This task is closed since the ModelFit/Perfusion views will be part of MITK v2024.06 and it is planned that they will be part of the official releases from MITK v2024.06 onwards.
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Today
Today
kompan added a project to T30204: Improve visibility between help files for perfusion: Next Milestone.
kompan added a project to T29638: ModelFit Inspector crahes sometimes on data selection: Next Milestone.
kompan closed T27339: Provide public MITK ModelFit installer on a regular basis, a subtask of T27340: [ModelFit] Request for Mac Workbench installer, as Resolved.
kompan added a project to T30437: [Perfusion] Provide example start parameter image for checklists: Next Milestone.
kompan edited projects for T26288: MRI Perfusion view should only generate concentration images once, added: Next Milestone; removed Cleared.
kompan closed T27739: Inspection positions deletion in ModelFit not updated in data display. as Resolved.
kompan committed rMITK4f7293627beb: Fix collection of bugs in the ModelFitInspectorView. (authored by kompan).
Fix collection of bugs in the ModelFitInspectorView.
kompan committed rMITK9f2fc5b40ff0: SmartPointer for m_PositionBookmarksNode and m_PositionBookmarks. (authored by kompan).
SmartPointer for m_PositionBookmarksNode and m_PositionBookmarks.
Remove empty line.
Fix comparison to resolve CI errors.
kompan committed rMITKa20f31105474: Use container iteration to iterated over static parameters. (authored by kompan).
Use container iteration to iterated over static parameters.
Remove old code.
kompan committed rMITKb836340cf070: Hide "Additional input data visibilty" field (T30238) (authored by kompan).
Hide "Additional input data visibilty" field (T30238)
kompan committed rMITK5a4e9e52341d: Fix inspection positions deletion update (T27739). (authored by kompan).
Fix inspection positions deletion update (T27739).
kompan committed rMITK6118a45f16a3: Write vectors of all AIF and AIF Timegrid values into fit result table (T30237). (authored by kompan).
Write vectors of all AIF and AIF Timegrid values into fit result table (T30237).
kompan committed rMITKbe8a6b91885f: Correction to set same colors in display of curves and in the view settings… (authored by kompan).
Correction to set same colors in display of curves and in the view settings…
Remove dublication of infoOutput.
Yesterday
Yesterday
kislinsk removed a project from T30446: Decouple Workbench plugin from optional views: Request for Discussion.
Discussion result: Option B.
kompan edited projects for T30428: DCE MR Perfusion DataFit View: Selected Mask widget can't find DICOM segmentation nodes, added: Next Milestone; removed Request for Discussion, Checklist.
kompan added a comment to T30428: DCE MR Perfusion DataFit View: Selected Mask widget can't find DICOM segmentation nodes.
In the MitkNodePredicateGeometry to precision is set to 1e-6. So this is at least one of the issues why the old masks are not found. It could be an option to relax the precision, but since the rotation matrix might have a large effect even for small inaccuracies, it needs to be thoroughly tested first how big the effect is if. e.g 1e-4 is accepted.
For now, the new segmentation masks are provided as test data instead of the old masks.
a178n closed T29197: [Segmentation] Is the classificationsegmentation-plugin used / required? as Resolved.
Already removed
a178n removed a project from T30412: [Statistics] Planar figure cannot be set as ROI for askew images: Request for Discussion.
a178n closed T30447: [TotalSeg] Levelwindow effect, a subtask of T29437: [SEG] Add TotalSegmentator, as Wontfix.
Have in base class and decide wich tools will have it or not. Not ideal for Totalsegmentator
kompan moved T30439: [Perfusion] Only a selection of debug parameter images generated as sub-nodes from Backlog to Cycle on the MITK (v2024.06) board.
kompan moved T30428: DCE MR Perfusion DataFit View: Selected Mask widget can't find DICOM segmentation nodes from Backlog to Cycle on the MITK (v2024.06) board.
floca moved T30447: [TotalSeg] Levelwindow effect from Backlog to MITK Meeting on the Request for Discussion board.
kislinsk moved T30446: Decouple Workbench plugin from optional views from Backlog to MITK Meeting on the Request for Discussion board.
