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a178n (Ashis Ravindran)
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Nov 19 2020, 10:58 PM (180 w, 1 d)

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a178n closed T30398: 3D interpolation using SAM tool as Invalid.

This was not a valid issue. The real issue was T30403.

Sat, May 4, 1:37 PM · MITK
a178n closed T30398: 3D interpolation using SAM tool, a subtask of T29524: SAM in MITK, as Invalid.
Sat, May 4, 1:37 PM · MITK

Thu, May 2

a178n added a comment to T30353: [TotalSeg] Add confirmation dialog before exiting the tool .

Deleted branch from rMITK MITK: feature/T30353-tool-confirm-exit.

Thu, May 2, 8:36 AM · MITK (v2024.06)
a178n added a comment to T30403: 3D interpolation UX improvement using SAM tool.

Deleted branch from rMITK MITK: feature/T30403-clear-zombie-preview.

Thu, May 2, 8:35 AM · MITK (v2024.06)
a178n added a comment to T30391: [Segmentation] Python 3.12 support for installable AI tools.

Deleted branch from rMITK MITK: feature/T30391-python312-update.

Thu, May 2, 8:34 AM · MITK (v2024.06)
a178n closed T30403: 3D interpolation UX improvement using SAM tool as Resolved.
Thu, May 2, 8:25 AM · MITK (v2024.06)
a178n closed T30403: 3D interpolation UX improvement using SAM tool, a subtask of T29524: SAM in MITK, as Resolved.
Thu, May 2, 8:25 AM · MITK
a178n closed T30391: [Segmentation] Python 3.12 support for installable AI tools as Resolved.
Thu, May 2, 8:25 AM · MITK (v2024.06)
a178n closed T30353: [TotalSeg] Add confirmation dialog before exiting the tool as Resolved.
Thu, May 2, 8:22 AM · MITK (v2024.06)
a178n closed T30353: [TotalSeg] Add confirmation dialog before exiting the tool , a subtask of T29437: [SEG] Add TotalSegmentator, as Resolved.
Thu, May 2, 8:22 AM · MITK
a178n added a revision to T30353: [TotalSeg] Add confirmation dialog before exiting the tool : Unknown Object (Differential Revision).
Thu, May 2, 8:22 AM · MITK (v2024.06)

Mon, Apr 29

a178n committed rMITK79f421965c87: Reset preview before adding point to a new plane (authored by a178n).
Reset preview before adding point to a new plane
Mon, Apr 29, 5:41 PM
a178n committed rMITK16e0e7a3536a: Reset preview logic update (authored by a178n).
Reset preview logic update
Mon, Apr 29, 5:41 PM
a178n committed rMITK3855327865b5: SAM tool Reset old preview before setting new geomtery (authored by a178n).
SAM tool Reset old preview before setting new geomtery
Mon, Apr 29, 5:41 PM
a178n added a revision to T30403: 3D interpolation UX improvement using SAM tool: Unknown Object (Differential Revision).
Mon, Apr 29, 2:30 PM · MITK (v2024.06)
a178n added a comment to T30403: 3D interpolation UX improvement using SAM tool.

Pushed new branch to rMITK MITK: feature/T30403-clear-zombie-preview.

Mon, Apr 29, 2:25 PM · MITK (v2024.06)
a178n triaged T30403: 3D interpolation UX improvement using SAM tool as Normal priority.
Mon, Apr 29, 10:53 AM · MITK (v2024.06)
a178n closed T30354: [MedSAM] Update SAM python daemon script for MedSAM as Resolved.

