.application/resources/StateMachine.xml

Plugins/org.mitk.gui.qt.segmentation/src/internal/QmitkSegmentationView.cpp

Merge branch 'bug-12703-implement-a-2d-livewire-tool' into…
d3bec301caee
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