Pushed new branch to rMITK MITK: feature/T30353-tool-confirm-exit.
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Apr 9 2024
Apr 8 2024
Apr 7 2024
Pushed new branch to rMITK MITK: feature/T30391-python312-update.
Apr 6 2024
Pushed new branch to rMITK MITK: feature/T30300-totalseg-fastbox.
Apr 4 2024
Pushed new branch to rMITK MITK: feature/T30357-medsam-doku.
Mar 20 2024
Discussion result - Change checklist
Discussion result - Evaluate if in case of no selection (no labels), the highlight is enough to indicate a "selected group".
Discussion result - Decided on (a)
Mar 18 2024
Pushed new branch to rMITK MITK: feature/T30355-medsam-tool.
Mar 15 2024
Pushed new branch to rMITK MITK: feature/T30353-totalseg-update.
Mar 7 2024
The issue was discovered when working with @s669m for visualization of CNN output data. The reason for this behaviour, as pointed out by @s434n, could be that MITK is unable to properly bin the pixel values for floating point data to create histogram. The hypothesis seems accurate- the same image when converted to int type works as expected in Volume Visualization view.
Mar 6 2024
Deleted branch from rMITK MITK: feature/T30302-python-version-check.
Fixed with D896
Feb 12 2024
SegmentAnyBone is SAM with an extra attention pathway as well, pretrained on MRI dataset.
They have trained the visual transformer vit_t type model and released new pretrained weights. From code perspective, they have modified down SAM code to include attention map and packs with it in the repo.
Salient points:
Jan 30 2024
MedSAM is same old SAM, pretrained using medical image-based dataset.
They have trained the visual transformer vit_b type model and released new pretrained weights. So fundamentally, there is no change in architecture. However, from code perspective, they have modified/trimmed down SAM code to their application and packs with it in the repo.
Salient points:
Jan 26 2024
Ok, I have updated the task description.
Jan 22 2024
Pushed new branch to rMITK MITK: feature/T30171-python-wrapping-new.
Jan 2 2024
Dec 19 2023
Deleted branch from rMITK MITK: feature/T29540-sam-2d-tool.
Deleted branch from rMITK MITK: feature/T29644-sam-doku.
Deleted branch from rMITK MITK: feature/T29560-totalseg-label-update.
Deleted branch from rMITK MITK: feature/T29604-sam-tool-2.
Deleted branch from rMITK MITK: feature/T30215-totalseg-v2-update.
Deleted branch from rMITK MITK: feature/T30253-sam-message-update.
Deleted branch from rMITK MITK: feature/T30256-add-python-version-check.
Pushed new branch to rMITK MITK: feature/T30302-python-version-check.
All pressing issues are now resolved &/or solutions are available. Hence, closing the task.
Basic version checks are introduced via D888. Further refinements in the code will be follow later on.
Nov 23 2023
Nov 22 2023
Nov 21 2023
Pushed new branch to rMITK MITK: feature/T30263-sam-2d-bugfix.
Pushed new branch to rMITK MITK: feature/T30256-add-python-version-check.