Find the updated script here: https://github.com/MIC-DKFZ/agent-sam.git@v0.2

Mon, Apr 29, 10:44 AM · MITK (v2024.06)
a178n closed T30354: [MedSAM] Update SAM python daemon script for MedSAM, a subtask of T30314: MedSAM in MITK, as Resolved.
Mon, Apr 29, 10:44 AM · MITK (v2024.06)
a178n closed T30355: [Seg] MedSAM as new 2D Tool in MITK as Resolved.
Mon, Apr 29, 10:43 AM · MITK (v2024.06)
a178n closed T30355: [Seg] MedSAM as new 2D Tool in MITK, a subtask of T30314: MedSAM in MITK, as Resolved.
Mon, Apr 29, 10:43 AM · MITK (v2024.06)
a178n closed T30356: [MedSAM] Create Test user checklist, a subtask of T30314: MedSAM in MITK, as Resolved.
Mon, Apr 29, 10:42 AM · MITK (v2024.06)
a178n closed T30356: [MedSAM] Create Test user checklist as Resolved.
Mon, Apr 29, 10:42 AM · MITK (v2024.06)
a178n closed T30357: [MedSAM] Add user documentaiton, a subtask of T30314: MedSAM in MITK, as Resolved.
Mon, Apr 29, 10:42 AM · MITK (v2024.06)
a178n closed T30357: [MedSAM] Add user documentaiton as Resolved.
Mon, Apr 29, 10:42 AM · MITK (v2024.06)
a178n committed rMITK2e3082856c36: MedSAM tool doxygen documention changes (authored by a178n).
MedSAM tool doxygen documention changes
Mon, Apr 29, 9:06 AM
a178n committed rMITK983859188caa: MedSAM doku update (authored by a178n).
MedSAM doku update
Mon, Apr 29, 9:05 AM
a178n committed rMITK816f8de12342: Minor typo fixes (authored by a178n).
Minor typo fixes
Mon, Apr 29, 9:05 AM
a178n committed rMITKfb467b3b9102: MedSAM & SAM screenshot update (authored by a178n).
MedSAM & SAM screenshot update
Mon, Apr 29, 9:05 AM
a178n committed rMITKfbb453143d00: MedSAM tool user documention (authored by a178n).
MedSAM tool user documention
Mon, Apr 29, 9:05 AM

Sun, Apr 28

a178n committed rMITKcbaf43055a1d: Python 3.12 support for TotalSeg & SAM installations (authored by a178n).
Python 3.12 support for TotalSeg & SAM installations
Sun, Apr 28, 11:29 PM
a178n committed rMITK44ce61b1d410: Python version range specification update (authored by a178n).
Python version range specification update
Sun, Apr 28, 11:29 PM
a178n committed rMITKa36de41cac3b: Python 3.12 support for TotalSeg & SAM (authored by a178n).
Python 3.12 support for TotalSeg & SAM
Sun, Apr 28, 11:29 PM
a178n committed rMITKbf359a964484: MedSAM tool inital changes (authored by a178n).
MedSAM tool inital changes
Sun, Apr 28, 10:18 PM
a178n committed rMITKc0fc994e4e12: MedSAM tool minor update for testing (authored by a178n).
MedSAM tool minor update for testing
Sun, Apr 28, 10:18 PM
a178n committed rMITK2f44c0c6d55e: MedSAM Bounding box changes (authored by a178n).
MedSAM Bounding box changes
Sun, Apr 28, 10:18 PM
a178n committed rMITK064236383068: MedSAM boundingbox bugfixes (authored by a178n).
MedSAM boundingbox bugfixes
Sun, Apr 28, 10:18 PM
a178n committed rMITK135db56eddb6: Register boundbox in segmentation plugin (authored by a178n).
Register boundbox in segmentation plugin
Sun, Apr 28, 10:18 PM
a178n committed rMITK3b1949e21053: Add MedSAM code documentation (authored by a178n).
Add MedSAM code documentation
Sun, Apr 28, 10:18 PM
a178n committed rMITK11a0ed742065: MedSAM Preference UI update (authored by a178n).
MedSAM Preference UI update
Sun, Apr 28, 10:18 PM
a178n committed rMITK2f365d2ccca4: Merge branch 'develop' into feature/T30355-medsam-tool (authored by a178n).
Merge branch 'develop' into feature/T30355-medsam-tool
Sun, Apr 28, 10:18 PM
a178n committed rMITKeb4eacd02549: Merge branch 'develop' into feature/T30355-medsam-tool (authored by a178n).
Merge branch 'develop' into feature/T30355-medsam-tool
Sun, Apr 28, 10:18 PM
a178n committed rMITK7e92989d521f: MedSAM "Reset RoI" will also clear preview segmentation if any (authored by a178n).
MedSAM "Reset RoI" will also clear preview segmentation if any
Sun, Apr 28, 10:18 PM
a178n committed rMITK527b63478043: MedSAM boundingbox coordinate extraction logic update (authored by a178n).
MedSAM boundingbox coordinate extraction logic update
Sun, Apr 28, 10:18 PM
a178n committed rMITK555bca428914: Model type preference change don't need reinit anymore (authored by a178n).
Model type preference change don't need reinit anymore
Sun, Apr 28, 10:18 PM
a178n committed rMITK8691a73a8e78: SAM tool install check updates (authored by a178n).
SAM tool install check updates
Sun, Apr 28, 10:18 PM
a178n committed rMITKa768f541e094: Reset Preview will be more responsive (authored by a178n).
Reset Preview will be more responsive
Sun, Apr 28, 10:18 PM
a178n committed rMITK85eb9f1c4e42: Merge branch 'develop' into feature/T30355-medsam-tool (authored by a178n).
Merge branch 'develop' into feature/T30355-medsam-tool
Sun, Apr 28, 10:17 PM
a178n committed rMITK06812e8f1a0f: Kill process immediately when stderr event to prevent invalid ProcessID pointer (authored by a178n).
Kill process immediately when stderr event to prevent invalid ProcessID pointer
Sun, Apr 28, 10:17 PM
a178n committed rMITK547fe487ac24: Medsam code refactoring changes (authored by a178n).
Medsam code refactoring changes
Sun, Apr 28, 10:17 PM
a178n committed rMITK7c26ba08e742: Change std::stringstream for std::string (authored by a178n).
Change std::stringstream for std::string
Sun, Apr 28, 10:17 PM
a178n committed rMITK110279e34d11: MedSAM tool code (authored by a178n).
MedSAM tool code
Sun, Apr 28, 10:17 PM