Tue, May 14
Tue, May 14
Pushed new branch to rMITK MITK: feature/T30447-totalseg-levelwindow.
Pushed new branch to rMITK MITK: feature/T30430-python-venv-check.
kompan added a comment to T30428: DCE MR Perfusion DataFit View: Selected Mask widget can't find DICOM segmentation nodes.
I compared the geometry of the dynamic image, the old mask (which could not be found anymore) and a new mask (is found), using the Details info box in MITK. I found small differences in the geometries between the old mask and the dynamic image, but not between the new mask and the dynamic image. Namely:
Spacing:
dynamic image: [1.0156, 1.0156, 5.99998]
old mask: [1.0156, 1.0156, 5.99997]
new mask: [1.0156, 1.0156, 5.99998]
a178n added a revision to T30426: [SEG] Highlight importance of level window in Segment Anything: Unknown Object (Differential Revision).
Undo/redo is a known problem, covered by other tickets.
The crash propblem I was not able to reproduce.
T30444-Crash_when_working_with_labels
floca committed rMITKb6bb9b40d428: Secured usage of GetLabel results to ensure that not nullptr access is (authored by floca).
Secured usage of GetLabel results to ensure that not nullptr access is
floca committed rMITK18037d1366b5: Changed return of GetLabel() to ensure secure usage of method with auto. (authored by floca).
Changed return of GetLabel() to ensure secure usage of method with auto.
kislinsk committed rMITK085d28103a7a: Merge branch 'bugfix/T30445-ChangeDefaultBuildConfig' into develop (authored by kislinsk).
Merge branch 'bugfix/T30445-ChangeDefaultBuildConfig' into develop
kislinsk closed T30445: Change default build configuration from Custom to WorkbenchRelease as Resolved.
kislinsk committed rMITK889397425908: Propagate CMAKE_CONFIGURATION_TYPES to MITK build (authored by kislinsk).
Propagate CMAKE_CONFIGURATION_TYPES to MITK build
kislinsk committed rMITK5a6eec50ba1a: Change default build configuration from Custom to WorkbenchRelease (authored by kislinsk).
Change default build configuration from Custom to WorkbenchRelease
kislinsk added a comment to T30445: Change default build configuration from Custom to WorkbenchRelease.
Deleted branch from rMITK MITK: bugfix/T30445-ChangeDefaultBuildConfig.
kislinsk added a comment to T30445: Change default build configuration from Custom to WorkbenchRelease.
Pushed new branch to rMITK MITK: bugfix/T30445-ChangeDefaultBuildConfig.
kislinsk triaged T30445: Change default build configuration from Custom to WorkbenchRelease as Low priority.
Mon, May 13
Mon, May 13
T30442-fix_clear_label_content_refresh
floca closed T30442: [SEG] Clear content on one label does not directly refresh the render windows as Resolved by committing rMITK9345a199763e: Fixed T30442.
Fixed T30442
kislinsk added a revision to T30444: [SEG] Crash when working a lot with labels on label delete : Unknown Object (Differential Revision).
floca added a revision to T30442: [SEG] Clear content on one label does not directly refresh the render windows: Unknown Object (Differential Revision).
floca moved T30444: [SEG] Crash when working a lot with labels on label delete from Backlog to Cycle on the MITK (v2024.06) board.
Could also verify with Ubuntu and macOS installers that it only seems to happen on the Windows installers with Qt 6.6.1. Close as resolved.
Qt 6.6.3 is the latest version of the Qt 6.6 range. I upgraded e230-nuc03. e230-nuc01 is not accessible via Remote Desktop because of expired credentials, have to upgrade later in office. Ubuntu 20.04 and 22.04 clients already build with Qt 6.6.2.