Thu, Apr 25

a178n triaged T30398: 3D interpolation using SAM tool as Normal priority.
Thu, Apr 25, 9:11 AM · MITK

Wed, Apr 24

a178n committed rMITKfddfdc182dc2: IsPreviewGenerated set to false when tool is activated (authored by a178n).
IsPreviewGenerated set to false when tool is activated
Wed, Apr 24, 4:27 PM
a178n committed rMITK7f413c922d0e: Confirm Segmentation button bugfix (authored by a178n).
Confirm Segmentation button bugfix
Wed, Apr 24, 4:27 PM
a178n committed rMITKb884b24c25b4: TotalSeg nnUNet Confirm Segmentation button bugfix (authored by a178n).
TotalSeg nnUNet Confirm Segmentation button bugfix
Wed, Apr 24, 4:27 PM

Tue, Apr 23

a178n added a revision to T30392: [Segmentation] Totalsegmentator & Otsu is buggy: Unknown Object (Differential Revision).
Tue, Apr 23, 11:30 PM · MITK (v2024.06)
a178n added a comment to T30392: [Segmentation] Totalsegmentator & Otsu is buggy.

Pushed new branch to rMITK MITK: bugfix/T30392-totalseg-nnunet-confirmbutton.

Tue, Apr 23, 9:48 PM · MITK (v2024.06)

Wed, Apr 17

a178n committed rMITK34b810129724: Merge branch 'develop' into feature/T30353-tool-confirm-exit (authored by a178n).
Merge branch 'develop' into feature/T30353-tool-confirm-exit
Wed, Apr 17, 9:47 AM
a178n committed rMITK4e153e1b8ac0: Add confirm dialog before exiting Totalseg tool (authored by a178n).
Add confirm dialog before exiting Totalseg tool
Wed, Apr 17, 9:47 AM
a178n committed rMITKdd74bf243fed: Update message text (authored by a178n).
Update message text
Wed, Apr 17, 9:47 AM
a178n committed rMITK7d9ec741ede5: Rename ConfirmBeforeExit and moving its implementation to SegWithPreviewTool… (authored by a178n).
Rename ConfirmBeforeExit and moving its implementation to SegWithPreviewTool…
Wed, Apr 17, 9:47 AM
a178n committed rMITK7bc53a62a36f: Update qmessage box text (authored by a178n).
Update qmessage box text
Wed, Apr 17, 9:47 AM
a178n committed rMITK966e84892cf1: Confirm before tool exit (authored by a178n).
Confirm before tool exit
Wed, Apr 17, 9:47 AM

Mon, Apr 15

a178n renamed T30392: [Segmentation] Totalsegmentator & Otsu is buggy from [Segmentation] Totalsegmentator is buggy to [Segmentation] Totalsegmentator & Otsu is buggy.
Mon, Apr 15, 10:26 AM · MITK (v2024.06)
a178n added a comment to T30392: [Segmentation] Totalsegmentator & Otsu is buggy.

Further testing/debugging reveals that the error occurs in TotalSegmentatorTool::UpdatePrepare() method at preview->RemoveLabels(preview->GetAllLabelValues()). More precisely, the LabelSetImage::RemoveLabel method has this->InvokeEvent(LabelRemovedEvent(pixelValue)); which causes the exception. This issue is also applicable for Otsu tool (hence updating the title of this task).

Mon, Apr 15, 10:26 AM · MITK (v2024.06)

Tue, Apr 9

a178n updated the task description for T29652: [Preferences] Cannot open SAM preference page after tool activation.
Tue, Apr 9, 4:26 PM · MITK (v2024.06)
a178n added a comment to T29652: [Preferences] Cannot open SAM preference page after tool activation.

Latest testing reveals that the issue is fixed in Ubuntu 22.04.
I think the reason is Qt6 update.

Tue, Apr 9, 4:23 PM · MITK (v2024.06)
a178n added a revision to T30357: [MedSAM] Add user documentaiton: Unknown Object (Differential Revision).
Tue, Apr 9, 4:13 PM · MITK (v2024.06)
a178n added a comment to T30268: [Checklist] Segmentation 3D Interpolation.

After testing:

  1. Contours are still in red. Not black.❌ -> Checklist updated should suffice.
  2. Interpolation is updated immediately. No need to reinit anymore. ✔
  3. Interpolation is updated immediately. No need to reinit anymore. ✔
  4. Dropdown is still in 3-Dimensional, not on Disabled. ❌ -> Checklist updated could suffice as fix.
  5. There is no contour. Dropdown on "Disabled" ❌
Tue, Apr 9, 12:25 PM · MITK (v2024.06), Checklist
a178n added a comment to T30353: [TotalSeg] Add confirmation dialog before exiting the tool .

Pushed new branch to rMITK MITK: feature/T30353-tool-confirm-exit.

Tue, Apr 9, 10:58 AM · MITK (v2024.06)

Mon, Apr 8

a178n added a revision to T30391: [Segmentation] Python 3.12 support for installable AI tools: Unknown Object (Differential Revision).
Mon, Apr 8, 10:30 AM · MITK (v2024.06)
a178n closed T30300: Remember "Fast" checkbox setting, a subtask of T29437: [SEG] Add TotalSegmentator, as Resolved.
Mon, Apr 8, 10:17 AM · MITK
a178n closed T30300: Remember "Fast" checkbox setting as Resolved.
Mon, Apr 8, 10:17 AM · MITK (v2024.06)
a178n added a revision to T30300: Remember "Fast" checkbox setting: Unknown Object (Differential Revision).
Mon, Apr 8, 10:17 AM · MITK (v2024.06)
a178n added a revision to T30353: [TotalSeg] Add confirmation dialog before exiting the tool : Unknown Object (Differential Revision).
Mon, Apr 8, 10:16 AM · MITK (v2024.06)
a178n committed rMITKad1f95a6d4e1: Totalseg UI fast checkbox setting will be cached (authored by a178n).
Totalseg UI fast checkbox setting will be cached
Mon, Apr 8, 10:07 AM
a178n committed rMITK90cc186e494d: Persistent Totalseg UI fast checkbox setting (authored by a178n).
Persistent Totalseg UI fast checkbox setting
Mon, Apr 8, 10:07 AM
a178n updated the task description for T30392: [Segmentation] Totalsegmentator & Otsu is buggy.
Mon, Apr 8, 9:52 AM · MITK (v2024.06)
a178n created T30392: [Segmentation] Totalsegmentator & Otsu is buggy.
Mon, Apr 8, 9:45 AM · MITK (v2024.06)

Sun, Apr 7

a178n added a comment to T30391: [Segmentation] Python 3.12 support for installable AI tools.

Pushed new branch to rMITK MITK: feature/T30391-python312-update.