I was surprised not being able to reproduce this issue anymore with my local build. I then tested the snapshot installer and I was able to reproduce. The only difference I see is Qt 6.6.1 (installer) vs. Qt 6.6.2 (local). I will upgrade Qt on our Windows CI clients and check again...
Sat, May 11
Sat, May 11
After monkey testing in RelWDebugInfo, I think I found a lead. It can happen due to different processing of the Qt event queue that GetLabel is queried in a widget on a label that does not exist anymore. But it is not checked if GetLabel returns nullptr. Which in this case can happen. I hope this will fix the problem..,
floca triaged T30444: [SEG] Crash when working a lot with labels on label delete as Unbreak Now! priority.
Fri, May 10
Fri, May 10
floca triaged T30442: [SEG] Clear content on one label does not directly refresh the render windows as Low priority.
kislinsk added a comment to T26934: Multiple logos in screenshot when using screenshot maker plugin.
Deleted branch from rMITK MITK: bugfix/T26934-FixLogoAnnotation.
kislinsk committed rMITKe6532b6e2a0f: Remove multi widget decoration manager duplicate (authored by kislinsk).
Remove multi widget decoration manager duplicate
kislinsk committed rMITK208cf8597f01: Remove multi widget decoration manager duplicate (authored by kislinsk).
Remove multi widget decoration manager duplicate
floca committed rMITK196b8d8a4948: BREAKING: Removed background click feature from EraseRegionTool (authored by floca).
BREAKING: Removed background click feature from EraseRegionTool
T30422-Remove_erase_tool_background_click
floca committed rMITK6a2778e74939: T30417-Fix_confusing_highlighting_invisible_labels (authored by floca).
T30417-Fix_confusing_highlighting_invisible_labels
Fixed gcc error
floca committed rMITK27cad36203c2: Refactored QmitkMultiLabelInspector to use the highlight guard (authored by floca).
Refactored QmitkMultiLabelInspector to use the highlight guard
floca committed rMITK692addbcd6fe: Rework mapper to support highlight invisible (authored by floca).
Rework mapper to support highlight invisible
Introduced the LabelHighlightGuard
kompan triaged T30441: [Perfusion] Baseline range bug for variable flip angle conversion as Normal priority.
floca edited projects for T30412: [Statistics] Planar figure cannot be set as ROI for askew images, added: Next Milestone, MITK, Request for Discussion; removed Missing Info, Checklist, MITK (v2024.06).
We should clarify how we handle the reinit or reinit warning in the Measurement view. Should be very simelar to the Segmentation view.
kislinsk added a revision to T26934: Multiple logos in screenshot when using screenshot maker plugin: Restricted Differential Revision.
kompan triaged T30440: [Perfusion] Error when loading AIF from csv file in DCE MR Perfusion DataFit View as Normal priority.
kislinsk added a comment to T26934: Multiple logos in screenshot when using screenshot maker plugin.
Pushed new branch to rMITK MITK: bugfix/T26934-FixLogoAnnotation.
kislinsk added a comment to T26934: Multiple logos in screenshot when using screenshot maker plugin.
Deleted branch from rMITK MITK: bugfix/T26934-FixHighResScreenshots.
kompan triaged T30439: [Perfusion] Only a selection of debug parameter images generated as sub-nodes as Normal priority.
kislinsk added a revision to T26934: Multiple logos in screenshot when using screenshot maker plugin: Unknown Object (Differential Revision).
kislinsk added a comment to T26934: Multiple logos in screenshot when using screenshot maker plugin.
Pushed new branch to rMITK MITK: bugfix/T26934-FixHighResScreenshots.
kislinsk edited projects for T26934: Multiple logos in screenshot when using screenshot maker plugin, added: MITK (v2024.06); removed Auto-closed, MITK.
kislinsk reopened T26934: Multiple logos in screenshot when using screenshot maker plugin as "Open".
Thu, May 9
Thu, May 9