Sun, Apr 7, 11:51 PM · MITK (v2024.06)
a178n triaged T30391: [Segmentation] Python 3.12 support for installable AI tools as Normal priority.
Sun, Apr 7, 5:56 PM · MITK (v2024.06)

Sat, Apr 6

a178n added a comment to T30300: Remember "Fast" checkbox setting.

Pushed new branch to rMITK MITK: feature/T30300-totalseg-fastbox.

Sat, Apr 6, 11:55 AM · MITK (v2024.06)
a178n claimed T30300: Remember "Fast" checkbox setting.
Sat, Apr 6, 11:38 AM · MITK (v2024.06)

Thu, Apr 4

a178n added a comment to T30357: [MedSAM] Add user documentaiton.

Pushed new branch to rMITK MITK: feature/T30357-medsam-doku.

Thu, Apr 4, 11:24 PM · MITK (v2024.06)

Mar 20 2024

a178n assigned T29076: [Segmentation] Pressing DEL should delete a label to floca.
Mar 20 2024, 11:57 AM · MITK (v2024.06), Checklist
a178n removed a project from T30306: [Segmentation] Convertion from semantic segmentations to instance segmentations: Request for Discussion.
Mar 20 2024, 11:54 AM · MITK
a178n assigned T30306: [Segmentation] Convertion from semantic segmentations to instance segmentations to floca.
Mar 20 2024, 11:53 AM · MITK
a178n removed a project from T29584: [Interpolation] Confirming 3D interpolation does not set mode to "disabled": Request for Discussion.

Discussion result - Change checklist

Mar 20 2024, 11:48 AM · MITK (v2024.06), Checklist
a178n edited projects for T29557: [Segmentation] "Delete group" button is inactive if there are multiple groups but no labels, added: MITK, Next Milestone; removed Request for Discussion, MITK (v2024.06).

Discussion result - Evaluate if in case of no selection (no labels), the highlight is enough to indicate a "selected group".

Mar 20 2024, 11:43 AM · Next Milestone, MITK
a178n removed a project from T30375: [Statistics] Remove HotspotMaskGenerator or rework and fix tests: Request for Discussion.

Discussion result - Decided on (a)

Mar 20 2024, 11:33 AM · Next Milestone, MITK
a178n removed a project from T30377: Clean up/rewrite View Navigator: Request for Discussion.
Mar 20 2024, 11:28 AM · MITK (v2024.06)
a178n removed a project from T30376: Reduce noise in terminal during startup: Request for Discussion.
Mar 20 2024, 11:15 AM · MITK (v2024.06)

Mar 18 2024

a178n added a comment to T30355: [Seg] MedSAM as new 2D Tool in MITK.

Pushed new branch to rMITK MITK: feature/T30355-medsam-tool.

Mar 18 2024, 11:04 AM · MITK (v2024.06)

Mar 15 2024

a178n added a comment to T30353: [TotalSeg] Add confirmation dialog before exiting the tool .

Pushed new branch to rMITK MITK: feature/T30353-totalseg-update.

Mar 15 2024, 5:47 PM · MITK (v2024.06)

Mar 7 2024

a178n updated subscribers of T30364: Unable to fine tune 3D Volume Visualization for floating point images.

The issue was discovered when working with @s669m for visualization of CNN output data. The reason for this behaviour, as pointed out by @s434n, could be that MITK is unable to properly bin the pixel values for floating point data to create histogram. The hypothesis seems accurate- the same image when converted to int type works as expected in Volume Visualization view.

Mar 7 2024, 4:49 PM · MITK
a178n attached a referenced file: F3329464: mitk_volume_vis_issue.png.
Mar 7 2024, 4:35 PM · MITK
a178n updated the task description for T30364: Unable to fine tune 3D Volume Visualization for floating point images.
Mar 7 2024, 4:35 PM · MITK
a178n created T30364: Unable to fine tune 3D Volume Visualization for floating point images.
Mar 7 2024, 4:34 PM · MITK

Mar 6 2024

a178n added a comment to T30302: Code refactor Python version check.

Deleted branch from rMITK MITK: feature/T30302-python-version-check.

Mar 6 2024, 2:00 PM · MITK (v2024.06)
MITK · MIC · IMSY · DKFZ